Citrus Sinensis ID: 000937
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1218 | 2.2.26 [Sep-21-2011] | |||||||
| Q5W274 | 1447 | Pleiotropic drug resistan | N/A | no | 0.972 | 0.818 | 0.638 | 0.0 | |
| Q9ZUT8 | 1413 | ABC transporter G family | yes | no | 0.972 | 0.838 | 0.602 | 0.0 | |
| Q9LFH0 | 1450 | ABC transporter G family | no | no | 0.973 | 0.817 | 0.595 | 0.0 | |
| Q7PC83 | 1397 | ABC transporter G family | no | no | 0.964 | 0.841 | 0.564 | 0.0 | |
| Q7PC81 | 1390 | ABC transporter G family | no | no | 0.954 | 0.836 | 0.561 | 0.0 | |
| Q8GZ52 | 1400 | ABC transporter G family | no | no | 0.964 | 0.839 | 0.561 | 0.0 | |
| Q7PC82 | 1392 | ABC transporter G family | no | no | 0.954 | 0.835 | 0.559 | 0.0 | |
| Q9XIE2 | 1469 | ABC transporter G family | no | no | 0.972 | 0.805 | 0.483 | 0.0 | |
| Q7PC86 | 1442 | ABC transporter G family | no | no | 0.969 | 0.819 | 0.493 | 0.0 | |
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.972 | 0.825 | 0.494 | 0.0 |
| >sp|Q5W274|PDR3_TOBAC Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1628 bits (4217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 786/1231 (63%), Positives = 975/1231 (79%), Gaps = 46/1231 (3%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
V+GE+SYNGYKLEEFVPQK SAYVSQ DLHIPEMTVRETLD+S+ QGVGSRA+I+ +LS
Sbjct: 228 VSGEISYNGYKLEEFVPQKTSAYVSQNDLHIPEMTVRETLDYSSRFQGVGSRAEIMTDLS 287
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE+EA ++PDPDIDTYMKA S+ KKNLQTDY LKILGLDICADTLVGDA+RRGISGG
Sbjct: 288 RREKEAGVVPDPDIDTYMKAISIEGQKKNLQTDYILKILGLDICADTLVGDAMRRGISGG 347
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QK+RLTTG E++VGPIKA+FMD+I+NGLD ST++QIV CLQ LAHITDATIL+SLLQP+P
Sbjct: 348 QKKRLTTG-ELIVGPIKALFMDEISNGLDSSTTYQIVACLQQLAHITDATILVSLLQPAP 406
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYW 255
ETF LFDDIILMAEGKILYHGPR S LEFFESCGF+CP+RK V S+KDQAQYW
Sbjct: 407 ETFDLFDDIILMAEGKILYHGPRNSALEFFESCGFKCPERKGVADFLQEVTSKKDQAQYW 466
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
+ + FVSVDM KFKESP+ KKL E+LS Y S S ++S++F +SL +WELF+
Sbjct: 467 HGTKETYKFVSVDMLSRKFKESPYRKKLNEELSVPYDNSRSHRNSITFRDYSLPKWELFR 526
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVI 375
ACMSRE LL KRN F+Y+FKT+QL IIA++TMT+FLRT M+ D+ HANY++G+LFY L+I
Sbjct: 527 ACMSREFLLMKRNSFIYIFKTVQLAIIASITMTVFLRTRMDTDLVHANYYLGALFYALII 586
Query: 376 LIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVI 435
L+VDG E+ M++ RLAVFYKQ E+C YPAWAY IPATILK+PLSL+ES++W S+TYYVI
Sbjct: 587 LLVDGFPELSMTITRLAVFYKQSELCFYPAWAYTIPATILKIPLSLLESVIWASMTYYVI 646
Query: 436 GFSPELWRW--------------VSFEKAFVYFCIESSVDHCAETLKIDQFMCFQLEV-- 479
GFSPE R+ +S + C A L I +CF +
Sbjct: 647 GFSPEAGRFFRQLLLLFAVHMTSISMFRFLASVCRTIVASTAAGGLSILFVLCFSGFIIP 706
Query: 480 -------LQYGSSYYLVASLSHN-VRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRG 531
L++G + ++ L++ + L+ N F W+K L TNT+IG E+L+SRG
Sbjct: 707 RPSMPIWLKWG---FWISPLTYGEIGLAVNE----FLAPRWQKTLPTNTSIGNEVLESRG 759
Query: 532 LNFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDD 591
LNFD YF+WIS+ ALFG ++FN F LAL+FLK PGS A+IS K+S I+ S S D
Sbjct: 760 LNFDGYFYWISVCALFGFTILFNIGFTLALTFLKAPGSR-AIISTDKYSQIEGSSDSIDK 818
Query: 592 EHVED---VDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHK-LQLLD 647
+ M++H +M+LPF+P+++VFQD+QY +DTP M E G K LQLL
Sbjct: 819 ADAAENSKATMDSHERAGRMVLPFEPLSLVFQDVQYYVDTPAAMT--ELGFTQKRLQLLS 876
Query: 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGY 707
D+TG LRPG+LTALMGVSGAGKTTLLDVLAGRKT+G +GEIKV GYPK+QETF RVSGY
Sbjct: 877 DITGALRPGILTALMGVSGAGKTTLLDVLAGRKTTGYVEGEIKVGGYPKVQETFARVSGY 936
Query: 708 CEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767
CEQTDIHSP IT+EES+ FSAWLRL PQI+SKTK + V V++TIELDGIK LVG+PGV
Sbjct: 937 CEQTDIHSPQITVEESVIFSAWLRLHPQIDSKTKYEFVKEVIETIELDGIKGMLVGMPGV 996
Query: 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIH 827
SGLSTEQRKRLTI VELVANPSIIFMDEPTTGLDAR+AAIVMRAVKNVADTGRTIVCTIH
Sbjct: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARSAAIVMRAVKNVADTGRTIVCTIH 1056
Query: 828 QPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLE 887
QPSIDIFE+FDELILLKTGGR+IY G LG +S ++IEYFEGI VP+I+NN+NPATWMLE
Sbjct: 1057 QPSIDIFEAFDELILLKTGGRMIYWGHLGRNSCKMIEYFEGISCVPKIKNNHNPATWMLE 1116
Query: 888 VTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKS 947
VTS S+EA++ +DF+++Y++S L++NN+ELV++LS ++DLHF TRFSQNGWGQFK+
Sbjct: 1117 VTSTSSEADISIDFAEVYKNSALHKNNEELVKKLSFPPAGSKDLHFPTRFSQNGWGQFKT 1176
Query: 948 CLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIF 1007
C WKQ+ SYWR+PSYNLMR L+ + AS + GLLFW+KGK+++NQQ +F++ G+++ + IF
Sbjct: 1177 CFWKQYWSYWRSPSYNLMRSLHMLFASLVSGLLFWDKGKKLDNQQSVFSVFGAMFTAVIF 1236
Query: 1008 LGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPM 1067
G N SS LPY +ER+V+YRE+ AGMY+ AYA AQV IEIPYLL QA + +ITYPM
Sbjct: 1237 CGINNSSSVLPYVTTERSVLYRERFAGMYASWAYALAQVAIEIPYLLAQALAFTVITYPM 1296
Query: 1068 IGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVI 1127
IG+Y SAYK+FW FY +FC+++ F+YLG++LV+++P+ VA+ L S+FYT ++LFAGF++
Sbjct: 1297 IGYYWSAYKVFWYFYSMFCTLLYFTYLGMMLVSMTPSFPVAAILQSSFYTMFNLFAGFLM 1356
Query: 1128 PQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDH 1187
P+ QIPKWWIW YYL+PTSWTL G+LTSQYGDI+KEI VF E KT+A+FL +YFGFHH+
Sbjct: 1357 PKAQIPKWWIWFYYLTPTSWTLNGMLTSQYGDIEKEITVFQEKKTVAAFLGDYFGFHHNQ 1416
Query: 1188 LAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
L +VA LI +P+V ASLFAFF+G+LNFQ+R
Sbjct: 1417 LPIVAFVLIAYPLVFASLFAFFIGKLNFQRR 1447
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9ZUT8|AB33G_ARATH ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1550 bits (4012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/1226 (60%), Positives = 942/1226 (76%), Gaps = 41/1226 (3%)
Query: 25 GEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGR 84
GE+SYNG+ L E VPQK SAY+SQ+DLHI EMT RET+DFS CQGVGSR DI++E+S R
Sbjct: 197 GEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKR 256
Query: 85 EEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQK 144
E++ IIPDP+ID YMKA SV LK++LQTDY LKILGLDICA+TLVG+A++RGISGGQK
Sbjct: 257 EKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQK 316
Query: 145 RRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 204
+RLTT EM+VGP KA+FMD+ITNGLD ST+FQI+ LQ +AHIT+AT+ +SLLQP+PE+
Sbjct: 317 KRLTTA-EMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPES 375
Query: 205 FHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYWFH 257
+ LFDDI+LMAEGKI+YHGPR+ VL+FFE CGF+CP+RK V IS+KDQ QYW H
Sbjct: 376 YDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLH 435
Query: 258 NELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKAC 317
LPHSFVSVD ++FK+ G+K+EE LS+ Y S++ K ++SF V+SL +WELF+AC
Sbjct: 436 QNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRAC 495
Query: 318 MSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILI 377
+SRE LL KRNYF+YLFKT QL++ A +TMT+F+RT M++D+ H N +M LF+ V+L+
Sbjct: 496 ISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIHGNSYMSCLFFATVVLL 555
Query: 378 VDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGF 437
VDGI E+ M+++RL+VFYKQK++C YPAWAY IPAT+LK+PLS ESLVWT LTYYVIG+
Sbjct: 556 VDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGY 615
Query: 438 SPELWRW---------VSFEKAFVYFCIESSVDHCAETLKIDQFMCFQLEV--------- 479
+PE +R+ V F ++ CI + + F+ V
Sbjct: 616 TPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYT 675
Query: 480 -----LQYGSSYYLVASLSH-NVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLN 533
L++G + V +S+ + LS N F W+K+ TN T+GR IL+SRGLN
Sbjct: 676 DMPGWLKWG---FWVNPISYAEIGLSVNE----FLAPRWQKMQPTNVTLGRTILESRGLN 728
Query: 534 FDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEH 593
+D+Y +W+SL AL GL ++FN F LALSFLK P SS MIS K S +Q +K S ++
Sbjct: 729 YDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTKDSSVKKN 788
Query: 594 VE-DVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGT 652
D + + + +MILPF+P+T+ FQDL Y +D P+EM+ + KLQLL ++TG
Sbjct: 789 KPLDSSIKTNEDPGKMILPFKPLTITFQDLNYYVDVPVEMKGQGYN-EKKLQLLSEITGA 847
Query: 653 LRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTD 712
RPGVLTALMG+SGAGKTTLLDVLAGRKTSG +GEI+++G+ K+QETF RVSGYCEQTD
Sbjct: 848 FRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARVSGYCEQTD 907
Query: 713 IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772
IHSP IT+EESL +SAWLRL P+IN +TK V VL+TIEL+ IK++LVG+ GVSGLST
Sbjct: 908 IHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDALVGVAGVSGLST 967
Query: 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSID 832
EQRKRLT+ VELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA+TGRTIVCTIHQPSI
Sbjct: 968 EQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVCTIHQPSIH 1027
Query: 833 IFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSAS 892
IFE+FDEL+LLK GGR+IYSGPLG HSS VIEYF+ IPGV +IR+ YNPATWMLEVTS S
Sbjct: 1028 IFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPATWMLEVTSES 1087
Query: 893 TEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSCLWKQ 952
E EL +DF++IY +S LY+NN ELV++LS + DLHF F+QN W QFKSCLWK
Sbjct: 1088 VETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQFKSCLWKM 1147
Query: 953 HLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMN 1012
LSYWR+PSYNLMRI +T +SF+FGLLFWN+GK+I+ QQ+LF +LG++Y +F+G N
Sbjct: 1148 SLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAIYGLVLFVGINN 1207
Query: 1013 CSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYA 1072
C+SAL Y +ER VMYRE+ AGMYS AYA AQV EIPY+ IQ+A +VI+ YPMIGFYA
Sbjct: 1208 CTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSAEFVIVIYPMIGFYA 1267
Query: 1073 SAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQI 1132
S K+FW+ Y +FC+++ F+YL + L++++PN VA+ L S F+TT+++FAGF+IP+PQI
Sbjct: 1268 SFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAGFLIPKPQI 1327
Query: 1133 PKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHLAVVA 1192
PKWW+W YY++PTSWTL +SQYGDI ++I F E KT+ASFLE+YFGFHHD L + A
Sbjct: 1328 PKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGETKTVASFLEDYFGFHHDRLMITA 1387
Query: 1193 VALIVFPVVLASLFAFFVGRLNFQQR 1218
+ LI FP+ LA+++AFFV +LNFQ+R
Sbjct: 1388 IILIAFPIALATMYAFFVAKLNFQKR 1413
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFH0|AB37G_ARATH ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1540 bits (3988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 732/1229 (59%), Positives = 941/1229 (76%), Gaps = 43/1229 (3%)
Query: 24 TGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSG 83
+GE+SYNG++L+EFVPQK SAY+SQYDLHI EMTVRET+DFS CQGVGSR DI++E+S
Sbjct: 231 SGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSK 290
Query: 84 REEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQ 143
RE+E IIPD ++D YMKA SV L+++LQTDY LKILGLDICA+ L+GD +RRGISGGQ
Sbjct: 291 REKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQ 350
Query: 144 KRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPE 203
K+RLTT EM+VGP KA+FMD+ITNGLD ST+FQIV LQ AHI+ AT+L+SLLQP+PE
Sbjct: 351 KKRLTTA-EMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPE 409
Query: 204 TFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYWF 256
++ LFDDI+LMA+G+I+YHGPR VL FFE CGFRCP+RK V IS+KDQAQYW+
Sbjct: 410 SYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWW 469
Query: 257 HNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKA 316
H +LP+SFVSV+M +KFK+ GKK+E+ LS+ Y +S+S K ++SF+V+SL WELF A
Sbjct: 470 HEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIA 529
Query: 317 CMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVIL 376
C+SRE LL KRNYF+Y+FKT QL++ A +TMT+F+RT M +D+ H N +M +LF+ L+IL
Sbjct: 530 CISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALFFALIIL 589
Query: 377 IVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIG 436
+VDG E+ M+ +RLAVFYKQK++C YPAWAY IPAT+LKVPLS ESLVWT L+YYVIG
Sbjct: 590 LVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIG 649
Query: 437 FSPELWRW---------VSFEKAFVYFCIESSVDHCAETLKIDQFMCFQLEV-------- 479
++PE R+ V F ++ C+ + ++ F V
Sbjct: 650 YTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPP 709
Query: 480 ------LQYGSSYYLVASLSH-NVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGL 532
L++G + LS+ + LS N F W ++ N T+GR IL++RG+
Sbjct: 710 PSMPAWLKWG---FWANPLSYGEIGLSVNE----FLAPRWNQMQPNNFTLGRTILQTRGM 762
Query: 533 NFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDE 592
+++ Y +W+SL AL G ++FN F LAL+FLK P SS AMIS K S +Q ++ S +D
Sbjct: 763 DYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQGTEKSTEDS 822
Query: 593 HVEDVDMNAHPNTSQ---MILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDV 649
V ++ T + M+LPF+P+T+ FQDL Y +D P+EMR + KLQLL D+
Sbjct: 823 SVRKKTTDSPVKTEEEDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQGYD-QKKLQLLSDI 881
Query: 650 TGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCE 709
TG RPG+LTALMGVSGAGKTTLLDVLAGRKTSG +G+I+++G+PK+QETF RVSGYCE
Sbjct: 882 TGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCE 941
Query: 710 QTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769
QTDIHSP+IT+EES+ +SAWLRLAP+I++ TK V VL+TIELD IK+SLVG+ GVSG
Sbjct: 942 QTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSG 1001
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 829
LSTEQRKRLTI VELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP
Sbjct: 1002 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 1061
Query: 830 SIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVT 889
SIDIFE+FDEL+LLK GGR+IY+GPLG HS +IEYFE +P +P+I++N+NPATWML+V+
Sbjct: 1062 SIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVS 1121
Query: 890 SASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSCL 949
S S E ELG+DF++IY DS LY+ N ELV+QLS + D+ F F+Q+ WGQFKS L
Sbjct: 1122 SQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSIL 1181
Query: 950 WKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLG 1009
WK +LSYWR+PSYNLMR+++T+ +S +FG LFW +G+ ++ QQ +F + G++Y +FLG
Sbjct: 1182 WKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYGLVLFLG 1241
Query: 1010 SMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIG 1069
NC+SAL Y +ER VMYRE+ AGMYS AYA QV EIPY+ IQAA +VI+TYPMIG
Sbjct: 1242 INNCASALQYFETERNVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIVTYPMIG 1301
Query: 1070 FYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQ 1129
FY SAYK+FW+ Y +FCS+++F+YL + LV+++PN VA+ L S FY ++LF+GF+IPQ
Sbjct: 1302 FYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQ 1361
Query: 1130 PQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHLA 1189
Q+P WWIWLYYL+PTSWTL G ++SQYGDI +EI VF ++ T+A FL++YFGFHHD LA
Sbjct: 1362 TQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINVFGQSTTVARFLKDYFGFHHDLLA 1421
Query: 1190 VVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
V AV I FP+ LAS+FAFFVG+LNFQ+R
Sbjct: 1422 VTAVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC83|AB41G_ARATH ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1421 bits (3678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 691/1225 (56%), Positives = 898/1225 (73%), Gaps = 50/1225 (4%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
V G+VSYNG L EF+P+K S+Y+SQ DLHIPE++VRETLDFS CQG+GSR +I+ E+S
Sbjct: 194 VGGKVSYNGCLLSEFIPEKTSSYISQNDLHIPELSVRETLDFSACCQGIGSRMEIMKEIS 253
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE+ I+PDPDID YMKA SV LK ++QTDY LKILGLDICADT GDA R GISGG
Sbjct: 254 RREKLKEIVPDPDIDAYMKAISVEGLKNSMQTDYILKILGLDICADTRAGDATRPGISGG 313
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QKRRLTTG E++VGP + MD+I+NGLD ST+FQIV+CLQ LAHI ATILISLLQP+P
Sbjct: 314 QKRRLTTG-EIVVGPATTLLMDEISNGLDSSTTFQIVSCLQQLAHIAGATILISLLQPAP 372
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYW 255
ETF LFDD+IL+ EGKI+YH PR + +FFE CGF+CP+RK V +SRKDQ QYW
Sbjct: 373 ETFELFDDVILLGEGKIIYHAPRADICKFFEGCGFKCPERKGVADFLQEVMSRKDQEQYW 432
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
H P+S++SVD F +KF ES G L+E+LS+ + KS+++K S+ F +SLS+WE+ K
Sbjct: 433 CHRSKPYSYISVDSFIKKFNESNLGFLLKEELSKPFDKSQTRKDSLCFRKYSLSKWEMLK 492
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVI 375
AC RE+LL KRN F+YLFK+ L+ A +TMT+FL+ G D H NY MGS+F L
Sbjct: 493 ACSRREILLMKRNSFIYLFKSGLLVFNALVTMTVFLQAGATRDARHGNYLMGSMFTALFR 552
Query: 376 LIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVI 435
L+ DG+ E+ +++ RL VF KQK++ YPAWAY IP+ IL++PLS+++S +WT LTYYVI
Sbjct: 553 LLADGLPELTLTISRLGVFCKQKDLYFYPAWAYAIPSIILRIPLSVLDSFIWTVLTYYVI 612
Query: 436 GFSPELWRW--------------VSFEKAFVYFC---IESSVDHCAETLKIDQFMCFQLE 478
G+SPE+ R+ +S +A C + S+ L + F F +
Sbjct: 613 GYSPEVGRFFRHFIILLTFHLSCISMFRAIASICRTFVACSITGAISVLLLALFGGFVIP 672
Query: 479 VLQY----GSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNF 534
G ++L + L++N F W+K+ N T G ++L RGLNF
Sbjct: 673 KSSMPTWLGWGFWLSPLSYAEIGLTANE----FFSPRWRKLTSGNITAGEQVLDVRGLNF 728
Query: 535 DEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHV 594
+ +W + GAL G L FN + LAL++ P S A++SHGK S C +E
Sbjct: 729 GRHSYWTAFGALVGFVLFFNALYTLALTYRNNPQRSRAIVSHGKNS-------QCSEEDF 781
Query: 595 EDV-DMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTL 653
+ ++ + T ++ILPF+P+T+ FQ++QY I+TP R QLL D+TG L
Sbjct: 782 KPCPEITSRAKTGKVILPFKPLTVTFQNVQYYIETPQGKTR---------QLLFDITGAL 832
Query: 654 RPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDI 713
+PGVLT+LMGVSGAGKTTLLDVL+GRKT G KGEI+V GYPK+QETF RVSGYCEQ DI
Sbjct: 833 KPGVLTSLMGVSGAGKTTLLDVLSGRKTRGIIKGEIRVGGYPKVQETFARVSGYCEQFDI 892
Query: 714 HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773
HSP+IT+EESL +SAWLRL I++KTK + V VL+T+EL+ IK+S+VG+PG+SGLSTE
Sbjct: 893 HSPNITVEESLKYSAWLRLPYNIDAKTKNELVKEVLETVELEDIKDSMVGLPGISGLSTE 952
Query: 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDI 833
QRKRLTI VELV+NPSIIF+DEPTTGLDARAAAIVMRAVKNVA+TGRT+VCTIHQPSIDI
Sbjct: 953 QRKRLTIAVELVSNPSIIFLDEPTTGLDARAAAIVMRAVKNVAETGRTVVCTIHQPSIDI 1012
Query: 834 FESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSAST 893
FE+FDELIL+K GG+++Y GPLG HSS+VI+YFE IPGVP+++ N NPATWML++T S
Sbjct: 1013 FETFDELILMKDGGQLVYYGPLGKHSSKVIKYFESIPGVPKVQKNCNPATWMLDITCKSA 1072
Query: 894 EAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSCLWKQH 953
E LG+DF+Q Y+DS LY+ NK +V QLS++ + L F +R+SQ GWGQ K+CLWKQH
Sbjct: 1073 EHRLGMDFAQAYKDSTLYKENKMVVEQLSSASLGSEALSFPSRYSQTGWGQLKACLWKQH 1132
Query: 954 LSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNC 1013
SYWR PS+NL RI+ + S L LLFW K K+INNQQDLF+I GS+Y IF G NC
Sbjct: 1133 CSYWRNPSHNLTRIVFILLNSLLCSLLFWQKAKDINNQQDLFSIFGSMYTIVIFSGINNC 1192
Query: 1014 SSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYAS 1073
++ + + A+ER V YRE+ A MYS AY+F+QV +E+PY L+Q+ L II YPMIG++ S
Sbjct: 1193 ATVMNFIATERNVFYRERFARMYSSWAYSFSQVLVEVPYSLLQSLLCTIIVYPMIGYHMS 1252
Query: 1074 AYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIP 1133
YK+FW+ Y IFCS++ F+Y G+L+VAL+PN+ +A TL S F++ +LFAGFV+P+ +IP
Sbjct: 1253 VYKMFWSLYSIFCSLLIFNYCGMLMVALTPNIHMALTLRSTFFSMVNLFAGFVMPKQKIP 1312
Query: 1134 KWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHLAVVAV 1193
KWWIW+YYLSPTSW LEGLL+SQYGD++KEI VF E K++++FLE+YFG+ HD LAVVA
Sbjct: 1313 KWWIWMYYLSPTSWVLEGLLSSQYGDVEKEITVFGEKKSVSAFLEDYFGYKHDSLAVVAF 1372
Query: 1194 ALIVFPVVLASLFAFFVGRLNFQQR 1218
LI FP+++ASLFAFF+ +LNFQ++
Sbjct: 1373 VLIAFPIIVASLFAFFMSKLNFQKK 1397
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC81|AB43G_ARATH ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1410 bits (3650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/1226 (56%), Positives = 897/1226 (73%), Gaps = 63/1226 (5%)
Query: 25 GEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGR 84
GEVSYNG+ EFVP+K S+YVSQ DLHIPE++VRETLDFS QG GSR +++ E+S R
Sbjct: 196 GEVSYNGHLFSEFVPEKTSSYVSQNDLHIPELSVRETLDFSGCFQGAGSRLEMMKEISRR 255
Query: 85 EEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQK 144
E+ I+PDPDID YMKA S+ K NLQTDY LKILGL ICADT VGDA R GISGGQK
Sbjct: 256 EKLKGIVPDPDIDAYMKAASIEGSKTNLQTDYILKILGLTICADTRVGDASRPGISGGQK 315
Query: 145 RRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 204
RRLTTG EM+VGPIK +FMD+I+NGLD ST+FQI++CLQ A +++ TIL+SLLQP+PET
Sbjct: 316 RRLTTG-EMIVGPIKTLFMDEISNGLDSSTTFQILSCLQQFARLSEGTILVSLLQPAPET 374
Query: 205 FHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYWFH 257
F LFDD+ILM EGKI+YHGPR+ + FFE CGF+CP RK+V ISRKDQ QYW H
Sbjct: 375 FELFDDLILMGEGKIIYHGPRDFICSFFEDCGFKCPQRKSVAEFLQEVISRKDQEQYWCH 434
Query: 258 NELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKAC 317
+ P+ +VS+D F EKFK+S G +L+++LS+ Y KS+++K + +SLS W++FKAC
Sbjct: 435 RDKPYCYVSIDSFIEKFKKSDLGLQLQDELSKTYDKSQTQKDGLCIRKYSLSNWDMFKAC 494
Query: 318 MSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILI 377
RE LL KRN F+Y+FK+ LI I ++ MT++LRTG D HANY MGSLF++L+ L+
Sbjct: 495 SRREFLLMKRNSFVYVFKSGLLIFIGSIAMTVYLRTGSTRDSLHANYLMGSLFFSLIKLL 554
Query: 378 VDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGF 437
DG+ E+ +++ R+AVF KQKE+ YPAWAY IP+ ILK+P+S +ES +WT LTYYVIG+
Sbjct: 555 ADGLPELTLTVSRIAVFCKQKELYFYPAWAYAIPSAILKIPISFLESFLWTMLTYYVIGY 614
Query: 438 SPELWRWV------------------SFEKAFVYFCIESSVDHCAETLKIDQFMCFQLEV 479
SPE R++ + F F + +++ + L + F F +
Sbjct: 615 SPEAGRFIRQVLILFALHLSCISMFRAIGAVFRDFDVATTIGSISIVL-LSVFGGFIVRK 673
Query: 480 ------LQYGSSYYLVASLSH-NVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGL 532
L++G + ++ LS+ + L+SN F W+K+ N T+G ++L +RGL
Sbjct: 674 PSMPSWLEWG---FWLSPLSYAEIGLTSNE----FFAPMWRKMTSENRTLGEQVLDARGL 726
Query: 533 NFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDE 592
NF +W + GAL G L FN FALAL+FLK S ++SH K ++ S D
Sbjct: 727 NFGNQSYWNAFGALIGFTLFFNTVFALALTFLKTSQRSRVIVSHDK-----NTQSSEKDS 781
Query: 593 HVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGT 652
+ NA LPF+P+T FQD+QY I+TP KLQLL DVTG
Sbjct: 782 KIASHSKNA--------LPFEPLTFTFQDVQYFIETPQ---------GKKLQLLSDVTGA 824
Query: 653 LRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTD 712
+PGVLTALMGVSGAGKTTLLDVL+GRKT G KG+I+V GY K+Q+TF RVSGYCEQ D
Sbjct: 825 FKPGVLTALMGVSGAGKTTLLDVLSGRKTRGDIKGQIEVGGYVKVQDTFSRVSGYCEQFD 884
Query: 713 IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772
IHSP++T++ESL +SAWLRL I+S+TK+ VN VL+TIEL+ IK+SLVG+PG+SG++
Sbjct: 885 IHSPNLTVQESLKYSAWLRLPCNISSETKSAIVNEVLETIELEEIKDSLVGVPGISGVTA 944
Query: 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSID 832
EQRKRLTI VELV+NPSIIFMDEPTTGLDARAAAIVMRAVKN+A+TGRT+VCTIHQPSID
Sbjct: 945 EQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNIAETGRTVVCTIHQPSID 1004
Query: 833 IFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSAS 892
IFE+FDELIL+K GG+IIY GPLG HSS+VIEYF IPGVP+++ N NPATW+L++TS S
Sbjct: 1005 IFEAFDELILMKNGGKIIYYGPLGQHSSKVIEYFMSIPGVPKLKENSNPATWILDITSKS 1064
Query: 893 TEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSCLWKQ 952
+E +LG+D + IYE+S L++ NK ++ Q + + L ++R++Q W QFK+CLWKQ
Sbjct: 1065 SEDKLGVDLAHIYEESTLFKENKMVIEQTRCTSLGSERLILSSRYAQTSWEQFKACLWKQ 1124
Query: 953 HLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMN 1012
HLSYWR PSYNL RI+ L G+LF K KEINNQQDLFN+ GS++ +F G N
Sbjct: 1125 HLSYWRNPSYNLTRIIFMCFTCMLCGILFLQKAKEINNQQDLFNVFGSMFTVVLFSGINN 1184
Query: 1013 CSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYA 1072
CS+ + A+ER V YRE+ + MY+P AY+ AQV +EIPY L Q+ +YVII YPM+G++
Sbjct: 1185 CSTVIFCVATERNVFYRERFSRMYNPWAYSLAQVLVEIPYSLFQSIIYVIIVYPMVGYHW 1244
Query: 1073 SAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQI 1132
S YK+FW+FY IFCS++ F+Y G+LLV ++PNV +A TL S+FY +LFAG+V+P+P I
Sbjct: 1245 SVYKVFWSFYSIFCSLLIFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNI 1304
Query: 1133 PKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHLAVVA 1192
P+WWIW+YYLSPTSW L GLLTSQYGD++KEI+ F E K +++FLE+YFG+ +D LA+VA
Sbjct: 1305 PRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEILAFGEKKKVSAFLEDYFGYRYDSLALVA 1364
Query: 1193 VALIVFPVVLASLFAFFVGRLNFQQR 1218
V LI FP++LASLFAFF+G+LNFQ++
Sbjct: 1365 VVLIAFPILLASLFAFFIGKLNFQKK 1390
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GZ52|AB30G_ARATH ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1408 bits (3644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/1225 (56%), Positives = 890/1225 (72%), Gaps = 50/1225 (4%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
V GEV YNG L EF+P+K S+Y+SQ DLHIPE++VRETLDFS CQG+GSR +I+ E+S
Sbjct: 197 VGGEVCYNGCSLSEFIPEKTSSYISQNDLHIPELSVRETLDFSACCQGIGSRMEIMKEIS 256
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
E+ IIPDP +D YMKATSV LK NLQTDY LKILGLDICADT VGDA R GISGG
Sbjct: 257 RMEKLQEIIPDPAVDAYMKATSVEGLKNNLQTDYILKILGLDICADTRVGDATRPGISGG 316
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
+KRRLTTG E++VGP +FMD+I+NGLD ST+FQIV+CLQ LAHI +ATILISLLQP+P
Sbjct: 317 EKRRLTTG-ELVVGPATTLFMDEISNGLDSSTTFQIVSCLQQLAHIAEATILISLLQPAP 375
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYW 255
ETF LFDD+ILM EGKI+YH PR + FFE GF+CP+RK V +S+KDQ QYW
Sbjct: 376 ETFELFDDVILMGEGKIIYHAPRADICRFFEEFGFKCPERKGVADFLQEIMSKKDQEQYW 435
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
H + P+S++SVD F KFKES G L+E+LS+ + KS+++K + + +SL +WE+ K
Sbjct: 436 CHRDKPYSYISVDSFINKFKESNLGLLLKEELSKPFNKSQTRKDGLCYKKYSLGKWEMLK 495
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVI 375
AC RE LL KRN F+YLFK+ L+ A +TMT+FL+ G D H NY MGSLF L
Sbjct: 496 ACSRREFLLMKRNSFIYLFKSALLVFNALVTMTVFLQVGATTDSLHGNYLMGSLFTALFR 555
Query: 376 LIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVI 435
L+ DG+ E+ +++ RL VF KQK++ YPAWAY IP+ ILK+PLS+++S +WT LTYYVI
Sbjct: 556 LLADGLPELTLTISRLGVFCKQKDLYFYPAWAYAIPSIILKIPLSVLDSFIWTLLTYYVI 615
Query: 436 GFSPELWRW--------------VSFEKAFVYF---CIESSVDHCAETLKIDQFMCFQLE 478
G+SPE+ R+ VS +A I S++ L + F F +
Sbjct: 616 GYSPEVKRFFLQFLILSTFNLSCVSMFRAIAAIFRTIIASTITGAISILVLSLFGGFVIP 675
Query: 479 VLQY----GSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNF 534
G ++L + L++N F W K++ + TT G ++L RGLNF
Sbjct: 676 KSSMPAWLGWGFWLSPLSYAEIGLTANE----FFSPRWSKVISSKTTAGEQMLDIRGLNF 731
Query: 535 DEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFS-GIQRSKGSCDDEH 593
+ +W + GAL G L FN + LAL++ P S A+ISH K+S I+ C
Sbjct: 732 GRHSYWTAFGALVGFVLFFNALYVLALTYQNNPQRSRAIISHEKYSRPIEEDFKPCPK-- 789
Query: 594 VEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTL 653
+ + T ++ILPF+P+T+ FQ++QY I+TP R QLL D+TG L
Sbjct: 790 -----ITSRAKTGKIILPFKPLTVTFQNVQYYIETPQGKTR---------QLLSDITGAL 835
Query: 654 RPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDI 713
+PGVLT+LMGVSGAGKTTLLDVL+GRKT G KGEIKV GYPK+QETF RVSGYCEQ DI
Sbjct: 836 KPGVLTSLMGVSGAGKTTLLDVLSGRKTRGIIKGEIKVGGYPKVQETFARVSGYCEQFDI 895
Query: 714 HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773
HSP+IT+EESL +SAWLRL I+SKTK + V VL+T+ELD IK+S+VG+PG+SGLS E
Sbjct: 896 HSPNITVEESLKYSAWLRLPYNIDSKTKNELVKEVLETVELDDIKDSVVGLPGISGLSIE 955
Query: 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDI 833
QRKRLTI VELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA+TGRT+VCTIHQPSIDI
Sbjct: 956 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTVVCTIHQPSIDI 1015
Query: 834 FESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSAST 893
FE+FDELIL+K GG+++Y GP G +SS+VIEYFE G+P+I+ N NPATW+L++TS S
Sbjct: 1016 FETFDELILMKNGGQLVYYGPPGQNSSKVIEYFESFSGLPKIQKNCNPATWILDITSKSA 1075
Query: 894 EAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSCLWKQH 953
E +LG+DFSQ Y+DS LY+ NK +V QLS++ + L F ++FSQ W Q K+CLWKQH
Sbjct: 1076 EEKLGIDFSQSYKDSTLYKQNKMVVEQLSSASLGSEALRFPSQFSQTAWVQLKACLWKQH 1135
Query: 954 LSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNC 1013
SYWR PS+N+ RI+ + S L GLLFW K ++INNQQDL +I GS+Y +F G NC
Sbjct: 1136 YSYWRNPSHNITRIVFILLDSTLCGLLFWQKAEDINNQQDLISIFGSMYTLVVFPGMNNC 1195
Query: 1014 SSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYAS 1073
++ + + A+ER V YRE+ A MYS AY+F+QV IE+PY L+Q+ L II YP IG++ S
Sbjct: 1196 AAVINFIAAERNVFYRERFARMYSSWAYSFSQVLIEVPYSLLQSLLCTIIVYPTIGYHMS 1255
Query: 1074 AYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIP 1133
YK+FW+ Y IFCS++ F+Y G+L+VAL+PN+ +A TL S+F++ +LFAGFVIP+ +IP
Sbjct: 1256 VYKMFWSLYSIFCSLLIFNYSGMLMVALTPNIHMAVTLRSSFFSMLNLFAGFVIPKQKIP 1315
Query: 1134 KWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHLAVVAV 1193
KWWIW+YYLSPTSW LEGLL+SQYGD+DKEI+VF E K +++FLE+YFG+ H+ LAVVA
Sbjct: 1316 KWWIWMYYLSPTSWVLEGLLSSQYGDVDKEILVFGEKKRVSAFLEDYFGYKHESLAVVAF 1375
Query: 1194 ALIVFPVVLASLFAFFVGRLNFQQR 1218
LI +P+++A+LFAFF+ +L+FQ++
Sbjct: 1376 VLIAYPIIVATLFAFFMSKLSFQKK 1400
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC82|AB42G_ARATH ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1396 bits (3614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 686/1226 (55%), Positives = 892/1226 (72%), Gaps = 63/1226 (5%)
Query: 25 GEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGR 84
G++SYNG+ EFVP+K S+YVSQ DLHIPE++VRETLDFS QG GSR ++ E+S R
Sbjct: 198 GDISYNGHLFSEFVPEKTSSYVSQNDLHIPELSVRETLDFSGCFQGTGSRLEMTKEISRR 257
Query: 85 EEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQK 144
E+ I+PDPDID YMKA S+ K NLQTDY LKILGL ICADT VGDA R GISGGQK
Sbjct: 258 EKLKGIVPDPDIDAYMKAASIEGSKTNLQTDYILKILGLTICADTRVGDASRPGISGGQK 317
Query: 145 RRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPET 204
RRLTTG EM+VGPIK +FMD+I+NGLD ST+FQI++CLQ A +++ TIL+SLLQP+PET
Sbjct: 318 RRLTTG-EMIVGPIKTLFMDEISNGLDSSTTFQILSCLQQFARLSEGTILVSLLQPAPET 376
Query: 205 FHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYWFH 257
F LFDD+ILM EGKI+YHGPR+ V FFE CGF+CP+RK+V ISRKDQ QYW H
Sbjct: 377 FELFDDLILMGEGKIIYHGPRDFVCSFFEDCGFKCPNRKSVAEFLQEVISRKDQEQYWCH 436
Query: 258 NELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKAC 317
E + +VS++ F EKFK+S G +L++ LS+ Y KS+++K + F +SLS W++ KAC
Sbjct: 437 IEKTYCYVSIESFIEKFKKSDLGLELQDRLSKTYDKSQTQKDGLCFRKYSLSNWDMLKAC 496
Query: 318 MSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILI 377
RE LL KRN F+Y+FK+ LI I + MT++LRTG D HANY MGSLF++L L+
Sbjct: 497 SRREFLLMKRNSFVYVFKSGLLIFIGFIAMTVYLRTGSTRDSLHANYLMGSLFFSLFKLL 556
Query: 378 VDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGF 437
DG+ E+ +++ R+AVF KQKE+ YPAWAY IP+ ILK+P+S +ES +WT LTYYVIG+
Sbjct: 557 ADGLPELTLTISRIAVFCKQKELYFYPAWAYAIPSAILKIPISFLESFLWTMLTYYVIGY 616
Query: 438 SPELWRWV------------------SFEKAFVYFCIESSVDHCAETLKIDQFMCFQLEV 479
SPE+ R++ + F F + ++V + L + F F +
Sbjct: 617 SPEMGRFIRQFLILFALHLSCISMFRAIAAVFRDFVVATTVGSISIVL-LSVFGGFIVRK 675
Query: 480 ------LQYGSSYYLVASLSH-NVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGL 532
L++G + ++ LS+ + L++N F W KI N T+G ++L +RGL
Sbjct: 676 PSMPSWLEWG---FWLSPLSYAEIGLTANE----FFAPRWGKITSENRTLGEQVLDARGL 728
Query: 533 NFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDE 592
NF +W + GAL G L FN FALAL+FLK S ++SH K ++ S +D
Sbjct: 729 NFGNQSYWNAFGALIGFTLFFNTVFALALTFLKTSQRSRVIVSHEK-----NTQSSENDS 783
Query: 593 HVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGT 652
+ NA LPF+P+T FQD+QY I+TP KLQLL VTG
Sbjct: 784 KIASRFKNA--------LPFEPLTFTFQDVQYIIETPQ---------GKKLQLLSGVTGA 826
Query: 653 LRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTD 712
+PGVLTALMGVSGAGKTTLLDVL+GRKT G KG+I+V GY K+Q+TF RVSGYCEQ D
Sbjct: 827 FKPGVLTALMGVSGAGKTTLLDVLSGRKTFGDIKGQIEVGGYVKVQDTFSRVSGYCEQFD 886
Query: 713 IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772
IHSP++T++ESL +SAWLRL I+S+TK VN VL+TIEL+ IK+S+VGIPG+SGL+T
Sbjct: 887 IHSPNLTVQESLKYSAWLRLTSNISSETKCAIVNEVLETIELEEIKDSIVGIPGISGLTT 946
Query: 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSID 832
EQRKRLTI VELV+NPSIIFMDEPTTGLDARAAAIVMRAVKN+A+TGRT+VCTIHQPSID
Sbjct: 947 EQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNIAETGRTVVCTIHQPSID 1006
Query: 833 IFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSAS 892
IFE+FDELIL+K GG+IIY GPLG HSS+VIEYF I GVP+++ N NPATW+L++TS S
Sbjct: 1007 IFEAFDELILMKNGGKIIYYGPLGQHSSKVIEYFMRIHGVPKLKENSNPATWILDITSKS 1066
Query: 893 TEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSCLWKQ 952
+E +LG+D +Q+YE+S L++ NK ++ Q + + L ++R++Q W QFK+CLWKQ
Sbjct: 1067 SEDKLGVDLAQMYEESTLFKENKMVIEQTRCTSLGSERLILSSRYAQTSWEQFKACLWKQ 1126
Query: 953 HLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMN 1012
HLSYWR PSYNL RI+ L G+LFW K KEINNQQDLFN+ GS++ +F G N
Sbjct: 1127 HLSYWRNPSYNLTRIIFMSFTCMLCGILFWQKAKEINNQQDLFNVFGSMFTVVLFSGINN 1186
Query: 1013 CSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYA 1072
CS+ L A+ER V YRE+ + MY+ AY+ AQV +EIPY L Q+ +YVII YPM+G++
Sbjct: 1187 CSTVLFSVATERNVFYRERFSRMYNSWAYSLAQVLVEIPYSLFQSIVYVIIVYPMVGYHW 1246
Query: 1073 SAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQI 1132
S +K+FW+FY IFC+++ F+Y G+LLV ++PNV +A TL S+FY +LFAG+V+P+P I
Sbjct: 1247 SVFKVFWSFYSIFCTLLIFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNI 1306
Query: 1133 PKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHLAVVA 1192
P+WWIW+YYLSPTSW L GLLTSQYGD++KEI+ F E K ++ FLE+YFG+ +D LA+VA
Sbjct: 1307 PRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEILAFGEKKKVSDFLEDYFGYRYDSLALVA 1366
Query: 1193 VALIVFPVVLASLFAFFVGRLNFQQR 1218
V LI FP++LASLFAFF+G+LNFQ++
Sbjct: 1367 VVLIAFPILLASLFAFFIGKLNFQKK 1392
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIE2|AB36G_ARATH ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1218 bits (3151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/1255 (48%), Positives = 849/1255 (67%), Gaps = 71/1255 (5%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
V+G+++YNGY+L+EFVP+K SAY+SQ DLH+ MTV+ETLDFS CQGVG+R D+L EL+
Sbjct: 227 VSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYDLLNELA 286
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE++A I P+ D+D +MKA++ +K +L TDY LKILGLDIC DT+VGD + RGISGG
Sbjct: 287 RREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDTIVGDDMMRGISGG 346
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QK+R+TTG EM+VGP K +FMD+I+ GLD ST+FQIV CLQ + H+ +AT+L+SLLQP+P
Sbjct: 347 QKKRVTTG-EMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNEATVLMSLLQPAP 405
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKA-------VISRKDQAQYW 255
ETF LFDDIIL++EG+I+Y GPR+++LEFFES GF+CP+RK V S+KDQ QYW
Sbjct: 406 ETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQEVTSKKDQEQYW 465
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
+ P+ ++ V F ++K G K+ +L+ + KS K+++ F +S+S+ EL K
Sbjct: 466 VNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVFDKYSVSKRELLK 525
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEV-DVFHANYFMGSLFYTLV 374
+C +E LL +RN F Y+FKT+Q++IIA +T TLFLRT M + AN ++G+L + ++
Sbjct: 526 SCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDANLYIGALLFGMI 585
Query: 375 ILIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYV 434
I + +G +E+ M + RL VFYKQ+++ YP+W + +P +L +P S++ES W +TYY
Sbjct: 586 INMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILESTAWMVVTYYS 645
Query: 435 IGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCFQLEVLQYGSSY-------- 486
IGF+P+ R+ F++ + F I+ A ++ +C + + G +
Sbjct: 646 IGFAPDASRF--FKQFLLVFLIQQ---MAASLFRLIASVCRTMMIANTGGALTLLLVFLL 700
Query: 487 -----------------YLVASLSHNVRLSSNNMIV--YFKLIHWKKILFTNTTI--GRE 525
Y V+ L++ + N ++V F K+ +N+TI G
Sbjct: 701 GGFLLPKGKIPDWWGWAYWVSPLTY----AFNGLVVNEMFAPRWMNKMASSNSTIKLGTM 756
Query: 526 ILKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMI--------SHG 577
+L + + + ++WIS+GAL +FN F LAL++L P G ++ G
Sbjct: 757 VLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENEDADQG 816
Query: 578 KFSGIQRSKGSCDDEHVEDVDMN------------AHPNTSQMILPFQPITMVFQDLQYS 625
K ++RS + D +V M N M+LPF P+ M F D++Y
Sbjct: 817 K-DPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKGMVLPFTPLAMSFDDVKYF 875
Query: 626 IDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCF 685
+D P EMR + +LQLL VTG RPGVLTALMGVSGAGKTTL+DVLAGRKT G
Sbjct: 876 VDMPGEMRDQGV-TETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 934
Query: 686 KGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCV 745
+G+++++G+PK+QETF R+SGYCEQTDIHSP +T+ ESL FSA+LRL ++ K V
Sbjct: 935 EGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFV 994
Query: 746 NHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAA 805
+ V++ +ELD +++S+VG+PGV+GLSTEQRKRLTI VELVANPSIIFMDEPT+GLDARAA
Sbjct: 995 DQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1054
Query: 806 AIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEY 865
AIVMRAV+N DTGRT+VCTIHQPSIDIFE+FDEL+L+K GG++IY+GPLG +S +V+EY
Sbjct: 1055 AIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKVVEY 1114
Query: 866 FEGIPGVPQIRNNYNPATWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSG 925
FE PGV +I YNPATWMLE +S + E +L +DF+++Y S L++ NK LV++LS
Sbjct: 1115 FESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKELSVPP 1174
Query: 926 GAARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKG 985
A DL+F T+FSQN WGQFKSCLWKQ +YWR+P YNL+R + T+A S L G +FW G
Sbjct: 1175 AGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVFWQIG 1234
Query: 986 KEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQ 1045
+N DL ++G+LYA+ IF+G NCS+ P A ERTV YRE++AGMYS + YA +Q
Sbjct: 1235 GNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAMPYAISQ 1294
Query: 1046 VTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNV 1105
VT E+PY+LIQ Y +I Y M+GF A K FW + + S + ++Y G++ V+L+PN
Sbjct: 1295 VTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLTPNQ 1354
Query: 1106 TVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIM 1165
VAS SAFY ++LF+GF IP+P+IPKWWIW Y++ P +WT+ GL+ SQYGD++ I
Sbjct: 1355 QVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQ 1414
Query: 1166 VF--IENKTIASFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
V + T+ ++E+++GF D + VA LI F V A +FAF + LNFQ R
Sbjct: 1415 VLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
|
Key factor that controls the extent of cell death in the defense response. Neccessary for both callose deposition and glucosinolate activation in response to pathogens. Required for limiting invasion by nonadapted powdery mildews. Confers resistance to cadmium (Cd) and lead (Pb), probably as an efflux pump of Cd2+ or Cd conjugates, and possibly, of chemicals that mediate pathogen resistance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC86|AB35G_ARATH ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1214 bits (3140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/1233 (49%), Positives = 850/1233 (68%), Gaps = 52/1233 (4%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
V+GEV+YNGY+L EFVP K SAY+SQ DLH+ MTV+ETLDFS CQGVG+R D+L EL+
Sbjct: 225 VSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYDLLNELA 284
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE++A I P+ D+D +MKA++ +K +L TDY LKILGLDIC DT+VGD + RGISGG
Sbjct: 285 RREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVGDDMMRGISGG 344
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QK+R+TTG EM+VGP K +FMD+I+ GLD ST+FQIV CLQ + H+T+AT+LISLLQP+P
Sbjct: 345 QKKRVTTG-EMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATVLISLLQPAP 403
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKA-------VISRKDQAQYW 255
ETF LFDDIIL++EG+I+Y GPR+ +LEFFES GF+CP+RK V S+KDQ QYW
Sbjct: 404 ETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVTSKKDQEQYW 463
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
P+ ++ V F FK+ G KL +LS Y KS+S K+++ F +S+ + EL K
Sbjct: 464 VDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKYSIKKTELLK 523
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEV-DVFHANYFMGSLFYTLV 374
+C +E +L KRN F Y+FKT+Q+IIIA +T TL+LRT M + AN ++GSL + ++
Sbjct: 524 SCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIYVGSLLFAMI 583
Query: 375 ILIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYV 434
+ + +G++E+ M+++RL VFYKQ+++ +P W Y +P +L +P+S+ ES W +TYY
Sbjct: 584 VNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFESTAWMVVTYYS 643
Query: 435 IGFSPELWRWVSFEKAFVYFCIESS-------VDHCAETLKIDQ---------------F 472
IG++P+ R+ F++ + F I+ + T+ I F
Sbjct: 644 IGYAPDAERF--FKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLVVFLTGGF 701
Query: 473 MCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLI--HWKKILFTNTT--IGREILK 528
+ + E+ + Y ++ LS+ + N I +L W + N+T +G +L
Sbjct: 702 LLPRSEIPVWWRWAYWISPLSY-----AFNAITVNELFAPRWMNKMSGNSTTRLGTSVLN 756
Query: 529 SRGLNFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGS 588
+ D+ ++WI +G L G ++FN F LAL++L P G + A++ + + GS
Sbjct: 757 IWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEEDEEAKGKAGS 816
Query: 589 CDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAH-KLQLLD 647
+ +E V M+LPF P+ M F D++Y +D P EMR E G+ +LQLL
Sbjct: 817 NKETEMESVSAKKG-----MVLPFTPLAMSFDDVKYFVDMPAEMR--EQGVQETRLQLLK 869
Query: 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGY 707
VT RPGVLTALMGVSGAGKTTL+DVLAGRKT G +G+++V+G+PK QETF R+SGY
Sbjct: 870 GVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKKQETFARISGY 929
Query: 708 CEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767
CEQTDIHSP +T+ ESL FSA+LRLA +++ + K V+ V++ +EL +++++VG+PGV
Sbjct: 930 CEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVDLRDAIVGLPGV 989
Query: 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIH 827
+GLSTEQRKRLTI VELVANPSIIFMDEPT+GLDARAAAIVMRAV+N DTGRT+VCTIH
Sbjct: 990 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 1049
Query: 828 QPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLE 887
QPSIDIFE+FDEL+L+K GG +IYSGPLG +S +V+EYFE PGVP+I YNPATWMLE
Sbjct: 1050 QPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWMLE 1109
Query: 888 VTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKS 947
+S + E +LG+DF+++Y+ S L + NK LV++LS A DL+F T+FSQN WGQFKS
Sbjct: 1110 ASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFKS 1169
Query: 948 CLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIF 1007
CLWKQ +YWR+P YNL+R + T+A S + G +FW G + +N QDL ++G++YA+ +F
Sbjct: 1170 CLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLTMVIGAIYAAVVF 1229
Query: 1008 LGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPM 1067
+G NCS+ P A ERTV YRE++AGMYS + YA +QVT E+PY+LIQ Y +I Y M
Sbjct: 1230 VGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCELPYVLIQTTYYSLIIYSM 1289
Query: 1068 IGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVI 1127
+GF A K W + + S + ++Y G++ V+L+PN VAS SAFY ++LF+GF I
Sbjct: 1290 VGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFI 1349
Query: 1128 PQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVF--IENKTIASFLEEYFGFHH 1185
P+P+IPKWW+W Y++ P +WT+ GL+TSQYGD++ I + T+ ++++ +GF
Sbjct: 1350 PRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQYGFES 1409
Query: 1186 DHLAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
D++ VA L+ F V A +FAF + LNFQ R
Sbjct: 1410 DYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1213 bits (3139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/1230 (49%), Positives = 835/1230 (67%), Gaps = 46/1230 (3%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
VTG+VSYNG++L EFVPQ+ +AY+SQ+DLHI EMTVRETL+FS CQGVGSR ++L ELS
Sbjct: 217 VTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGVGSRFEMLAELS 276
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE+ A I PD DID YMKA + + N+ TDY LKILGLDICADT+VGD + RGISGG
Sbjct: 277 RREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMVGDDMIRGISGG 336
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QK+R+TTG EMLVGP KA+FMD+I+ GLD ST++ IV L+ I T +ISLLQP+P
Sbjct: 337 QKKRVTTG-EMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGTAVISLLQPAP 395
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYW 255
ET++LFDDIIL+++G I+Y GPR+ VLEFFES GF+CP RK V S+KDQ QYW
Sbjct: 396 ETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEVTSKKDQQQYW 455
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
P+ F++ F E ++ G+KL ++L+ + K++ ++++ + + + EL K
Sbjct: 456 SKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEKYGIGKKELLK 515
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFH-ANYFMGSLFYTLV 374
C RELLL KRN F+Y+FK QL I+A +TMTLF RT M D + G+LF+ ++
Sbjct: 516 VCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGIYAGALFFVVI 575
Query: 375 ILIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYV 434
+++ +G+SE+ M++ +L VFYKQ+++ +P+WAY IP+ ILK+P++LVE +W LTYYV
Sbjct: 576 MIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEVGLWVILTYYV 635
Query: 435 IGFSPELWRWVSFEKAFVYFCIESS--------VDHCAETLKI-DQFMCFQLEVLQYG-- 483
IGF P + R F K F+ + + + T+ + F F L +LQ+
Sbjct: 636 IGFDPNITR---FLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFAL-LLQFALG 691
Query: 484 ---------SSYYLVASLSHNVRLSSNNMIVY-FKLIHWKKIL-FTNTTIGREILKSRGL 532
S+++ + S N+++V F W I+ N T+G ++KSRG
Sbjct: 692 GFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTVVKSRGF 751
Query: 533 NFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDE 592
+ Y++WI +GAL G +VFNF ++LAL++L P A++ G G +
Sbjct: 752 FPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPE---DGENAENGEVSSQ 808
Query: 593 HVE----DVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDD 648
D + N M+LPF+P ++ F D+ YS+D P EM+ + G +L LL
Sbjct: 809 ITSTDGGDSISESQNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAG-EDRLVLLKG 867
Query: 649 VTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYC 708
V+G RPGVLTALMGVSGAGKTTL+DVLAGRKT G GEIK++GYPK QETF R+SGYC
Sbjct: 868 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYC 927
Query: 709 EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768
EQ DIHSP++T+ ESL +SAWLRL ++ KT+ V+ V++ +EL ++ +LVG+PGV+
Sbjct: 928 EQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVN 987
Query: 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQ 828
GLSTEQRKRLTI VELVANPSIIFMDEPT+GLDARAAAIVMR V+N DTGRT+VCTIHQ
Sbjct: 988 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1047
Query: 829 PSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEV 888
PSIDIFE+FDEL L+K GG+ IY GPLG HS +I+YFE PGV +I+ YNPATWMLEV
Sbjct: 1048 PSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEV 1107
Query: 889 TSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSC 948
T+++ E LG+DF+++Y++S LY NK L+ +L ++DLHF T++SQ+ W Q +C
Sbjct: 1108 TASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVAC 1167
Query: 949 LWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFL 1008
LWKQH SYWR P+Y +R + T + +FG +FW+ G +++ QDL N +GS+YA+ +FL
Sbjct: 1168 LWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFL 1227
Query: 1009 GSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMI 1068
G N SS P A ERTV YRE++AGMYS + YAF QV+IEIPY+ +Q+ Y II Y MI
Sbjct: 1228 GVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMI 1287
Query: 1069 GFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIP 1128
GF K FW + +F +++ F++ G++ VA++PN VAS + + FY ++LF+GF+IP
Sbjct: 1288 GFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIP 1347
Query: 1129 QPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHL 1188
+P++P WW W Y+ +P +WTL GL+ SQ+GDI ++ +N+T+ FL YFGF HD L
Sbjct: 1348 RPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLS---DNETVEQFLRRYFGFKHDFL 1404
Query: 1189 AVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
VVA L + + A FAF + NFQ+R
Sbjct: 1405 GVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1218 | ||||||
| 296089838 | 1406 | unnamed protein product [Vitis vinifera] | 0.974 | 0.844 | 0.661 | 0.0 | |
| 225450466 | 1448 | PREDICTED: pleiotropic drug resistance p | 0.974 | 0.819 | 0.661 | 0.0 | |
| 255542838 | 1458 | ATP-binding cassette transporter, putati | 0.974 | 0.814 | 0.631 | 0.0 | |
| 75321780 | 1447 | RecName: Full=Pleiotropic drug resistanc | 0.972 | 0.818 | 0.638 | 0.0 | |
| 147780242 | 1417 | hypothetical protein VITISV_037751 [Viti | 0.949 | 0.815 | 0.648 | 0.0 | |
| 224099040 | 1476 | predicted protein [Populus trichocarpa] | 0.971 | 0.801 | 0.610 | 0.0 | |
| 224112072 | 1455 | predicted protein [Populus trichocarpa] | 0.973 | 0.815 | 0.611 | 0.0 | |
| 297823555 | 1424 | predicted protein [Arabidopsis lyrata su | 0.973 | 0.832 | 0.608 | 0.0 | |
| 297816648 | 1450 | ATPDR9/PDR9 [Arabidopsis lyrata subsp. l | 0.973 | 0.817 | 0.604 | 0.0 | |
| 359477643 | 1492 | PREDICTED: pleiotropic drug resistance p | 0.967 | 0.790 | 0.609 | 0.0 |
| >gi|296089838|emb|CBI39657.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1675 bits (4339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 816/1233 (66%), Positives = 990/1233 (80%), Gaps = 46/1233 (3%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
VTGEVSYNGY++EEFVPQK SAY+SQYDLHIPEMTVRET+DFS CQGVGSRA+ + E+S
Sbjct: 183 VTGEVSYNGYRMEEFVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRAETMSEVS 242
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE++A I+PDPDIDTYMKA SV LK+ LQTDY LKILGLDICADT+VGDA+RRGISGG
Sbjct: 243 RREKQAGIVPDPDIDTYMKAISVEGLKRTLQTDYILKILGLDICADTMVGDAMRRGISGG 302
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QK+RLTTG EM+VGP +A+FMD+I+NGLD ST+FQIV L+ L HI DATIL+SLLQP+P
Sbjct: 303 QKKRLTTG-EMIVGPTRALFMDEISNGLDSSTTFQIVAYLRQLVHIIDATILVSLLQPAP 361
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYW 255
ETF LFDDIILMAEG I+YHGP +LEFFE CGFRCP+RK V ISR+DQAQYW
Sbjct: 362 ETFDLFDDIILMAEGIIVYHGPCSHILEFFEDCGFRCPERKGVADFLQEVISRRDQAQYW 421
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
+H E HS+VSV F KFKESPFGKKLEE LS+ + KS S K+++SF+ +SLS+WELF+
Sbjct: 422 YHTEQAHSYVSVHTFSRKFKESPFGKKLEEKLSKPFDKSHSHKNALSFSKYSLSKWELFR 481
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVI 375
ACMSRE LL KRN F+Y+FK+ QL+IIA +TMT+FLRT M+VD+ HANY++GSLFY LVI
Sbjct: 482 ACMSREFLLMKRNSFIYVFKSTQLVIIAAITMTVFLRTRMDVDIIHANYYLGSLFYALVI 541
Query: 376 LIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVI 435
L+VDG E+ M++ RL VFYKQ+++C YPAWAY IPATILK+PLS VESLVWTSLTYYVI
Sbjct: 542 LLVDGFPELSMTVSRLPVFYKQRDLCFYPAWAYTIPATILKIPLSFVESLVWTSLTYYVI 601
Query: 436 GFSPELWRWVSFEKAFVYFCIE-SSVDHCAETLKIDQFMCFQ--------LEVLQYGS-- 484
G+SPE R++ + ++F + SSV + + M L VL +G
Sbjct: 602 GYSPEFGRFL--RQFILFFSVHLSSVSMFRFFASVSRTMVASATAGSFAILLVLLFGGFI 659
Query: 485 ------------SYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGL 532
++++ + L+ N F W+K L TNTT+GRE L++RGL
Sbjct: 660 IPQPSMPDWLKWAFWISPMTYGEIGLAVNE----FLAPRWQKTLSTNTTLGRETLENRGL 715
Query: 533 NFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDE 592
NFD Y FWISL ALFG+ ++FN F LALSFL+ PG S A+ISH K S +Q S +
Sbjct: 716 NFDGYLFWISLAALFGVTIIFNIGFTLALSFLQAPGKSRAIISHEKLSQLQGRDQSTNGA 775
Query: 593 HVEDVDMNAHPNTSQ------MILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHK-LQL 645
+ E N P T++ M+LPFQP+T+ FQD+QY +DTP+EMR++ G A K L L
Sbjct: 776 YEEKESKNPPPKTTKEADIGRMVLPFQPLTVSFQDVQYYVDTPVEMRQK--GFAQKKLHL 833
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L DVTG+LRPGVLTALMGVSGAGKTTL+DVLAGRKTSG +GEI++ GYPK+QETF R+S
Sbjct: 834 LHDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGTIEGEIRIGGYPKVQETFARIS 893
Query: 706 GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765
GYCEQTDIHSP ITIEES+ FSAWLRL+PQI+SKTKA+ VN VL+TIELDGIK++LVG+P
Sbjct: 894 GYCEQTDIHSPQITIEESVIFSAWLRLSPQIDSKTKAEFVNEVLETIELDGIKDALVGMP 953
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCT 825
GV GLSTEQRKRLTI VELV+NPSIIFMDEPT+GLDARAAA+VMRAVKNV DTGRTIVCT
Sbjct: 954 GVGGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVDTGRTIVCT 1013
Query: 826 IHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWM 885
IHQPSIDIFE+FDELILLKTGG +IY GPLG HSSRVIEYFEGIPGVP+IRNNYNPATWM
Sbjct: 1014 IHQPSIDIFEAFDELILLKTGGHLIYCGPLGQHSSRVIEYFEGIPGVPKIRNNYNPATWM 1073
Query: 886 LEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQF 945
LEVTS S EAELG+DF+QIY+DS LYENNKELV+QLS + DLHF TRF++NGW QF
Sbjct: 1074 LEVTSTSAEAELGVDFAQIYKDSALYENNKELVKQLSIPPHGSEDLHFPTRFARNGWSQF 1133
Query: 946 KSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASF 1005
KSCLWKQHLSYWR+PSYN+ R ++ + AS LFG+LFW +GKE+NNQQ +FN+LGS+Y +
Sbjct: 1134 KSCLWKQHLSYWRSPSYNITRTMHMLVASLLFGILFWKQGKELNNQQGVFNVLGSMYVAV 1193
Query: 1006 IFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITY 1065
IFLG NCS+ LP+ +ERTV+YRE+ AGMYS AY+ AQVTIEIPYL IQ +YVIITY
Sbjct: 1194 IFLGINNCSTVLPHVTNERTVLYREKFAGMYSSWAYSLAQVTIEIPYLFIQTLIYVIITY 1253
Query: 1066 PMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGF 1125
PMIG+Y+S YKIFW FY +FC+++ ++YLG+LLVA++P+ VAS L SAFYT ++LFAGF
Sbjct: 1254 PMIGYYSSVYKIFWYFYAMFCTLLYYNYLGMLLVAMTPSFPVASILSSAFYTIFNLFAGF 1313
Query: 1126 VIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHH 1185
+IPQPQ+PKWW+WL+YL+PTSW++ G+LTSQYGDI K+I+VF E KT+A+FL++Y+GFHH
Sbjct: 1314 LIPQPQVPKWWLWLFYLTPTSWSITGMLTSQYGDIHKDILVFGETKTVATFLKDYYGFHH 1373
Query: 1186 DHLAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
D LAVVAV LI FP+ A LF + + RLNFQ+R
Sbjct: 1374 DRLAVVAVILIAFPLAFAFLFTYCIQRLNFQRR 1406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450466|ref|XP_002280231.1| PREDICTED: pleiotropic drug resistance protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1674 bits (4336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 816/1233 (66%), Positives = 990/1233 (80%), Gaps = 46/1233 (3%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
VTGEVSYNGY++EEFVPQK SAY+SQYDLHIPEMTVRET+DFS CQGVGSRA+ + E+S
Sbjct: 225 VTGEVSYNGYRMEEFVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRAETMSEVS 284
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE++A I+PDPDIDTYMKA SV LK+ LQTDY LKILGLDICADT+VGDA+RRGISGG
Sbjct: 285 RREKQAGIVPDPDIDTYMKAISVEGLKRTLQTDYILKILGLDICADTMVGDAMRRGISGG 344
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QK+RLTTG EM+VGP +A+FMD+I+NGLD ST+FQIV L+ L HI DATIL+SLLQP+P
Sbjct: 345 QKKRLTTG-EMIVGPTRALFMDEISNGLDSSTTFQIVAYLRQLVHIIDATILVSLLQPAP 403
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYW 255
ETF LFDDIILMAEG I+YHGP +LEFFE CGFRCP+RK V ISR+DQAQYW
Sbjct: 404 ETFDLFDDIILMAEGIIVYHGPCSHILEFFEDCGFRCPERKGVADFLQEVISRRDQAQYW 463
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
+H E HS+VSV F KFKESPFGKKLEE LS+ + KS S K+++SF+ +SLS+WELF+
Sbjct: 464 YHTEQAHSYVSVHTFSRKFKESPFGKKLEEKLSKPFDKSHSHKNALSFSKYSLSKWELFR 523
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVI 375
ACMSRE LL KRN F+Y+FK+ QL+IIA +TMT+FLRT M+VD+ HANY++GSLFY LVI
Sbjct: 524 ACMSREFLLMKRNSFIYVFKSTQLVIIAAITMTVFLRTRMDVDIIHANYYLGSLFYALVI 583
Query: 376 LIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVI 435
L+VDG E+ M++ RL VFYKQ+++C YPAWAY IPATILK+PLS VESLVWTSLTYYVI
Sbjct: 584 LLVDGFPELSMTVSRLPVFYKQRDLCFYPAWAYTIPATILKIPLSFVESLVWTSLTYYVI 643
Query: 436 GFSPELWRWVSFEKAFVYFCIE-SSVDHCAETLKIDQFMCFQ--------LEVLQYGS-- 484
G+SPE R++ + ++F + SSV + + M L VL +G
Sbjct: 644 GYSPEFGRFL--RQFILFFSVHLSSVSMFRFFASVSRTMVASATAGSFAILLVLLFGGFI 701
Query: 485 ------------SYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGL 532
++++ + L+ N F W+K L TNTT+GRE L++RGL
Sbjct: 702 IPQPSMPDWLKWAFWISPMTYGEIGLAVNE----FLAPRWQKTLSTNTTLGRETLENRGL 757
Query: 533 NFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDE 592
NFD Y FWISL ALFG+ ++FN F LALSFL+ PG S A+ISH K S +Q S +
Sbjct: 758 NFDGYLFWISLAALFGVTIIFNIGFTLALSFLQAPGKSRAIISHEKLSQLQGRDQSTNGA 817
Query: 593 HVEDVDMNAHPNTSQ------MILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHK-LQL 645
+ E N P T++ M+LPFQP+T+ FQD+QY +DTP+EMR++ G A K L L
Sbjct: 818 YEEKESKNPPPKTTKEADIGRMVLPFQPLTVSFQDVQYYVDTPVEMRQK--GFAQKKLHL 875
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L DVTG+LRPGVLTALMGVSGAGKTTL+DVLAGRKTSG +GEI++ GYPK+QETF R+S
Sbjct: 876 LHDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGTIEGEIRIGGYPKVQETFARIS 935
Query: 706 GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765
GYCEQTDIHSP ITIEES+ FSAWLRL+PQI+SKTKA+ VN VL+TIELDGIK++LVG+P
Sbjct: 936 GYCEQTDIHSPQITIEESVIFSAWLRLSPQIDSKTKAEFVNEVLETIELDGIKDALVGMP 995
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCT 825
GV GLSTEQRKRLTI VELV+NPSIIFMDEPT+GLDARAAA+VMRAVKNV DTGRTIVCT
Sbjct: 996 GVGGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVDTGRTIVCT 1055
Query: 826 IHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWM 885
IHQPSIDIFE+FDELILLKTGG +IY GPLG HSSRVIEYFEGIPGVP+IRNNYNPATWM
Sbjct: 1056 IHQPSIDIFEAFDELILLKTGGHLIYCGPLGQHSSRVIEYFEGIPGVPKIRNNYNPATWM 1115
Query: 886 LEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQF 945
LEVTS S EAELG+DF+QIY+DS LYENNKELV+QLS + DLHF TRF++NGW QF
Sbjct: 1116 LEVTSTSAEAELGVDFAQIYKDSALYENNKELVKQLSIPPHGSEDLHFPTRFARNGWSQF 1175
Query: 946 KSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASF 1005
KSCLWKQHLSYWR+PSYN+ R ++ + AS LFG+LFW +GKE+NNQQ +FN+LGS+Y +
Sbjct: 1176 KSCLWKQHLSYWRSPSYNITRTMHMLVASLLFGILFWKQGKELNNQQGVFNVLGSMYVAV 1235
Query: 1006 IFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITY 1065
IFLG NCS+ LP+ +ERTV+YRE+ AGMYS AY+ AQVTIEIPYL IQ +YVIITY
Sbjct: 1236 IFLGINNCSTVLPHVTNERTVLYREKFAGMYSSWAYSLAQVTIEIPYLFIQTLIYVIITY 1295
Query: 1066 PMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGF 1125
PMIG+Y+S YKIFW FY +FC+++ ++YLG+LLVA++P+ VAS L SAFYT ++LFAGF
Sbjct: 1296 PMIGYYSSVYKIFWYFYAMFCTLLYYNYLGMLLVAMTPSFPVASILSSAFYTIFNLFAGF 1355
Query: 1126 VIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHH 1185
+IPQPQ+PKWW+WL+YL+PTSW++ G+LTSQYGDI K+I+VF E KT+A+FL++Y+GFHH
Sbjct: 1356 LIPQPQVPKWWLWLFYLTPTSWSITGMLTSQYGDIHKDILVFGETKTVATFLKDYYGFHH 1415
Query: 1186 DHLAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
D LAVVAV LI FP+ A LF + + RLNFQ+R
Sbjct: 1416 DRLAVVAVILIAFPLAFAFLFTYCIQRLNFQRR 1448
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542838|ref|XP_002512482.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223548443|gb|EEF49934.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1630 bits (4220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 779/1233 (63%), Positives = 973/1233 (78%), Gaps = 46/1233 (3%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
V GE+SYNGY+LEEFVPQK SAY+SQYDLHIPEMTVRE +DFS CQG+GSRA+I+ E+S
Sbjct: 218 VRGEISYNGYRLEEFVPQKTSAYISQYDLHIPEMTVREAIDFSAQCQGIGSRAEIVTEVS 277
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE++A I+PD D+D YMKA S+ LK N+QTDY LKILGLDICADT+VGDA+RRGISGG
Sbjct: 278 RREKQAGIVPDTDVDAYMKAVSIEGLKSNIQTDYILKILGLDICADTMVGDAMRRGISGG 337
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QK+RLTTG EM+VGP K +FMD+++NGLD ST+FQIV+CLQHL HITDAT LISLLQP+P
Sbjct: 338 QKKRLTTG-EMIVGPAKTLFMDEVSNGLDSSTTFQIVSCLQHLVHITDATALISLLQPAP 396
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYW 255
ETF LFDD+ILMAEGKI+YHGPR S+ FFE CGFRCP RK V ISRKDQAQYW
Sbjct: 397 ETFDLFDDVILMAEGKIVYHGPRPSICSFFEECGFRCPQRKGVADFLQEVISRKDQAQYW 456
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
+ P+++VSVD F +KF+ES G+KL E+LS+ + KSES KS++SF +SL + E+FK
Sbjct: 457 CRTDQPYNYVSVDQFVKKFRESQLGQKLTEELSKPFDKSESHKSALSFKQYSLPKLEMFK 516
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVI 375
AC RE LL KRN F+Y+FKT+QL+IIA +TMT+ LRT + VDV HAN +MG++FY++++
Sbjct: 517 ACSRREFLLMKRNSFIYVFKTVQLVIIAAITMTVLLRTRLGVDVLHANDYMGAIFYSILL 576
Query: 376 LIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVI 435
L+VDG E+ M++ RLAVF+KQKE+C YPAWAYV+PAT+LK+PLSL+E++VWTSLTYYVI
Sbjct: 577 LLVDGFPELQMTVSRLAVFHKQKELCFYPAWAYVVPATLLKIPLSLLEAVVWTSLTYYVI 636
Query: 436 GFSPELWRWVSFEKAFVYFCIE-SSVDH-------CAETLKIDQF-MCFQLEVLQYGSSY 486
GFSPE R+ F + + F I +S+ C T+ F F L L +G
Sbjct: 637 GFSPEAGRF--FRQLLLLFVIHLTSISMFRFIASICQTTVASTTFGSLFILTSLLFGG-- 692
Query: 487 YLVASLSHNVRLSSN---NMIVY---------FKLIHWKKILFTNTTIGREILKSRGLNF 534
+++ S L N + Y F W+KI+ NTTIG++ L+SRGL++
Sbjct: 693 FIIPKPSMPPWLDWGFWINPLTYGEIGMCVNEFLAPRWQKIMSANTTIGQQTLESRGLHY 752
Query: 535 DEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHV 594
D YF+WIS+GAL G ++FN F LAL++LKPPG + A+IS+ K++ +Q D+ HV
Sbjct: 753 DGYFYWISVGALLGFTVLFNIGFTLALTYLKPPGRTHAIISYEKYNQLQEKVD--DNNHV 810
Query: 595 EDVDM--------NAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHK-LQL 645
+ + + T +M+LPF+P+T+ FQDLQY +D PLEMR+R G A K LQL
Sbjct: 811 DKNNRLADAYFMPDTRTETGRMVLPFEPLTITFQDLQYYVDAPLEMRKR--GFAQKNLQL 868
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L D+TGT RPG+LTALMGVSGAGKTTL+DVL+GRKT G KG+I++ GYPK+Q F R+S
Sbjct: 869 LTDITGTFRPGILTALMGVSGAGKTTLMDVLSGRKTGGTIKGDIRIGGYPKVQHLFARIS 928
Query: 706 GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765
GY EQTDIHSP IT+EESL +SAWLRL +I+ KTK++ VN VL+TIELDGIK+SLVG+P
Sbjct: 929 GYVEQTDIHSPQITVEESLIYSAWLRLPSEIDPKTKSEFVNEVLETIELDGIKDSLVGLP 988
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCT 825
G+SGLSTEQRKRLTI VELV+NPSIIFMDEPTTGLDARAAAIVMRAVKNV +TGRT+VCT
Sbjct: 989 GISGLSTEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNVVETGRTVVCT 1048
Query: 826 IHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWM 885
IHQPSIDIFE+FDELILLK GGRIIYSGPLG HSSRVIEYFE +PGV +I +NYNPATWM
Sbjct: 1049 IHQPSIDIFEAFDELILLKIGGRIIYSGPLGRHSSRVIEYFENVPGVKKIEDNYNPATWM 1108
Query: 886 LEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQF 945
LEVTS S EAELG+DF QIYE+S LY+ NKELV+QLS+ +++LHF+TRF QNGW QF
Sbjct: 1109 LEVTSKSAEAELGVDFGQIYEESTLYKENKELVKQLSSPMPGSKELHFSTRFPQNGWEQF 1168
Query: 946 KSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASF 1005
K+C WK H+SYWR+PSYNL R++ +AASFLFG LFW +GKEINNQQDLF + GS+Y +
Sbjct: 1169 KACFWKHHMSYWRSPSYNLTRLVYMVAASFLFGALFWQRGKEINNQQDLFIMFGSMYTAV 1228
Query: 1006 IFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITY 1065
IF G NCSS LPY A+ERTV+YRE+ AGMYSP AY+ AQV +E+PY I A +YV+ITY
Sbjct: 1229 IFFGINNCSSVLPYIATERTVLYRERFAGMYSPWAYSLAQVLVELPYSFIIAIIYVVITY 1288
Query: 1066 PMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGF 1125
PM+G+ SAYKIFW FY +FC+++SF+Y+G+LLV+L+PN+ VAS L S+ YT LF GF
Sbjct: 1289 PMVGYSMSAYKIFWAFYSLFCTLLSFNYMGMLLVSLTPNIQVASILASSTYTMLILFTGF 1348
Query: 1126 VIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHH 1185
++P+P+IPKWWIWLYY+ PTSW L G+LTSQ+GDIDKEI VF E KT+++FLE+YFGFHH
Sbjct: 1349 IVPRPRIPKWWIWLYYMCPTSWVLNGMLTSQFGDIDKEISVFGETKTVSAFLEDYFGFHH 1408
Query: 1186 DHLAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
+ L VV L++FP V ASLFA+F+G+LNFQ+R
Sbjct: 1409 NFLGVVGAVLVIFPFVFASLFAYFIGKLNFQRR 1441
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75321780|sp|Q5W274.1|PDR3_TOBAC RecName: Full=Pleiotropic drug resistance protein 3; AltName: Full=NtPDR3 gi|55056942|emb|CAH39853.1| PDR-like ABC transporter [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 1628 bits (4217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 786/1231 (63%), Positives = 975/1231 (79%), Gaps = 46/1231 (3%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
V+GE+SYNGYKLEEFVPQK SAYVSQ DLHIPEMTVRETLD+S+ QGVGSRA+I+ +LS
Sbjct: 228 VSGEISYNGYKLEEFVPQKTSAYVSQNDLHIPEMTVRETLDYSSRFQGVGSRAEIMTDLS 287
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE+EA ++PDPDIDTYMKA S+ KKNLQTDY LKILGLDICADTLVGDA+RRGISGG
Sbjct: 288 RREKEAGVVPDPDIDTYMKAISIEGQKKNLQTDYILKILGLDICADTLVGDAMRRGISGG 347
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QK+RLTTG E++VGPIKA+FMD+I+NGLD ST++QIV CLQ LAHITDATIL+SLLQP+P
Sbjct: 348 QKKRLTTG-ELIVGPIKALFMDEISNGLDSSTTYQIVACLQQLAHITDATILVSLLQPAP 406
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYW 255
ETF LFDDIILMAEGKILYHGPR S LEFFESCGF+CP+RK V S+KDQAQYW
Sbjct: 407 ETFDLFDDIILMAEGKILYHGPRNSALEFFESCGFKCPERKGVADFLQEVTSKKDQAQYW 466
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
+ + FVSVDM KFKESP+ KKL E+LS Y S S ++S++F +SL +WELF+
Sbjct: 467 HGTKETYKFVSVDMLSRKFKESPYRKKLNEELSVPYDNSRSHRNSITFRDYSLPKWELFR 526
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVI 375
ACMSRE LL KRN F+Y+FKT+QL IIA++TMT+FLRT M+ D+ HANY++G+LFY L+I
Sbjct: 527 ACMSREFLLMKRNSFIYIFKTVQLAIIASITMTVFLRTRMDTDLVHANYYLGALFYALII 586
Query: 376 LIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVI 435
L+VDG E+ M++ RLAVFYKQ E+C YPAWAY IPATILK+PLSL+ES++W S+TYYVI
Sbjct: 587 LLVDGFPELSMTITRLAVFYKQSELCFYPAWAYTIPATILKIPLSLLESVIWASMTYYVI 646
Query: 436 GFSPELWRW--------------VSFEKAFVYFCIESSVDHCAETLKIDQFMCFQLEV-- 479
GFSPE R+ +S + C A L I +CF +
Sbjct: 647 GFSPEAGRFFRQLLLLFAVHMTSISMFRFLASVCRTIVASTAAGGLSILFVLCFSGFIIP 706
Query: 480 -------LQYGSSYYLVASLSHN-VRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRG 531
L++G + ++ L++ + L+ N F W+K L TNT+IG E+L+SRG
Sbjct: 707 RPSMPIWLKWG---FWISPLTYGEIGLAVNE----FLAPRWQKTLPTNTSIGNEVLESRG 759
Query: 532 LNFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDD 591
LNFD YF+WIS+ ALFG ++FN F LAL+FLK PGS A+IS K+S I+ S S D
Sbjct: 760 LNFDGYFYWISVCALFGFTILFNIGFTLALTFLKAPGSR-AIISTDKYSQIEGSSDSIDK 818
Query: 592 EHVED---VDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHK-LQLLD 647
+ M++H +M+LPF+P+++VFQD+QY +DTP M E G K LQLL
Sbjct: 819 ADAAENSKATMDSHERAGRMVLPFEPLSLVFQDVQYYVDTPAAMT--ELGFTQKRLQLLS 876
Query: 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGY 707
D+TG LRPG+LTALMGVSGAGKTTLLDVLAGRKT+G +GEIKV GYPK+QETF RVSGY
Sbjct: 877 DITGALRPGILTALMGVSGAGKTTLLDVLAGRKTTGYVEGEIKVGGYPKVQETFARVSGY 936
Query: 708 CEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767
CEQTDIHSP IT+EES+ FSAWLRL PQI+SKTK + V V++TIELDGIK LVG+PGV
Sbjct: 937 CEQTDIHSPQITVEESVIFSAWLRLHPQIDSKTKYEFVKEVIETIELDGIKGMLVGMPGV 996
Query: 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIH 827
SGLSTEQRKRLTI VELVANPSIIFMDEPTTGLDAR+AAIVMRAVKNVADTGRTIVCTIH
Sbjct: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARSAAIVMRAVKNVADTGRTIVCTIH 1056
Query: 828 QPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLE 887
QPSIDIFE+FDELILLKTGGR+IY G LG +S ++IEYFEGI VP+I+NN+NPATWMLE
Sbjct: 1057 QPSIDIFEAFDELILLKTGGRMIYWGHLGRNSCKMIEYFEGISCVPKIKNNHNPATWMLE 1116
Query: 888 VTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKS 947
VTS S+EA++ +DF+++Y++S L++NN+ELV++LS ++DLHF TRFSQNGWGQFK+
Sbjct: 1117 VTSTSSEADISIDFAEVYKNSALHKNNEELVKKLSFPPAGSKDLHFPTRFSQNGWGQFKT 1176
Query: 948 CLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIF 1007
C WKQ+ SYWR+PSYNLMR L+ + AS + GLLFW+KGK+++NQQ +F++ G+++ + IF
Sbjct: 1177 CFWKQYWSYWRSPSYNLMRSLHMLFASLVSGLLFWDKGKKLDNQQSVFSVFGAMFTAVIF 1236
Query: 1008 LGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPM 1067
G N SS LPY +ER+V+YRE+ AGMY+ AYA AQV IEIPYLL QA + +ITYPM
Sbjct: 1237 CGINNSSSVLPYVTTERSVLYRERFAGMYASWAYALAQVAIEIPYLLAQALAFTVITYPM 1296
Query: 1068 IGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVI 1127
IG+Y SAYK+FW FY +FC+++ F+YLG++LV+++P+ VA+ L S+FYT ++LFAGF++
Sbjct: 1297 IGYYWSAYKVFWYFYSMFCTLLYFTYLGMMLVSMTPSFPVAAILQSSFYTMFNLFAGFLM 1356
Query: 1128 PQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDH 1187
P+ QIPKWWIW YYL+PTSWTL G+LTSQYGDI+KEI VF E KT+A+FL +YFGFHH+
Sbjct: 1357 PKAQIPKWWIWFYYLTPTSWTLNGMLTSQYGDIEKEITVFQEKKTVAAFLGDYFGFHHNQ 1416
Query: 1188 LAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
L +VA LI +P+V ASLFAFF+G+LNFQ+R
Sbjct: 1417 LPIVAFVLIAYPLVFASLFAFFIGKLNFQRR 1447
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147780242|emb|CAN65735.1| hypothetical protein VITISV_037751 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1627 bits (4213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 800/1233 (64%), Positives = 970/1233 (78%), Gaps = 77/1233 (6%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
VTGEVSYNGYK+EEFVPQK SAY+SQYDLHIPEMTVRET+DFS CQGVGSRA+ +LE+S
Sbjct: 225 VTGEVSYNGYKMEEFVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRAETMLEVS 284
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE++A I+PDPDIDTYMKA SV LK+ LQTDY LKILGLDICADT+VGDA+RRGISGG
Sbjct: 285 RREKQAGIVPDPDIDTYMKAISVEGLKRTLQTDYILKILGLDICADTMVGDAMRRGISGG 344
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
P +A+FMD+I+NGLD ST+FQIV L+ L HI DATIL+SLLQP+P
Sbjct: 345 --------------PTRALFMDEISNGLDSSTTFQIVAYLRQLVHIIDATILVSLLQPAP 390
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYW 255
ETF LFDDIILMAEG I+YHGP +LEFFE CGFRCP+RK V ISR+DQAQYW
Sbjct: 391 ETFDLFDDIILMAEGIIVYHGPCSHILEFFEDCGFRCPERKGVADFLQEVISRRDQAQYW 450
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
+H E HS+VSV F KFKESPFGKKLEE LS+ + KS S K+++SF+ +SLS+WELF+
Sbjct: 451 YHTEQAHSYVSVHTFSRKFKESPFGKKLEEKLSKPFDKSHSHKNALSFSKYSLSKWELFR 510
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVI 375
ACMSRE LL KRN F+Y+FK+ QL+IIA +TMT+FLRT M+VD+ HANY++GSLFY LVI
Sbjct: 511 ACMSREFLLMKRNSFIYVFKSTQLVIIAAITMTVFLRTRMDVDIIHANYYLGSLFYALVI 570
Query: 376 LIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVI 435
L+VDG E+ M++ RL VFYKQ+++C YPAWAY IPATILK+PLS VESLVWTSLTYYVI
Sbjct: 571 LLVDGFPELSMTVSRLPVFYKQRDLCFYPAWAYTIPATILKIPLSFVESLVWTSLTYYVI 630
Query: 436 GFSPELWRWVSFEKAFVYFCIE-SSVDHCAETLKIDQFMCFQ--------LEVLQYGS-- 484
G+SPE R++ + ++F + SSV + + M L VL +G
Sbjct: 631 GYSPEFGRFL--RQFILFFAVHLSSVSMFRFFASVSRTMVASATAGSFAILLVLLFGGFI 688
Query: 485 ------------SYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGL 532
++++ + L+ N F W+K L TNTT+GRE L++RGL
Sbjct: 689 IPQPSMPDWLKWAFWISPMTYGEIGLAVNE----FLAPRWQKTLSTNTTLGRETLENRGL 744
Query: 533 NFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDE 592
NFD YFFWISL ALFG+ ++FN F LALSFL Q S +
Sbjct: 745 NFDGYFFWISLAALFGVTIIFNIGFTLALSFL------------------QGRDQSTNGA 786
Query: 593 HVEDVDMNAHPNTSQ------MILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHK-LQL 645
+ E+ N P T++ M+LPFQP+T+ FQD+QY +DTP+EMR++ G A K LQL
Sbjct: 787 YEEEESKNPPPKTTKEADIGRMVLPFQPLTVSFQDVQYYVDTPVEMRQK--GFAQKKLQL 844
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L D+TG+LRPGVLTALMGVSGAGKTTL+DVLAGRKTSG +GEI++ GYPK+QETF R+S
Sbjct: 845 LHDITGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGTIEGEIRIGGYPKVQETFARIS 904
Query: 706 GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765
GYCEQTDIHSP ITIEES+ FSAWLRL+PQI+SKTKA+ VN VL+TIELDGIK++LVG+P
Sbjct: 905 GYCEQTDIHSPQITIEESVIFSAWLRLSPQIDSKTKAEFVNEVLETIELDGIKDALVGMP 964
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCT 825
GV GLSTEQRKRLTI VELV+NPSIIFMDEPT+GLDARAAA+VMRAVKNV DTGRTIVCT
Sbjct: 965 GVGGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVDTGRTIVCT 1024
Query: 826 IHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWM 885
IHQPSIDIFE+FDELILLKTGG +IY GPLG HSSRVIEYFEGIPGVP+IRNNYNPATWM
Sbjct: 1025 IHQPSIDIFEAFDELILLKTGGHLIYCGPLGQHSSRVIEYFEGIPGVPKIRNNYNPATWM 1084
Query: 886 LEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQF 945
LEVTSAS EAELG+DF+QIY+DS LYENNKELV+QLS + DLHF TRF++NGW QF
Sbjct: 1085 LEVTSASAEAELGIDFAQIYKDSALYENNKELVKQLSIPPHGSEDLHFPTRFARNGWSQF 1144
Query: 946 KSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASF 1005
KSCLWKQHLSYWR+PSYN+ R ++ + AS LFG+LFW +GKE+NNQQ +FN+LGS+Y +
Sbjct: 1145 KSCLWKQHLSYWRSPSYNITRTMHMLVASLLFGILFWKQGKELNNQQGVFNVLGSMYVAV 1204
Query: 1006 IFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITY 1065
IFLG NCS+ LP+ +ERTV+YRE+ AGMYS AY+ AQVTIEIPYL IQ +YVIITY
Sbjct: 1205 IFLGINNCSTVLPHVTNERTVLYREKFAGMYSSWAYSLAQVTIEIPYLFIQTLIYVIITY 1264
Query: 1066 PMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGF 1125
PMIG+Y+S YKIFW FY +FC+++ ++YLG+LLVA++P+ VAS L SAFYT ++LFAGF
Sbjct: 1265 PMIGYYSSVYKIFWYFYAMFCTLLYYNYLGMLLVAMTPSFPVASILSSAFYTIFNLFAGF 1324
Query: 1126 VIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHH 1185
+IPQPQ+PKWW+WL+YL+PTSW++ G+LTSQYGDI K+I+VF E KT+A+FL++Y+GFHH
Sbjct: 1325 LIPQPQVPKWWLWLFYLTPTSWSITGMLTSQYGDIHKDILVFGETKTVAAFLKDYYGFHH 1384
Query: 1186 DHLAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
D LAVVAV LI FP+ A LF + + RLNFQ+R
Sbjct: 1385 DRLAVVAVILIAFPLAFAFLFTYCIQRLNFQRR 1417
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099040|ref|XP_002311359.1| predicted protein [Populus trichocarpa] gi|222851179|gb|EEE88726.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1570 bits (4066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 755/1236 (61%), Positives = 964/1236 (77%), Gaps = 53/1236 (4%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
V+GE+SYNG+ LEEFVPQK S Y+SQ+DLHIPEMTVRET+DFS CQG+GSRADI++E+
Sbjct: 254 VSGEISYNGHSLEEFVPQKSSVYISQHDLHIPEMTVRETIDFSARCQGIGSRADIMMEVI 313
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE++A I+PDPD+D YMKA SV LK LQTDY LKILGLDIC+D +VGDA+RRGISGG
Sbjct: 314 RREKQAGILPDPDVDAYMKAISVEGLKSTLQTDYILKILGLDICSDIMVGDAMRRGISGG 373
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QK+RLTTG EM+VGP+KA+FMD+I+NGLD ST+FQI++C+QHLAHITDAT+LISLLQP+P
Sbjct: 374 QKKRLTTG-EMIVGPVKALFMDEISNGLDSSTTFQIMSCMQHLAHITDATVLISLLQPAP 432
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKA-------VISRKDQAQYW 255
ETF LFDDIILMAEGKI+YHGPR ++ +FFE CGFRCP+RK VISRKDQ QYW
Sbjct: 433 ETFDLFDDIILMAEGKIVYHGPRSTISKFFEDCGFRCPERKGIADFLQEVISRKDQGQYW 492
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
E HS++ VD F +KFKES FG+KL+++LS+ + KS+S K++++F+ +SL++WELFK
Sbjct: 493 HRTEQLHSYIPVDQFVKKFKESQFGEKLDKELSRPFDKSKSHKNALTFSKYSLTKWELFK 552
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVI 375
AC RE L+ KRN F+Y+ K+IQL+I+A++ MT+ LRT M VD HANY+MG+LFY LVI
Sbjct: 553 ACSMREFLMMKRNSFIYVLKSIQLVIVASICMTVLLRTRMGVDEIHANYYMGALFYALVI 612
Query: 376 LIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVI 435
L+VDG+ E+ M+ RLAVFYKQ+E+ YPAWAY IPA ILKVPLSL+E+ VWT+LTYYVI
Sbjct: 613 LVVDGVPELQMTTSRLAVFYKQRELYFYPAWAYAIPAAILKVPLSLMEAFVWTALTYYVI 672
Query: 436 GFSPELWRWVS---------------FEKAFVYFCIESSV-DHCAETLKIDQFMCFQLEV 479
G+SPEL R++ F FV +++V A ++ I + F V
Sbjct: 673 GYSPELERFLRQFLILFLLHLASLSMFR--FVASIFQTAVASMTAGSIAIMGCLLFGGFV 730
Query: 480 ---------LQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSR 530
LQ+G +++ + L++N F W+KI+ NTTIG++ L+SR
Sbjct: 731 IPKPSMPAWLQWG--FWISPITYGEIGLTTNE----FLAPRWEKIVSGNTTIGQQTLESR 784
Query: 531 GLNFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCD 590
GLNF YF+WIS+GAL GLAL+FN F LAL+FLKPPG+S A+IS+ ++ +Q G D
Sbjct: 785 GLNFHGYFYWISVGALMGLALLFNIGFTLALTFLKPPGNSRAIISYERYYQLQ---GRKD 841
Query: 591 DEHVEDVDMNAH--------PNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHK 642
D D D H P +M+LPF+P+ M F+D+QY +DTPLEMR+R L K
Sbjct: 842 DVDGFDEDKKLHSANESSPGPKKGRMVLPFEPLVMTFKDVQYYVDTPLEMRKRGV-LQKK 900
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFV 702
LQLL D+TG RPG+LTALMGVSGAGKTTL+DVL+GRKT G +GEI++ GYPK+Q+TF
Sbjct: 901 LQLLSDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGTTEGEIRIGGYPKVQDTFA 960
Query: 703 RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLV 762
R+SGYCEQ DIHSP ITIEES+ FSAWLRL I+ KTK D VN VL+TIELD IK+SLV
Sbjct: 961 RISGYCEQADIHSPQITIEESVVFSAWLRLPSVIDPKTKFDFVNEVLETIELDWIKDSLV 1020
Query: 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTI 822
GIPG+SGLSTEQRKRLTI VELV+NPS+IFMDEPT+GLDARAAAIVMRA KN+ +TGRT+
Sbjct: 1021 GIPGISGLSTEQRKRLTIAVELVSNPSVIFMDEPTSGLDARAAAIVMRAAKNIVETGRTV 1080
Query: 823 VCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPA 882
+CTIHQPSIDIFE+FDELIL+KTGGR+IYSG LG SS +IEYFE IPGVP+I++NYNPA
Sbjct: 1081 ICTIHQPSIDIFEAFDELILMKTGGRLIYSGQLGQRSSALIEYFEKIPGVPKIKDNYNPA 1140
Query: 883 TWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGW 942
TWMLEVTS S EAELG+DF QIYE S LY+ N++LV QLS+ ++DLHF T+FSQNGW
Sbjct: 1141 TWMLEVTSQSAEAELGVDFGQIYEGSTLYKENRKLVEQLSSKTPGSKDLHFPTQFSQNGW 1200
Query: 943 GQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLY 1002
Q K+CLWKQ+LSYWR+P YNL+RI + + LFG+LFW +GK INNQQDLF++LG++Y
Sbjct: 1201 EQLKACLWKQNLSYWRSPPYNLLRISFISSGALLFGVLFWQQGKNINNQQDLFSMLGAMY 1260
Query: 1003 ASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVI 1062
+ +F G NCS+ LPY +++RTV+YRE+ AG YS AY+ AQ+ +E+PYL Q+ +YVI
Sbjct: 1261 TAIMFFGINNCSTVLPYVSADRTVLYRERFAGTYSAWAYSLAQLLVEVPYLFAQSVIYVI 1320
Query: 1063 ITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLF 1122
+TYPMIG+ SAYKIFW+ YG+FC+++ F+YLG+LL++++PN VA L S +TT + F
Sbjct: 1321 VTYPMIGYSLSAYKIFWSLYGMFCTLLCFNYLGMLLISVTPNAQVAIILCSIAFTTMNFF 1380
Query: 1123 AGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFG 1182
AGF++P+ +IP WWIWLYY+ PTSW LEG+ TSQYGD+DKEI VF E KT ++F+E+YFG
Sbjct: 1381 AGFIVPKKRIPMWWIWLYYICPTSWALEGMFTSQYGDLDKEISVFGETKTASAFIEDYFG 1440
Query: 1183 FHHDHLAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
+ D L VV + LI+ P+V+ASLF +F+G+LNFQ+R
Sbjct: 1441 YRQDFLGVVGLVLIIIPIVIASLFTYFIGKLNFQRR 1476
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112072|ref|XP_002316074.1| predicted protein [Populus trichocarpa] gi|222865114|gb|EEF02245.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1570 bits (4066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 756/1237 (61%), Positives = 953/1237 (77%), Gaps = 51/1237 (4%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
V GE+SYNG++LEEFVPQK +AYVSQYDLHIPEMTVRET+DFS CQG GSRA+I++E+S
Sbjct: 229 VAGEISYNGHRLEEFVPQKTAAYVSQYDLHIPEMTVRETIDFSARCQGAGSRAEIMMEVS 288
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE++A I+PD D+D YMKA SV LK NLQTDY LKILGLDICADT+VGD +RRGISGG
Sbjct: 289 RREKQAGILPDSDVDAYMKAISVEGLKSNLQTDYILKILGLDICADTMVGDTMRRGISGG 348
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QK+RL+TG EM+VGP+KA+FMD+I+NGLD ST+FQIV+C+QHLAHITDAT+LISLLQP+P
Sbjct: 349 QKKRLSTG-EMVVGPMKALFMDEISNGLDSSTTFQIVSCMQHLAHITDATVLISLLQPAP 407
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYW 255
E F LFDDI+LMAEG ++YHGPR SV FFE GFRCP+RK V ISRKDQ QYW
Sbjct: 408 EIFDLFDDIMLMAEGMVVYHGPRSSVCRFFEDSGFRCPERKEVADFLQEVISRKDQRQYW 467
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
+ E PHS+VSV+ F +KFKES G+ L+E++ + + KS S K+++ F +SLS+WELFK
Sbjct: 468 YCTEQPHSYVSVEQFVKKFKESQLGQMLDEEIMKPFDKSNSHKTALCFRKYSLSKWELFK 527
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVI 375
C +RE +L KRN F+Y+FK QL+I A++TMT+FLRT M VD HA+Y+M +LF+ L I
Sbjct: 528 VCSTREFVLMKRNSFIYVFKCTQLVITASITMTVFLRTRMAVDAIHASYYMSALFFALTI 587
Query: 376 LIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVI 435
L DGI E+ M++ RLAVFYKQ+E+C YPAWAYV+P ILKVPLSLVE+ VWT+LTYYV+
Sbjct: 588 LFSDGIPELHMTVSRLAVFYKQRELCFYPAWAYVVPTAILKVPLSLVEAFVWTTLTYYVV 647
Query: 436 GFSPE--------------------LWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCF 475
G+SPE ++R+V+ + + + TL F+
Sbjct: 648 GYSPEFGRFFRQFLLLFLVHSTSISMFRFVASLFQTMVASVTAGGLALLITLLFGGFLIP 707
Query: 476 QLEVLQYGSSYYLVASLSHN-VRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNF 534
+ + + + ++ L++ + LS N F W K + NTTI ++ L+SRGLNF
Sbjct: 708 KPSMPVWLGWGFWISPLAYGEIGLSLNE----FLTPRWAKTVSGNTTIQQQTLESRGLNF 763
Query: 535 DEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHV 594
YF+WIS+GAL GL ++FN FALAL+FLK PG+S A+IS+ ++ + +G DD
Sbjct: 764 HGYFYWISVGALIGLTVLFNVGFALALTFLKSPGNSRAIISYERY---YQQQGKLDDGAS 820
Query: 595 EDVDMN------AHPNTS------QMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHK 642
D++ + A P +S +M LPF+P+TM F+D++Y +DTPLEMR+R G K
Sbjct: 821 FDINNDKKTLTCACPKSSPGDKKGRMALPFEPLTMTFKDVRYYVDTPLEMRKR--GFPQK 878
Query: 643 -LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETF 701
LQLL D+TG RPG+LTALMGVSGAGKTTL+DVL+GRKT G +GEI++ GYPK+Q +F
Sbjct: 879 KLQLLSDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGTIEGEIRIGGYPKVQHSF 938
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
RVSGYCEQTDIHSP IT+EES+ +SAWLRL P+I++KTK + VN VL+TIELD IK+SL
Sbjct: 939 ARVSGYCEQTDIHSPQITVEESVIYSAWLRLPPEIDTKTKYEFVNQVLETIELDEIKDSL 998
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821
VGIPG+SGLS EQRKRLT+ VELVANPSIIFMDEPT+GLDARAAAIVMR VKN+ +TGRT
Sbjct: 999 VGIPGISGLSIEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAIVMRVVKNIVETGRT 1058
Query: 822 IVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNP 881
IVCTIHQPSIDIFE+FDELIL+K GGRIIYSGPLG SS+VIEYFE IPGVP+I+N YNP
Sbjct: 1059 IVCTIHQPSIDIFEAFDELILMKIGGRIIYSGPLGQRSSKVIEYFENIPGVPKIKNRYNP 1118
Query: 882 ATWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNG 941
ATWMLEV+S + EA+LG+DF + YE S LYE NKELV+QLS+ ++DLHF T F QNG
Sbjct: 1119 ATWMLEVSSKTAEADLGVDFGEAYEGSTLYEENKELVKQLSSPTPGSKDLHFPTCFPQNG 1178
Query: 942 WGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSL 1001
W Q K+CLWKQHLSYWR+PSYNL+RI+ + LFGLLFW +G +INNQQDLF+I GS+
Sbjct: 1179 WEQLKACLWKQHLSYWRSPSYNLLRIVFMSFGALLFGLLFWQQGNKINNQQDLFSIAGSM 1238
Query: 1002 YASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYV 1061
Y+ IF G NCS L + A ERTV YRE+ AGMYS AY+FAQV +E+PYLLI+ LYV
Sbjct: 1239 YSIIIFFGINNCSPVLAFVARERTVFYRERFAGMYSSWAYSFAQVLVEVPYLLIEGILYV 1298
Query: 1062 IITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSL 1121
IITYPMIG+ SAYKIFW+FY +FC ++ F+YLG+LLV+L+PN+ VAS L + YTT +
Sbjct: 1299 IITYPMIGYSLSAYKIFWSFYSMFCMLLFFNYLGMLLVSLTPNIQVASNLAAFAYTTLNF 1358
Query: 1122 FAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYF 1181
F+GF++P+P IPKWW+WLYY+ P+SWTL +LTSQYGD++KEI VF E T+A F+ +YF
Sbjct: 1359 FSGFIVPKPYIPKWWVWLYYICPSSWTLNAMLTSQYGDVNKEISVFGETMTVADFVGDYF 1418
Query: 1182 GFHHDHLAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
GFHH+ L VV V LI+FP++ ASLFA+F GRLNFQ+R
Sbjct: 1419 GFHHNFLGVVGVVLIIFPIITASLFAYFFGRLNFQRR 1455
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823555|ref|XP_002879660.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325499|gb|EFH55919.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1560 bits (4040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/1229 (60%), Positives = 949/1229 (77%), Gaps = 43/1229 (3%)
Query: 24 TGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSG 83
+GE++YNG+ L E VPQK SAY+SQ+DLHI EMTVRET+DFS CQGVGSR DI++E+S
Sbjct: 205 SGEITYNGHGLNEVVPQKTSAYISQHDLHIAEMTVRETIDFSARCQGVGSRTDIMMEVSK 264
Query: 84 REEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQ 143
RE++ IIPDP++D YMKA SV LK++LQTDY LKILGLDICA+TLVG+A++RGISGGQ
Sbjct: 265 REKDGGIIPDPEVDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQ 324
Query: 144 KRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPE 203
K+RLTT EM+VGP KA+FMD+ITNGLD ST+FQIV LQ L+HIT+AT+ +SLLQP+PE
Sbjct: 325 KKRLTTA-EMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQLSHITNATVFVSLLQPAPE 383
Query: 204 TFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYWF 256
++ LFDDI+LMAEGKI+YHGPRE VLEFFE CGF+CP RK V IS+KDQ QYW
Sbjct: 384 SYDLFDDIVLMAEGKIVYHGPREEVLEFFEECGFQCPKRKGVADFLQEVISKKDQGQYWL 443
Query: 257 HNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSES-KKSSVSFAVFSLSRWELFK 315
H ++PHSFVSVD +KFK+ GKK+EE LS+ Y KS++ K +++SF V+SL +WELF+
Sbjct: 444 HQDIPHSFVSVDTLSKKFKDLEIGKKIEESLSKPYDKSKTLKDNALSFNVYSLPKWELFR 503
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVI 375
C+SRE LL KRNYF+YLFKT QL++ A +TMT+F+RT M++D+ H N +M LF+ VI
Sbjct: 504 TCISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTEMDIDIVHGNSYMSCLFFATVI 563
Query: 376 LIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVI 435
L+VDGI E+ M+++RL+VFYKQK++C YPAWAY IPAT+LKVPLSL+ESLVWTSLTYYVI
Sbjct: 564 LLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYSIPATVLKVPLSLLESLVWTSLTYYVI 623
Query: 436 GFSPELWRW---------VSFEKAFVYFCIESSVDHCAETLKIDQFMCFQLEV------- 479
G++PE +R+ V F ++ CI S T+ F+ V
Sbjct: 624 GYTPEAYRFFRQFILLFAVHFTSISMFRCIASIFQTGVATMTAGSFVMLITFVFAGFAIP 683
Query: 480 -------LQYGSSYYLVASLSH-NVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRG 531
L++G + V +S+ + LS N F W+++ TN T+GR IL+SRG
Sbjct: 684 YTDMPGWLKWG---FWVNPISYAEIGLSVNE----FLAPRWQQMQPTNVTLGRTILESRG 736
Query: 532 LNFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDD 591
LN+D+Y +W+SL AL GL ++FN F LALSFLK P SS AMIS K S +Q +K S
Sbjct: 737 LNYDDYMYWVSLCALLGLTIIFNTIFTLALSFLKSPTSSRAMISQDKLSELQGTKDSSSV 796
Query: 592 EHVEDVD--MNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDV 649
+ + +D M ++ +MILP++P+T+ FQDL Y +D P+EM+ + KLQLL ++
Sbjct: 797 KKNKPLDSPMKTIEDSGKMILPYKPLTITFQDLNYYVDVPVEMKAQGYN-EKKLQLLSEI 855
Query: 650 TGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCE 709
TG+ RPGVLTALMG+SGAGKTTLLDVLAGRKTSG +GEI+++GY K+QETF RVSGYCE
Sbjct: 856 TGSFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGYLKVQETFARVSGYCE 915
Query: 710 QTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769
QTDIHSP+IT+EESL +SAWLRL P+I+ +TK V VL+TIEL+ IK+SLVG+ GVSG
Sbjct: 916 QTDIHSPNITVEESLIYSAWLRLVPEIDPQTKIRFVKQVLETIELEEIKDSLVGVAGVSG 975
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 829
LSTEQRKRLT+ VELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA+TGRTIVCTIHQP
Sbjct: 976 LSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVCTIHQP 1035
Query: 830 SIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVT 889
SI IFE+FDELILLK GGRIIYSGPLG HSS VIEYF+ IPGV +IR+ YNPATWMLEVT
Sbjct: 1036 SIHIFEAFDELILLKRGGRIIYSGPLGQHSSCVIEYFKNIPGVAKIRDKYNPATWMLEVT 1095
Query: 890 SASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSCL 949
S S E EL +DF++IY +S LY+NN ELV++LS + DLHF F+QN W QFKSCL
Sbjct: 1096 SESVEIELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQFKSCL 1155
Query: 950 WKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLG 1009
WK LSYWR+P+YNL RI +T +S +FGLLFWN+GK+I+ QQ+LF +LG++Y +F+G
Sbjct: 1156 WKMSLSYWRSPTYNLTRIGHTFISSLIFGLLFWNQGKKIDTQQNLFTVLGAIYGLVLFVG 1215
Query: 1010 SMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIG 1069
NC+SAL Y +ER VMYRE+ AGMYS AYA AQV EIPY+ IQ+A +VI+ YPMIG
Sbjct: 1216 INNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSAEFVIVIYPMIG 1275
Query: 1070 FYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQ 1129
YAS+ K+FW+ Y +FC+++ F+YL + L++++PN VA+ L S F+ T++LFAGF+IP+
Sbjct: 1276 LYASSSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFMTFNLFAGFLIPK 1335
Query: 1130 PQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHLA 1189
PQIPKWW+W YYL+PTSWTL +SQYGDI +EI F E T+A FLE+YFGFHHDHL
Sbjct: 1336 PQIPKWWVWFYYLTPTSWTLNLFFSSQYGDIHQEINAFGETTTVARFLEDYFGFHHDHLT 1395
Query: 1190 VVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
+ A+ LI FP+ LA+++AFFV +LNFQ+R
Sbjct: 1396 ITAIILIAFPIALATMYAFFVAKLNFQKR 1424
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816648|ref|XP_002876207.1| ATPDR9/PDR9 [Arabidopsis lyrata subsp. lyrata] gi|297322045|gb|EFH52466.1| ATPDR9/PDR9 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1560 bits (4038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 743/1229 (60%), Positives = 942/1229 (76%), Gaps = 43/1229 (3%)
Query: 24 TGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSG 83
+GE+SYNG++L+EFVPQK SAY+SQYDLHI EMTVRET+DFS CQGVGSR DI++E+S
Sbjct: 231 SGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSK 290
Query: 84 REEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQ 143
RE+E IIPD ++D YMKA SV L++NLQTDY LKILGLDICA+TL+GD +RRGISGGQ
Sbjct: 291 REKEKGIIPDTEVDAYMKAISVEGLQRNLQTDYILKILGLDICAETLIGDVMRRGISGGQ 350
Query: 144 KRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPE 203
K+RLTT EM+VGP KA+FMD+ITNGLD ST+FQIV LQ AHI+ AT+L+SLLQP+PE
Sbjct: 351 KKRLTTA-EMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPE 409
Query: 204 TFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV-------ISRKDQAQYWF 256
+F LFDDI+LMA+G+I+YHGPR VL FFE CGFRCP+RK V IS+KDQAQYW
Sbjct: 410 SFDLFDDIMLMAKGRIMYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWR 469
Query: 257 HNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKA 316
H +LP+SFVSVDM +KFKE GKK+E LS+ Y +S+S K ++SF+V+SL WELF A
Sbjct: 470 HEDLPYSFVSVDMLSKKFKELSIGKKMEHTLSKPYDRSKSHKDALSFSVYSLPNWELFIA 529
Query: 317 CMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVIL 376
C+SRE LL KRNYF+Y+FKT QL++ A +TMT+++RT M +D+ H N +M +LF+ L+IL
Sbjct: 530 CISREYLLMKRNYFVYIFKTSQLVMAAFITMTVYIRTRMGIDIIHGNSYMSALFFALIIL 589
Query: 377 IVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIG 436
+VDG E+ M+ +RLAVFYKQK++C YPAWAY IPAT+LKVPLS ESLVWT LTYYVIG
Sbjct: 590 LVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTGLTYYVIG 649
Query: 437 FSPELWRW---------VSFEKAFVYFCIESSVDHCAETLKIDQFMCFQLEV-------- 479
++PE R+ V F ++ C+ + ++ F V
Sbjct: 650 YTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPP 709
Query: 480 ------LQYGSSYYLVASLSH-NVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGL 532
L++G + V LS+ + LS N F W ++ N T+GR IL++RG+
Sbjct: 710 PSMPAWLKWG---FWVNPLSYGEIGLSVNE----FLAPRWNQMQPNNVTLGRTILQTRGM 762
Query: 533 NFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDE 592
++D Y +W+SL AL G ++FN F LAL+FLK P SS AMIS K S +Q ++ S DD
Sbjct: 763 DYDGYMYWVSLYALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQGTENSTDDS 822
Query: 593 HVEDVDMNAHPNTSQ---MILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDV 649
V+ ++ T + M+LPF+P+T+ FQDL+Y +D P+EMR + KLQLL D+
Sbjct: 823 SVKKKTTDSPVKTEEEGNMVLPFKPLTVTFQDLKYFVDMPVEMRDQGYD-QKKLQLLSDI 881
Query: 650 TGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCE 709
TG RPG+LTALMGVSGAGKTTLLDVLAGRKTSG +G+I+++G+PKIQETF RVSGYCE
Sbjct: 882 TGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKIQETFARVSGYCE 941
Query: 710 QTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769
QTDIHSP+IT+EES+ +SAWLRLAP+I+S TK V VL+TIELD IK+SLVG+ GVSG
Sbjct: 942 QTDIHSPNITVEESVIYSAWLRLAPEIDSATKTKFVKQVLETIELDEIKDSLVGVTGVSG 1001
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 829
LSTEQRKRLTI VELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP
Sbjct: 1002 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 1061
Query: 830 SIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVT 889
SIDIFE+FDEL+LLK GGR+IY+GPLG HS +IEYFE +P +P+I++N+NPATWML+V+
Sbjct: 1062 SIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVS 1121
Query: 890 SASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSCL 949
S S E ELG+DF++IY DS LY+ N ELV+QLS + D+ F F+Q+ WGQF+S L
Sbjct: 1122 SQSVEVELGVDFAKIYHDSALYKRNAELVKQLSQPDSGSSDIQFKRTFAQSWWGQFRSIL 1181
Query: 950 WKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLG 1009
WK +LSYWR+PSYNLMR+++T+ +S +FG LFW +G+ I+ QQ +F + G++Y +FLG
Sbjct: 1182 WKMNLSYWRSPSYNLMRMIHTLVSSLIFGSLFWKQGQNIDTQQGMFTVFGAIYGLVLFLG 1241
Query: 1010 SMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIG 1069
NCSSA+ Y +ER VMYRE+ AGMYS AYA QV EIPY+ IQAA +VIITYPMIG
Sbjct: 1242 INNCSSAIQYIETERNVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIITYPMIG 1301
Query: 1070 FYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQ 1129
FY S YK+FW+ Y +FCS+++F+YL + LV+++PN VA+ L S FY ++LF+GF+IPQ
Sbjct: 1302 FYPSTYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVNFNLFSGFLIPQ 1361
Query: 1130 PQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHLA 1189
Q+P WWIWLYYL+PTSWTL G +SQYGDID++I VF E+ T+A FL++YFGFHHD LA
Sbjct: 1362 TQVPGWWIWLYYLTPTSWTLNGFFSSQYGDIDEKINVFGESTTVARFLKDYFGFHHDRLA 1421
Query: 1190 VVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
V AV I FP+ LAS+FAFFVG+LNFQ+R
Sbjct: 1422 VTAVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477643|ref|XP_002266393.2| PREDICTED: pleiotropic drug resistance protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1556 bits (4028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/1242 (60%), Positives = 953/1242 (76%), Gaps = 63/1242 (5%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
VTGE+SYNGYKL EFVPQK SAY+SQYDLHIPEMTVRET+DFS CQGVGSRA+I++E+S
Sbjct: 268 VTGEISYNGYKLNEFVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRAEIMMEVS 327
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE+EA I+PDPDIDTYMKA SV K+ LQTDY LKILGLDICAD +VGDA+RRGISGG
Sbjct: 328 KREKEAGIVPDPDIDTYMKAISVEGQKRTLQTDYVLKILGLDICADIMVGDAMRRGISGG 387
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QK+RLTTG EM+VGP +FMD+I+ GLD ST+FQIVTCLQ LAHIT+AT+L++LLQP+P
Sbjct: 388 QKKRLTTG-EMIVGPTNTLFMDEISTGLDSSTTFQIVTCLQQLAHITEATVLVTLLQPAP 446
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKA-------VISRKDQAQYW 255
ETF LFDD+ILMAEGKI+YHGPR VL+FFE CGF+CP+RK VIS+KDQ QYW
Sbjct: 447 ETFDLFDDLILMAEGKIVYHGPRSHVLQFFEHCGFKCPERKGAADFLQEVISKKDQEQYW 506
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
++ P+ +VSVD E FK SP G+KL+E+L++ Y KS+S K ++SF+ +SLS+WELFK
Sbjct: 507 CRSD-PYRYVSVDQLSEMFKASPLGRKLDEELAEPYDKSQSHKDAISFSKYSLSKWELFK 565
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVI 375
AC +RELLL KRN F+Y+FKT QL+I+A MTMT+F+RT M VD+ H+NYF+GSLFYTL+
Sbjct: 566 ACTARELLLMKRNSFVYVFKTTQLVIVALMTMTVFIRTRMAVDLQHSNYFLGSLFYTLIR 625
Query: 376 LIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVI 435
L+ +G++E+ +++ L VFYKQKE LYP WAY IP +ILK P SLVES++WTS+TYY I
Sbjct: 626 LMTNGVAELFLTISTLPVFYKQKEGYLYPVWAYSIPTSILKTPYSLVESILWTSITYYTI 685
Query: 436 GFSPELWRWVSFEKAFVYFCI-ESSVDHCAETLKIDQFMCFQLEVLQYGSSY-------- 486
G+SPE R+ F + + F + + S C +F+ + L S+
Sbjct: 686 GYSPEAKRF--FCQFLLLFALHQGSTSLC-------RFLASAFQTLITASTVGSLVLVGM 736
Query: 487 --------------------YLVASLSH-NVRLSSNNMIVYFKLIHWKKILFTNTTIGRE 525
+ V+ L++ + +S N F W+K+ NTTIGR
Sbjct: 737 YLFGGFIVPRPSLPPWLRWAFWVSPLTYGEIGISINE----FLAPRWQKVYAGNTTIGRR 792
Query: 526 ILKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRS 585
+L+S GLNF +F+WI L ALFG ++FN F LAL++ K PG S A+IS K S +Q S
Sbjct: 793 VLESHGLNFPSHFYWICLAALFGFTILFNIGFVLALTYFKSPGPSRAIISKKKLSQLQGS 852
Query: 586 K----GSCDDEHVEDVDMNAHP-----NTSQMILPFQPITMVFQDLQYSIDTPLEMRRRE 636
+ SC D + ++ P T +M+LPF+P+T+ F+D+QY +DTP EMR +
Sbjct: 853 EDCHSSSCLDND-STLSASSKPIAETRKTGKMVLPFEPLTVAFKDVQYFVDTPPEMRAKG 911
Query: 637 CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696
KLQLL D+TG+ +PGVLTALMGVSGAGKTTL+DVL+GRKT+G +G+I++ GYPK
Sbjct: 912 V-TERKLQLLHDITGSFKPGVLTALMGVSGAGKTTLMDVLSGRKTTGTIEGDIRIGGYPK 970
Query: 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
+Q+TF R+SGYCEQ DIHSPH+T+EESL +SAWLRL P+I+S+TK V V++TIEL+
Sbjct: 971 VQKTFARISGYCEQYDIHSPHVTVEESLIYSAWLRLPPEIDSETKYRFVEEVIETIELND 1030
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
IK+SLVG+PG SGLSTEQRKRLTI VELV+NPSIIFMDEPT+GLDARAAAIVMRAVKNV
Sbjct: 1031 IKDSLVGMPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRAVKNVV 1090
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIR 876
TGRT VCTIHQPSIDIFE+FDELIL+K GG+IIY+G LG HSS +I YFEGI G+P+I+
Sbjct: 1091 ATGRTTVCTIHQPSIDIFEAFDELILMKRGGQIIYTGLLGYHSSELIGYFEGISGLPKIK 1150
Query: 877 NNYNPATWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTR 936
+NYNPATWMLEVTSAS EAELGLDFS+IY++S LY+ ELV QLS +RDL+F R
Sbjct: 1151 DNYNPATWMLEVTSASVEAELGLDFSKIYKESSLYQVTIELVNQLSKPPPDSRDLNFPNR 1210
Query: 937 FSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFN 996
F QNGW QF +CLWK HLSYWR+P YN +R L I A+FLFG FW KG++I+N QDLFN
Sbjct: 1211 FPQNGWEQFMACLWKLHLSYWRSPEYNFVRFLFMILAAFLFGATFWQKGQKIDNAQDLFN 1270
Query: 997 ILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQ 1056
ILGS+Y + IFLG NCS+ LP+ A+ERTV+YRE+ AGMYS AY+FAQV IE+PY+L+Q
Sbjct: 1271 ILGSMYLAVIFLGINNCSTVLPHVATERTVVYREKFAGMYSSRAYSFAQVAIEVPYILLQ 1330
Query: 1057 AALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFY 1116
A LYV ITYPMIG+Y S YK+FW FY FC+ + F YLG+L+V+LSPN VAS L +A Y
Sbjct: 1331 AILYVAITYPMIGYYWSPYKVFWYFYATFCTFLYFVYLGMLIVSLSPNSQVASILATAAY 1390
Query: 1117 TTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIENKTIASF 1176
T +LF+GF++P P+IPKWWIW Y++ PTSW+L GLLTSQYGD+ KEI++F E K ++SF
Sbjct: 1391 TILNLFSGFLMPGPKIPKWWIWCYWICPTSWSLNGLLTSQYGDMKKEILIFGELKPVSSF 1450
Query: 1177 LEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218
L++YFGF HDHL +VAVAL+VFPVV ASLFA+F+ +LNFQ+R
Sbjct: 1451 LKDYFGFQHDHLGLVAVALLVFPVVFASLFAYFIDKLNFQRR 1492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1218 | ||||||
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.579 | 0.499 | 0.603 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.579 | 0.486 | 0.590 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.503 | 0.417 | 0.550 | 1.6e-310 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.568 | 0.475 | 0.492 | 6.4e-307 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.570 | 0.478 | 0.488 | 1.6e-301 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.573 | 0.491 | 0.486 | 9.5e-295 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.578 | 0.496 | 0.463 | 7.3e-286 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.587 | 0.502 | 0.454 | 1.1e-273 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.962 | 0.827 | 0.435 | 2.2e-263 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.789 | 0.667 | 0.437 | 1.3e-228 |
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2286 (809.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 427/708 (60%), Positives = 537/708 (75%)
Query: 512 WKKILFTNTTIGREILKSRGLNFDEYFFWIXXXXXXXXXXXXXXXXXXXXXXXKPPGSSP 571
W+K+ TN T+GR IL+SRGLN+D+Y +W+ K P SS
Sbjct: 707 WQKMQPTNVTLGRTILESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSR 766
Query: 572 AMISHGKFSGIQRSKGSCDDEHVE-DVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPL 630
MIS K S +Q +K S ++ D + + + +MILPF+P+T+ FQDL Y +D P+
Sbjct: 767 PMISQDKLSELQGTKDSSVKKNKPLDSSIKTNEDPGKMILPFKPLTITFQDLNYYVDVPV 826
Query: 631 EMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIK 690
EM+ + KLQLL ++TG RPGVLTALMG+SGAGKTTLLDVLAGRKTSG +GEI+
Sbjct: 827 EMKGQGYN-EKKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIR 885
Query: 691 VNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLK 750
++G+ K+QETF RVSGYCEQTDIHSP IT+EESL +SAWLRL P+IN +TK V VL+
Sbjct: 886 ISGFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLE 945
Query: 751 TIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
TIEL+ IK++LVG+ GVSGLSTEQRKRLT+ VELVANPSIIFMDEPTTGLDARAAAIVMR
Sbjct: 946 TIELEEIKDALVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMR 1005
Query: 811 AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIP 870
AVKNVA+TGRTIVCTIHQPSI IFE+FDEL+LLK GGR+IYSGPLG HSS VIEYF+ IP
Sbjct: 1006 AVKNVAETGRTIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIP 1065
Query: 871 GVPQIRNNYNPATWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARD 930
GV +IR+ YNPATWMLEVTS S E EL +DF++IY +S LY+NN ELV++LS + D
Sbjct: 1066 GVAKIRDKYNPATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSD 1125
Query: 931 LHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINN 990
LHF F+QN W QFKSCLWK LSYWR+PSYNLMRI +T +SF+FGLLFWN+GK+I+
Sbjct: 1126 LHFKRTFAQNWWEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDT 1185
Query: 991 QQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEI 1050
QQ+LF +LG++Y +F+G NC+SAL Y +ER VMYRE+ AGMYS AYA AQV EI
Sbjct: 1186 QQNLFTVLGAIYGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEI 1245
Query: 1051 PYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVAST 1110
PY+ IQ+A +VI+ YPMIGFYAS K+FW+ Y +FC+++ F+YL + L++++PN VA+
Sbjct: 1246 PYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAI 1305
Query: 1111 LFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIEN 1170
L S F+TT+++FAGF+IP+PQIPKWW+W YY++PTSWTL +SQYGDI ++I F E
Sbjct: 1306 LQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGET 1365
Query: 1171 KTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 1218
KT+ASFLE+YFGFHHD +++AFFV +LNFQ+R
Sbjct: 1366 KTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2267 (803.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 419/710 (59%), Positives = 537/710 (75%)
Query: 512 WKKILFTNTTIGREILKSRGLNFDEYFFWIXXXXXXXXXXXXXXXXXXXXXXXKPPGSSP 571
W ++ N T+GR IL++RG++++ Y +W+ K P SS
Sbjct: 742 WNQMQPNNFTLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSR 801
Query: 572 AMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQ---MILPFQPITMVFQDLQYSIDT 628
AMIS K S +Q ++ S +D V ++ T + M+LPF+P+T+ FQDL Y +D
Sbjct: 802 AMISQDKLSELQGTEKSTEDSSVRKKTTDSPVKTEEEDKMVLPFKPLTVTFQDLNYFVDM 861
Query: 629 PLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGE 688
P+EMR + KLQLL D+TG RPG+LTALMGVSGAGKTTLLDVLAGRKTSG +G+
Sbjct: 862 PVEMRDQGYD-QKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGD 920
Query: 689 IKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHV 748
I+++G+PK+QETF RVSGYCEQTDIHSP+IT+EES+ +SAWLRLAP+I++ TK V V
Sbjct: 921 IRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQV 980
Query: 749 LKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIV 808
L+TIELD IK+SLVG+ GVSGLSTEQRKRLTI VELVANPSIIFMDEPTTGLDARAAAIV
Sbjct: 981 LETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1040
Query: 809 MRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEG 868
MRAVKNVADTGRTIVCTIHQPSIDIFE+FDEL+LLK GGR+IY+GPLG HS +IEYFE
Sbjct: 1041 MRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFES 1100
Query: 869 IPGVPQIRNNYNPATWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAA 928
+P +P+I++N+NPATWML+V+S S E ELG+DF++IY DS LY+ N ELV+QLS +
Sbjct: 1101 VPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDSGS 1160
Query: 929 RDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEI 988
D+ F F+Q+ WGQFKS LWK +LSYWR+PSYNLMR+++T+ +S +FG LFW +G+ +
Sbjct: 1161 SDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQNL 1220
Query: 989 NNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTI 1048
+ QQ +F + G++Y +FLG NC+SAL Y +ER VMYRE+ AGMYS AYA QV
Sbjct: 1221 DTQQSMFTVFGAIYGLVLFLGINNCASALQYFETERNVMYRERFAGMYSATAYALGQVVT 1280
Query: 1049 EIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVA 1108
EIPY+ IQAA +VI+TYPMIGFY SAYK+FW+ Y +FCS+++F+YL + LV+++PN VA
Sbjct: 1281 EIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVA 1340
Query: 1109 STLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFI 1168
+ L S FY ++LF+GF+IPQ Q+P WWIWLYYL+PTSWTL G ++SQYGDI +EI VF
Sbjct: 1341 AILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINVFG 1400
Query: 1169 ENKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 1218
++ T+A FL++YFGFHHD S+FAFFVG+LNFQ+R
Sbjct: 1401 QSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1846 (654.9 bits), Expect = 1.6e-310, Sum P(2) = 1.6e-310
Identities = 340/618 (55%), Positives = 450/618 (72%)
Query: 604 NTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAH-KLQLLDDVTGTLRPGVLTALM 662
N M+LPF P+ M F D++Y +D P EMR + G+ +LQLL VTG RPGVLTALM
Sbjct: 854 NKKGMVLPFTPLAMSFDDVKYFVDMPGEMRDQ--GVTETRLQLLKGVTGAFRPGVLTALM 911
Query: 663 GVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEE 722
GVSGAGKTTL+DVLAGRKT G +G+++++G+PK+QETF R+SGYCEQTDIHSP +T+ E
Sbjct: 912 GVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRE 971
Query: 723 SLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGV 782
SL FSA+LRL ++ K V+ V++ +ELD +++S+VG+PGV+GLSTEQRKRLTI V
Sbjct: 972 SLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAV 1031
Query: 783 ELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842
ELVANPSIIFMDEPT+GLDARAAAIVMRAV+N DTGRT+VCTIHQPSIDIFE+FDEL+L
Sbjct: 1032 ELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELML 1091
Query: 843 LKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSASTEAELGLDFS 902
+K GG++IY+GPLG +S +V+EYFE PGV +I YNPATWMLE +S + E +L +DF+
Sbjct: 1092 MKRGGQVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFA 1151
Query: 903 QIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSY 962
++Y S L++ NK LV++LS A DL+F T+FSQN WGQFKSCLWKQ +YWR+P Y
Sbjct: 1152 ELYNQSALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDY 1211
Query: 963 NLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAAS 1022
NL+R + T+A S L G +FW G +N DL ++G+LYA+ IF+G NCS+ P A
Sbjct: 1212 NLVRFIFTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAV 1271
Query: 1023 ERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFY 1082
ERTV YRE++AGMYS + YA +QVT E+PY+LIQ Y +I Y M+GF A K FW +
Sbjct: 1272 ERTVFYRERAAGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVF 1331
Query: 1083 GIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYL 1142
+ S + ++Y G++ V+L+PN VAS SAFY ++LF+GF IP+P+IPKWWIW Y++
Sbjct: 1332 VSYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWI 1391
Query: 1143 SPTSWTLEGLLTSQYGDIDKEIMVF--IENKTIASFLEEYFGFHHDHXXXXXXXXXXXXX 1200
P +WT+ GL+ SQYGD++ I V + T+ ++E+++GF D
Sbjct: 1392 CPVAWTVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTV 1451
Query: 1201 XXXSLFAFFVGRLNFQQR 1218
+FAF + LNFQ R
Sbjct: 1452 FFAFIFAFCIRTLNFQTR 1469
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1801 (639.0 bits), Expect = 6.4e-307, Sum P(2) = 6.4e-307
Identities = 347/704 (49%), Positives = 474/704 (67%)
Query: 521 TIGREILKSRGLNFDEYFFWIXXXXXXXXXXXXXXXXXXXXXXXKPPGSSPA-MISHGKF 579
T+G +LKSRG + Y+FWI P G+S A ++ GK
Sbjct: 757 TVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGK- 815
Query: 580 SGIQRSKGSCDDEHVEDVDMNAHPNTSQ---MILPFQPITMVFQDLQYSIDTPLEMRRRE 636
+ KG V++N+ N M+LPFQP+++ F ++ Y +D P EM+ +
Sbjct: 816 ---DKQKGENRGTEGSVVELNSSSNKGPKRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQ- 871
Query: 637 CGL-AHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695
G+ +LQLL DV G RPG+LTAL+GVSGAGKTTL+DVLAGRKT G +G I ++GYP
Sbjct: 872 -GVEGDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 930
Query: 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD 755
K Q TF RVSGYCEQ DIHSPH+T+ ESL +SAWLRL+ I+ KT+ V V++ +EL
Sbjct: 931 KNQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELK 990
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
++ S+VG+PGV GLSTEQRKRLTI VELVANPSIIFMDEPT+GLDARAAAIVMR V+N
Sbjct: 991 PLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1050
Query: 816 ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQI 875
DTGRT+VCTIHQPSIDIFESFDEL+L+K GG++IY+G LG+HS +++EYFE + GVP+I
Sbjct: 1051 VDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKI 1110
Query: 876 RNNYNPATWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTT 935
+ YNPATWML+VT+ S E+++ LDF+QI+ +S LY N+EL++ LST ++D++F T
Sbjct: 1111 NDGYNPATWMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKT 1170
Query: 936 RFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLF 995
+++Q+ Q K+C WKQ+ SYWR P YN +R L T+ LFGL+FW G + N+QDL
Sbjct: 1171 KYAQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLN 1230
Query: 996 NILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLI 1055
N G++YA+ +FLG++N ++ P A ERTV YRE++AGMYS + YA +QV +EI Y I
Sbjct: 1231 NFFGAMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTI 1290
Query: 1056 QAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAF 1115
Q +Y +I Y MIG + K W +Y + S + F+ G++L+AL+PN +A S F
Sbjct: 1291 QTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFF 1350
Query: 1116 YTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVF-IENKTIA 1174
+ ++LF+GF+IP+PQIP WW W Y+ +P +WTL GL+TSQ GD D + + I + +
Sbjct: 1351 LSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHISGIGDIDLK 1410
Query: 1175 SFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 1218
+ L+E FGF HD +FA+ + LNFQ+R
Sbjct: 1411 TLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1774 (629.5 bits), Expect = 1.6e-301, Sum P(2) = 1.6e-301
Identities = 343/702 (48%), Positives = 469/702 (66%)
Query: 521 TIGREILKSRGLNFDEYFFWIXXXXXXXXXXXXXXXXXXXXXXXKPPGSSPA--MISHGK 578
T+G +LKSRG + Y+FWI P G+S A ++ GK
Sbjct: 755 TVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGK 814
Query: 579 FSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECG 638
+ S VE ++H M+LPFQP+++ F ++ Y +D P EM+ + G
Sbjct: 815 DKH-KGSHSGTGGSVVELTSTSSHGPKKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQ--G 871
Query: 639 L-AHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697
+ +LQLL DV G RPGVLTAL+GVSGAGKTTL+DVLAGRKT G +G I ++GYPK
Sbjct: 872 VEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKN 931
Query: 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
Q TF RVSGYCEQ DIHSPH+T+ ESL +SAWLRL+ I++KT+ V V++ +EL +
Sbjct: 932 QATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPL 991
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817
+ S+VG+PGV GLSTEQRKRLTI VELVANPSIIFMDEPT+GLDARAAAIVMR V+N D
Sbjct: 992 RNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1051
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRN 877
TGRT+VCTIHQPSIDIFESFDEL+L+K GG++IY+G LG+HS +++EYFE I GVP+I++
Sbjct: 1052 TGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKD 1111
Query: 878 NYNPATWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRF 937
YNPATWML+VT+ S E+++ +DF+QI+ +S + N+EL+++LST + DL+F T++
Sbjct: 1112 GYNPATWMLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKY 1171
Query: 938 SQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNI 997
+Q Q K+C WK + S WR P YN +R L T+ LFGLLFW G +I +QDL N
Sbjct: 1172 AQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNF 1231
Query: 998 LGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQA 1057
G++YA+ +FLG+ N ++ P A ERTV YRE++AGMYS + YA +QV +EI Y IQ
Sbjct: 1232 FGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQT 1291
Query: 1058 ALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYT 1117
+Y +I Y MIG+ + K FW +Y + + F+ G++LVAL+PN +A S F +
Sbjct: 1292 GVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLS 1351
Query: 1118 TYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVF-IENKTIASF 1176
++LF+GF+IP+PQIP WW W Y+ SP +WTL G++TSQ GD D + + + + ++ +
Sbjct: 1352 FWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHITGVGDMSLKTL 1411
Query: 1177 LEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 1218
L+ FGF +D FA+ + LNFQ+R
Sbjct: 1412 LKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1756 (623.2 bits), Expect = 9.5e-295, Sum P(2) = 9.5e-295
Identities = 345/709 (48%), Positives = 466/709 (65%)
Query: 512 WKKILFTNT-TIGREILKSRGLNFDEYFFWIXXXXXXXXXXXXXXXXXXXXXXXKPPGSS 570
W + + ++ T+G LKSRG Y++WI G
Sbjct: 723 WSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKP 782
Query: 571 PAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPL 630
A+I+ S + S E V V+ A+ M+LPF+P ++ F ++ YS+D P
Sbjct: 783 QAVIAEEPASD-ETELQSARSEGV--VEAGANKKRG-MVLPFEPHSITFDNVVYSVDMPQ 838
Query: 631 EMRRRECGLAH-KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEI 689
EM E G +L LL V G RPGVLTALMGVSGAGKTTL+DVLAGRKT G G I
Sbjct: 839 EMI--EQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNI 896
Query: 690 KVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
++GYPK Q+TF R+SGYCEQTDIHSPH+T+ ESL +SAWLRL +++ + + V+
Sbjct: 897 TISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVM 956
Query: 750 KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
+ +EL ++++LVG+PG SGLSTEQRKRLTI VELVANPSIIFMDEPT+GLDARAAAIVM
Sbjct: 957 ELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1016
Query: 810 RAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGI 869
R V+N DTGRT+VCTIHQPSIDIFE+FDEL LLK GG IY GPLG+ S+ +I YFE I
Sbjct: 1017 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESI 1076
Query: 870 PGVPQIRNNYNPATWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAAR 929
G+ +I YNPATWMLEV++ S EA LG+DF+Q+Y++S LY+ NKEL+++LS ++
Sbjct: 1077 QGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSK 1136
Query: 930 DLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEIN 989
DL+F T++SQ+ Q + LWKQH SYWR P Y +R L TI + +FG +FW+ G +
Sbjct: 1137 DLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTK 1196
Query: 990 NQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIE 1049
+QDL N +GS+Y + +FLG N +S P ERTV YREQ+AGMYS + YAFAQV IE
Sbjct: 1197 TRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIE 1256
Query: 1050 IPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVAS 1109
IPY+L+QA +Y +I Y MIGF +A K FW + ++ S ++F++ G++ VA++PN +AS
Sbjct: 1257 IPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIAS 1316
Query: 1110 TLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIE 1169
+ SAFY ++LF+GF+IP+P +P WW W Y+L P +WTL GL+ SQ+GDI + +
Sbjct: 1317 VVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMAD--S 1374
Query: 1170 NKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 1218
N ++ F+ E++G+ +FA + NFQ+R
Sbjct: 1375 NMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1713 (608.1 bits), Expect = 7.3e-286, Sum P(2) = 7.3e-286
Identities = 334/721 (46%), Positives = 467/721 (64%)
Query: 511 HWKKIL--FTNTTIGREILKSRGLNFDEYFFWIXXXXXXXXXXXXXXXXXXXXXXXKPPG 568
+W+K T+ ++G +LK R L Y++WI P G
Sbjct: 703 NWQKTAGNHTSDSLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWG 762
Query: 569 SSPAMISHGKFSGIQRSKGSCDDEHVEDV-DMNAHPNTSQ--------MILPFQPITMVF 619
A++S + +R K DE V ++ + H + M+LPFQP+++ F
Sbjct: 763 KFQAVVSREELD--EREKKRKGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSF 820
Query: 620 QDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR 679
++ Y +D PL ++ + L +LQLL ++TG RPGVLTAL+GVSGAGKTTL+DVLAGR
Sbjct: 821 SNINYYVDVPLGLKEQGI-LEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGR 879
Query: 680 KTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSK 739
KT G +G++ ++G+PK QETF R+SGYCEQ D+HSP +T+ ESL FSA LRL I+S+
Sbjct: 880 KTGGTIEGDVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSE 939
Query: 740 TKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799
T+ V+ V++ +EL + +LVG+PGV GLSTEQRKRLTI VELVANPSI+FMDEPT+G
Sbjct: 940 TQRAFVHEVMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 999
Query: 800 LDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHS 859
LDARAAAIVMR V+N+ +TGRTIVCTIHQPSIDIFESFDEL+ +K GG +IY+GPLG S
Sbjct: 1000 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKS 1059
Query: 860 SRVIEYFEGIPGVPQIRNNYNPATWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVR 919
+I+YFE I GV +I+ +NPA WML+VT+++ E LG+DF++IY +S L + NKEL+
Sbjct: 1060 CELIKYFESIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIE 1119
Query: 920 QLSTSGGAARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGL 979
LS A+++ F TR+SQ+ + QF +CLWKQ+LSYWR P Y +R T+ S + G
Sbjct: 1120 VLSKPSNIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGT 1179
Query: 980 LFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPL 1039
+ W G + + QQ LFN +GS+YA+ +F+G N ++A P + ER V YRE++AGMYS L
Sbjct: 1180 ICWKFGSKRDTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSAL 1239
Query: 1040 AYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLV 1099
+AFAQV IE PY+L Q+ +Y I Y M F SA K W + ++ S+M F++ G++
Sbjct: 1240 PFAFAQVFIEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTT 1299
Query: 1100 ALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGD 1159
A++PN VAS + + FY ++LF+GF+IP +IP WW W Y+ +P +WTL GLL SQYGD
Sbjct: 1300 AITPNHNVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGD 1359
Query: 1160 IDKEIMVF--IENKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQ 1217
++ + + I + LE+ G+ HD +FAF + NFQ+
Sbjct: 1360 DERSVKLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQR 1419
Query: 1218 R 1218
R
Sbjct: 1420 R 1420
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1675 (594.7 bits), Expect = 1.1e-273, Sum P(2) = 1.1e-273
Identities = 334/735 (45%), Positives = 472/735 (64%)
Query: 487 YLVASLSHNVRLSSNNMIVYFKLIHWKK-ILFTNTTIGREILKSRGLNFDEYFFWIXXXX 545
+ V+ LS+ R + N F W ++TTIG +LK R ++Y++WI
Sbjct: 708 FWVSPLSYGQRAIAVNE---FTATRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAV 764
Query: 546 XXXXXXXXXXXXXXXXXXXKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNT 605
P + A++ ++E D N +
Sbjct: 765 LIGYAILFNNVVTLALAYLNPLRKARAVVLDDP-----------NEETALVADANQVISE 813
Query: 606 SQ-MILPFQPITMVFQDLQYSIDTPLEMRRRECGLAH-KLQLLDDVTGTLRPGVLTALMG 663
+ MILPF+P+TM F ++ Y +D P EMR + G+ +LQLL +V+G PGVLTAL+G
Sbjct: 814 KKGMILPFKPLTMTFHNVNYYVDMPKEMRSQ--GVPETRLQLLSNVSGVFSPGVLTALVG 871
Query: 664 VSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEES 723
SGAGKTTL+DVLAGRKT G +G+I+++G+PK Q+TF R+SGY EQ DIHSP +T+EES
Sbjct: 872 SSGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEES 931
Query: 724 LFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVE 783
L+FSA LRL +I + K + V V++ +ELD ++ +LVG+PG +GLSTEQRKRLTI VE
Sbjct: 932 LWFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVE 991
Query: 784 LVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843
LVANPSIIFMDEPT+GLDARAAAIVMR V+N DTGRT+VCTIHQPSIDIFE+FDEL+L+
Sbjct: 992 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1051
Query: 844 KTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSASTEAELGLDFSQ 903
K GG++IY G LG HS +++YF+GI GVP I + YNPATWMLEVT+ + E + ++F+
Sbjct: 1052 KRGGQVIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFAD 1111
Query: 904 IYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYN 963
+Y+ S + + ++QLS + + FT+R+SQN QF CLWKQ+L YWR+P YN
Sbjct: 1112 LYKKSDQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYN 1171
Query: 964 LMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASE 1023
L+R++ T A+F+ G +FW+ G + + QDL ++G+LY++ +FLG N SS P + E
Sbjct: 1172 LVRLVFTTIAAFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSIE 1231
Query: 1024 RTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYG 1083
RTV YRE++AGMY+P+ YA AQ +EIPY+L Q LY +ITY IGF + K
Sbjct: 1232 RTVFYREKAAGMYAPIPYAAAQGLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVF 1291
Query: 1084 IFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLS 1143
+F + F++ G++ V L+PN +A+ + SAFY+ ++L +GF++ +P IP WWIW YY+
Sbjct: 1292 MFLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYIC 1351
Query: 1144 PTSWTLEGLLTSQYGDIDKEIMVFIENKTIASFLEEYFGFHHDHXXXXXXXXXXXXXXXX 1203
P +WTL+G++ SQ GD++ I + + T+ F+E YFG+ +
Sbjct: 1352 PVAWTLQGVILSQLGDVESMINEPLFHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFF 1411
Query: 1204 SLFAFFVGRLNFQQR 1218
S FA V LNFQ+R
Sbjct: 1412 SAFALSVKYLNFQRR 1426
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2534 (897.1 bits), Expect = 2.2e-263, P = 2.2e-263
Identities = 539/1238 (43%), Positives = 766/1238 (61%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
VTG V+YNG+ LEEFVPQK SAY+SQ D+H+ MTV+ETLDFS CQGVG+R D+L EL
Sbjct: 203 VTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTRYDLLSELV 262
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE++A I+P+P++D +MK+ + +K +L TDY L+ILGLDIC DT+VGD + RGISGG
Sbjct: 263 RREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGDEMIRGISGG 322
Query: 143 QKRRLTTGR------------EMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITD 190
QK+R+TTG E+ G + + +I L F T L L
Sbjct: 323 QKKRVTTGEMIVGPTKTLFMDEISTG-LDSSTTYQIVKCLQEIVRFTDATVLMSLLQPAP 381
Query: 191 ATIL----ISLLQPSPETFHLFDDIILMAEGKILYHGP-RESVLEFFESCGFRCPDRKAV 245
T I LL + D +L + P R+ +F + V
Sbjct: 382 ETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQE----------V 431
Query: 246 ISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLXXXXXXXXXXXXXXXXXX 305
SRKDQ QYW ++ P+S++SV F ++F+ G LE+DL
Sbjct: 432 TSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKK 491
Query: 306 XXXXRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEV-DVFHANY 364
+ +LFK C RELLL KRN F Y+ KT+Q+II+A + T++LRT M +
Sbjct: 492 HSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAV 551
Query: 365 FMGSLFYTLVILIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVES 424
++G+L +++++ + +G +E+ + ++RL VFYKQ+++ +P W + +P +L +P+S+ ES
Sbjct: 552 YIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFES 611
Query: 425 LVWTSLTYYVIGFSPELWRW-----VSF---EKAFVYF------CIESSVDHCAETLKI- 469
+VW ++TYY+IGF+PEL R+ V F + A F C + + L I
Sbjct: 612 VVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVIL 671
Query: 470 -----DQFMCFQLEVLQYGSSYYLVASLSHNV-RLSSNNMIVYFKLIHWKKILFTNTTIG 523
F+ + E+ ++ Y V+ +++ L+ N M+ + I+ + +T++G
Sbjct: 672 LLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAP-RWIN-QPSSDNSTSLG 729
Query: 524 REILKSRGLNFDEYFFWIXXXXXXXXXXXXXXXXXXXXXXXKPPGSSPAMISHGKFSGIQ 583
+L+ + D ++WI P A++S +
Sbjct: 730 LAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENTEENR 789
Query: 584 RSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAH-K 642
GS + +D+ M+LPF P+TM F ++ Y +D P EM+ E G++ K
Sbjct: 790 AENGSKS----KSIDVKRG-----MVLPFTPLTMSFDNVNYYVDMPKEMK--EQGVSKDK 838
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFV 702
LQLL +VTG RPGVLTALMGVSGAGKTTL+DVLAGRKT G +G+I+++G+PK QETF
Sbjct: 839 LQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFA 898
Query: 703 RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLV 762
R+SGYCEQ DIHSP +T++ESL +SA+LRL ++ K V+ V++ +EL+ +K+++V
Sbjct: 899 RISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVV 958
Query: 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTI 822
G+PG++GLSTEQRKRLTI VELVANPSIIFMDEPT+GLDARAAAIVMR V+N DTGRT+
Sbjct: 959 GLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1018
Query: 823 VCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPA 882
VCTIHQPSIDIFE+FDEL+LLK GG++IY+GPLG +S ++IEYF+ I GVP+I+ YNPA
Sbjct: 1019 VCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPA 1078
Query: 883 TWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGW 942
TWMLEV+S + EA+L +DF++ Y+ S LY+ NK LV++LST A DL+F+TRFSQ+
Sbjct: 1079 TWMLEVSSMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLL 1138
Query: 943 GQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLY 1002
GQFKSCLWKQ ++YWRTP YNL R T+AA+ + G +FW G + N DL ++G++Y
Sbjct: 1139 GQFKSCLWKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAMY 1198
Query: 1003 ASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVI 1062
A+ +F+G N SS P A ER+V YRE++A MYS L YA AQV EIPY+LIQ Y +
Sbjct: 1199 AAVLFVGVNNSSSVQPLIAVERSVFYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYTL 1258
Query: 1063 ITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLF 1122
I Y M+ F + K FW ++ F S + F+Y G++ VAL+PN VA+ AFY ++LF
Sbjct: 1259 IIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLF 1318
Query: 1123 AGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMV--FIENKTIASFLEEY 1180
+GFVIP+P+IPKWWIW Y++ P +WT+ GL+ SQYGD++ I V + TI ++E +
Sbjct: 1319 SGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENH 1378
Query: 1181 FGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 1218
+G+ D +FAF + LNFQQR
Sbjct: 1379 YGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2206 (781.6 bits), Expect = 1.3e-228, P = 1.3e-228
Identities = 438/1002 (43%), Positives = 627/1002 (62%)
Query: 245 VISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLXXXXXXXXXXXXXXXXX 304
V S+KDQ QYW P+ ++ V F FK+ G KL +L
Sbjct: 453 VTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFD 512
Query: 305 XXXXXRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEV-DVFHAN 363
+ EL K+C +E +L KRN F Y+FKT+Q+IIIA +T TL+LRT M + AN
Sbjct: 513 KYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDAN 572
Query: 364 YFMGSLFYTLVILIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVE 423
++GSL + +++ + +G++E+ M+++RL VFYKQ+++ +P W Y +P +L +P+S+ E
Sbjct: 573 IYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFE 632
Query: 424 SLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESS-------VDHCAETLKIDQ----- 471
S W +TYY IG++P+ R+ F++ + F I+ + T+ I
Sbjct: 633 STAWMVVTYYSIGYAPDAERF--FKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVL 690
Query: 472 ----------FMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTT 521
F+ + E+ + Y ++ LS+ + N + + W + N+T
Sbjct: 691 VLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPR---WMNKMSGNST 747
Query: 522 --IGREILKSRGLNFDEYFFWIXXXXXXXXXXXXXXXXXXXXXXXKPPGSSPAMISHGKF 579
+G +L + D+ ++WI P G + A++ +
Sbjct: 748 TRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEED 807
Query: 580 SGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGL 639
+ GS + +E V M+LPF P+ M F D++Y +D P EMR E G+
Sbjct: 808 EEAKGKAGSNKETEMESVSAK-----KGMVLPFTPLAMSFDDVKYFVDMPAEMR--EQGV 860
Query: 640 AH-KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ 698
+LQLL VT RPGVLTALMGVSGAGKTTL+DVLAGRKT G +G+++V+G+PK Q
Sbjct: 861 QETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKKQ 920
Query: 699 ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK 758
ETF R+SGYCEQTDIHSP +T+ ESL FSA+LRLA +++ + K V+ V++ +EL ++
Sbjct: 921 ETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVDLR 980
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
+++VG+PGV+GLSTEQRKRLTI VELVANPSIIFMDEPT+GLDARAAAIVMRAV+N DT
Sbjct: 981 DAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT 1040
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNN 878
GRT+VCTIHQPSIDIFE+FDEL+L+K GG +IYSGPLG +S +V+EYFE PGVP+I
Sbjct: 1041 GRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEK 1100
Query: 879 YNPATWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFS 938
YNPATWMLE +S + E +LG+DF+++Y+ S L + NK LV++LS A DL+F T+FS
Sbjct: 1101 YNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFS 1160
Query: 939 QNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNIL 998
QN WGQFKSCLWKQ +YWR+P YNL+R + T+A S + G +FW G + +N QDL ++
Sbjct: 1161 QNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLTMVI 1220
Query: 999 GSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAA 1058
G++YA+ +F+G NCS+ P A ERTV YRE++AGMYS + YA +QVT E+PY+LIQ
Sbjct: 1221 GAIYAAVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCELPYVLIQTT 1280
Query: 1059 LYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTT 1118
Y +I Y M+GF A K W + + S + ++Y G++ V+L+PN VAS SAFY
Sbjct: 1281 YYSLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGI 1340
Query: 1119 YSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVF--IENKTIASF 1176
++LF+GF IP+P+IPKWW+W Y++ P +WT+ GL+TSQYGD++ I + T+ +
Sbjct: 1341 FNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGLTVKQY 1400
Query: 1177 LEEYFGFHHDHXXXXXXXXXXXXXXXXSLFAFFVGRLNFQQR 1218
+++ +GF D+ +FAF + LNFQ R
Sbjct: 1401 IKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.4843 | 0.9745 | 0.8146 | yes | no |
| Q9ZUT8 | AB33G_ARATH | No assigned EC number | 0.6027 | 0.9729 | 0.8386 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.6385 | 0.9729 | 0.8189 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| fgenesh4_pm.C_LG_X000603 | hypothetical protein (1455 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1218 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-98 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-95 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-87 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-73 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 9e-61 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-59 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-50 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-49 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-44 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 8e-42 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-41 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-33 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-31 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-27 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-27 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-25 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-25 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 9e-25 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-24 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 8e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-23 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-23 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 2e-23 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-21 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-20 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-19 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 8e-19 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-19 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-18 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-17 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-17 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-16 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-16 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-16 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 8e-16 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-16 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-15 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-15 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-15 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-15 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-15 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-15 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-15 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 9e-15 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-14 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-14 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-14 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-14 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-14 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-13 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-13 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-13 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-13 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-12 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-12 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-12 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 6e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 8e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 8e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-11 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-11 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-11 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-11 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-11 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 8e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 8e-11 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-10 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-10 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-10 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-10 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-10 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-10 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-09 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-09 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-09 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-09 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-09 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-09 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-09 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-09 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-09 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-09 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-09 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 6e-09 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-09 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-08 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 1e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-08 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-08 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-08 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-08 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 7e-08 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 8e-08 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 9e-08 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 9e-08 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-07 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-07 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-07 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-07 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-07 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-07 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-07 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-07 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-07 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-07 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-07 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-07 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 8e-07 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 8e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 9e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-06 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-06 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-06 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-06 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-06 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-06 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 7e-06 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 7e-06 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 9e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 9e-06 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-05 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-05 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-05 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-05 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-05 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-05 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-05 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-05 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-05 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-05 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 7e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 7e-05 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-05 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 8e-05 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 8e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 8e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 9e-05 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-04 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-04 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-04 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 3e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-04 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-04 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-04 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 8e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-04 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 9e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 9e-04 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 0.001 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 0.001 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 0.001 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 0.001 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 0.001 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 0.001 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.001 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.001 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.001 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.001 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.001 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.001 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.001 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.001 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 0.002 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 0.002 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 0.002 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 0.002 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 0.002 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.002 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 0.002 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.002 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 0.002 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.002 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.002 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.003 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.003 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.003 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 0.003 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 0.004 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.004 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1406 bits (3641), Expect = 0.0
Identities = 616/1262 (48%), Positives = 866/1262 (68%), Gaps = 78/1262 (6%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
V+GE++YNGY+L EFVP+K SAY+SQ D+H+ MTV+ETLDFS CQGVG+R D+L EL+
Sbjct: 221 VSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELA 280
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
RE++A I P+ ++D +MKAT++ +K +L TDY LKILGLDIC DT+VGD + RGISGG
Sbjct: 281 RREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGG 340
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QK+R+TTG EM+VGP K +FMD+I+ GLD ST++QIV CLQ + H+T+AT+L+SLLQP+P
Sbjct: 341 QKKRVTTG-EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAP 399
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKA-------VISRKDQAQYW 255
ETF LFDDIIL++EG+I+Y GPR+ +LEFFESCGF+CP+RK V S+KDQ QYW
Sbjct: 400 ETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYW 459
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315
P+ ++SV F E+FK G +LE +LS + KS+S K+++ F+ +S+ + EL K
Sbjct: 460 ADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519
Query: 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGM----EVDVFHANYFMGSLFY 371
AC +E LL KRN F+Y+FKT+Q+II+A + T+FLRT M E D ++G+L +
Sbjct: 520 ACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEED---GALYIGALLF 576
Query: 372 TLVILIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLT 431
+++I + +G +E+ + ++RL VFYKQ+++ +P W + +P +L +P+S++ES+VW +T
Sbjct: 577 SMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVIT 636
Query: 432 YYVIGFSPELWRWVSFEKAFVYFCIESS-------VDHCAETLKIDQ------------- 471
YY IGF+PE R+ F++ + F I+ + T+ I
Sbjct: 637 YYSIGFAPEASRF--FKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLL 694
Query: 472 --FMCFQLEVLQYGSSYYLVASLSHNVR-LSSNNMIVYFKLIHWKKILFTN--TTIGREI 526
F+ + E+ + Y V+ LS+ L+ N M W + ++ T +G +
Sbjct: 695 GGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFA----PRWMNKMASDNSTRLGTAV 750
Query: 527 LKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISH-------GKF 579
L + D+ ++WI +GAL G ++FN F LAL++L P G A+IS G+
Sbjct: 751 LNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEE 810
Query: 580 SGIQRSKGSCDDEHVEDVDMNAHPNTSQ--------------------MILPFQPITMVF 619
I RS S D + +V + N M+LPF P+ M F
Sbjct: 811 DSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSF 870
Query: 620 QDLQYSIDTPLEMRRRECGLAH-KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG 678
D+ Y +D P EM+ E G+ +LQLL +VTG RPGVLTALMGVSGAGKTTL+DVLAG
Sbjct: 871 DDVNYFVDMPAEMK--EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG 928
Query: 679 RKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINS 738
RKT G +G+I+++G+PK QETF R+SGYCEQ DIHSP +T+ ESL +SA+LRL +++
Sbjct: 929 RKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSK 988
Query: 739 KTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798
+ K V+ V++ +ELD +K+++VG+PGV+GLSTEQRKRLTI VELVANPSIIFMDEPT+
Sbjct: 989 EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1048
Query: 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNH 858
GLDARAAAIVMR V+N DTGRT+VCTIHQPSIDIFE+FDEL+L+K GG++IYSGPLG +
Sbjct: 1049 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRN 1108
Query: 859 SSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELV 918
S ++IEYFE IPGVP+I+ YNPATWMLEV+S + E +LG+DF++ Y+ S LY+ NK LV
Sbjct: 1109 SHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALV 1168
Query: 919 RQLSTSGGAARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFG 978
++LST A DL+F T++SQ+ WGQFKSCLWKQ +YWR+P YNL+R T+AA+ + G
Sbjct: 1169 KELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVG 1228
Query: 979 LLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSP 1038
+FW G + +N DL ++G++YA+ +F+G NCS+ P A ERTV YRE++AGMYS
Sbjct: 1229 TIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSA 1288
Query: 1039 LAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLL 1098
L YA AQV EIPY+LIQ Y +I Y M+ F +A K FW ++ F S + F+Y G++
Sbjct: 1289 LPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMT 1348
Query: 1099 VALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYG 1158
V+L+PN VA+ +AFY ++LF+GF IP+P+IPKWW+W Y++ P +WT+ GL+ SQYG
Sbjct: 1349 VSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYG 1408
Query: 1159 DIDKEIMV--FIENKTIASFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGRLNFQ 1216
D++ I V + TI ++++++G+ D + VA L+ F V A +FAF + LNFQ
Sbjct: 1409 DVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQ 1468
Query: 1217 QR 1218
R
Sbjct: 1469 TR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 580 bits (1497), Expect = 0.0
Identities = 213/648 (32%), Positives = 339/648 (52%), Gaps = 36/648 (5%)
Query: 540 WISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDM 599
W + G + G + F F + L F K ++ + ++R+K + + D+
Sbjct: 669 WRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRR-GSLKRAKKAGETSASNKNDI 727
Query: 600 NAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRR---------ECGL-AHKLQLLDDV 649
A +L +T D+ D E E + K +L++V
Sbjct: 728 EA-----GEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNV 782
Query: 650 TGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCE 709
G ++PG LTALMG SGAGKTTLL+VLA R T+G G ++ + +F R GY +
Sbjct: 783 DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQ 842
Query: 710 QTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769
Q D+H P T+ ESL FSA+LR ++ K + V V+K +E++ +++VG+PG G
Sbjct: 843 QQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EG 901
Query: 770 LSTEQRKRLTIGVELVANP-SIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQ 828
L+ EQRKRLTIGVELVA P ++F+DEPT+GLD++ A + + ++ +AD G+ I+CTIHQ
Sbjct: 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQ 961
Query: 829 PSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEV 888
PS +FE FD L+LL+ GG+ +Y G LG +S +I YFE G P+ + NPA WMLEV
Sbjct: 962 PSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEV 1020
Query: 889 TSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTT---RFSQNGWGQF 945
A+ A D+ +++ +S Y+ K + +L A D + +++ + W QF
Sbjct: 1021 IGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQF 1080
Query: 946 KSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASF 1005
K LW+ YWRTP Y + TI A+ G F+ G + Q L N + +++ +
Sbjct: 1081 KLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVG---TSLQGLQNQMFAVFMAT 1137
Query: 1006 IFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITY 1065
+ + P+ A RE+ + +S LA+ AQ+T+EIPY L+ ++ I Y
Sbjct: 1138 VLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWY 1197
Query: 1066 PMIGFYASAYK---------IFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFY 1116
+GFY +A K +FW + FS LG ++++ +PN A+ L S +
Sbjct: 1198 YPVGFYWNASKTGQVHERGVLFWLLS--TMFFLYFSTLGQMVISFNPNADNAAVLASLLF 1255
Query: 1117 TTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEI 1164
T F G + P ++P +WI++Y SP ++ ++ LL++ D+
Sbjct: 1256 TMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTC 1303
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 327 bits (840), Expect = 1e-98
Identities = 174/541 (32%), Positives = 271/541 (50%), Gaps = 30/541 (5%)
Query: 637 CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFK-GEIKVNGYP 695
C + LL +V+G +PG L A+MG SGAGKTTL++ LA R G G + +NG P
Sbjct: 32 CRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMP 91
Query: 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD 755
+ +S Y +Q D+ P +T+ E L F A LR+ ++ K K + V+ VL+ + L
Sbjct: 92 IDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR 151
Query: 756 GIKESLVGIPG-VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 814
+ +G+PG V GLS +RKRL EL+ +P ++F DEPT+GLD+ A V++ +K
Sbjct: 152 KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKG 211
Query: 815 VADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFE--GIPGV 872
+A G+TI+CTIHQPS ++FE FD++IL+ GR+ Y G + + +F G P
Sbjct: 212 LAQKGKTIICTIHQPSSELFELFDKIILM-AEGRVAYLGS----PDQAVPFFSDLGHP-- 264
Query: 873 PQIRNNYNPATWMLEV--TSASTEAELGLDFSQIYE---DSLLYENNKELVRQLSTSGG- 926
NYNPA + ++V +E E +I + S + + S G
Sbjct: 265 --CPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGG 322
Query: 927 --AARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNK 984
+ ++ + W QF + L + LS R P +R++ T+ + L GL++ +
Sbjct: 323 LVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQ 382
Query: 985 GKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFA 1044
G Q+ + NI G+L+ + N + +E V RE +G+Y AY A
Sbjct: 383 G---LTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLA 439
Query: 1045 QVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSF---SYLGLLLVAL 1101
+ E+P +I AL+ ITY MIG + A F F F + + G L+
Sbjct: 440 KTIAELPLFIILPALFTSITYWMIGLRSGATH-FLTFL--FLVTLVANVATSFGYLISCA 496
Query: 1102 SPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDID 1161
+ ++A T+ F + LF GF I IP ++ WL YLS + EGLL +Q+ D+D
Sbjct: 497 FSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD 556
Query: 1162 K 1162
Sbjct: 557 N 557
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 301 bits (772), Expect = 8e-95
Identities = 112/240 (46%), Positives = 148/240 (61%), Gaps = 48/240 (20%)
Query: 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLL 673
+ +++L Y++ K QLL++++G ++PG LTALMG SGAGKTTLL
Sbjct: 1 GSVLTWKNLNYTVPVKGG----------KRQLLNNISGYVKPGTLTALMGESGAGKTTLL 50
Query: 674 DVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA 733
DVLAGRKT+G GEI +NG P + F R +GY EQ D+HSP++T+ E+L FSA LR
Sbjct: 51 DVLAGRKTAGVITGEILINGRPL-DKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-- 107
Query: 734 PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFM 793
GLS EQRKRLTIGVEL A PSI+F+
Sbjct: 108 -----------------------------------GLSVEQRKRLTIGVELAAKPSILFL 132
Query: 794 DEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
DEPT+GLD++AA ++R +K +AD+G+ I+CTIHQPS IFE FD L+LLK GG+ +Y G
Sbjct: 133 DEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 309 bits (794), Expect = 5e-87
Identities = 114/459 (24%), Positives = 203/459 (44%), Gaps = 63/459 (13%)
Query: 23 VTGEVSYNGYKLEEFVPQK--LSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLE 80
V G ++Y+G EE Y ++ D+H P +TV ETLDF+ C+ +R D +
Sbjct: 118 VEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGV-- 175
Query: 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGIS 140
REE A+ I D + GL +T VG+ RG+S
Sbjct: 176 --SREEYAKHI----------------------ADVYMATYGLSHTRNTKVGNDFVRGVS 211
Query: 141 GGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQP 200
GG+++R++ E +G K D T GLD +T+ + + L+ A+I D T L+++ Q
Sbjct: 212 GGERKRVSIA-EASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQC 270
Query: 201 SPETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCPDRKAV------ISRKDQAQY 254
S + + LFD +I++ EG +Y GP + ++FE GF+CPDR+ ++ + Q
Sbjct: 271 SQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQI 330
Query: 255 W--FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESK--------------- 297
+ ++P + F ++ SP +L +++ + +
Sbjct: 331 KPGYEKKVPR---TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQS 387
Query: 298 KSSVSFAVFSLSRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEV 357
K + + +++S K C++R L K N LF II+A + ++F
Sbjct: 388 KRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT 447
Query: 358 DVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKV 417
F+ G+LF+ ++ + EI E + K ++ LY A I + I ++
Sbjct: 448 SDFY--SRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEI 505
Query: 418 PLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCI 456
P ++ES+V+ + Y+++ F R+ F Y I
Sbjct: 506 PFKIIESVVFNIILYFMVNFRRTAGRF------FFYLLI 538
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 241 bits (618), Expect = 2e-73
Identities = 97/240 (40%), Positives = 142/240 (59%), Gaps = 46/240 (19%)
Query: 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLL 673
+T+ F++L ++ + QLL +V+G +PG LTA+MG SGAGK+TLL
Sbjct: 1 GVTLSFRNLTVTVKSSPS--------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLL 52
Query: 674 DVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA 733
+ LAGR+T GE+ +NG P + +F ++ GY Q DI P +T+ E+L F+A LR
Sbjct: 53 NALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-- 110
Query: 734 PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFM 793
GLS +RKR++I +ELV+NPS++F+
Sbjct: 111 -----------------------------------GLSGGERKRVSIALELVSNPSLLFL 135
Query: 794 DEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
DEPT+GLD+ +A VM ++ +ADTGRTI+C+IHQPS +IFE FD+L+LL + GR+IY G
Sbjct: 136 DEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLL-SQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 220 bits (563), Expect = 9e-61
Identities = 160/584 (27%), Positives = 280/584 (47%), Gaps = 60/584 (10%)
Query: 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKL-----------------QLLDDVTGTLRPG 656
PIT+ F D+ Y + E + + ++ +L+ VTG PG
Sbjct: 37 PITLKFMDVCYRVK--FENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPG 94
Query: 657 VLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSP 716
+ A++G SG+GK+TLL+ LAGR F G I N K + ++ +G+ Q DI P
Sbjct: 95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNR-KPTKQILKRTGFVTQDDILYP 153
Query: 717 HITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776
H+T+ E+L F + LRL + + K V+ + L + +++G + G+S +RK
Sbjct: 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERK 213
Query: 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFES 836
R++I E++ NPS++ +DEPT+GLDA AA ++ + ++A G+TIV ++HQPS +++
Sbjct: 214 RVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQM 273
Query: 837 FDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTS------ 890
FD +++L + GR ++ G S + YFE + P NPA ++L++ +
Sbjct: 274 FDSVLVL-SEGRCLFFGKG----SDAMAYFESVGFSPSF--PMNPADFLLDLANGVCQTD 326
Query: 891 ---------------ASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTT 935
AS L E S + N V ST + D
Sbjct: 327 GVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSD----- 381
Query: 936 RFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLF 995
R S + W S L ++ L + S+N +R+ IAA+ L GL++W+ ++ +D+
Sbjct: 382 RISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWH-----SDFRDVQ 436
Query: 996 NILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLI 1055
+ LG L+ IF G +++ ER + +E+++GMY+ +Y A++ ++P LI
Sbjct: 437 DRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELI 496
Query: 1056 QAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAF 1115
+++ +TY M G + ++ LGL L A + AST+ +
Sbjct: 497 LPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVT 556
Query: 1116 YTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGD 1159
+ L GF + ++P W+ Y+S T ++ L+ QYG+
Sbjct: 557 MLAFVLTGGFYV--HKLPSCMAWIKYISTTFYSYRLLINVQYGE 598
|
Length = 659 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 1e-59
Identities = 146/590 (24%), Positives = 263/590 (44%), Gaps = 72/590 (12%)
Query: 610 LPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGK 669
+ +T F+ L+ DT +L + G ++PG LT ++G G+G
Sbjct: 53 ALLKILTRGFRKLKKFRDTK------------TFDILKPMDGLIKPGELTVVLGRPGSGC 100
Query: 670 TTLLDVLAGRKTSGCFK---GEIKVNGYPK--IQETFVRVSGYCEQTDIHSPHITIEESL 724
+TLL +A T G G I +G I++ + Y +TD+H PH+T+ E+L
Sbjct: 101 STLLKTIAS-NTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETL 159
Query: 725 FFSAWLRLAPQ--INSKTKADCVNHV----LKTIELDGIKESLVGIPGVSGLSTEQRKRL 778
F+A + PQ + ++ + H+ + T L + + VG V G+S +RKR+
Sbjct: 160 DFAARCK-TPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRV 218
Query: 779 TIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESF 837
+I + I D T GLD+ A +RA+K A+ T + I+Q S D +E F
Sbjct: 219 SIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELF 278
Query: 838 DELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSASTE--- 894
D++I+L G IY GP + + +YFE + R A ++ +TS +
Sbjct: 279 DKVIVLYE-GYQIYFGP----ADKAKQYFEKMGFKCPDRQ--TTADFLTSLTSPAERQIK 331
Query: 895 ------------------------AELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARD 930
A+L + + Y D + KE R+ + + R
Sbjct: 332 PGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDE-YLDRCSESDTKEAYRESHVAKQSKRT 390
Query: 931 LHF---TTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKE 987
T FS Q K CL + L PS+ L + I + + +F+N K
Sbjct: 391 RPSSPYTVSFSM----QVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK- 445
Query: 988 INNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVT 1047
N D ++ G+L+ + +F + + + R ++ + + +Y P A A A +
Sbjct: 446 --NTSDFYSRGGALFFAILF-NAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASII 502
Query: 1048 IEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTV 1107
EIP+ +I++ ++ II Y M+ F +A + F+ +F ++ S+L + A++ ++
Sbjct: 503 SEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSE 562
Query: 1108 ASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQY 1157
A T + S++ GF IP+P + W W+YY++P ++ E L+ +++
Sbjct: 563 AMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEF 612
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 7e-50
Identities = 74/216 (34%), Positives = 127/216 (58%), Gaps = 12/216 (5%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGYPKIQET 700
++L+DV+ + G + A++G SG+GKTTLLD ++GR G G+I NG P+ +
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE- 759
F + Y Q DI P +T+ E+L ++A LRL + + + K +E +++
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRK-------KRVEDVLLRDL 131
Query: 760 --SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817
+ +G V G+S +R+R++I V+L+ +P ++ +DEPT+GLD+ A ++ + +A
Sbjct: 132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
R ++ TIHQP D+F FD ++LL + G I+YSG
Sbjct: 192 RNRIVILTIHQPRSDLFRLFDRILLL-SSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 2e-49
Identities = 65/215 (30%), Positives = 113/215 (52%), Gaps = 7/215 (3%)
Query: 944 QFKSCLWKQHLSYWRTPSYN-LMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLY 1002
Q K+ L ++ L WR PS L R++ + + +FG +F N ++ N G L+
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGN----LDTSLGGLNRPGLLF 57
Query: 1003 ASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVI 1062
S +F + + P ER V+ RE ++ +YSP AY A++ +E+P L+QA ++++
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 1063 ITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLF 1122
I Y M+G S + F + + ++ S LGL + AL+P+ AS + L
Sbjct: 118 IVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 1123 AGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQY 1157
+GF IP +P W W+YYL+P ++ +E L +++
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 9e-44
Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 17/218 (7%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP--KI 697
LD V+ + PG + L+G +GAGKTTLL +LAG + TSG EI V GY K
Sbjct: 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG----EILVLGYDVVKE 72
Query: 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
R GY Q P +T+ E+L F A L + ++ + + +L+ L+
Sbjct: 73 PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE---ELLELFGLEDK 129
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817
V LS ++RL+I + L+ +P ++ +DEPT+GLD + + ++ +A
Sbjct: 130 ANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAK 184
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855
G + + E D +I+L G+II G
Sbjct: 185 EGGVTILLSTHILEEAEELCDRVIILN-DGKIIAEGTP 221
|
Length = 293 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 8e-42
Identities = 147/597 (24%), Positives = 237/597 (39%), Gaps = 124/597 (20%)
Query: 22 LVTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLEL 81
+G V NG ++ + +SAYV Q DL IP +TVRE L F + L +
Sbjct: 80 KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAH-----------LRM 128
Query: 82 SGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIR-RGIS 140
K R+ + LQ LGL CA+T +G R +G+S
Sbjct: 129 P--------------RRVTKKEKRERVDEVLQA------LGLRKCANTRIGVPGRVKGLS 168
Query: 141 GGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQP 200
GG+++RL E+L P +F D+ T+GLD ++ +V L+ LA TI+ ++ QP
Sbjct: 169 GGERKRLAFASELLTDPP-LLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQP 226
Query: 201 SPETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRCP----------DRKAVISRKD 250
S E F LFD IILMAEG++ Y G + + FF G CP AVI +
Sbjct: 227 SSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE 286
Query: 251 QAQYWFHNELPHSFVSVDMFH---EKFKESPFGKKLEEDLSQVYYKSESKKS---SVSFA 304
S + + F S G+ + + + K+ ++
Sbjct: 287 NE-------------SRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGI 333
Query: 305 VFSLSRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGME-VDVFHAN 363
++ S W F A + R L R+ L + IQ ++ A + ++L G+ V + N
Sbjct: 334 GYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN 393
Query: 364 YFMGSLFYTLVILIVDGISE-IPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLV 422
G+LF L + + I + L VF ++ LY AY + TI ++PL ++
Sbjct: 394 ---GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFII 450
Query: 423 ESLVWTSLTYYVIGFSPELWRWVSF----------EKAFVYF--CIESSVDHCAETLKID 470
++TS+TY++IG +++F +F Y C SS
Sbjct: 451 LPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPP- 509
Query: 471 QFMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHW------------------ 512
F + L +G + ++S+++ VYFK + +
Sbjct: 510 ----FVIPFLLFGGFF-----------INSDSIPVYFKWLSYLSWFRYGNEGLLINQWSD 554
Query: 513 -KKILFTNTTI-------GREILKSRGLNFDEYFFWISLGALFGLALVFNFAFALAL 561
I T+ G IL++ L+F ++ L L L F AL
Sbjct: 555 VDNIECTSANTTGPCPSSGEVILET--LSFRNADLYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-41
Identities = 151/560 (26%), Positives = 260/560 (46%), Gaps = 61/560 (10%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGCFKGEIKVNGYPKIQET 700
KL +L D +G ++P +T L+G +GKTTLL LAG+ S GEI NGY ++ E
Sbjct: 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGY-RLNE- 234
Query: 701 FV--RVSGYCEQTDIHSPHITIEESLFFSAWLR-----------LA-----------PQI 736
FV + S Y Q D+H +T++E+L FSA + LA ++
Sbjct: 235 FVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEV 294
Query: 737 NSKTKADCVNHV---------LKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVAN 787
+ KA + V LK + LD K+++VG + G+S Q+KR+T G +V
Sbjct: 295 DLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGP 354
Query: 788 PSIIFMDEPTTGLDARAA-AIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846
+FMDE +TGLD+ IV + V T T++ ++ QP+ + F+ FD++ILL +
Sbjct: 355 TKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILL-SE 413
Query: 847 GRIIYSGPLGNHSSRVIEYFEGIP-GVPQIRNNYNPATWMLEVTSASTEAELGLDFSQIY 905
G+I+Y GP + ++E+FE P+ + A ++ EVTS + + D ++ Y
Sbjct: 414 GQIVYQGPRDH----ILEFFESCGFKCPERKGT---ADFLQEVTSKKDQEQYWADRNKPY 466
Query: 906 ------EDSLLYEN-------NKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSCLWKQ 952
E + +++ EL S L F +++S K+C K+
Sbjct: 467 RYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVF-SKYSVPKMELLKACWDKE 525
Query: 953 HLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMN 1012
L R + + + I + + +F N++D +G+L S I + N
Sbjct: 526 WLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMI-INMFN 584
Query: 1013 CSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYA 1072
+ L V Y+++ + P + + IP +I++ ++V+ITY IGF
Sbjct: 585 GFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAP 644
Query: 1073 SAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQI 1132
A + F +F + + L+ ++ + +A+T + L GF++P+ +I
Sbjct: 645 EASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEI 704
Query: 1133 PKWWIWLYYLSPTSWTLEGL 1152
P WW W Y++SP S+ L
Sbjct: 705 PNWWEWAYWVSPLSYGFNAL 724
|
Length = 1470 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 4e-37
Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 36/218 (16%)
Query: 640 AHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGCFKGEIKVNGYP--K 696
K+ +L D +G ++PG + ++G G+G +TLL LA R + + +G+I NG P +
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76
Query: 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
E + Y + D+H P +T+ E+L F+ C +
Sbjct: 77 FAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL--------------RCKGNEF------- 115
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
V G+S +RKR++I LV+ S++ D T GLD+ A +++ ++ +A
Sbjct: 116 ----------VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMA 165
Query: 817 D-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
D T +++Q S +I++ FD++++L GR IY G
Sbjct: 166 DVLKTTTFVSLYQASDEIYDLFDKVLVLY-EGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 4e-33
Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 132 GDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDA 191
G+ RGISGG+++R++ E LV + D T GLD ST+ +I+ C++ +A +
Sbjct: 112 GNEFVRGISGGERKRVSIA-EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT 170
Query: 192 TILISLLQPSPETFHLFDDIILMAEGKILYHG 223
T +SL Q S E + LFD ++++ EG+ +Y+G
Sbjct: 171 TTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-31
Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 37/204 (18%)
Query: 20 TGLVTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79
G +G++ +NG + QK AYV Q D+ +P +TVRETL
Sbjct: 60 GGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETL----------------- 102
Query: 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGI 139
TY + R + ++ + L A T +G + +GI
Sbjct: 103 ------------------TYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGI 144
Query: 140 SGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQ 199
SGG++RR++ ++L P K + +D+ T+GLD T+ +V+ L LA + +++++ Q
Sbjct: 145 SGGERRRVSIAVQLLWDP-KVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQ 202
Query: 200 PSPETFHLFDDIILMAEGKILYHG 223
P + F LFD I+L++ G+I+Y G
Sbjct: 203 PRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 5e-28
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
+DD++ + G + L+G +GAGKTT L +L G R TSG +NGY I+
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYS-IRTDRKA 72
Query: 704 VS---GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
GYC Q D +T+ E L F A L+ + + V +L+ + L
Sbjct: 73 ARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANK 129
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820
LS +++L++ + L+ PS++ +DEPT+GLD + + + V GR
Sbjct: 130 RAR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGR 183
Query: 821 TIVCTIH 827
+I+ T H
Sbjct: 184 SIILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 58/214 (27%), Positives = 106/214 (49%), Gaps = 21/214 (9%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L+DV+ ++PG A++G +GAGK+TLL + G + TSG I+V G P +++ R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG----SIRVFGKP-LEKERKR 69
Query: 704 VSGYCEQT---DIHSPHITIEESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIKE 759
+ GY Q D P I++ + + + + SK V+ L+ + L + +
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD 127
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG 819
+G LS Q++R+ + LV +P ++ +DEP G+D + + ++ + G
Sbjct: 128 RQIG-----ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182
Query: 820 RTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
TI+ H + + E FD ++LL ++ SG
Sbjct: 183 MTILVVTHDLGL-VLEYFDRVLLLN--RTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 5e-27
Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 18/215 (8%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYP--KIQ 698
K + LD V+ TL PG+ L+G +GAGKTTL+ +LA S G I+++G K
Sbjct: 12 KKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQP 67
Query: 699 ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK 758
+ R GY Q P+ T+ E L + AWL+ I SK V+ VL+ + L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
+ +G LS R+R+ I LV +PSI+ +DEPT GLD I R + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
R ++ + H D+ +++ +L G++++ G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 6e-25
Identities = 35/87 (40%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 137 RGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILIS 196
RG+SGG+++R++ E++ P +F+D+ T+GLD S++ Q+++ L+ LA T TI+ S
Sbjct: 110 RGLSGGERKRVSIALELVSNP-SLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICS 167
Query: 197 LLQPSPETFHLFDDIILMAEGKILYHG 223
+ QPS E F LFD ++L+++G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-25
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQ 698
++LDD++ L G + AL G +GAGKTTL +LAG +++ G I +NG P
Sbjct: 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSILLNGKPIKA 66
Query: 699 ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK 758
+ + GY Q + +S+ L L + VLK ++L +K
Sbjct: 67 KERRKSIGYVMQ---DVDYQLFTDSVR--EELLLGLKELDAGNEQ-AETVLKDLDLYALK 120
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
E P LS Q++RL I L++ ++ DEPT+GLD + V ++ +A
Sbjct: 121 ERH---P--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTG 846
G+ ++ H + + D ++LL G
Sbjct: 176 GKAVIVITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 9e-25
Identities = 106/453 (23%), Positives = 190/453 (41%), Gaps = 66/453 (14%)
Query: 20 TGLVT-GEVSYNGYKLEE-FVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77
TG++T G+ NG L+ F Q+ YV Q DLH+P TVRE+L FS Y +
Sbjct: 815 TGVITGGDRLVNGRPLDSSF--QRSIGYVQQQDLHLPTSTVRESLRFSAYLR-------- 864
Query: 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRR 137
+ SV + +K + +K+L ++ AD +VG
Sbjct: 865 -----------------------QPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GE 900
Query: 138 GISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL 197
G++ Q++RLT G E++ P +F+D+ T+GLD T++ I ++ LA IL ++
Sbjct: 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTI 959
Query: 198 LQPSPETFHLFDDIILMAEG-KILYHGP----RESVLEFFESCGFR-CPDRKAVISRKDQ 251
QPS F FD ++L+ +G + +Y G +++ +FE G CP+ +
Sbjct: 960 HQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPE------DANP 1013
Query: 252 AQYWFH--NELPHSFVSVDMFHEKFKESPFGK-------KLEEDLSQVYYKSESKKSSVS 302
A++ P + + D +HE ++ S + +LE +LS K+E +
Sbjct: 1014 AEWMLEVIGAAPGAHANQD-YHEVWRNSSEYQAVKNELDRLEAELS----KAEDDNDPDA 1068
Query: 303 FAVFSLSRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHA 362
+ ++ S W FK + R R K I A F + G +
Sbjct: 1069 LSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQN 1128
Query: 363 NYFMGSLFYTLVILIVDGISEIPMSLE-RLAVFYKQKEMCLYPAWAYVIPATILKVPLSL 421
M ++F V+ +P + R +++ + A++ +++P +L
Sbjct: 1129 Q--MFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNL 1186
Query: 422 VESLVWTSLTYYVIGFSPELWRWVSFEKAFVYF 454
V ++ + YY +GF + + V F
Sbjct: 1187 VAGTIFFFIWYYPVGFYWNASKTGQVHERGVLF 1219
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 23/211 (10%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP---KIQET 700
LDD++ T++ G ++G +G+GK+TLL +L G GE+ V+G +
Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKE 72
Query: 701 FVRVSGYCEQTDIHSP-----HITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD 755
R G Q +P T+EE + F P+ + + V L+ + L+
Sbjct: 73 LRRKVGLVFQ----NPDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLE 125
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
G+++ LS Q++R+ I L +P I+ +DEPT GLD ++ +K +
Sbjct: 126 GLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180
Query: 816 ADTGRTIVCTIHQPSIDIFESFDELILLKTG 846
G+TI+ H + E D +I+L+ G
Sbjct: 181 KAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 8e-24
Identities = 65/214 (30%), Positives = 112/214 (52%), Gaps = 34/214 (15%)
Query: 24 TGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSG 83
TG + N K + + K + +V+Q D+ P +TVRETL F + LL L
Sbjct: 124 TGTILANNRKPTKQI-LKRTGFVTQDDILYPHLTVRETLVFCS-----------LLRLP- 170
Query: 84 REEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQ 143
S+ + +K L + + LGL C +T++G++ RGISGG+
Sbjct: 171 -------------------KSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGE 211
Query: 144 KRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPE 203
++R++ EML+ P + +D+ T+GLD + ++++V L LA TI+ S+ QPS
Sbjct: 212 RKRVSIAHEMLINP-SLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSR 269
Query: 204 TFHLFDDIILMAEGKILYHGPRESVLEFFESCGF 237
+ +FD +++++EG+ L+ G + +FES GF
Sbjct: 270 VYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGF 303
|
Length = 659 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 17/216 (7%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYPKIQETFV 702
+L+D++ ++ G +TAL+G +GAGK+TLL + G K S GEIK+ G P +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 703 RVSGYCEQT---DIHSPHITIEESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIK 758
GY Q D P IT+++ + + + + +K + V+ L+ + ++ ++
Sbjct: 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR 133
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
+ +G LS Q++R+ + L NP ++ +DEP TG+D + +K +
Sbjct: 134 DRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
G+T++ H + + FD +I L +I SGP
Sbjct: 189 GKTVLMVTHDLGL-VMAYFDRVICLN--RHLIASGP 221
|
Length = 254 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-23
Identities = 114/457 (24%), Positives = 213/457 (46%), Gaps = 71/457 (15%)
Query: 21 GLVTGEVSYNGY--KLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78
G + G++ +G+ K E F ++S Y Q D+H P++TVRE+L +S + + L
Sbjct: 933 GYIEGDIRISGFPKKQETFA--RISGYCEQNDIHSPQVTVRESLIYSAFLR--------L 982
Query: 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRG 138
+ +EE+ +D M+ + LK D +VG G
Sbjct: 983 PKEVSKEEKMMF-----VDEVMELVELDNLK------------------DAIVGLPGVTG 1019
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 198
+S Q++RLT E++ P +FMD+ T+GLD + ++ +++ T T++ ++
Sbjct: 1020 LSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 1077
Query: 199 QPSPETFHLFDDIILMAE-GKILYHGP--RES--VLEFFESCGFRCPDRKAVISRKDQAQ 253
QPS + F FD+++LM G+++Y GP R S ++E+FE+ P I K
Sbjct: 1078 QPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIP-GVPK----IKEKYNPA 1132
Query: 254 YWFHNELPHSFVSVDM-----FHEKFKESPF---GKKLEEDLSQVYYKSESKKSSVSFAV 305
W L S ++ ++ F E +K S K L ++LS S + FA
Sbjct: 1133 TWM---LEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELST----PPPGASDLYFAT 1185
Query: 306 -FSLSRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHA-N 363
+S S W FK+C+ ++ R+ L + + A M T+F + G + +
Sbjct: 1186 QYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLT 1245
Query: 364 YFMGSLFYTLVILIVDGISEI-PMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLV 422
+G+++ ++ + ++ S + PM VFY+++ +Y A Y I + ++P L+
Sbjct: 1246 MVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLI 1305
Query: 423 ESLVWTSLTYYVIGF----SPELW-RWVSFEKAFVYF 454
++ +T + Y ++ F + W ++SF +F+YF
Sbjct: 1306 QTTYYTLIVYAMVAFEWTAAKFFWFYFISF-FSFLYF 1341
|
Length = 1470 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-23
Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 512 WKKIL-FTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSS 570
W K +N T+G +LKSRGL + Y++WI +GAL G ++FN F LAL++L P G S
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 571 PAMIS 575
A++S
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 7e-23
Identities = 63/225 (28%), Positives = 96/225 (42%), Gaps = 46/225 (20%)
Query: 20 TGLV---TGEVSYNGYKLEEFVPQ--KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74
GL+ +GE+ GY + + + + YV Q PE+TVRE L+F G
Sbjct: 52 AGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG---- 107
Query: 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDA 134
LS E E RI + L++ GL+ A+ V
Sbjct: 108 ------LSKEEAEERI------------------------EELLELFGLEDKANKKV--- 134
Query: 135 IRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL 194
R +SGG K+RL+ +L P + + +D+ T+GLD + +I L+ LA TIL
Sbjct: 135 --RTLSGGMKQRLSIALALLHDP-ELLILDEPTSGLDPESRREIWELLRELAKEGGVTIL 191
Query: 195 ISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFRC 239
+S E L D +I++ +GKI+ G E + E F G
Sbjct: 192 LS-THILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIE 235
|
Length = 293 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 92.8 bits (232), Expect = 1e-21
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 54/208 (25%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP--KIQETF 701
LDD++ T+ G + L+G +GAGKTTL+ ++ G + SG EIKV G K E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
R GY + ++T+ E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821
G ++RL + L+ +P ++ +DEPT+GLD + ++ + G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 822 IVCTIHQPSIDIFESFDELILLKTGGRI 849
I+ + H + D + +L GRI
Sbjct: 148 ILLSSHILE-EAERLCDRVAILN-NGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 9e-21
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 46/212 (21%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYPKIQETFV 702
+LDD++ ++ G + ++G +GAGK+TLL LAG K S GEI ++G
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDG--------- 60
Query: 703 RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLV 762
D+ ++ K A + +V + +EL G+ L
Sbjct: 61 --------KDLA--------------------SLSPKELARKIAYVPQALELLGL-AHLA 91
Query: 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRT 821
P + LS +R+R+ + L P I+ +DEPT+ LD ++ ++ +A G+T
Sbjct: 92 DRP-FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKT 150
Query: 822 IVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+V +H ++ D +ILLK GRI+ G
Sbjct: 151 VVMVLHDLNL-AARYADRVILLK-DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 25/218 (11%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG-----YPK 696
K+Q L V+ ++ G A++G SG+GK+TLL++L G GE++V+G +
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISKLSE 73
Query: 697 IQETFVRVS--GYCEQTDIHS--PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI 752
+ R G+ Q+ + P +T E++ L + K + + +
Sbjct: 74 KELAAFRRRHIGFVFQS--FNLLPDLTALENV------ELPLLLAGVPKKERRERAEELL 125
Query: 753 ELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV 812
E G+ + L P S LS Q++R+ I L +P II DEPT LD+ VM +
Sbjct: 126 ERVGLGDRLNHYP--SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183
Query: 813 KNVA-DTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849
+ + + G TIV H P ++ E D +I L+ G+I
Sbjct: 184 RELNKEAGTTIVVVTHDP--ELAEYADRIIELR-DGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 7e-20
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 49/211 (23%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPK 696
+ +L+DV+ + G + AL+G SG+GK+TLL +AG SG GE +
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE-DLTDLED 69
Query: 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
R G Q PH+T+ E++
Sbjct: 70 ELPPLRRRIGMVFQDFALFPHLTVLENIAL------------------------------ 99
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
GLS Q++R+ + L +P ++ +DEPT+ LD V +K++
Sbjct: 100 ------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQ 147
Query: 817 DT-GRTIVCTIHQPSIDIFESFDELILLKTG 846
G T+V H + D +++L+ G
Sbjct: 148 AQLGITVVLVTHDLD-EAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 4e-19
Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 34/225 (15%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYPKIQET--- 700
+LDD++ ++ G +T ++G +G+GK+TLL LAG K GE+ ++G I
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKD-IASLSPK 72
Query: 701 -FVRVSGYCEQTDIHSPHITIEE---------SLFFSAWLRLAPQINSKTKADCVNHVLK 750
+ Y Q+ +T+ E F SK + V L+
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRP--------SKEDEEIVEEALE 124
Query: 751 TIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
+ L+ + + V LS +R+R+ I L I+ +DEPT+ LD V+
Sbjct: 125 LLGLEHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLE 179
Query: 811 AVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
++++ G T+V +H ++ + D LILLK G+I+ G
Sbjct: 180 LLRDLNREKGLTVVMVLHDLNLAARYA-DHLILLK-DGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 4e-19
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 42/201 (20%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYP------ 695
LDDV+ ++RPG + L+G +GAGKTTL ++++G R TSG F GE + G P
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE-DITGLPPHEIAR 74
Query: 696 -KIQETFVRVSGYCEQTDIHSPHITIEE------------SLFFSAWLRLAPQINSKTKA 742
I TF + P +T+ E L + R + +
Sbjct: 75 LGIGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARER--- 123
Query: 743 DCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA 802
+L+ + L + + G LS Q++RL I L +P ++ +DEP GL+
Sbjct: 124 --AEELLERVGLADLADRPAG-----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 803 RAAAIVMRAVKNVADTGRTIV 823
+ ++ + + G T++
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 8e-19
Identities = 62/221 (28%), Positives = 105/221 (47%), Gaps = 30/221 (13%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP-------K 696
L D+ T++ G LTAL+G SGAGK+TLL++L G +GEI+VNG
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT--QGEIRVNGIDLRDLSPEA 392
Query: 697 IQETFVRVSGYCEQTDIHSPHI---TIEESLFFSAWLRLAPQINSKTKADCVNHVL-KTI 752
++ VS +P++ TI E++ + +I + + + K
Sbjct: 393 WRKQISWVS--------QNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPD 444
Query: 753 ELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV 812
LD + G +GLS Q +RL + L++ S++ +DEPT LDA I+++A+
Sbjct: 445 GLDTVIGE-----GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL 499
Query: 813 KNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+ +A +V T H+ D +++L GR++ G
Sbjct: 500 QELAKQKTVLVIT-HRLE--DAADADRIVVLDN-GRLVEQG 536
|
Length = 559 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 9e-19
Identities = 58/217 (26%), Positives = 108/217 (49%), Gaps = 20/217 (9%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQE 699
K+Q + DV+ G +T L+G +GAGKTTLL ++A SG + ++G +++
Sbjct: 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGK----VTIDGVDTVRD 69
Query: 700 -TFVR--VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
+FVR + + +++ +T E+L + A L ++ K + + K ++L
Sbjct: 70 PSFVRRKIGVLFGERGLYA-RLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLE 125
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
+ VG ST ++++ I LV +PSI+ +DEPT+GLD R +K +
Sbjct: 126 YLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+ GR ++ + H ++ D +I+L G ++ G
Sbjct: 181 NEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEG 215
|
Length = 245 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 9e-19
Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 27/219 (12%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNG-----Y 694
K++ L DV + G A++G SG+GK+TLL++L G + TSG E+ +NG
Sbjct: 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG----EVLINGKDLTKL 72
Query: 695 PKIQETFVRVS--GYCEQTDIHS--PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLK 750
+ + +R G+ Q + P +T+ E++ L I K+ +
Sbjct: 73 SEKELAKLRRKKIGFVFQN--FNLLPDLTVLENV------ELPLLIAGKSAGRRKRAAEE 124
Query: 751 TIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
+E+ G+++ L+ S LS Q++R+ I L+ NP II DEPT LD++ A V+
Sbjct: 125 LLEVLGLEDRLLKKK-PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE 183
Query: 811 AVKNVA-DTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848
++ + + G+TI+ H P ++ + D +I LK G
Sbjct: 184 LLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 23/217 (10%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNG--YPK 696
K ++LDD++ ++ G + +G +GAGKTT + ++ G + SG EI +G Y K
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG----EITFDGKSYQK 66
Query: 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
E R+ E + P++T E+L A I K ++ VL + L
Sbjct: 67 NIEALRRIGALIEAPGFY-PNLTARENLRLLA---RLLGIRKKR----IDEVLDVVGLKD 118
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
+ V G S ++RL I + L+ NP ++ +DEPT GLD + + ++
Sbjct: 119 SAKKKVK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR 173
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
D G T++ + H S +I + D + ++ G++I G
Sbjct: 174 DQGITVLISSHLLS-EIQKVADRIGIIN-KGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQET- 700
L DV+ + G L+G +G+GK+TLL +L G + TSG E+ V+G E
Sbjct: 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG----EVLVDGLDTSSEKS 73
Query: 701 ---FVRVSGYCEQTDIHSPH-----ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI 752
+ G Q +P T+E+ + F + + + V L+ +
Sbjct: 74 LLELRQKVGLVFQ----NPDDQLFGPTVEDEVAFGL---ENLGLPREEIEERVAEALELV 126
Query: 753 ELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV 812
L+ + + LS Q++R+ I L P I+ +DEPT GLD + ++ +
Sbjct: 127 GLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181
Query: 813 KN-VADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
K + G+TI+ H + E D +++L G+I+ G
Sbjct: 182 KKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLD-DGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 5e-18
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 33/227 (14%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L DV+ ++ PG AL+G SGAGK+TLL L G TSG + ++G +
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG----SVLIDGTDINKLKGKA 72
Query: 704 VSGYCEQTD-IHSPHITIEESL--------------FFSAWLRLAPQINSKTKADCVNHV 748
+ Q I IE + + L P+ + + V
Sbjct: 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV 132
Query: 749 LKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIV 808
G+ + LS Q++R+ I L+ P +I DEP LD ++ V
Sbjct: 133 -------GLLDKA--YQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQV 183
Query: 809 MRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
M +K + G T++ ++HQ + E D ++ LK GRI++ GP
Sbjct: 184 MDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 36/220 (16%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNG-----YPK 696
+ LDD++ T+ PG AL+G SG GKTTLL ++AG R S GEI ++G P
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS----GEILIDGRDVTGVPP 69
Query: 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
+ R G Q PH+T+ E++ F ++ KA+ V + +E
Sbjct: 70 ER----RNIGMVFQDYALFPHLTVAENIAF------GLKLRGVPKAEIRARVRELLE--- 116
Query: 757 IKESLVGIPG-----VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
LVG+ G LS Q++R+ + L PS++ +DEP + LDA+ +
Sbjct: 117 ----LVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE 172
Query: 812 VKNV-ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850
+K + + G T + H + D + ++ GRI+
Sbjct: 173 LKELQRELGITTIYVTHDQE-EALALADRIAVMN-EGRIV 210
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 30/220 (13%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETF-- 701
Q +D V+ T++PG +T L+G +GAGKTT L +LAG G V+G+ ++E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEA 76
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
R G+ + +T E+L + A L + LK EL E L
Sbjct: 77 RRRLGFVSDSTGLYDRLTARENLEYFAGL----------------YGLKGDELTARLEEL 120
Query: 762 VGIPG--------VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
G V G ST R+++ I LV +P ++ +DEPTTGLD A + ++
Sbjct: 121 ADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIR 180
Query: 814 NVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+ G+ I+ + H ++ D +++L GR++Y G
Sbjct: 181 QLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-17
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 751 TIELDGIKESLVGIPG-------VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
I +DG + + + V LS QR+R+ + L+ NP ++ +DEPT+GLD
Sbjct: 55 EILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114
Query: 804 AAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846
+ ++ ++ +A+ GRT++ H P + D +I+LK G
Sbjct: 115 SRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 4e-17
Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 25/220 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETF-V 702
+ V+ +R G + L+G +GAGKTT + +L + TSG V G+ ++E V
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 703 RVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
R G Q +T E+L+ A L P + + D +L + L + L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERID---ELLDFVGLLEAADRL 128
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN-VADTGR 820
V S R+RL I LV P ++F+DEPT GLD + A V ++ + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 821 TIVCTIHQPSIDIFESFDEL---ILLKTGGRIIYSGPLGN 857
TI+ T H E ++L + + GRII G
Sbjct: 184 TILLTTHY-----MEEAEQLCDRVAIIDHGRIIAEGTPEE 218
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 5e-17
Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 25/220 (11%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGC--FKGEIKVNGYPKIQET 700
++D V T PG LT L+G +G+GK+TLL +LAG R +G G ++G +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGV-DLHGLSRRARA 74
Query: 701 FVRVSGYCEQTDIHSPHITIEESL------FFSAWLRLAPQINSKTKADCVNHVLKTIEL 754
R EQ + +T+ + + S W +S A V+ L EL
Sbjct: 75 --RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW-----AGDSPHDAAVVDRALARTEL 127
Query: 755 DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 814
+ + +S LS +R+R+ + L P ++ +DEPT LD RA + V+
Sbjct: 128 SHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182
Query: 815 VADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+A TG T+V +H +++ S+ + +++ GGR++ +GP
Sbjct: 183 LAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-16
Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI---QETFV 702
L V+ T+ PG AL+G SGAGK+TLL++L G +G I VNG P +++
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADADADSWR 395
Query: 703 RVSGYCEQTDIHSPHI---TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
+ Q P + TI E++ + +I + ++ + + G+ +
Sbjct: 396 DQIAWVPQH----PFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALP-QGL-D 449
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG 819
+ +G G +GLS Q +RL + + + ++ +DEPT LDA A V+ A++ +A G
Sbjct: 450 TPIG-EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-G 507
Query: 820 RTIVCTIHQPSI 831
RT++ H+ ++
Sbjct: 508 RTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 2e-16
Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 36/200 (18%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYP---KIQETF 701
LD V+ L PG A++G SG+GK+TLL LAG GE+ ++G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQ---GEVTLDGVPVSSLDQDEV 407
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVN-HVLKTIELDGIKES 760
R C Q D H T+ E+ LRLA + D + + +E G+ +
Sbjct: 408 RRRVSVCAQ-DAHLFDTTVREN------LRLA-------RPDATDEELWAALERVGLADW 453
Query: 761 LVGIPGVSGLSTE-----------QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
L +P GL T +R+RL + L+A+ I+ +DEPT LDA A ++
Sbjct: 454 LRALPD--GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELL 511
Query: 810 RAVKNVADTGRTIVCTIHQP 829
+ A +GRT+V H
Sbjct: 512 EDL-LAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 77.4 bits (192), Expect = 2e-16
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 62/210 (29%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCF----KGEIKVNGYP--KI 697
+L DV+ T++PG A++G SG+GK+TLL +L GEI ++G +
Sbjct: 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLR------LYDPTSGEILIDGVDLRDL 69
Query: 698 QETFVR-VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
+R Y Q + FS
Sbjct: 70 DLESLRKNIAYVPQ-----------DPFLFS---------------------------GT 91
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
I+E++ LS QR+R+ I L+ +P I+ +DE T+ LD A+++ A++ +A
Sbjct: 92 IRENI--------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA 143
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTG 846
G+T++ H+ S D +I+L G
Sbjct: 144 K-GKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 3e-16
Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 39/226 (17%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP--KIQETFV 702
+L+D++ + PG A++G SG+GK+TLL +L G G I ++G I +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ--GRILLDGVDLNDIDLASL 545
Query: 703 RVS-GYCEQTDIHSPHITIEESLFFSAWLR----LAPQINSKTKADCVNHVLKTIELDGI 757
R GY Q + FS +R L + +++ +L G
Sbjct: 546 RRQVGYVLQ-----------DPFLFSGSIRENIALGNPEATD------EEIIEAAQLAGA 588
Query: 758 KESLVGIP---------GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIV 808
E + +P G + LS QR+RL + L++ P I+ +DE T+ LD AI+
Sbjct: 589 HEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAII 648
Query: 809 MRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
++ + GRT++ H+ S S D +I+L G+I+ G
Sbjct: 649 LQNLLQ-ILQGRTVIIIAHRLS--TIRSADRIIVLD-QGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 38/215 (17%)
Query: 655 PGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP------KI----QETFVRV 704
+T + G SGAGK+TLL +AG + G I +NG KI Q+ R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQ---RK 76
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
G Q PH+ + E+L F + ++ V+ +L + LD +
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFGL-----KRKRNREDRISVDELLDLLGLDHLLNR---- 127
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVC 824
+ LS +++R+ + L A P ++ +DEP + LD ++ +K +
Sbjct: 128 -YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK------- 179
Query: 825 TIHQPSIDIFESFDEL------ILLKTGGRIIYSG 853
++ P I + E I++ GR+ Y G
Sbjct: 180 NLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 8e-16
Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 24/224 (10%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQE--TF 701
+D V +R G + +G +GAGKTT + +L R TSG +V GY ++E
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKV 64
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
R G Q +T E+L L P+ ++ +A+ +L+ EL +
Sbjct: 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAE---ELLELFELGEAADRP 121
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821
VG S R+RL I L+ P ++F+DEPTTGLD R + ++ + + G T
Sbjct: 122 VG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 822 IVCTIHQPSIDIFESFDEL---ILLKTGGRIIYSGPLGNHSSRV 862
I+ T H E D+L I + GRII G R+
Sbjct: 177 ILLTTHY-----MEEADKLCDRIAIIDHGRIIAEGTPEELKRRL 215
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 9e-16
Identities = 66/255 (25%), Positives = 114/255 (44%), Gaps = 49/255 (19%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNG--YPKIQE 699
+LD V + G + A++G SG+GK+TLL ++ G R KGEI ++G P++ E
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD----KGEILIDGEDIPQLSE 77
Query: 700 T-----FVRVSGYCEQ-----TDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
R+ G Q + + T+ E++ F LR ++ + V
Sbjct: 78 EELYEIRKRM-GVLFQQGALFSSL-----TVFENVAFP--LREHTKLPESLIRELV---- 125
Query: 750 KTIELDGIKESLVGIPGV------SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
+K LVG+ G S LS RKR+ + + +P ++F+DEPT+GLD
Sbjct: 126 ------LMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 804 AAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG----NH 858
+A ++ ++ + D G T++ H + D + +L G++I G +
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLA-DGKVIAEGTPEELLASD 237
Query: 859 SSRVIEYFEGIPGVP 873
V ++F GI P
Sbjct: 238 DPWVRQFFNGIRDGP 252
|
Length = 263 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 1e-15
Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 56/209 (26%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFV 702
+L +V+ ++ PG A++G SG+GK+TL ++ G R TSG ++++G
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDG--------- 63
Query: 703 RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-DG-IKES 760
DI Q + D V ++ + EL G I E+
Sbjct: 64 --------ADIS--------------------QWDPNELGDHVGYLPQDDELFSGSIAEN 95
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820
+ LS QR+RL + L NP I+ +DEP + LD + +A+ + G
Sbjct: 96 I--------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGA 147
Query: 821 TIVCTIHQPSIDIFESFDELILLKTGGRI 849
T + H+P S D +++L GR+
Sbjct: 148 TRIVIAHRPE--TLASADRILVL-EDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 23/221 (10%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR--KTSGCFKGEIKVNGYP----KIQ 698
+L D++ + PG A++G +GAGKTTLL +L G +SG ++ + G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG----DVTLLGRRFGKGETI 101
Query: 699 ETFVRVSGYC--EQTDIHSPHITIEESLF--FSAWLRLAPQINSKTKADCVNHVLKTIEL 754
+ G E + T+ + + F A + + + + +L+ +
Sbjct: 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGA 161
Query: 755 DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 814
+ + G LS +++R+ I LV +P ++ +DEP GLD A ++ ++
Sbjct: 162 KHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEE 216
Query: 815 VADT--GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+A + ++ H +I F +LLK G ++ G
Sbjct: 217 LAASPGAPALLFVTHHAE-EIPPCFTHRLLLK-EGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-15
Identities = 64/240 (26%), Positives = 101/240 (42%), Gaps = 36/240 (15%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L DV + G L+G SG GK+TLL ++AG TS GEI ++G T +
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS----GEILIDGRDV---TDLP 71
Query: 704 VS----GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADC---VNHVLKTIELDG 756
Q PH+T+ E++ F L+L KA+ V V K + L+
Sbjct: 72 PEKRGIAMVFQNYALYPHMTVYENIAFG--LKLR----GVPKAEIDKRVKEVAKLLGLEH 125
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV--KN 814
+ LS QR+R+ + LV P + +DEP + LDA+ ++MR+ K
Sbjct: 126 LLNRK-----PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKL 179
Query: 815 VADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP----LGNHSSRVIEYFEGIP 870
G T + H ++ D ++++ GRI G ++ + F G P
Sbjct: 180 HERLGTTTIYVTHDQ-VEAMTLADRIVVMN-DGRIQQVGTPLELYERPANLFVAGFIGSP 237
|
Length = 338 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 53/197 (26%), Positives = 97/197 (49%), Gaps = 16/197 (8%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKV-----NGYPK 696
+ Q+L D+ + PG + L G SG+GKTTLL ++ G ++ +G +KV G +
Sbjct: 17 RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASE 74
Query: 697 IQETFVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD 755
+ +R + GY Q +T +++ + L L P ++ + + +L+ +
Sbjct: 75 KELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAV--- 129
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
G+ + L P LS Q++R+ I LV P ++ DEPT LD+++ V+ ++ +
Sbjct: 130 GLGDHLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKL 187
Query: 816 A-DTGRTIVCTIHQPSI 831
A + G TI+ H I
Sbjct: 188 AREQGCTILIVTHDNRI 204
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 2e-15
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 16/192 (8%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG-----YPKIQET 700
LD + ++ G L+G SGAGK+TLL ++ + G I+VNG
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT--SGTIRVNGQDVSDLRGRAIP 74
Query: 701 FVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
++R G Q P + E++ F A ++ + V +EL G+
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAF------ALEVTGVPPREIRKRVPAALELVGLSH 128
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG 819
+P + LS +++R+ I +V +P+I+ DEPT LD +M +K + G
Sbjct: 129 KHRALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 820 RTIVCTIHQPSI 831
T+V H +
Sbjct: 187 TTVVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 3e-15
Identities = 57/236 (24%), Positives = 99/236 (41%), Gaps = 54/236 (22%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP------ 695
+L V +R G + A++G SG+GK+TLL ++ G R SG E+ ++G
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG----EVLIDGEDISGLSE 69
Query: 696 -KIQETFVRVSGYCEQ-----TDIHSPHITIEESLFFSAWLR-----LAPQINSKTKADC 744
++ R+ G Q + T+ E++ F LR +I
Sbjct: 70 AELYRLRRRM-GMLFQSGALFDSL-----TVFENVAF--PLREHTRLSEEEIREI----- 116
Query: 745 VNHVLKTIELDGIKESLVGIPGV-----SGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799
VL+ +E VG+ G + LS +KR+ + L +P ++ DEPT G
Sbjct: 117 ---VLEKLEA-------VGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 800 LDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
LD A+ ++ ++++ G T + H F D + +L G+I+ G
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLY-DGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 5e-15
Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 41/233 (17%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY-------PK 696
Q L ++ + PG A++G SGAGK+TLL + G I + G K
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS--SGSILLEGTDITKLRGKK 73
Query: 697 IQETFVRVSGYCEQTDIHSPHITIEESL--------FFSAWLRLAPQINSKTKADCVNHV 748
+++ R+ + ++ +E L + + L + D
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS------EED----- 122
Query: 749 LKTIELDGIKESLVGIPG-----VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
K L ++ VG+ LS Q++R+ I L P +I DEP LD +
Sbjct: 123 -KERALSALER--VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPK 179
Query: 804 AAAIVMRAVKNVA-DTGRTIVCTIHQPSIDIFESF-DELILLKTGGRIIYSGP 854
+ VM +K + + G T++ +HQ +D+ + + D ++ LK G I++ G
Sbjct: 180 TSKQVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKA-GEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 8e-15
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 11/161 (6%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFV- 702
Q LDDV + G L AL+G SG+GK+TLL ++AG + G I++NG +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARD 71
Query: 703 RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLV 762
R G+ Q H+T+ +++ F +R P+ K + V +L+ ++L+G+ +
Sbjct: 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDRY- 127
Query: 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
P + LS QR+R+ + L P ++ +DEP LDA+
Sbjct: 128 --P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 9e-15
Identities = 66/269 (24%), Positives = 129/269 (47%), Gaps = 28/269 (10%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETF 701
+ +D+++ + PG + L+G +GAGKTT ++ G +GEI NG P QE
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG--LLEPTEGEITWNGGPLSQEIK 71
Query: 702 VRVSGYC-EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
R+ GY E+ ++ P +T+E+ L + A L+ P+ + K L+ +E+ G K
Sbjct: 72 NRI-GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKKLQ---AWLERLEIVGKKTK 126
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820
+ LS ++++ ++ P ++ +DEP +GLD ++ A+ + + G
Sbjct: 127 KI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181
Query: 821 TIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN------------HSSRVIEYFEG 868
TI+ + H+ + E D L++LK G ++Y G + + S +E
Sbjct: 182 TIIFSSHRME-HVEELCDRLLMLKKGQTVLY-GTVEDIRRSFGKKRLVIESDLSLEELAN 239
Query: 869 IPGVPQIRNNYNPATWMLEVTSASTEAEL 897
IPG+ +I + + W +++ + + E+
Sbjct: 240 IPGILKITETKDGS-WRIQIENETVAREI 267
|
Length = 300 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 16/214 (7%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE--TFVR 703
LDDV+ T+RPG AL+G +GAGK+TL +L + +G+I V G+ + +
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAGHDLRRAPRAALA 74
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763
G Q +++ ++L + A L + ++ + + L E K
Sbjct: 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDK----- 129
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN-VADTGRTI 822
V L+ R+R+ I L+ P+++ +DEPT GLD + A + V+ D G ++
Sbjct: 130 ---VRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSV 186
Query: 823 VCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856
+ H +D E+ D L++L GR++ G
Sbjct: 187 LWATHL--VDEIEADDRLVVLHR-GRVLADGAAA 217
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 60/203 (29%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 629 PLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGE 688
P++ R E KL ++D ++ ++ G L+G +GAGKTT L +L G G
Sbjct: 7 PIDFRNVEKRYGDKL-VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA--GS 63
Query: 689 IKVNGYP---KIQETFVRVSGYCEQTDIHSPHITIEESLF-FSAWLRLAPQINSKTKADC 744
I + G P + + RV G Q D P T+ E+L F + L+ +
Sbjct: 64 ISLCGEPVPSRARHARQRV-GVVPQFDNLDPDFTVRENLLVFGRYFGLS----AAAARAL 118
Query: 745 VNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARA 804
V +L+ +L+ ++ VG LS ++RLT+ LV +P ++ +DEPTTGLD +A
Sbjct: 119 VPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA 173
Query: 805 AAIVMRAVKNVADTGRTIVCTIH 827
++ ++++ G+TI+ T H
Sbjct: 174 RHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 21/208 (10%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNG--YPKIQET 700
+LDD+ T+ G + A++G SG+GK+TLL+++ K G++ +NG P +
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGQETPPLNSK 68
Query: 701 FVR-----VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD 755
GY Q + T+EE+L L + +K + + +E
Sbjct: 69 KASKFRREKLGYLFQNFALIENETVEENL------DLGLKYKKLSKKEKREKKKEALEKV 122
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
G+ L + LS +++R+ + ++ P +I DEPT LD + V+ + +
Sbjct: 123 GLNLKLKQK--IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLEL 180
Query: 816 ADTGRTIVCTIHQPSIDIFESFDELILL 843
D G+TI+ H P + + D +I L
Sbjct: 181 NDEGKTIIIVTHDPE--VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-14
Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 22/217 (10%)
Query: 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY-P-KIQETFVRVS 705
D++ + G + +G +GAGK+T L +L G G+++VNG P + +E ++R
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGL--LLPTSGKVRVNGKDPFRRREEYLRSI 99
Query: 706 GYC----EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
G Q P +SL L+L +I A+ ++ + + ++L+G
Sbjct: 100 GLVMGQKLQLWWDLP---ALDSLEV---LKLIYEIPDDEFAERLDFLTEILDLEGF---- 149
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GR 820
+ P V LS QR R + L+ P ++F+DEPT GLD A A + +K +
Sbjct: 150 LKWP-VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQA 208
Query: 821 TIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857
T++ T H DI D ++L+ G++++ G L
Sbjct: 209 TVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLAQ 243
|
Length = 325 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 21/217 (9%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
LDD++ ++ G L AL+G SGAGK+TLL ++AG +T G I++NG + + V
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVSNLAVR 75
Query: 706 ----GYCEQTDIHSPHITIEESLFFSAWLRL--APQINSKTKADCVNHVLKTIELDGIKE 759
G+ Q PH+T+ +++ F +R + + + V +L+ ++L+G+ +
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR---VEELLRLVQLEGLAD 132
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV--KNVAD 817
P + LS QR+R+ + L P ++ +DEP LDA+ +R K
Sbjct: 133 RY---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK-ELRRWLRKLHDR 186
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
G T V H + E D +++L GRI GP
Sbjct: 187 LGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 36/231 (15%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP--KIQ 698
K +L D+ +++PG A++G +GAGKTTL+++L KG+I ++G I
Sbjct: 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDIRDIS 71
Query: 699 ETFVRVS-GYCEQTDIHSPHI---TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL 754
+R G Q + TI E++ + V K
Sbjct: 72 RKSLRSMIGVVLQ----DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAGA 118
Query: 755 DGIKESL-------VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807
L +G LS +R+ L I ++ +P I+ +DE T+ +D +
Sbjct: 119 HDFIMKLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177
Query: 808 VMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNH 858
+ A++ + GRT + H+ S I + D++++L G+II G H
Sbjct: 178 IQEALEKLMK-GRTSIIIAHRLST-IKNA-DKILVLD-DGKIIEE---GTH 221
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 35/222 (15%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQ---ET 700
LD+V+ T+R G A++G G+GK+TLL +LAG + TSG + ++G Q
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG----SVLLDGTDIRQLDPAD 75
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
R GY Q D+ + T+ +++ A P + +L+ EL G+ +
Sbjct: 76 LRRNIGYVPQ-DVTLFYGTLRDNITLGA-----PLADD-------ERILRAAELAGVTDF 122
Query: 761 LVGIP---------GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
+ P GLS QR+ + + L+ +P I+ +DEPT+ +D + +
Sbjct: 123 VNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKER 182
Query: 812 VKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
++ + +T++ H+PS+ + D +I++ GRI+ G
Sbjct: 183 LRQLL-GDKTLIIITHRPSLL--DLVDRIIVMD-SGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 30/228 (13%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGC--FKGEIKVNGYPK 696
++ LDDV+ +++ G L+G SG+GK+TL + G + TSG F G+ + +
Sbjct: 16 GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR 75
Query: 697 IQETFVRVSGYCEQTDIHS--PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL 754
+++ + Q + S P +TI E + + SK +A
Sbjct: 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH---GKLSKKEA----------RK 122
Query: 755 DGIKESLVGIPGVSG--------LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAA 806
+ + LVG+ LS QR+R+ I L NP ++ DEPT+ LD A
Sbjct: 123 EAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQA 182
Query: 807 IVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
++ +K + + G T++ H + + + D + ++ G+I+ G
Sbjct: 183 QILDLLKKLQEELGLTLLFITHDLGV-VAKIADRVAVMY-AGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 29/131 (22%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
Query: 312 ELFKACMSRELLLAKRNYFL-YLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLF 370
KA + RE L R+ L L++ IQ +++A + T+F + G LF
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGL---NRPGLLF 57
Query: 371 YTLVILIVDGISEI-PMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTS 429
++++ ++ I P+ + V ++ LY AYV+ ++++P+SL++++++
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 430 LTYYVIGFSPE 440
+ Y+++G
Sbjct: 118 IVYFMVGLPVS 128
|
Length = 210 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-14
Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 40/234 (17%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
LD V+ T+RPG + AL+G +GAGK+TL+ +L+G S GEI ++G P V
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS----GEILIDGKP------VA 73
Query: 704 VSGYCEQTD-----IH-----SPHITIEESLFFSAWLRLAP------QINSKTKADCVNH 747
S + +H P++++ E++F + + +
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE----- 128
Query: 748 VLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807
+L + LD ++LVG LS QR+ + I L + ++ +DEPT L +
Sbjct: 129 LLARLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETER 183
Query: 808 VMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSR 861
+ ++ + G I+ H+ ++FE D + +L+ GR++ + P +S
Sbjct: 184 LFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLR-DGRVVGTRPTAAETSE 235
|
Length = 500 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 5e-14
Identities = 67/217 (30%), Positives = 100/217 (46%), Gaps = 26/217 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGY-P-KIQETF 701
L ++ T+ G + +G +GAGKTT L +L+G + TSG E++V G P K ++ F
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG----EVRVAGLVPWKRRKKF 92
Query: 702 VR----VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
+R V G Q P I+ +A L P K + EL +
Sbjct: 93 LRRIGVVFGQKTQLWWDLP--VIDSFYLLAAIYDLPPARFKKRLDELS-------ELLDL 143
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN-VA 816
E L+ P V LS QR R I L+ P I+F+DEPT GLD A + +K
Sbjct: 144 -EELLDTP-VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+ G T++ T H DI ++++ GR++Y G
Sbjct: 202 ERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 5e-14
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 40/230 (17%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L+D++ ++ G AL+G SG GK+TLL ++AG R TS GE+ V+G P +
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS----GEVLVDGEP-VTGPGPD 74
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763
GY Q D P +T+ ++ + L ++ KA+ + +E LVG
Sbjct: 75 R-GYVFQQDALLPWLTVLDN------VALGLELQGVPKAEARERAEELLE-------LVG 120
Query: 764 IPGVSG-----LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV-AD 817
+ G LS R+R+ + L +P ++ +DEP + LDA + + ++ +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFE 867
TG+T++ H DI DE + L R++ L R++ E
Sbjct: 181 TGKTVLLVTH----DI----DEAVFL--ADRVV---VLSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 33/203 (16%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNG- 693
L D++ + G +TAL+G SG GK+TLL D++ G G E+ ++G
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG----EVLLDGK 67
Query: 694 -YPKIQETFVRVS---GYCEQTDIHSP---HITIEESLFFSAWLRLAPQINSKTKAD-CV 745
+ + + G Q P +I +++ + L I K + D V
Sbjct: 68 DIYDLDVDVLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLH---GIKLKEELDERV 120
Query: 746 NHVLKTIELDG-IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARA 804
L+ L +K+ L GLS Q++RL + L P ++ +DEPT+ LD +
Sbjct: 121 EEALRKAALWDEVKDRLHA----LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIS 176
Query: 805 AAIVMRAVKNVADTGRTIVCTIH 827
A + + + TIV H
Sbjct: 177 TAKIEELIAELKKE-YTIVIVTH 198
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 6e-14
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 49/209 (23%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYP--- 695
L ++DV+ +RPG + L+G +GAGKTTL +++ G + +SG F+G + G P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGR-DITGLPPHR 75
Query: 696 ----KIQETF--VRVSGYCEQTDIHSPHITIEE--------------SLFFSAWLRLAPQ 735
I TF R+ P +T+ E L + +
Sbjct: 76 IARLGIARTFQITRLF----------PGLTVLENVAVGAHARLGLSGLLGRPRARKEERE 125
Query: 736 INSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDE 795
+ + +L+ + L + + G LS Q++RL I L P ++ +DE
Sbjct: 126 ARERAR-----ELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDE 175
Query: 796 PTTGLDARAAAIVMRAVKNVADT-GRTIV 823
P GL+ + ++ + D G TI+
Sbjct: 176 PAAGLNPEETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 6e-14
Identities = 50/211 (23%), Positives = 102/211 (48%), Gaps = 18/211 (8%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETF 701
LDD++ ++ G + L+G +GAGKTT + ++ G SG E+ +G P
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSG----EVLFDGKPLDIAAR 69
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
R+ GY + P + + + L + A L+ + ++ + D L+ +EL
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRID---EWLERLELSEYANK- 124
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821
V LS ++++ ++ +P ++ +DEP +GLD ++ ++ +A G+T
Sbjct: 125 ----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 822 IVCTIHQPSIDIFESF-DELILLKTGGRIIY 851
++ + HQ +++ E D ++LL G ++Y
Sbjct: 181 VILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 137 RGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILIS 196
RG+S Q++RLT G E+ P +F+D+ T+GLD ++ IV L+ LA + IL +
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPS-ILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCT 164
Query: 197 LLQPSPETFHLFDDIILMAE-GKILYHG 223
+ QPS F FD ++L+ GK +Y G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 2e-13
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 13/216 (6%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-E 699
+LDD++ + G L AL+G SG GKTTLL +AG + G I +
Sbjct: 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75
Query: 700 TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
R Q PH+ +E+++ F + P KAD V ++L G+ +
Sbjct: 76 PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMP------KADIAERVADALKLVGLGD 129
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT- 818
+ +P + LS ++R+ I + P ++ +DEP + LDA A + + + +
Sbjct: 130 AAAHLP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187
Query: 819 -GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
TI+C H D D+ ++K GR+ G
Sbjct: 188 PELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 24/211 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L+D+ ++ G A++G SG GK+TLL ++AG + TS GE+ ++G P +
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS----GEVLLDGRP-VTGPGPD 73
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763
+ GY Q D P +T+ +++ L L + + +L+ + L G ++
Sbjct: 74 I-GYVFQEDALLPWLTVLDNVALG--LELR-GKSKAEARERAKELLELVGLAGFEDKY-- 127
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN-VADTGRTI 822
P LS R+R+ I L P ++ +DEP LDA + + +T +T+
Sbjct: 128 -PHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTV 184
Query: 823 VCTIHQPSIDIFESF---DELILLKTGGRII 850
+ H D+ E+ D +++L I
Sbjct: 185 LLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 18/187 (9%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFV 702
L ++ TL G L G +G+GKTTLL ++AG +G IK++G
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG----TIKLDGGDIDDPDVA 72
Query: 703 RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLV 762
Y + P +T+ E+L F W + L+ + L +
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEF--WAAFLGGEELD-----IAAALEAVGLAPLAH--- 122
Query: 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTI 822
+P LS Q++R+ + LV+N I +DEPT LDA A A+ ++ G +
Sbjct: 123 -LPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV 180
Query: 823 VCTIHQP 829
+ H P
Sbjct: 181 IAATHIP 187
|
Length = 207 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 19/189 (10%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP--KIQET 700
L D++ TL G + G +GAGKTTLL +LAG R +G E+ G P ++E+
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAG----EVYWQGEPIQNVRES 72
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
+ + Y +T E+L F W R + A + L + L G+++
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHF--WQR----FHGSGNAATIWEALAQVGLAGLEDL 126
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820
VG LS Q++R+ + ++ + +DEP T LD A++ + A G
Sbjct: 127 PVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGG 181
Query: 821 TIVCTIHQP 829
++ T HQP
Sbjct: 182 IVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 3e-13
Identities = 68/257 (26%), Positives = 123/257 (47%), Gaps = 31/257 (12%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP---KIQETF 701
+++D++ T+ G L+G +GAGK+T+ +L G + +G+I V G P + +
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLAR 76
Query: 702 VRVSGYCEQTDIHSPHITIEESLF-FSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
V + G Q D P T+ E+L F + + +++ + +L+ L ES
Sbjct: 77 VAI-GVVPQFDNLDPEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARL----ES 127
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820
+ V+ LS ++RLT+ L+ +P ++ +DEPTTGLD A ++ ++++ G+
Sbjct: 128 KADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 821 TIVCTIHQPSIDIFESF----DELILLKTGGRIIYSGP---LGNH-SSRVIEYFEGIPGV 872
TI+ T H E D L +L++G +I P + VIE + G P
Sbjct: 187 TILLTTH-----FMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEIYGGDP-- 239
Query: 873 PQIRNNYNPATWMLEVT 889
++R P +EV+
Sbjct: 240 DELRELIRPYARRIEVS 256
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 3e-13
Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 63/209 (30%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
LD V+ ++R G + AL+G +GAGK+TL+ +L+G + SG EI V+G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG----EILVDG---------- 61
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763
++ SP D G
Sbjct: 62 -----KEVSFASP-------------------------RDARRA---------------G 76
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIV 823
I V LS +R+ + I L N ++ +DEPT L + + ++ + G ++
Sbjct: 77 IAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 824 CTIHQPSIDIFESFDELILLKTGGRIIYS 852
H+ ++FE D + +L+ GR++ +
Sbjct: 137 FISHRLD-EVFEIADRVTVLR-DGRVVGT 163
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 4e-13
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 29/238 (12%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP---KIQETF 701
+++ ++ T+ G L+G +GAGK+T+ ++ G + G+I V G P + +
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLAR 113
Query: 702 VRVSGYCEQTDIHSPHITIEESLF-FSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
R+ G Q D T+ E+L F + + +++ + +L+ L ES
Sbjct: 114 ARI-GVVPQFDNLDLEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARL----ES 164
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820
VS LS ++RLT+ L+ +P ++ +DEPTTGLD A ++ ++++ G+
Sbjct: 165 KADAR-VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 223
Query: 821 TIVCTIHQPSIDIFESF----DELILLKTGGRIIYSGP---LGNH-SSRVIEYFEGIP 870
TI+ T H E D L +L+ G +I P + H +VIE + G P
Sbjct: 224 TILLTTH-----FMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEIYGGDP 276
|
Length = 340 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 25/223 (11%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ET 700
+LLD V+ LRPG + A++G +GAGK+TLL L+G + GE+ +NG P E
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKAD--CVNHVLKTIELDGIK 758
R Q + T++E + R+ + + + D L +L G+
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVEL------VANPSIIFMDEPTTGLDARAAAIVMRAV 812
LS +++R+ + L V + +F+DEPT+ LD +R
Sbjct: 130 GRD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 813 KNVADTGRTIVCTIHQPSIDIFESF-DELILLKTGGRIIYSGP 854
+ +A G ++ +H +++ + D ++LL GR+I SG
Sbjct: 185 RQLAREGGAVLAVLH--DLNLAAQYADRIVLLH-QGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 5e-13
Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 33/226 (14%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQET 700
+DD++ ++ G L+G SG GKTTLL ++AG + GEI ++G E
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDG-----ED 68
Query: 701 FVRVSGYCEQTDIHS--------PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI 752
V + I PH+T+EE++ F L++ ++ V L+ +
Sbjct: 69 ITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELV 124
Query: 753 ELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV 812
L+G + LS Q++R+ + LV P ++ +DEP + LDA+ + + +
Sbjct: 125 GLEGFADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKEL 179
Query: 813 KNVA-DTGRTIVCTIHQPSIDIFESF---DELILLKTGGRIIYSGP 854
K + + G T V H D E+ D + ++ GRI G
Sbjct: 180 KELQRELGITFVYVTH----DQEEALAMSDRIAVMN-DGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 5e-13
Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGCFKGEIKVNG-----YPKIQ 698
LL +V T+ G + LMG SG GK+TLL + G GE+ +N P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 699 ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK 758
R G Q + PH+++ ++L F+ L + + + N L+ LDG
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA 802
P + LS QR R+ + L+A P + +DEP + LD
Sbjct: 129 HQD---P--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 5e-13
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 37/197 (18%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKI-- 697
K Q+L V+ T+ G + AL+G +GAGKTTLL + G SG I+ +G I
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG----SIRFDGRD-ITG 66
Query: 698 QETFVRVS---GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE- 753
R GY + P +T+EE+L L + K +E
Sbjct: 67 LPPHERARAGIGYVPEGRRIFPELTVEENL------LLGAYARRRAKRK------ARLER 114
Query: 754 -------LDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAA 806
L ++ L G LS +++ L I L++ P ++ +DEP+ GL +
Sbjct: 115 VYELFPRLKERRKQLAG-----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 169
Query: 807 IVMRAVKNVADTGRTIV 823
+ A++ + D G TI+
Sbjct: 170 EIFEAIRELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 19/165 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPKIQETF 701
LDDV+ + G L AL+G SG+GKTTLL ++AG R SG F GE P +QE
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGE-DATDVP-VQE-- 73
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADC---VNHVLKTIELDGIK 758
R G+ Q H+T+ +++ F LR+ P+ +A+ V+ +LK ++LD +
Sbjct: 74 -RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLKLVQLDWLA 130
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
+ P + LS QR+R+ + L P ++ +DEP LDA+
Sbjct: 131 DRY---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 6e-13
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 16/192 (8%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG-----YPKIQET 700
L DV+ +R G L G SGAGKTTLL +L G T +G++++ G Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 701 FVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
+R G Q P T+ E++ +R + + V + G++
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK------EREIQRRVGAALRQVGLEH 129
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG 819
P LS +++R+ I +V +P ++ DEPT LD + ++ +K + G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 820 RTIVCTIHQPSI 831
T++ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 35/214 (16%)
Query: 655 PGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG----------YPKIQETFVRV 704
G+ TAL G SG+GKT+L++++AG +G I++NG + ++ R
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEK---RR 77
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
GY Q PH T+ +L + W + Q + + + L GI+ L
Sbjct: 78 IGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFD------------QLVALLGIEHLLDRY 125
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT-IV 823
PG LS +++R+ IG L+ P ++ MDEP LD ++ ++ + D I+
Sbjct: 126 PGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPIL 183
Query: 824 CTIHQPSID-IFESFDELILLKTGGRIIYSGPLG 856
H S+D + D +++L+ G++ SGPL
Sbjct: 184 YVSH--SLDEVLRLADRVVVLEN-GKVKASGPLE 214
|
Length = 352 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 2e-12
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 14/178 (7%)
Query: 653 LRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG---YPKIQETFVRVSGYCE 709
+RPG L+GV+GAGKTT +L G T G+ V G I + + GYC
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNM-GYCP 2018
Query: 710 QTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769
Q D +T E L+ A LR P ++ N ++++ L + L G
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVP---AEEIEKVANWSIQSLGLSLYADRLAGT----- 2070
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIH 827
S +++L+ + L+ P ++ +DEPTTG+D +A ++ + ++ GR +V T H
Sbjct: 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-12
Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 24/192 (12%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L + G + AL+G +GAGK+TLL L G R SG + + Y + R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESL- 761
P ++ LF A ++ +N L E++ ++E+L
Sbjct: 68 QR---VGLVFQDP----DDQLF-------AADVDQDVAFGPLNLGLSEAEVERRVREALT 113
Query: 762 -VGIPG-----VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
VG G LS ++KR+ I + P ++ +DEPT GLD ++ ++ +
Sbjct: 114 AVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL 173
Query: 816 ADTGRTIVCTIH 827
G T+V + H
Sbjct: 174 RAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 3e-12
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 20/189 (10%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP--KIQET 700
L + ++ TL G + G +G GKTTLL +LAG R SG E++ NG + ++
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG----EVRWNGTALAEQRDE 70
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
R Y P ++ E+L F W + + L + L G ++
Sbjct: 71 PHRNILYLGHLPGLKPELSALENLHF--WAAI-----HGGAQRTIEDALAAVGLTGFEDL 123
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820
LS Q++RL + ++ + +DEPTT LD A++ ++ G
Sbjct: 124 PAA-----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGG 178
Query: 821 TIVCTIHQP 829
++ T HQ
Sbjct: 179 IVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-12
Identities = 56/268 (20%), Positives = 106/268 (39%), Gaps = 37/268 (13%)
Query: 594 VEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTL 653
+ D Q + +++ ++ + + L + TL
Sbjct: 316 ILDQKPEVTFPDEQ--TATTGQALELRNVSFTYPGQ------------QTKALKNFNLTL 361
Query: 654 RPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDI 713
G A++G SG+GK+TLL +LAG +G I +NG ++ EQ
Sbjct: 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQ--QGSITLNGVE--------IASLDEQALR 411
Query: 714 HSPHITIEESLFFSAWLRLAPQINSKTKAD-CVNHVLKTIELDGIKESL-------VGIP 765
+ + + FS LR ++ + +D + L+ + L+ + ES +G
Sbjct: 412 ETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEG 471
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCT 825
G LS +R+RL + L+ + + +DEPT GLD V+ + A+ ++ T
Sbjct: 472 G-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVT 530
Query: 826 IHQPSIDIFESFDELILLKTGGRIIYSG 853
++ + I++ G+II G
Sbjct: 531 HRLRGLERM----DRIIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 51/213 (23%), Positives = 93/213 (43%), Gaps = 20/213 (9%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG-----YPKIQET 700
L +V+ + G ++G +G+GK+ LL+ +AG G+I +NG P +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD--SGKILLNGKDITNLPPEKRD 72
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
Y Q PH+T+ +++ + R + + K VL+ E+ GI
Sbjct: 73 I----SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERK------VLEIAEMLGIDHL 122
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820
L P LS +++R+ I LV NP I+ +DEP + LD R + +K +
Sbjct: 123 LNRKPET--LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFG 180
Query: 821 TIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
V + + + D++ ++ G++I G
Sbjct: 181 VTVLHVTHDFEEAWALADKVAIML-NGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-12
Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 33/222 (14%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY--PKIQETFV 702
+LD+++ ++PG + ++G SG+GK+TL ++ G + V+G+ ++
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE--NGRVLVDGHDLALADPAWL 74
Query: 703 RVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE-- 759
R G Q E++ F+ +R I + V++ +L G +
Sbjct: 75 RRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLAGAHDFI 121
Query: 760 --------SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
++VG G GLS QR+R+ I L+ NP I+ DE T+ LD + +MR
Sbjct: 122 SELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180
Query: 812 VKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+ ++ GRT++ H+ S ++ D +I+++ GRI+ G
Sbjct: 181 MHDICA-GRTVIIIAHRLS--TVKNADRIIVME-KGRIVEQG 218
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 6e-12
Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 41/228 (17%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP----KIQET 700
+LD V ++R G L L+G +GAGKTTLL + G T G + V G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA--GTVLVAGDDVEALSARAA 75
Query: 701 FVRVSGYCEQTDI-------------HSPHITIEESLFFSAWLRLAPQINSKTKADCVNH 747
RV+ + T + +PH + R + A V
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS-----------RFDTWTETDRAA--VER 122
Query: 748 VLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807
++ + + V+ LS +R+R+ + L ++ +DEPT LD
Sbjct: 123 AMERTGVAQFADR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVR 177
Query: 808 VMRAVKNVADTGRTIVCTIHQPSIDIFESF-DELILLKTGGRIIYSGP 854
+ V+ + D G+T V IH +D+ + DEL+LL GR+ +GP
Sbjct: 178 TLELVRRLVDDGKTAVAAIH--DLDLAARYCDELVLL-ADGRVRAAGP 222
|
Length = 402 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 7e-12
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 24/217 (11%)
Query: 648 DVTGTLRPGV-LTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG---YPKIQETFV- 702
D TL PG +TA+ G SG+GKTTL+ ++AG +GEI +NG + + F+
Sbjct: 15 DADFTL-PGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLP 71
Query: 703 ---RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
R GY Q PH+++ +L + + + + IEL GI
Sbjct: 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFE--------RVIELLGIGH 123
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-T 818
L +PG LS +++R+ IG L+++P ++ MDEP LD ++ ++ +
Sbjct: 124 LLGRLPG--RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855
G I+ H ++ D +++L+ GR+ +GP+
Sbjct: 182 GIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 8e-12
Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 27/220 (12%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
L+DV+ T+ G L ++G SG GKTTLL+++AG T +G I++NG R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS--RGSIQLNGRRIEGPGAER- 76
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
G Q + P + + +++ F L+L I + + + +L + L+G +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFG--LQLR-GIEKAQRREIAHQMLALVGLEGAEHKY--- 129
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA----RAAAIVMRAVKNVADTGR 820
+ LS R+R+ I L P ++ +DEP LDA + +++ + +TG+
Sbjct: 130 --IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ---ETGK 184
Query: 821 TIVCTIHQPSIDIFESF---DELILLKTG-GRIIYSGPLG 856
++ H DI E+ L++L G GR++ PL
Sbjct: 185 QVLLITH----DIEEALFLATRLVVLSPGPGRVVERLPLD 220
|
Length = 259 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 8e-12
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 17/217 (7%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP--KI 697
K +L D++ ++ PG A++G SG+GK+TL+ +L TSG EI ++G I
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSG----EILIDGIDIRDI 396
Query: 698 QETFVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
+R G Q D TI E++ +I K + + L
Sbjct: 397 SLDSLRKRIGIVSQ-DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFI--ANLPD 453
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
+++VG GV LS QR+RL I L+ NP I+ +DE T+ LD A++ A+K +
Sbjct: 454 GYDTIVGERGV-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL 512
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
GRT + H+ S ++ D +I+L GRI+ G
Sbjct: 513 K-GRTTLIIAHRLS--TIKNADRIIVLDN-GRIVERG 545
|
Length = 567 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 23/217 (10%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP---KIQETFV 702
L D + T+ G + AL+GV+G+GK+TL L G G+I + G P +Q+ V
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLV 80
Query: 703 RVSGYCEQTDIHSPHITIEESLFFS-----AWLRLAPQINSKTKADCVNHVLKTIELDGI 757
E+ D P + +E+ + WLR A K V L +++
Sbjct: 81 AYVPQSEEVDWSFP-VLVEDVVMMGRYGHMGWLRRA----KKRDRQIVTAALARVDMVEF 135
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817
+ +G LS Q+KR+ + + +I +DEP TG+D + A ++ ++ + D
Sbjct: 136 RHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD 190
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
G+T++ + H + E D +++K G ++ SGP
Sbjct: 191 EGKTMLVSTHNLG-SVTEFCDYTVMVK--GTVLASGP 224
|
Length = 272 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP--K 696
+ +DDV T+ G L+G SG+GKTT L ++ TS GEI ++G
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS----GEILIDGEDISD 67
Query: 697 IQETFVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD 755
+ +R GY Q PH+T+ E+ + P++ K + ++L
Sbjct: 68 LDPVELRRKIGYVIQQIGLFPHLTVAEN------IATVPKLLGWDKERIKKRADELLDLV 121
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA--RAAA-IVMRAV 812
G+ S LS Q++R+ + L A+P I+ MDEP LD R ++ +
Sbjct: 122 GLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL 181
Query: 813 KNVADTGRTIVCTIHQPSIDIFESF---DELILLKTGGRII 850
+ + G+TIV H DI E+ D + ++ G I+
Sbjct: 182 Q--KELGKTIVFVTH----DIDEALKLADRIAVMD-AGEIV 215
|
Length = 309 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG-CFKGEIKVNG-YPK---IQ 698
LDD+ + G L+G SG GKTT L ++AG TSG + G V PK I
Sbjct: 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIA 75
Query: 699 ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQ--INSKTKADCVNHVLKTIELDG 756
F + Y PH+T+ +++ F LR P+ I+ + V + EL
Sbjct: 76 MVFQNYALY--------PHMTVYDNIAFGLKLRKVPKDEIDER--------VREVAELLQ 119
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
I+ L P LS QR+R+ +G +V P + MDEP + LDA+
Sbjct: 120 IEHLLDRKP--KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 26/204 (12%)
Query: 640 AHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP-- 695
+L +L V ++ G A++G SG+GK+TLL VLAG +S GE+++ G P
Sbjct: 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS----GEVRLLGQPLH 75
Query: 696 KIQE---TFVRVS--GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLK 750
K+ E +R G+ Q+ P++T E++ LR +S+ A
Sbjct: 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK------A 129
Query: 751 TIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD---ARAAAI 807
+E G+ + L P LS +++R+ + P ++F DEPT LD A
Sbjct: 130 LLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIAD 187
Query: 808 VMRAVKNVADTGRTIVCTIHQPSI 831
++ A+ + G T+V H P +
Sbjct: 188 LLFAL--NRERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 20/209 (9%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVR--VSGYCE 709
T+ G + A++G SGAGK+TLL+++AG +T GEI +NG VS +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 710 QTDIHSPHITIEESLFF--SAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767
+ ++ + H+T+ +++ S L+L + K V + L G + L PG
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKLNAEQREK-----VEAAAAQVGLAGFLKRL---PGE 129
Query: 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTI 826
LS QR+R+ + LV I+ +DEP + LD A ++ V + D T++
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT 187
Query: 827 HQPSIDIFESFDELILLKTGGRIIYSGPL 855
H P D D ++ L GRI G
Sbjct: 188 HHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 2e-11
Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
LDD++ R G + ALMG +GAGK+TLL +L+G G I ++G +R +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQE------MRFA 71
Query: 706 GYCEQTD-----IH-----SPHITIEESLFFSAWLRLAPQ----INSKTKADCVNHVLKT 751
I+ P +T+ E+L +L P +N + L+
Sbjct: 72 STTAALAAGVAIIYQELHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEH 127
Query: 752 IELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
+ +D I + LS QR+ + I L N +I DEPT+ L AR + R
Sbjct: 128 LGVD-IDPDT----PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV 182
Query: 812 VKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849
++ + GR I+ H+ +IF D + + K G +
Sbjct: 183 IRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 26/210 (12%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVR-----VSG 706
T G +TA++G SG+GK+TLL+++AG +T G + +NG + T VS
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLING---VDVTAAPPADRPVSM 74
Query: 707 YCEQTDIHSPHITIEES--LFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
++ ++ H+T+E++ L S L+L + + L + L G+++ L G
Sbjct: 75 LFQENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEV-----ALARVGLAGLEKRLPG- 127
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD-ARAAAIVMRAVKNVADTGRTIV 823
LS +R+R+ + LV + ++ +DEP LD A A ++ + A+T T++
Sbjct: 128 ----ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVL 183
Query: 824 CTIHQPSIDIFESFDELILLKTGGRIIYSG 853
HQP D ++ L GRI G
Sbjct: 184 MVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 28/220 (12%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP----KIQETF 701
LDDV+ + G +T+++G +GAGK+TLL +++ + GEI ++G +E
Sbjct: 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS--RLLKKDSGEITIDGLELTSTPSKELA 74
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE---LDGIK 758
++S ++ I+S +T+ + + F + P + + + + IE L+ +
Sbjct: 75 KKLSILKQENHINS-RLTVRDLVGFGRF----PYSQGRLTKEDRRIINEAIEYLHLEDLS 129
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
+ + LS QR+R I + L + + +DEP LD + + +M+ ++ +AD
Sbjct: 130 DRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE 184
Query: 819 -GRTIVCTIHQPSIDI-FESF--DELILLKTGGRIIYSGP 854
G+TIV +H DI F S D ++ LK G+++ G
Sbjct: 185 LGKTIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-11
Identities = 52/228 (22%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPK---IQ 698
+ DV+ + PG + ++G SG+GK+TL L G + GE+ ++G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 699 ETFVRVSGYCEQTDIH--------SPHITIEESLFFSAWLRLAPQINSK-TKADCVNHVL 749
++ G ++ + +P +TI + + R A +++ K ++A+ +
Sbjct: 83 REMRKLRG--KRIAMIFQDPMTSLNPVMTIGDQI------REALRLHGKGSRAEARKRAV 134
Query: 750 KTIELDGI--KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807
+ +E G+ E P LS R+R+ I + L P ++ DEPTT LD A
Sbjct: 135 ELLEQVGLPDPERRDRYPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQ 192
Query: 808 VMRAVKN-VADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
++ +K+ + G ++ H + + E D ++++ G I+ +GP
Sbjct: 193 ILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMY-KGEIVETGP 238
|
Length = 539 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 59/229 (25%), Positives = 106/229 (46%), Gaps = 31/229 (13%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNG-----Y 694
+ LDDV+ + G + ++G SGAGK+TLL ++ R TSG + V+G
Sbjct: 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG----SVFVDGQDLTAL 73
Query: 695 PKIQ-ETFVRVSGYCEQTDIHSPHI----TIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
+ + + G Q H ++ T+ E++ F L LA KA+ V
Sbjct: 74 SEAELRQLRQKIGMIFQ---H-FNLLSSRTVFENVAFP--LELA----GVPKAEIKQRVA 123
Query: 750 KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
+ +EL G+ + P + LS Q++R+ I L NP I+ DE T+ LD ++
Sbjct: 124 ELLELVGLSDKADRYP--AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL 181
Query: 810 RAVKNV-ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857
+K++ + G TIV H+ +++ + + + + GR++ G +
Sbjct: 182 ELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQGRLVEEGTVSE 228
|
Length = 339 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-11
Identities = 59/224 (26%), Positives = 108/224 (48%), Gaps = 43/224 (19%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVR 703
+L DV+ TL PG +TAL+G SG+GK+T++ +L G++ ++G P
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALL--ENFYQPQGGQVLLDGKP-------- 77
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763
+S Y E +HS + + P + +++ D + + L++ + +KE+
Sbjct: 78 ISQY-EHKYLHSKVSLVGQE----------PVLFARSLQDNIAYGLQSCSFECVKEAAQK 126
Query: 764 ------IPGV-SGLSTE-----------QRKRLTIGVELVANPSIIFMDEPTTGLDARAA 805
I + SG TE Q++R+ I L+ NP ++ +DE T+ LDA +
Sbjct: 127 AHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186
Query: 806 AIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849
V +A+ + RT++ H+ + E D++++L GGRI
Sbjct: 187 QQVQQALYD-WPERRTVLVIAHR--LSTVERADQILVLD-GGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 4e-11
Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 28/192 (14%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFV 702
L ++ TL G + G +G+GKTTLL +LAG +G + +NG P F
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG----RVLLNGGP---LDFQ 67
Query: 703 RVSGYCEQTDI-HSPHI----TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
R S + H+P I ++ E+L F W +S + V L + L+G
Sbjct: 68 RDSIARGLLYLGHAPGIKTTLSVLENLRF--WHA----DHSD---EQVEEALARVGLNGF 118
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817
++ V LS Q++R+ + L++ + +DEPTT LD A A+
Sbjct: 119 EDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA 173
Query: 818 TGRTIVCTIHQP 829
G +V T HQ
Sbjct: 174 RGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-11
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 23 VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQG 70
V G++ YNG +EF YVS+ D+H P +TVRETLDF+ C+G
Sbjct: 63 VEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 5e-11
Identities = 62/214 (28%), Positives = 89/214 (41%), Gaps = 35/214 (16%)
Query: 653 LRPGVLTALMGVSGAGKTTLL-DVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQT 711
G L L+G +GAGKTTLL +L + KG +KV G + R GY Q
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 712 D-------IHSPHITIEESLFFSAWLRLAPQINSKTKAD--CVNHVLKTIELDGIKESLV 762
I H + WLR AD V L+ + L + + V
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLR------RPCVADFAAVRDALRRVGLTELADRPV 111
Query: 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTI 822
G LS QR+R+ + L PS++ +DEP TGLD ++ +A G I
Sbjct: 112 G-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAI 166
Query: 823 VCTIHQPSIDIFESF---DELILLKTGGRIIYSG 853
+ T H D+ ++ D ++LL GR+I G
Sbjct: 167 LMTTH----DLAQAMATCDRVVLLN--GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 21/190 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPKIQETF 701
L+D++ ++ PG L L+G +GAGKTTL+DV+ G R G F G+ + P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 702 VRVSGYCE--QTDIHSPHITIEESLFF------SAWLRLAPQINSKTKADCVNHVLKTIE 753
R G Q ++T+ E+L S + L ++ + + ++ +L TI
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRA-EERRRIDELLATIG 136
Query: 754 LDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
L ++ L + LS Q++ L IG+ L +P ++ +DEP G+ +K
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLK 191
Query: 814 NVADTGRTIV 823
++A +V
Sbjct: 192 SLAGKHSILV 201
|
Length = 249 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 5e-11
Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 68/265 (25%)
Query: 620 QDLQYSIDTPLEMRRRECG-LAHK-LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLA 677
+ + + + P+ + + L+ L + TL G AL+G SGAGKT+LL+ L
Sbjct: 338 GEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL 397
Query: 678 GRKTSGCF---KGEIKVNGYPKIQETFVRVSGYCEQTDI----------------HSPHI 718
G F +G +K+NG E ++ PH
Sbjct: 398 G------FLPYQGSLKING--------------IELRELDPESWRKHLSWVGQNPQLPHG 437
Query: 719 TIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIP---------GVS 768
T+ ++ + L P + + + L E + E L +P +
Sbjct: 438 TLRDN------VLLGNPDASDEQ----LQQAL---ENAWVSEFLPLLPQGLDTPIGDQAA 484
Query: 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQ 828
GLS Q +RL + L+ ++ +DEPT LDA + +VM+A+ + T++ T HQ
Sbjct: 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVT-HQ 543
Query: 829 PSIDIFESFDELILLKTGGRIIYSG 853
++ +D+ I + G+I+ G
Sbjct: 544 --LEDLAQWDQ-IWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-11
Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
+++++ T+ + L+G +GAGK+TLL ++ G R TSG EI +G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG----EIIFDGHPWTRKDLHK 71
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763
+ E ++ ++T E+L L P ++ VL ++L +
Sbjct: 72 IGSLIESPPLYE-NLTARENLKVHTTLLGLPDSR-------IDEVLNIVDLTNTGKKKAK 123
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
S ++RL I + L+ +P ++ +DEPT GLD
Sbjct: 124 -----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-11
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 31/215 (14%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR---KTSGCFKGEIKVNGYPKIQETF 701
++++ + G L+G SG+GKTT + ++ R TSG EI ++G ++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI-NRLIEPTSG----EIFIDGEDIREQDP 70
Query: 702 VRVS---GYCEQTDIHSPHITIEESLFFSAWLRLAPQIN---SKTKADCVNHVLKTIELD 755
V + GY Q PH+T+EE++ L P++ + + + +L + LD
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENI------ALVPKLLKWPKEKIRERADELLALVGLD 124
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
E P LS Q++R+ + L A+P ++ MDEP LD + K +
Sbjct: 125 -PAEFADRYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRL 181
Query: 816 ADT-GRTIVCTIHQPSIDIFESF---DELILLKTG 846
G+TIV H DI E+F D + ++K G
Sbjct: 182 QQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 7e-11
Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 40/227 (17%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNG----YPKI 697
+ L + G + AL+G +GAGK+TL G + TSG E+ + G Y K
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG----EVLIKGEPIKYDKK 71
Query: 698 QETFVRVS-GYCEQT---DIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE 753
VR + G Q + +P T+EE + F +N + V
Sbjct: 72 SLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGP-------LNLGLSKEEVE------- 115
Query: 754 LDGIKESL--VGIPGVSG-----LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAA 806
+KE+L VG+ G LS Q+KR+ I L P II +DEPT+GLD A+
Sbjct: 116 -KRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 807 IVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+M+ + ++ G TI+ + H +D+ + + + + + G+II G
Sbjct: 175 QIMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 22/220 (10%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP--KIQETF 701
L DV+ + G L G SGAGK+TLL ++ G R T +G+I VNG+ +++
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT----RGKILVNGHDLSRLKGRE 73
Query: 702 V----RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
+ R G Q P T+ E++ ++ K + V + ++L G+
Sbjct: 74 IPFLRRQIGVVFQDFRLLPDRTVYENVAL------PLRVIGKPPREIRRRVSEVLDLVGL 127
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817
K +P S LS +++R+ I +V P+++ DEPT LD + +MR + +
Sbjct: 128 KHKARALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR 185
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857
G T++ H +++ +L GR++ G
Sbjct: 186 LGTTVLMATH--DLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 8e-11
Identities = 68/270 (25%), Positives = 114/270 (42%), Gaps = 38/270 (14%)
Query: 619 FQDLQYSID--TPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVL 676
Q++ Y+ TP E R L DV T+ G TA +G +G+GK+T++ +L
Sbjct: 5 LQNVSYTYQAGTPFEGRA-----------LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLL 53
Query: 677 AGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITI-------EESLFFSAW 729
G +G ++V+ ++ + DI + E LF
Sbjct: 54 NGLHVPT--QGSVRVDD--------TLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETV 103
Query: 730 LR---LAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVA 786
L+ PQ ++ + + + L GI ESL LS Q +R+ I L
Sbjct: 104 LKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFE-LSGGQMRRVAIAGILAM 162
Query: 787 NPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846
P I+ +DEPT GLD + +M K + +G TIV H +D ++ + + +
Sbjct: 163 EPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL--MDDVANYADFVYVLEK 220
Query: 847 GRIIYSGPLGNHSSRVIEYFEGIP-GVPQI 875
G+++ SG + V ++ E GVP+I
Sbjct: 221 GKLVLSGKPKDIFQDV-DFLEEKQLGVPKI 249
|
Length = 280 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 19/207 (9%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPKIQET 700
+L++++ ++R G A+ G SG GK+TLL ++A TSG F+GE V+ K +
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-DVSTL-KPEAY 75
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
+VS YC QT T+E++L F +R N + +L L +S
Sbjct: 76 RQQVS-YCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAALDLLARFALP---DS 125
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD-ARAAAIVMRAVKNVADTG 819
++ ++ LS +++R+ + L P I+ +DE T+ LD + I + V +
Sbjct: 126 ILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184
Query: 820 RTIVCTIHQPSIDIFESFDELILLKTG 846
++ H I D++I L+ G
Sbjct: 185 VAVLWITHDKDQAI-RHADKVITLQPG 210
|
Length = 223 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 11/159 (6%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-ETFVRV 704
LD V+ ++ G L+G SG GKTTLL ++AG +T GEI ++G R
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLPPHKRP 73
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
Q PH+T+ E++ F LRL ++ + V L ++L+G
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGYANRK--- 127
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
S LS Q++R+ I LV P ++ +DEP LD +
Sbjct: 128 --PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 31/221 (14%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPK--IQET 700
L+++ + TL+PG AL+G SG+GK+T+ ++AG + SG EI +G P+ I
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 701 FVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
+ S +Q DI T+ ++L + W P AD V K + +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPD------ADLVR-ACKDAAIHDVIT 599
Query: 760 SLVG------IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
S G G + LS QR+RL I LV NPSI+ +DE T+ LD I+
Sbjct: 600 SRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDD--- 656
Query: 814 NVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
N+ G T + H+ S I + DE+I+L+ G+++ G
Sbjct: 657 NLRRRGCTCIIVAHRLST-IRDC-DEIIVLER-GKVVQRGT 694
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 657 VLTALMGVSGAGKTTLL---DVLAGRKTSGCFKGEIKVNG----YPKIQETFVRVS-GYC 708
+ ALMG SG GK+TLL + L +GE+++ G P + VR G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 709 EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKAD-CVNHVLKTIEL-DGIKESLVGIPG 766
Q PH+TI +++ ++L + SK + D V LK L D +K+ L P
Sbjct: 91 FQYPNPFPHLTIYDNVAIG--VKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYP- 147
Query: 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTI 826
S LS QR+RL I L P I+ MDEPT +D A + + + TIV
Sbjct: 148 -SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVT 205
Query: 827 HQPS 830
H P+
Sbjct: 206 HSPA 209
|
Length = 253 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-10
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 37/224 (16%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNG--YPKIQETF 701
LD+V+ T+RPG A++G G+GK+TLL +L G + T G + ++G +I
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 702 VRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE- 759
+R + GY Q D + T+ +++ A P + + +L+ EL G+ E
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDEE-------ILRAAELAGVTEF 583
Query: 760 ---------SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
+G G LS QR+ + + L+ +P I+ +DEPT+ +D R+
Sbjct: 584 VRRHPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 811 AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+K G+T+V H+ S + + D +I++ GRI+ GP
Sbjct: 643 RLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 56/221 (25%), Positives = 104/221 (47%), Gaps = 29/221 (13%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQET---F 701
+L+D++ +L G +TAL+G +G GK+TLL A T G + + P +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 702 VRVSGYCEQTDIHSPHITIEE------SLFFSAWLRLAPQINSKTKADCVNHVLKTIELD 755
R Q + IT+ E S + S W RL+ + N++ VN ++ ++
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR-----VNQAMEQTRIN 129
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
+ + + + LS QR+R + + L + ++ +DEPTT LD +MR ++ +
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 816 ADTGRTIVCTIHQPSIDIFES---FDELILLKTGGRIIYSG 853
G+T+V +H D+ ++ D L++L G ++ G
Sbjct: 185 NTQGKTVVTVLH----DLNQASRYCDHLVVLA-NGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 49/203 (24%), Positives = 96/203 (47%), Gaps = 36/203 (17%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETF 701
+L + T++ G + ++G SG+GK+TLL + + G I ++G
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD--SGTIIIDG-------- 61
Query: 702 VRVSGYCEQTDIHS---------------PHITIEESLFFSAWLRLAP-QINSKTKADCV 745
++++ ++ +I+ PH+T+ E++ LAP ++ +KA+
Sbjct: 62 LKLTD--DKKNINELRQKVGMVFQQFNLFPHLTVLENI------TLAPIKVKGMSKAEAE 113
Query: 746 NHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAA 805
L+ +E G+ + P + LS Q++R+ I L NP ++ DEPT+ LD
Sbjct: 114 ERALELLEKVGLADKADAYP--AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171
Query: 806 AIVMRAVKNVADTGRTIVCTIHQ 828
V+ +K++A+ G T+V H+
Sbjct: 172 GEVLDVMKDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 3e-10
Identities = 66/281 (23%), Positives = 104/281 (37%), Gaps = 79/281 (28%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTT-------LLDVLAGRKTSGCFKGEIKVNG--- 693
+ +D V+ L+ G + ++G SG+GK+ LL R G EI +G
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG----EILFDGKDL 74
Query: 694 -------YPKIQETFVRVSGYCEQTDIHS--PHITIEESLFFSAWLRLAPQI-------- 736
KI+ + Q + S P +TI + QI
Sbjct: 75 LSLSEKELRKIRGKEI---AMIFQDPMTSLNPVMTIGD------------QIAEVLRLHG 119
Query: 737 NSKTKADCVNHVLKTIELDGIKESLVGIPGVSG--------LSTEQRKRLTIGVELVANP 788
+K + ++ +EL VGIP LS R+R+ I + L NP
Sbjct: 120 KGLSKKEAKERAIELLEL-------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNP 172
Query: 789 SIIFMDEPTTGLDARAAAIVMRAVKN-VADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847
++ DEPTT LD A ++ +K + G ++ H + + E D + ++ G
Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY-AG 230
Query: 848 RIIYSGP---------------LGNHSSRVIEYFEGIPGVP 873
RI+ GP L N R+ E IPG P
Sbjct: 231 RIVEEGPVEEIFKNPKHPYTRGLLNSLPRLGERLPPIPGSP 271
|
Length = 316 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 21/210 (10%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L+D+ TL G L ++G SG GKTTLL+++AG G I ++G P R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLDGKPVEGPGAER-- 72
Query: 706 GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765
G Q + P +++++ F L ++ A + +LK + L+G ++ +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIA---HQMLKKVGLEGAEKRYIW-- 127
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV-ADTGRTIVC 824
LS QR+R+ I L ANP ++ +DEP LDA + + + +TG+ ++
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLL 184
Query: 825 TIHQPSIDIFESF---DELILLKTG-GRII 850
H DI E+ EL+LL G GR++
Sbjct: 185 ITH----DIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 32/172 (18%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGC--FKGEIKVNGYPK----- 696
L+D++ + PG L ++G +GAGKTT++DV+ G R G F G + G P+
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGT-DLTGLPEHQIAR 76
Query: 697 --IQETFVRVSGYCEQT-----DIHSP-HITIEESLFFSAWLRLAPQINSKTKADCVNHV 748
I F + + + T ++ P ++ SLFF RL S + D + V
Sbjct: 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFF----RL-----SAEEKDRIEEV 127
Query: 749 LKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800
L+TI L + L G+ LS Q++ L IG+ L+ +P ++ +DEP G+
Sbjct: 128 LETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 23 VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS----RADIL 78
V+GEV NG L++ +K+ YV Q D+ P +TVRETL F+ +G+ R I
Sbjct: 64 VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIA 123
Query: 79 LEL 81
LEL
Sbjct: 124 LEL 126
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 24/155 (15%)
Query: 663 GVSGAGKTTLLDVLAGRK--TSG-CFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHIT 719
G SG GK+TLL ++AG + TSG F GE ++N P + R G Q+ PH++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 720 IEESLFFSAWLRLA----PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775
+ E++ F L+LA +IN + VN V + ++L + + P LS QR
Sbjct: 92 VAENMSFG--LKLAGAKKEEINQR-----VNQVAEVLQLAHLLDRK---P--KALSGGQR 139
Query: 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
+R+ IG LVA PS+ +DEP + LDA A + MR
Sbjct: 140 QRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 5e-10
Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNG---YP 695
++L ++ ++ G + ++G SG+GK+TLL L G SG I V+G
Sbjct: 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG----SITVDGEDVGD 68
Query: 696 KIQETFVRV-SGYCEQTDIHS----PHITIEESLFFSAWLRLAPQINSKT-KADCVNHVL 749
K +R G Q PH+T+ E++ LAP K KA+ L
Sbjct: 69 KKDILKLRRKVGMVFQ----QFNLFPHLTVLENVT------LAPVKVKKLSKAEAREKAL 118
Query: 750 KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
+ +E G+ + P + LS Q++R+ I L +P ++ DEPT+ LD V+
Sbjct: 119 ELLEKVGLADKADAYP--AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVL 176
Query: 810 RAVKNVADTGRTIVCTIHQ 828
+K++A+ G T++ H+
Sbjct: 177 DVMKDLAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 6e-10
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 33/189 (17%)
Query: 638 GLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP 695
+++ +DDV+ LR G L+G SG+GK+TL +LAG +S G I +G
Sbjct: 299 RERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS----GSIIFDGQD 354
Query: 696 -------------KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKA 742
+IQ F + +P +T+ + L LR+ + A
Sbjct: 355 LDLTGGELRRLRRRIQMVFQ------DPYSSLNPRMTVGDILAEP--LRIHGGGS---GA 403
Query: 743 DCVNHVLKTIELDGIKESLVG-IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
+ V + +EL G+ + P LS QR+R+ I L P ++ +DEP + LD
Sbjct: 404 ERRARVAELLELVGLPPEFLDRYPH--ELSGGQRQRVAIARALALEPKLLILDEPVSALD 461
Query: 802 ARAAAIVMR 810
A V+
Sbjct: 462 VSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-10
Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 30/221 (13%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFV 702
L ++ L+ G ++G SG+GK+TL +L G G ++++G Q E
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLG 409
Query: 703 RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLV 762
R GY Q D+ TI E++ R + + + V++ L G+ E ++
Sbjct: 410 RHIGYLPQ-DVELFDGTIAENI-----ARFGEEADPEK-------VIEAARLAGVHELIL 456
Query: 763 GIP---------GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
+P G + LS QR+R+ + L +P ++ +DEP + LD+ A + A+
Sbjct: 457 RLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAIL 516
Query: 814 NVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
G T+V H+PS S D++++L+ GRI GP
Sbjct: 517 AAKARGGTVVVIAHRPS--ALASVDKILVLQ-DGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 15/198 (7%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVR--VSGYCE 709
+ G + A+MG SGAGK+TLL+++AG G IKVN + VS +
Sbjct: 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA--SGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 710 QTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769
+ ++ H+T+ +++ L L P + K A+ V+ + GI + L +P
Sbjct: 78 ENNLF-AHLTVRQNI----GLGLHPGL--KLNAEQQEKVVDAAQQVGIADYLDRLPE--Q 128
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQ 828
LS QR+R+ + LV I+ +DEP + LD ++ VK + RT++ H
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188
Query: 829 PSIDIFESFDELILLKTG 846
S D ++ ++ G
Sbjct: 189 LS-DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 21/176 (11%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP------ 695
++L V+ ++ G + A++G SG+GK+TLL +L G GE+ NG
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT--SGEVLFNGQSLSKLSS 74
Query: 696 -KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQ-INSKTKADCVNHVLKTI 752
+ + + G+ Q H H+ + F+A +A P I K+ + + +
Sbjct: 75 NERAKLRNKKLGFIYQ--FH--HLLPD----FTALENVAMPLLIGKKSVKEAKERAYEML 126
Query: 753 ELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIV 808
E G++ + P S LS +R+R+ I LV PS++ DEPT LD A I+
Sbjct: 127 EKVGLEHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKII 180
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 55/215 (25%), Positives = 106/215 (49%), Gaps = 21/215 (9%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR---KTSGCFKGEIKVNGYPKIQE--- 699
L D++ + G AL+G SG+GK+TL++++ R SG I ++G+ +++
Sbjct: 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYDVDSG----RILIDGH-DVRDYTL 71
Query: 700 -TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK 758
+ R G Q D+ + T+ E++ + ++ +A + + EL
Sbjct: 72 ASLRRQIGLVSQ-DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIM--ELPEGY 128
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
++++G GV LS QR+R+ I L+ +P I+ +DE T+ LD + +V A++ +
Sbjct: 129 DTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK- 186
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
RT H+ S E+ D +++L G+I+ G
Sbjct: 187 NRTTFVIAHRLS--TIENADRIVVL-EDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 56/242 (23%)
Query: 640 AHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG------ 693
K ++L V T++ G + A+MG +G+GK+TL + G +GEI +G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILEL 73
Query: 694 ---------------YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINS 738
YP V + G +T + +LR A +N+
Sbjct: 74 SPDERARAGIFLAFQYP------VEIPG-----------VTNSD------FLRAA--MNA 108
Query: 739 KTKADCVNHVLKTIELDGIKESLVGIP------GVS-GLSTEQRKRLTIGVELVANPSII 791
+ A + EL E L+G+ V+ G S ++KR I L+ P +
Sbjct: 109 RRGARGILPEFIK-ELKEKAE-LLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLA 166
Query: 792 FMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851
+DEP +GLD A IV + + + GR ++ H + + D++ +L GRI+
Sbjct: 167 ILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLY-DGRIVK 225
Query: 852 SG 853
SG
Sbjct: 226 SG 227
|
Length = 251 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 2e-09
Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 31/225 (13%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQE 699
K+Q L V+ + G + AL+G +GAGKTTLL + G R S G I +G
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRS----GRIIFDGEDITGL 70
Query: 700 -TFVRVS---GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHV------L 749
R Y + P +T+EE+L L + + + + + V L
Sbjct: 71 PPHERARLGIAYVPEGRRIFPRLTVEENLL----LGAYARRDKEAQERDLEEVYELFPRL 126
Query: 750 KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
K + G LS +++ L I L++ P ++ +DEP+ GL + +
Sbjct: 127 KE-----RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 176
Query: 810 RAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
A+K + G + + Q + E D +L+ GRI+ SG
Sbjct: 177 EAIKELRKEGGMTILLVEQNARFALEIADRGYVLEN-GRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 48/197 (24%), Positives = 102/197 (51%), Gaps = 13/197 (6%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG---RKTSGCFKGEIKVNGYPKIQET 700
++++DV+ T+ G + L+G +GAGKTT ++ G R + ++ P +
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP-LHAR 75
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
R GY Q +++ ++L A L++ ++++ + D N +++ ++ +++S
Sbjct: 76 ARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDS 133
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820
+ G S LS +R+R+ I L ANP I +DEP G+D + + R ++++ D+G
Sbjct: 134 M----GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL 188
Query: 821 TIVCTIH--QPSIDIFE 835
++ T H + ++ + E
Sbjct: 189 GVLITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 2e-09
Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 21/217 (9%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFK-GEIKVNGYPKIQET-- 700
L D+ ++ G TAL+G +G+GK+TLL L G + T G G+I V+ K +E
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLR---LAPQINSKTKADCVNHVLKTIELDGI 757
+ G Q E LF L+ PQ K + +E+ G+
Sbjct: 82 VRKKVGVVFQFP--------ESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGL 133
Query: 758 -KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
E P LS Q +R+ I L P ++ +DEPT GLD +A +M+ +++
Sbjct: 134 ADEFWEKSP--FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH 191
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+G+T+V H +D + + + L G II G
Sbjct: 192 QSGQTVVLVTHL--MDDVADYADYVYLLEKGHIISCG 226
|
Length = 288 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-09
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 33/223 (14%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ET 700
++L ++ ++PG ++G SG+GK+TL +L T G++ V+G
Sbjct: 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGVDLAIADPAW 528
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
R G + ++E++ FS +R I HV+ +L G +
Sbjct: 529 LRRQMG-----------VVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAGAHDF 575
Query: 761 LVGIP----------GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
+ +P G LS QR+R+ I LV NP I+ DE T+ LD + A++MR
Sbjct: 576 ISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634
Query: 811 AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
++ + GRT++ H+ + + D +I+L+ G+I SG
Sbjct: 635 NMREIC-RGRTVIIIAHR--LSTVRACDRIIVLEK-GQIAESG 673
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 27/221 (12%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNGYP- 695
+L DV+ T+ G A++G SG+GK+T+L DV +G I ++G
Sbjct: 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILIDGQDI 65
Query: 696 -KI-QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE 753
++ ++ R G Q D + TI ++ + ++ KA ++ +
Sbjct: 66 REVTLDSLRRAIGVVPQ-DTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFP 124
Query: 754 LDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
DG +++VG G+ LS +++R+ I ++ NP I+ +DE T+ LD + A++
Sbjct: 125 -DGY-DTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR 181
Query: 814 NVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+V+ GRT + H+ S I + D++I+LK GRI+ G
Sbjct: 182 DVS-KGRTTIVIAHRLS-TIVNA-DKIIVLKD-GRIVERGT 218
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 20 TGLVTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVG----SRA 75
G++TGE+ NG L++ Q+ + YV Q D+H P +TVRE L FS +G+ R
Sbjct: 59 AGVITGEILINGRPLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRL 117
Query: 76 DILLELSGR 84
I +EL+ +
Sbjct: 118 TIGVELAAK 126
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 34/234 (14%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLL----DVLAGRKTSGCFKGEIKVNGYPK 696
++ Q L V + G + AL+G SG+GK+TLL ++ G K++G I++ G
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGS---HIELLGRTV 71
Query: 697 IQETFVRVSGYCEQTDIHSPHI----------TIEESLFFSA------WLRLAPQINSKT 740
+E R++ ++ ++ +I ++ E++ A W +
Sbjct: 72 QREG--RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQ 129
Query: 741 KADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800
K L+ + G+ VS LS Q++R+ I L+ +I DEP L
Sbjct: 130 K----QRALQALTRVGMVH--FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASL 183
Query: 801 DARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
D +A IVM ++++ G T+V T+HQ +D + E I+ G + Y G
Sbjct: 184 DPESARIVMDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 3e-09
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNGY-- 694
Q + +V ++ G + AL+G SG GKTT L D+ G + +G I ++G
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTG----RILLDGQDI 73
Query: 695 --PKIQE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKT 751
P++ R G Q P +++ +++ A L+LA + + L+
Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRG 131
Query: 752 IEL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
L D +K+ L P +GLS Q++RL I L P I+ MDEPT+ LD + A +
Sbjct: 132 AALWDEVKDRL-KTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED 189
Query: 811 AVKNVADTGRTIVCT--IHQPS 830
+ ++ I+ T +HQ +
Sbjct: 190 LMTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 23/189 (12%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGCFKGEIKVNGYPKIQETFV-- 702
LD+V+ + G + +G +GAGK+T + ++ G G ++V G +Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS---GSVQVCGEDVLQNPKEVQ 74
Query: 703 RVSGYCEQTDIHSP---HITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK- 758
R GY + H+P + + E L F A + K + V + IEL G++
Sbjct: 75 RNIGYLPE---HNPLYLDMYVREYLQFIAGIYGMKGQLLKQR------VEEMIELVGLRP 125
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
E I LS R+R+ + L+ +P ++ +DEPTTGLD + +KN+
Sbjct: 126 EQHKKI---GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K 181
Query: 819 GRTIVCTIH 827
+TI+ + H
Sbjct: 182 DKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 27/204 (13%)
Query: 660 ALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQET------FVRVSGYCEQT 711
A++G +GAGK+TL G + TSG + + G P +E FV +
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPTSG----SVLIRGEPITKENIREVRKFVGLVFQNPDD 89
Query: 712 DIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNH-VLKTIELDGIKESLVGIPGVSGL 770
I SP T+E+ + F IN + V H V + + G++E +P L
Sbjct: 90 QIFSP--TVEQDIAFGP-------INLGLDEETVAHRVSSALHMLGLEELRDRVP--HHL 138
Query: 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQP 829
S ++KR+ I + P ++ +DEPT GLD + ++ + ++ +T G T++ + HQ
Sbjct: 139 SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ- 197
Query: 830 SIDIFESFDELILLKTGGRIIYSG 853
+D+ + I + GRI+ G
Sbjct: 198 -LDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 14/192 (7%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLL---DVLAGRKTSGCFKGEIKVNGYPKIQ 698
Q+L ++ + G + ++G SG+GK+TLL + L + +KVN PK+
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 699 ETFVRV-SGYCEQTDIHSPHITIEESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDG 756
E +R +G Q PH+T E++ F P ++ +K + + + G
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMF------GPLRVRGASKEEAEKQARELLAKVG 125
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
+ E P S LS Q++R+ I L P ++ DEPT+ LD V++ ++++A
Sbjct: 126 LAERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA 183
Query: 817 DTGRTIVCTIHQ 828
+ G T+V H+
Sbjct: 184 EEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-09
Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 13/205 (6%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFV 702
L ++ +L+ G A++G SG+GK+TL ++ G G ++++G Q ETF
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVG--IWPPTSGSVRLDGADLKQWDRETFG 391
Query: 703 RVSGYCEQTDIHSPHITIEESLF-FSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
+ GY Q D+ T+ E++ F +I K V+ ++ + DG +++
Sbjct: 392 KHIGYLPQ-DVELFPGTVAENIARFGENAD-PEKIIEAAKLAGVHELILRLP-DGY-DTV 447
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821
+G PG + LS QR+R+ + L +P ++ +DEP + LD + A+K + G T
Sbjct: 448 IG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGIT 506
Query: 822 IVCTIHQPSIDIFESFDELILLKTG 846
+V H+PS + D++++L+ G
Sbjct: 507 VVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 50/228 (21%), Positives = 87/228 (38%), Gaps = 36/228 (15%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP----KIQE-- 699
L V T++ G + A+MG +G+GK+TL +AG + G I G + E
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75
Query: 700 ---TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
F+ Q P ++ E L + R + + +LK
Sbjct: 76 RAGLFLAF-----QYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKA----- 125
Query: 757 IKESLVGIPGV-------SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
K +L+G+ G S ++KR I + P + +DE +GLD A IV
Sbjct: 126 -KLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA 184
Query: 810 RAVKNVADTGRTIVCTIHQPSIDIFESFDEL----ILLKTGGRIIYSG 853
+ + + R+ + H + + + + + GRI+ SG
Sbjct: 185 EGINRLREPDRSFLIITHYQRL-----LNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 20/216 (9%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQET--F 701
+ L ++ ++ G TAL+G +GAGK+TLL L G +G +KV G E +
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKW 76
Query: 702 VR--VSGYCEQTDIHSPHITIEESLFFSAW-LRLAP-QINSKTKADCVNHVLKTIELDGI 757
VR V + D T+ + + F + L ++ + V LK + +
Sbjct: 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR-----VEEALKAVRMWDF 131
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817
++ LS Q+KR+ I L +P +I +DEP LD R +M + + +
Sbjct: 132 RDK-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN 186
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
G+T++ H +D+ + + +++ GR++ G
Sbjct: 187 QGKTVIVATH--DVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 57/205 (27%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
DDV+ +++ G + AL+G +GAGK+TL+ +L G + S GEI+V+G VR
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS----GEIRVDGKE------VR 69
Query: 704 VSGYCEQTDIHSPH-------------------ITIEESL------FFSAWLRLAPQINS 738
I SP +T+ E++ + Q +
Sbjct: 70 ---------IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRR-QARA 119
Query: 739 KTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798
+ K + L ++ D V+ LS +++R+ I L ++ +DEPT
Sbjct: 120 RIKELSERYGL-PVDPDAK---------VADLSVGEQQRVEILKALYRGARLLILDEPTA 169
Query: 799 GLDARAAAIVMRAVKNVADTGRTIV 823
L + A + ++ +A G+TI+
Sbjct: 170 VLTPQEADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 21/235 (8%)
Query: 627 DTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCF 685
D L++ + L + ++ G +TA++G +GAGK+TL L G K S
Sbjct: 3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS--- 59
Query: 686 KGEIKVNGYP------KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSK 739
G I +G P + + V + D ++ + + F A + ++
Sbjct: 60 SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGA---VNLKLPED 116
Query: 740 TKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799
V++ LK ++ +K+ P LS Q+KR+ I LV P ++ +DEPT G
Sbjct: 117 EVRKRVDNALKRTGIEHLKDK----P-THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAG 171
Query: 800 LDARAAAIVMRAVKNVA-DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
LD + +M+ + + + G TI+ H IDI + + + + GR+I G
Sbjct: 172 LDPMGVSEIMKLLVEMQKELGLTIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 5e-09
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 22/213 (10%)
Query: 661 LMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-ETFVRVSGYCEQTDIHSPHIT 719
L+G SG GKTTLL +LAG + G I ++G +R Q+ PH+T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLT 779
+EE++ F +R P+ K + V L+ ++L+ + LS Q++R+
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPR---VLEALRLVQLEEFADR-----KPHQLSGGQQQRVA 110
Query: 780 IGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFD 838
+ LV P I+ +DEP + LD + + +K + + G T V H + S D
Sbjct: 111 LARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS-D 169
Query: 839 ELILLKTGGRI--------IYSGPLGNHSSRVI 863
+ +++ G+I IY P +R I
Sbjct: 170 RIAIMR-KGKIAQIGTPEEIYEEPANLFVARFI 201
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 21/173 (12%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNG- 693
++DV + P +TA +G SG GK+T+L +V+ G + +GE+ ++G
Sbjct: 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARV----EGEVLLDGE 71
Query: 694 --Y-PKIQETFVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
Y P + VR + G Q P ++I +++ A L+L N K + V L
Sbjct: 72 DLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSL 129
Query: 750 KTIEL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
+ L + +K+ L PG GLS Q++RL I + P ++ MDEP + LD
Sbjct: 130 RGANLWNEVKDRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 5e-09
Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 53/213 (24%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP--KIQETF 701
Q+L +++ L+ G AL+G SG+GK+TLL +L G +GEI ++G P +++
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVSDLEKAL 73
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
+ Q P++ F LR +
Sbjct: 74 SSLISVLNQ----RPYL-------FDTTLR----------------------------NN 94
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821
+G S +R+RL + L+ + I+ +DEPT GLD ++ + V +T
Sbjct: 95 LGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKT 149
Query: 822 IV-CTIHQPSIDIFESFDELILLKTGGRIIYSG 853
++ T H I E D+++ L+ G+II G
Sbjct: 150 LIWITHHLTGI---EHMDKILFLEN-GKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCT 825
S LS Q++R+ I LV P II DEP LD +A VM +K++ G T++
Sbjct: 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVN 204
Query: 826 IHQPSIDI-FESFDELILLKTGGRIIYSGP 854
+HQ +D+ + D +I LK GRI++ GP
Sbjct: 205 LHQ--VDLAKKYADRIIGLK-AGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 7e-09
Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 38/233 (16%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDV--LAGRKTSGCFK-GEIKVNGYPKI 697
H +L + ++PG + A++G SG+GKTTLL L + +G + G+I ++ +
Sbjct: 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL 73
Query: 698 --QETFVRV----SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKT 751
Q+ +R G+ Q PH T+ E++ P I +
Sbjct: 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII------EGPVIVKGEPKE-------- 119
Query: 752 IELDGIKESLVGIPGVSG--------LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
E L+ G++G LS Q++R+ I L P +I DEPT+ LD
Sbjct: 120 -EATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE 178
Query: 804 AAAIVMRAVKNVADTGRTIVCTIHQPSI--DIFESFDELILLKTGGRIIYSGP 854
V+ ++ +A RT+V H+ S D+ D I + GRI+ GP
Sbjct: 179 LVGEVLNTIRQLAQEKRTMVIVTHEMSFARDV---ADRAIFMD-QGRIVEQGP 227
|
Length = 250 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 8e-09
Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 31/233 (13%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG-YPKIQE 699
++L L++++ T + ++G SG+GK+TL+ G S G I+V Y ++
Sbjct: 37 NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK--YGTIQVGDIYIGDKK 94
Query: 700 TFVRVSGYCEQTDIHS--------------PHI-----TIEESLFFSAWLRLAPQINSKT 740
+ I + P TIE+ + F + +K
Sbjct: 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK 154
Query: 741 KADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800
A + G+ +S + GLS Q++R+ I L P I+ DEPT GL
Sbjct: 155 LAK------FYLNKMGLDDSYLERSPF-GLSGGQKRRVAIAGILAIQPEILIFDEPTAGL 207
Query: 801 DARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
D + +M+ + + +T+ H + E DE+I++ G+I+ +G
Sbjct: 208 DPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDK-GKILKTG 258
|
Length = 320 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVR 703
LD+V+ TL+ G + AL+G +G+GK+TLL +AG GEI ++G +
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS--GEILIDGKDIAKLPLEE 70
Query: 704 VS---GYCEQ 710
+ GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 33/172 (19%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNG-----YPK 696
L D++ +++ G L+G SG GKTTLL ++AG R+T+ G I G P
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA----GTIYQGGRDITRLPP 73
Query: 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
+ + G Q+ P++T+ +++ + N V + + LD
Sbjct: 74 QKRDY----GIVFQSYALFPNLTVADNIAYGL-------KNRGMGRAEVAERVAEL-LD- 120
Query: 757 IKESLVGIPGV-----SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
LVG+PG LS Q++R+ + L +P ++ +DEP + LDAR
Sbjct: 121 ----LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 38/256 (14%)
Query: 638 GLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR--KTSG-CFKGEIKVNGY 694
G + + L+ ++ + G ++G +GAGK+TLL+ +AG TSG + V
Sbjct: 14 GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73
Query: 695 PKIQ--ETFVRV-----SGYCEQTDIHSPHITIEESLFFSAWLR-----LAPQINSKTKA 742
+ RV +G P +TIEE+L A R L+ +N + ++
Sbjct: 74 SVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRS 125
Query: 743 DCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA 802
L + L G+ E+ + + LS QR+ L++ + + P I+ +DE T LD
Sbjct: 126 SFRER-LARLGL-GL-ENRLSDR-IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDP 181
Query: 803 RAAAIVMRA-VKNVADTGRTIVCTIH--QPSIDIFESFDELILLKTGGRII--YSGPLGN 857
+ A VM K V + T + H + ++D + LI+L G+I+ +G
Sbjct: 182 KTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDY---GNRLIMLH-SGKIVLDVTGEEKA 237
Query: 858 H--SSRVIEYFEGIPG 871
+I+ FE I G
Sbjct: 238 SLTVLDLIQMFEKIRG 253
|
Length = 263 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 4/170 (2%)
Query: 989 NNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTI 1048
N L L + L + E + R +G+ SPL Y ++
Sbjct: 88 NPNSGYAYYLLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGV-SPLKYLLGKILG 146
Query: 1049 EIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVA 1108
++ LIQ + +++ + G + +++ LG LL +L N A
Sbjct: 147 DLLVGLIQLLIILLL---LFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAA 203
Query: 1109 STLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYG 1158
+ S S F G + P P +P + W++ + P ++GLL YG
Sbjct: 204 ILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 34/221 (15%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG--YPKIQET 700
+ L V T+ PG + AL+G +GAGK+TL+ VL+G KG I +N Y K+
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHK 75
Query: 701 FVRVSG----YCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
G Y E + I +T+ E+L+ R TK C +++ E+
Sbjct: 76 LAAQLGIGIIYQELSVID--ELTVLENLYIG---RHL------TKKVCGVNIIDWREMRV 124
Query: 757 IKESLVGIPG--------VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAA-- 806
++ G V+ LS ++ L I L+ + +I MDEPT+ L +
Sbjct: 125 RAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYL 184
Query: 807 -IVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846
++M ++ G IV H+ + +I D ++K G
Sbjct: 185 FLIMNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 35/227 (15%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGCFKGEIKVNGYPKIQ--ET 700
+L V+ + G +T ++G +G GKTTLL L G G I+++G I
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGED-ITKLPP 69
Query: 701 FVRVS---GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI----- 752
R Y Q P +T+EE+L T + + I
Sbjct: 70 HERARAGIAYVPQGREIFPRLTVEENL--------------LTGLAALPRRSRKIPDEIY 115
Query: 753 ELDGIKESLVGIPGVSG-LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
EL + + ++G G G LS Q+++L I LV P ++ +DEPT G+ + R
Sbjct: 116 ELFPVLKEMLGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRV 173
Query: 812 VKNVADTGRTIVCTIHQPSIDI-FESFDELILLKTGGRIIYSGPLGN 857
++ + G + + Q +D E D +++ GR++ SG
Sbjct: 174 IRRLRAEGGMAILLVEQ-YLDFARELADRYYVME-RGRVVASGAGDE 218
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 29/243 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGY----PKIQE 699
LD+V + G L+G +G+GK+TL+ L G + TSG +I ++G K++
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG----KIIIDGVDITDKKVKL 78
Query: 700 TFVR-----VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL 754
+ +R V Y E TIE+ + F P ++ + N V + + +
Sbjct: 79 SDIRKKVGLVFQYPEYQLFEE---TIEKDIAF------GPINLGLSEEEIENRVKRAMNI 129
Query: 755 DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 814
G+ LS Q++R+ I + P I+ +DEPT GLD + ++ +K
Sbjct: 130 VGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKE 189
Query: 815 VADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIP-GV 872
+ TI+ H S++ + I++ G+ G + +E E I V
Sbjct: 190 LHKEYNMTIILVSH--SMEDVAKLADRIIVMNKGKCELQGTP-REVFKEVETLESIGLAV 246
Query: 873 PQI 875
PQ+
Sbjct: 247 PQV 249
|
Length = 287 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 22/220 (10%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEI----------KVNG 693
Q L D+T G L+G SGAGK++LL VL + G + K
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPS 73
Query: 694 YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE 753
I++ V +Q ++ PH+T++E+L A R+ + A +LK +
Sbjct: 74 DKAIRDLRRNVGMVFQQYNLW-PHLTVQENLI-EAPCRVLGLSKDQALARAEK-LLKRLR 130
Query: 754 LDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
L + P LS Q++R+ I L+ P ++ DEPT LD A ++ +K
Sbjct: 131 LKPYADRY---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIK 185
Query: 814 NVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+A+TG T V H+ +++ ++ G I+ G
Sbjct: 186 ELAETGITQVIVTHE--VEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQE 699
L++V+ + G ++G SG+GK+TL +LAG + +S G I ++G P +
Sbjct: 19 AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS----GSILLDGKPLAPK 74
Query: 700 TFVRVSGYCE----QTDIHS---PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI 752
+ Y D +S P T+ L + + +K+ + + +
Sbjct: 75 KRAKAF-YRPVQMVFQDPYSSLNPRRTVGRI------LSEPLRPHGLSKS--QQRIAELL 125
Query: 753 ELDGIKES-LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA 802
+ G+ S L P LS QR+R+ I L+ P ++ +DEPT+ LD
Sbjct: 126 DQVGLPPSFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP----- 695
H+L +L V ++ G AL+G SG+GK+TLL +LAG GE+ + G P
Sbjct: 21 HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPLHQMD 78
Query: 696 KIQETFVRVS--GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE 753
+ +R G+ Q+ + P + E++ A LR S+ A +E
Sbjct: 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGA------KALLE 132
Query: 754 LDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
G+ + L +P + LS +++R+ + P ++F DEPT LD
Sbjct: 133 QLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 34/230 (14%)
Query: 656 GVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYP-KIQETFVRVSGYCEQ 710
G + +MG+SG+GK+T + +L T+G GE + P +++E + G Q
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78
Query: 711 TDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG- 769
PH+TI ++ L P+ K KA L+ +K LVG+
Sbjct: 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKA-----------LELLK--LVGLEEYEHR 125
Query: 770 ----LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVC 824
LS ++R+ + L A P I+ MDE + LD + +K + T +TIV
Sbjct: 126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF 185
Query: 825 TIHQPSIDIFESF---DELILLKTGGRIIYSGP---LGNHSSRVIEYFEG 868
H D+ E+ D ++++K G + P L N ++ +E F G
Sbjct: 186 ITH----DLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIG 231
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 5e-08
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 31/227 (13%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDV---LAGRKTSGCFKGEIKVNGYPKIQET 700
++LD V + +TALMG SG+GK+TLL V L GE+ ++G +
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 701 FVRVSGYCE---QTDIHSPHITIEESLFFSAWLRLAPQIN--SKTKADCVNHVLKTIE-- 753
+ + + Q P+++I E+ + L ++N K+K + V +E
Sbjct: 77 VIELRRRVQMVFQIPNPIPNLSIFEN------VALGLKLNRLVKSKKELQERVRWALEKA 130
Query: 754 --LDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD----ARAAAI 807
D +K+ L P LS Q++RL I L P ++ DEPT LD A+ ++
Sbjct: 131 QLWDEVKDRL-DAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL 188
Query: 808 VMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+ K++ TIV H P + + G+I+ GP
Sbjct: 189 FLELKKDM-----TIVLVTHFPQQA--ARISDYVAFLYKGQIVEWGP 228
|
Length = 250 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 5e-08
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
LL++V+ TL PG L+G +GAGK+TLL +LAG GE+ ++
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGE--LEPDSGEVTRPKGLRV------- 68
Query: 705 SGYCEQTDIHSPHITIEESLF--FSAWLRLAPQIN--SKTKADCVNHVLKTI-----ELD 755
GY Q P T+ + + F L ++ AD + +L + ELD
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 756 G------IKESL--VGIPG----VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
G +E+L +G P VS LS R+R+ + L+ P ++ +DEPT LD
Sbjct: 128 GWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLE 187
Query: 804 A 804
+
Sbjct: 188 S 188
|
Length = 530 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 26/198 (13%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSG--CFKGEIKVNGY 694
Q L + + +TAL+G SG GK+TLL D++ G K +G GE + Y
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE---DIY 73
Query: 695 PKIQETFVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE 753
I +R+ G Q P ++I E++ + LR + K + V L+
Sbjct: 74 GNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAA 130
Query: 754 L-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV 812
L D +K+ L GLS Q++RL I + P +I MDEPT+ LD I +
Sbjct: 131 LWDEVKDRL-KSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALD----PIATHKI 184
Query: 813 KNVADTGR---TIVCTIH 827
+ + + + TIV H
Sbjct: 185 EELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-08
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 18/133 (13%)
Query: 670 TTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS----GYCEQTDIHSPHITIEESLF 725
+TLL ++ G G I ++G + ++ G Q P +T+ E+LF
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 726 FSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELV 785
F K L+ + L + V LS Q++R+ I L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 786 ANPSIIFMDEPTT 798
P ++ +DEPT
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 8e-08
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 46/216 (21%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVR 703
++L V T++ G + ALMG +G+GK+TL + G +GEI G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 704 VSGYCEQTDIHSPHITIEE----SLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
DI + EE +F LA Q E+ G+K
Sbjct: 64 -------EDI--TDLPPEERARLGIF------LAFQY--------------PPEIPGVKN 94
Query: 760 SLVGIPGVS-GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
+ + V+ G S ++KR I L+ P + +DEP +GLD A +V + + +
Sbjct: 95 ADF-LRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
G++++ H + + D + +L GRI+ SG
Sbjct: 154 GKSVLIITHYQRLLDYIKPDRVHVLY-DGRIVKSGD 188
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 9e-08
Identities = 49/201 (24%), Positives = 95/201 (47%), Gaps = 24/201 (11%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVL--AGRKTSGCF-------------KGE 688
++L V+ G + +++G SG+GK+T L + + + G G+
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 689 IKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-QINSKTKADCVNH 747
+KV +++ R++ + ++ S H+T+ E++ AP Q+ +K +
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQHFNLWS-HMTVLENVM------EAPIQVLGLSKQEARER 131
Query: 748 VLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807
+K + GI E G V LS Q++R++I L P ++ DEPT+ LD
Sbjct: 132 AVKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 808 VMRAVKNVADTGRTIVCTIHQ 828
V+R ++ +A+ G+T+V H+
Sbjct: 191 VLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 9e-08
Identities = 47/200 (23%), Positives = 97/200 (48%), Gaps = 21/200 (10%)
Query: 637 CGLAHKL---QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKV 691
L+ + ++++ V+ +++ G + L+G +GAGKTT ++ G + SG +I +
Sbjct: 4 ENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG----KILL 59
Query: 692 NGYPKIQETFVRVS----GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNH 747
+G + + + GY Q +T+EE++ A L + ++ K + + +
Sbjct: 60 DGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENI--LAVLEIRG-LSKKEREEKLEE 116
Query: 748 VLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807
+L+ + +++S S LS +R+R+ I L NP + +DEP G+D A
Sbjct: 117 LLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171
Query: 808 VMRAVKNVADTGRTIVCTIH 827
+ + +K + D G ++ T H
Sbjct: 172 IQKIIKILKDRGIGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 1e-07
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695
LLDDV+ TLRPG + A++G +GAGK+TLL L+G + GE+++NG P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS--GEVRLNGRP 65
|
Length = 258 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 34/218 (15%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQE 699
+ +L +T TL PG + AL+G SG+GK+T+ +L + T G++ ++G P
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG----GQVLLDGVP---- 544
Query: 700 TFVRVSGYCEQTDIHSPH----ITIEESLFFSAWLR--LAPQINSKTKADCVNHVLKTIE 753
Q D H H + +E + FS +R +A + + +
Sbjct: 545 --------LVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANA 596
Query: 754 LDGIKESLVGIPGVSG-----LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIV 808
D I E G G LS Q++R+ I LV P ++ +DE T+ LDA ++
Sbjct: 597 HDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLL 656
Query: 809 MRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846
+ RT++ H+ S E D++++LK G
Sbjct: 657 QESRSR---ASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 15/216 (6%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETF 701
+L + +T L+G +G GK+TL L+G R G + K Y K
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 702 VR--VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
+R V+ + + + I+ + FS LR + V+ L ++ +
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAFS--LR-NLGVPEAEITRRVDEALTLVDAQHFRH 131
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG 819
+ LS Q+KR+ I LV + +DEPT GLD ++ ++ + G
Sbjct: 132 Q-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 820 RTIVCTIHQPSID-IFESFDELILLKTGGRIIYSGP 854
++ + H ID I+E D + +L+ G + + P
Sbjct: 187 NHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 15/216 (6%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPKI 697
+ +L +V+ ++ G L+G SG GK+TL +L G + G F+G+ K
Sbjct: 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82
Query: 698 QETFVRVSGYCEQTDIHS--PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD 755
+ F R Q + P +T+ + + LR ++ + + +L + L
Sbjct: 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLR 140
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
E +P LS Q +R+ I L P +I +DE + LD A+++ ++ +
Sbjct: 141 --SEDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196
Query: 816 -ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850
G + H + + +SF + + + G+I+
Sbjct: 197 QQAFGTAYLFITH--DLRLVQSFCQRVAVMDKGQIV 230
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 19/163 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY-----PKIQET 700
+DDV+ T+ G + AL+G SG GK+TLL +LAG + G+I ++G P Q
Sbjct: 35 VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT--AGQIMLDGVDLSHVPPYQ-- 90
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
R Q+ PH+T+E+++ F + + KA+ + V + + L ++E
Sbjct: 91 --RPINMMFQSYALFPHMTVEQNIAFGL------KQDKLPKAEIASRVNEMLGLVHMQEF 142
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
P LS QR+R+ + L P ++ +DEP LD +
Sbjct: 143 AKRKP--HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 26/212 (12%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
LD+V +RP + ALMG +GAGK+TLL L G +K S G I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDS----GSILFQG----KEIDFK 65
Query: 704 VSGYCEQTDIHSPH----ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
S + I H + ++ S+ + WL P TK V+ + I +
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP-----TKGMFVDQDKMYRDTKAIFD 120
Query: 760 SLVGI-----PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 814
L I V+ LS Q + + I N I+ MDEPT+ L + + ++
Sbjct: 121 EL-DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179
Query: 815 VADTGRTIVCTIHQPSIDIFESFDELILLKTG 846
+ + G IV H+ +IF+ DE+ +L+ G
Sbjct: 180 LKERGCGIVYISHKME-EIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 31/243 (12%)
Query: 621 DLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR- 679
D YS TP+E + LD+++ L G AL+G +G+GK+TL+
Sbjct: 9 DYIYSPGTPMEK-----------KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL 57
Query: 680 KTSGCFKGEIKVNGYPKIQETF--------VRVSGYCEQTDIHSPHITIEESLFFSAWLR 731
K S G I + GY ET +VS + + T+ + + F
Sbjct: 58 KPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEF----- 109
Query: 732 LAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSII 791
P+ ++ + LK ++ G+ E L+ LS Q +R+ I + P I+
Sbjct: 110 -GPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFE-LSGGQMRRVAIAGVMAYEPEIL 167
Query: 792 FMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851
+DEP GLD +M+ K+ G T++ H D+ E D++++L+ G I +
Sbjct: 168 CLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKH 226
Query: 852 SGP 854
+ P
Sbjct: 227 ASP 229
|
Length = 287 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 50/210 (23%)
Query: 20 TGLV---TGEVSYNGYKLE---EFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73
TG + +G NGY + + Q L Y Q+D E+TVRE L F
Sbjct: 49 TGELRPTSGTAYINGYSIRTDRKAARQSLG-YCPQFDALFDELTVREHLRFY-------- 99
Query: 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGD 133
AR+ + + + + + L++LGL A+
Sbjct: 100 --------------ARL------------KGLPKSEIKEEVELLLRVLGLTDKANKRART 133
Query: 134 AIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATI 193
+SGG KR+L+ L+G + +D+ T+GLD ++ I + + +I
Sbjct: 134 -----LSGGMKRKLSLAI-ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSI 185
Query: 194 LISLLQPSPETFHLFDDIILMAEGKILYHG 223
+++ E L D I +M++GK+ G
Sbjct: 186 ILTTHSMD-EAEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ------ 698
+L +V+ ++ G + A++G SG+GK+TLL +L G T G++ NG P +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT--SGDVIFNGQPMSKLSSAAK 81
Query: 699 -ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
E + G+ Q P T E++ + I K A+ + L+ + G+
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENV------AMPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAA 805
+ P S LS +R+R+ I LV NP ++ DEPT LDAR A
Sbjct: 136 EHRANHRP--SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-07
Identities = 59/268 (22%), Positives = 102/268 (38%), Gaps = 41/268 (15%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVN-------GYP 695
++L +++ T+ G + ++G SGAGK+ L+ VL G G I + GY
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72
Query: 696 KIQETFVRVSGYCEQT------DIHSP----------HITI---------EESLFFSAWL 730
+ C T D + I I + L
Sbjct: 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVL 132
Query: 731 RLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSI 790
+I + K + V + IE+ + + I LS +++R+ + +L P +
Sbjct: 133 EALEEIGYEGK-EAVGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKEPFL 189
Query: 791 IFMDEPTTGLDARAAAIVMRAVKN-VADTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849
DEPT LD + A +V A++ V +G ++V T H P + I + D+ I L+ G
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENGEIK 248
Query: 850 IYSGPLGNHSSRVIEYFEGIPGVPQIRN 877
G V + EG+ V +
Sbjct: 249 ----EEGTPDEVVAVFMEGVSEVEKECE 272
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 33/204 (16%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCF----KGEIKVNGYPKIQ 698
+++L ++ + G + A++G SG+GK+TL+++L GC G +V G
Sbjct: 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL------GCLDKPTSGTYRVAGQDVAT 74
Query: 699 -----------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNH 747
E F G+ Q H+T +++ A + +A
Sbjct: 75 LDADALAQLRREHF----GFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRA---QE 127
Query: 748 VLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807
+L+ + G+++ + P S LS Q++R++I L+ +I DEPT LD+ +
Sbjct: 128 LLQRL---GLEDRVEYQP--SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEE 182
Query: 808 VMRAVKNVADTGRTIVCTIHQPSI 831
VM + + D G T++ H P +
Sbjct: 183 VMAILHQLRDRGHTVIIVTHDPQV 206
|
Length = 648 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 51/182 (28%), Positives = 75/182 (41%), Gaps = 45/182 (24%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR---KTSGC-FKGEIKVNGYPKIQE 699
L D+ + +TAL+G SG GK+TLL L R G +GE+ ++G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGEVLLDG------ 73
Query: 700 TFVRVSGYCEQTDIHSPHITIEE-----------------SLF--FSAWLRLAPQINSKT 740
+I+ P + + E S++ + LRL I K
Sbjct: 74 -----------KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLH-GIKDKE 121
Query: 741 KADCVNHVLKTIEL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799
+ V LK L D +K+ L GLS Q++RL I L P ++ MDEPT+
Sbjct: 122 LDEIVESSLKKAALWDEVKDRLHKSAL--GLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 800 LD 801
LD
Sbjct: 180 LD 181
|
Length = 253 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 65/244 (26%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQE 699
K+ L DV+ ++ G + ++G SGAGK+TL+ + G R TS G + V+G
Sbjct: 17 KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS----GSVLVDG------ 66
Query: 700 TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQ-----------INSKTKADCVNHV 748
TD+ +L LR A + ++S+T + V
Sbjct: 67 -----------TDL---------TLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP 106
Query: 749 LKTIELDGIKES-----------LVGIPG-----VSGLSTEQRKRLTIGVELVANPSIIF 792
L E+ G+ ++ LVG+ + LS Q++R+ I L NP ++
Sbjct: 107 L---EIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLL 163
Query: 793 MDEPTTGLDARAAAIVMRAVKNV-ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851
DE T+ LD ++ ++++ + G TIV H+ +++ + + + + G ++
Sbjct: 164 CDEATSALDPETTQSILALLRDINRELGLTIVLITHE--MEVVKRICDRVAVMEKGEVVE 221
Query: 852 SGPL 855
G +
Sbjct: 222 EGTV 225
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 57/234 (24%), Positives = 103/234 (44%), Gaps = 47/234 (20%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFK-GEIKVNGYPKIQET 700
+D+V+ ++ G + ++G SGAGKTTL ++AG TSG + G+ V+ +
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 701 FVRVSGYC----EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI--EL 754
R Y ++ D++ PH T+ ++L + L L P ++ KA LK + +
Sbjct: 360 RGRAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLEL-PDELARMKA---VITLKMVGFDE 414
Query: 755 DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 814
+ +E L P LS +R R+ + L+ P I+ +DEPT +D I V +
Sbjct: 415 EKAEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTH 468
Query: 815 VADTGRTIVCTIHQPSIDIFESF--------------DELILLKTGGRIIYSGP 854
+I + ++ ++F D L++ G+I+ G
Sbjct: 469 ----------SILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR-DGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGC------FKGEIKVNGYP 695
+L D++ + PG +TAL+G +GAGK+TLL LAG T G G++ +NG P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72
|
Length = 272 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 3e-07
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 45/232 (19%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L ++ ++ G AL+G +G GK+TLL +L R +GEI +NG P ++
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-RAWD-PQQGEILLNGQP--------IA 405
Query: 706 GYCEQTDIHS-------PHITIEESLFFSAWLR----LA-PQINSKTKADCVNHVLKTIE 753
Y E + H+ FSA LR LA P + + + VL+ +
Sbjct: 406 DYSEAALRQAISVVSQRVHL-------FSATLRDNLLLAAPNASDEALIE----VLQQVG 454
Query: 754 LDGIKESLVGIP---GVSG--LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIV 808
L+ + E G+ G G LS +++RL I L+ + ++ +DEPT GLDA +
Sbjct: 455 LEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQI 514
Query: 809 MRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSS 860
+ + A +T++ H+ + E FD + ++ G+II G H
Sbjct: 515 LELLAEHA-QNKTVLMITHR--LTGLEQFDRICVMD-NGQIIEQ---GTHQE 559
|
Length = 574 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 27/193 (13%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP--KIQET 700
L ++ TL G L + G +GAGKT+LL +LAG R + GE+ G P + ++
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA----GEVLWQGEPIRRQRDE 71
Query: 701 FVRVSGYCEQTDIHSPHI----TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
+ + Y H P I T E+L F +++ + + L + L G
Sbjct: 72 YHQDLLYLG----HQPGIKTELTALENLRFYQ------RLHGPGDDEALWEALAQVGLAG 121
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
++ V LS Q++R+ + + + +DEP T +D + A + + A
Sbjct: 122 FEDVPVRQ-----LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176
Query: 817 DTGRTIVCTIHQP 829
+ G ++ T HQ
Sbjct: 177 EQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVL--AGRKTSGC-FKGEIKVNGY---- 694
+ + L ++ + +TAL+G SG GK+TLL L G +G++ +G
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 695 PKIQETFVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKAD-CVNHVLKTI 752
KI +R G Q P ++I +++ + RL I K + D V LK
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYG--PRLH-GIKDKKELDEIVEESLKKA 128
Query: 753 EL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
L D +K+ L GLS Q++RL I L P ++ +DEPT+ LD A +
Sbjct: 129 ALWDEVKDRLHDSA--LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL 186
Query: 812 VKNVADTGRTIVCTIH 827
++ + TIV H
Sbjct: 187 IQELKKK-YTIVIVTH 201
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 4e-07
Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 40/213 (18%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFV 702
L D+ + G L A++G G+GK++LL L G K S G + V G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS----GSVSVPG--------- 66
Query: 703 RVSGYCEQTDIHSPHI---TIEESLFFSA-----WLRLAPQINSKTKADCVNHVLKTIEL 754
++ Y Q P I TI E++ F KA + L+ +
Sbjct: 67 SIA-YVSQE----PWIQNGTIRENILFGKPFDEERYEKV------IKACALEPDLEILP- 114
Query: 755 DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR-AAAIVMRAVK 813
DG + +G G++ LS Q++R+++ + ++ I +D+P + +DA I +
Sbjct: 115 DGD-LTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCIL 172
Query: 814 NVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846
+ +T + HQ + + D++++L G
Sbjct: 173 GLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 33/210 (15%)
Query: 641 HK----LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG--- 693
HK ++L V+ G + +++G SG+GK+T L + + G I+VNG
Sbjct: 13 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--AGSIRVNGEEI 70
Query: 694 --------------YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-QINS 738
++Q R+ + ++ S H+T+ E++ AP +
Sbjct: 71 RLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWS-HMTVLENVI------EAPVHVLG 123
Query: 739 KTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798
+KA+ + K + GI E P + LS Q++R+ I L P ++ DEPT+
Sbjct: 124 VSKAEAIERAEKYLAKVGIAEKADAYP--AHLSGGQQQRVAIARALAMEPEVMLFDEPTS 181
Query: 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQ 828
LD V++ ++++A+ GRT+V H+
Sbjct: 182 ALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 34/208 (16%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETF 701
+L +L +V+ T+ G AL G SGAGK+TLL L G I V
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA--NYLPDSGRILVRHEGAW---- 73
Query: 702 VRVSGYCEQTDI--HSPHITIE----ESLFFSAWLRLAPQI------------NSKTKAD 743
D+ SP +E + S +LR+ P++ +
Sbjct: 74 ---------VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREA 124
Query: 744 CVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
+ + I E L +P + S +++R+ I +A+ I+ +DEPT LDA
Sbjct: 125 ARARARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 804 AAAIVMRAVKNVADTGRTIVCTIHQPSI 831
+V+ + G ++ H +
Sbjct: 184 NRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 5e-07
Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 28/219 (12%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETF-- 701
+D + T +TA +G +GAGKTT L +L G TSG + G I+
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV-----LVGGKDIETNLDA 1000
Query: 702 VRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
VR S G C Q +I H+T+ E + F A Q+ ++ + + +E G+
Sbjct: 1001 VRQSLGMCPQHNILFHHLTVAEHILFYA------QLKGRSWEEAQLEMEAMLEDTGLHHK 1054
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA---D 817
LS +++L++ + V + ++ +DEPT+G+D + R++ ++
Sbjct: 1055 RN--EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS----RRSIWDLLLKYR 1108
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG-PL 855
+GRTI+ + H +D + + I + + GR+ SG PL
Sbjct: 1109 SGRTIIMSTHH--MDEADLLGDRIAIISQGRLYCSGTPL 1145
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 20/192 (10%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP--KIQETF 701
+L ++ T+ PG AL+G SG GK+T++ +L + GEI ++G + +
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL--ERFYDPTSGEILLDGVDIRDLNLRW 74
Query: 702 VRVS-GYCEQTDIHSPHI---TIEESLFFSAWLRLAPQINSKTK-ADCVNHVLKTIEL-D 755
+R G Q P + TI E++ + ++ K A+ + + + L D
Sbjct: 75 LRSQIGLVSQ----EPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFI---MSLPD 127
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
G ++LVG S LS Q++R+ I L+ NP I+ +DE T+ LDA + +V A+
Sbjct: 128 GY-DTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA 185
Query: 816 ADTGRTIVCTIH 827
GRT + H
Sbjct: 186 M-KGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 26/217 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFV 702
L ++G +R G + L+G +GAGK+TLL +AG + G I+ G P
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELA 71
Query: 703 RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-DGIKESL 761
R Y Q +P W L KT+ + +N V + L D + S
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRST 123
Query: 762 VGIPGVSGLSTEQRKRLT---IGVELVANPS--IIFMDEPTTGLDARAAAIVMRAVKNVA 816
+ G QR RL + + ANP+ ++ +DEP LD + + R + +
Sbjct: 124 NQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
G IV + H + LLK G+++ SG
Sbjct: 180 QQGLAIVMSSHDLN-HTLRHAHRAWLLK-RGKLLASG 214
|
Length = 248 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 5e-07
Identities = 52/230 (22%), Positives = 101/230 (43%), Gaps = 41/230 (17%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L +++ +++PG ++G +G+GK++L +LA + G I ++G I + +
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGSILIDGVD-ISKIGLH-- 74
Query: 706 GYCEQTDIHSPHITI--EESLFFSAWLR--LAPQINSKTKADCVNHVLKTIELDGIKESL 761
D+ S I+I ++ + FS +R L P + + + L+ + L ESL
Sbjct: 75 ------DLRS-RISIIPQDPVLFSGTIRSNLDP-FGEYSDEE-LWQALERVGLKEFVESL 125
Query: 762 VG------IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
G G LS QR+ L + L+ I+ +DE T +D A++ + ++
Sbjct: 126 PGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE- 184
Query: 816 ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEY 865
A T++ H+ +D D +++L G RV+E+
Sbjct: 185 AFKDCTVLTIAHR--LDTIIDSDRILVLDKG--------------RVVEF 218
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA-DTGRTIVCTIHQ 828
+S Q +++ I L NP II +DEPT GLD ++ VMR +K++ D +TI+ H
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205
Query: 829 PSIDIFESFDELILLKTGGRIIYSGP--LGNHSSRVIEYFEGIPGVPQIRNNYNPATWML 886
+ ++ DE+I++K G + + P L ++ ++ G+P + Q++ ++
Sbjct: 206 MN-EVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLPEIVQLQYDFEQKYQTK 264
Query: 887 EVTSASTEAELGLDFSQIYED 907
A TE E F +Y++
Sbjct: 265 LKDIALTEEE----FVSLYKE 281
|
Length = 286 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-07
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 28/163 (17%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR--KTSGCFKGEIKVNGYPKIQE 699
LL D++ + G A++G +GAGK+TLL +LAG SG K V
Sbjct: 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVK------- 386
Query: 700 TFVRVSGYCEQTDIHSPHITIEESLFFSAWLR-LAPQINSKTKADCVNHVLKTIELDGIK 758
GY +Q H + ++++ L P + + V + G
Sbjct: 387 -----IGYFDQ---HRDELDPDKTVL--EELSEGFPDGDEQ-------EVRAYLGRFGFT 429
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
P V LS ++ RL + L+ P+++ +DEPT LD
Sbjct: 430 GEDQEKP-VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 7e-07
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 16/197 (8%)
Query: 638 GLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVL--AGRKTSGC-FKGEIKVNG- 693
G A K +LD V+ +T+LMG +G+GKTT L L K SG + G++ + G
Sbjct: 30 GFAGK-TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGR 88
Query: 694 ----YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
Y + E F R G Q P ++ L +L P+ + A L
Sbjct: 89 SIFNYRDVLE-FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQAR---L 144
Query: 750 KTIEL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIV 808
+ L D +K+ L P LS Q++ L + L NP ++ +DEPT+ LD +
Sbjct: 145 TEVGLWDAVKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI 202
Query: 809 MRAVKNVADTGRTIVCT 825
++++AD I+ T
Sbjct: 203 EEFIRSLADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 8e-07
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 23/150 (15%)
Query: 659 TALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG---YPKIQETFV----RVSGYCEQT 711
TA+ G SGAGKT+L++ ++G KG I +NG + + + R GY Q
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQD 84
Query: 712 DIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771
PH + +L + + A K + L GI+ L P LS
Sbjct: 85 ARLFPHYKVRGNLRYG--------MAKSMVA----QFDKIVALLGIEPLLDRYP--GSLS 130
Query: 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
+++R+ IG L+ P ++ MDEP LD
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 68/270 (25%), Positives = 103/270 (38%), Gaps = 83/270 (30%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLL----------------------------- 673
Q LDDV+ + +TA++G SG GK+T L
Sbjct: 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111
Query: 674 --DVLAGRKTSG-CFKGEIKVNGYPK-IQETFV---RVSGYCEQTDIHSPHITIEESLFF 726
D +A R+ G F+ K N +PK I + ++ GY D +EESL
Sbjct: 112 DVDPVALRRRIGMVFQ---KPNPFPKSIYDNVAYGLKIQGYDGDIDE-----RVEESLRR 163
Query: 727 SA-WLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELV 785
+A W D V L + LD LS Q++RL I +
Sbjct: 164 AALW-------------DEVKDQLDSSGLD--------------LSGGQQQRLCIARAIA 196
Query: 786 ANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIH--QPSIDIFESFDELILL 843
+P +I MDEP + LD A + + ++ +A+ T+V H Q + I D+ +
Sbjct: 197 PDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQAARI---SDKTAVF 252
Query: 844 KTGGRIIYSGPLGN-----HSSRVIEYFEG 868
TGG ++ S RV +Y G
Sbjct: 253 LTGGELVEFDDTDKIFENPESQRVEDYITG 282
|
Length = 285 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 9e-07
Identities = 59/245 (24%), Positives = 93/245 (37%), Gaps = 41/245 (16%)
Query: 638 GLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697
L +L+ LD+V+ + G A++G +G+GKTT ++ L E K
Sbjct: 15 KLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE-KN 73
Query: 698 QETFVRVSGYCEQTDIHSPHI---------------------------TIEESLFFSAWL 730
++ E+ I TIE+ + F
Sbjct: 74 KKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS 133
Query: 731 RLAPQINSKTKADCVNHVLKTIELDGIKES-LVGIPGVSGLSTEQRKRLTIGVELVANPS 789
+ +K +A K IEL G+ ES L P LS Q++R+ + L P
Sbjct: 134 MGVSKEEAKKRA------AKYIELVGLDESYLQRSP--FELSGGQKRRVALAGILAMEPD 185
Query: 790 IIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSID-IFESFDELILLKTGGR 848
+ DEPT GLD + ++ N+ G+TI+ H +D + E I K G+
Sbjct: 186 FLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH--DLDNVLEWTKRTIFFKD-GK 242
Query: 849 IIYSG 853
II G
Sbjct: 243 IIKDG 247
|
Length = 305 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 117 NLKILGLDICADTLVGDAIRRGI------SGGQKRRLTTGREMLVGPIKAMFMDKITNGL 170
+ I G DI L +RR I SGGQ++R+ R +L+ P + +D+ T+GL
Sbjct: 55 EILIDGKDIAKLPLE--ELRRRIGYVPQLSGGQRQRVALARALLLNP-DLLLLDEPTSGL 111
Query: 171 DISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGK 218
D ++ +++ L+ LA T++I P D +I++ +GK
Sbjct: 112 DPASRERLLELLRELA-EEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 1e-06
Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 47/203 (23%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYPKIQETFVRV 704
+ DV+ T+R G + + G+ GAG+T L L G R S GEI ++G
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASS---GEILLDG----------- 320
Query: 705 SGYCEQTDIHSPH---------IT-------------IEESLFFSAWLRLAPQ--INSKT 740
+ I SP + I E++ ++ R + + I+ +
Sbjct: 321 ----KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRK 376
Query: 741 KADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800
+ ++ + IK P + LS ++++ + L +P ++ +DEPT G+
Sbjct: 377 ERALAERYIRRLR---IKTPSPEQP-IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432
Query: 801 DARAAAIVMRAVKNVADTGRTIV 823
D A A + R ++ +A G+ I+
Sbjct: 433 DVGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 29/192 (15%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK----IQETF 701
LD+V+ +R G + +L G +GAGK+TL+ VL+G G ++GEI G I++T
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDT- 79
Query: 702 VRVSGYCEQTD---IHS-----PHITIEESLFFSAWLRLAPQIN-SKTKADCVNHVLKTI 752
E+ IH +++ E++F + ++ +L +
Sbjct: 80 -------ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQK-LLAQL 131
Query: 753 ELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV 812
+LD I P V L Q++ + I L ++ +DEPT L A+++ +
Sbjct: 132 KLD-IN---PATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDII 186
Query: 813 KNVADTGRTIVC 824
+++ G I C
Sbjct: 187 RDLKAHG--IAC 196
|
Length = 506 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 23/222 (10%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTT----LLDVLAG--RKTSGCFKGEIKVNGYPKIQ 698
L+ D+ +L+ G + AL+G SG+GK+ +L +L +TSG EI ++G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSG----EILLDGRP-LL 55
Query: 699 ETFVR--VSGYCEQTDIHS--PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL 754
+R Q + P T+ + LR +++ + +A + L+ + L
Sbjct: 56 PLSIRGRHIATIMQNPRTAFNPLFTMGNHAIET--LRSLGKLSKQARALIL-EALEAVGL 112
Query: 755 DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 814
+E L P LS +R+ I + L+ P + DEPTT LD A V++ ++
Sbjct: 113 PDPEEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 815 -VADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855
G I+ H + + DE+ ++ GRI+ G +
Sbjct: 171 LRQLFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 46/240 (19%), Positives = 85/240 (35%), Gaps = 54/240 (22%)
Query: 24 TGEVSYNGYKLEEFVPQKLSAYVSQ---YDLHIPEMTVRETLDFSTYCQGVGSRADILLE 80
+GE+ G + + + YV Q D P +TV++ + Y +
Sbjct: 58 SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRY-----GKKGWFRR 111
Query: 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGIS 140
L+ +++E V L+ +G++ D +G+ +S
Sbjct: 112 LNKKDKEK----------------VDEA---------LERVGMEDLRDRQIGE-----LS 141
Query: 141 GGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQP 200
GGQK+R+ R L + +D+ G+D++ +I L+ L T+L+
Sbjct: 142 GGQKQRVLLAR-ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-EGKTVLMVTHDL 199
Query: 201 SPETFHLFDDIILMAEGKILYHGPRESVL---EFFESCGFRCPDRKAVISRKDQAQYWFH 257
FD +I + ++ GP E VL ++ G A Y H
Sbjct: 200 GL-VMAYFDRVICLN-RHLIASGPPEEVLTEENLEKAFGGS--------LAHALAGYRHH 249
|
Length = 254 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 51/218 (23%), Positives = 100/218 (45%), Gaps = 11/218 (5%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDV--LAGRKTSGCFKGEIKVNGYPKIQE 699
+Q L++V+ + G + ++G SGAGK+TL+ L R TSG + V+G
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG----SVIVDGQDLTTL 72
Query: 700 TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
+ ++ Q + H + S + L ++++ K + V + + L G+ +
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD 132
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT- 818
P S LS Q++R+ I L +NP ++ DE T+ LD ++ +K +
Sbjct: 133 KHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL 190
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856
G TI+ H+ +D+ + + + + + G +I G +
Sbjct: 191 GLTILLITHE--MDVVKRICDCVAVISNGELIEQGTVS 226
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 33/203 (16%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNGYP 695
L ++ + + A +G SG GK+T L D++ + +GEI+++G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGR- 70
Query: 696 KIQETFVRVS------GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
I + V+V G Q P +I E++ + LR+ ++ V L
Sbjct: 71 NIYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETL 127
Query: 750 KTIEL-----DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARA 804
K L D +KES LS Q++RL I + +PS++ MDEP + LD +
Sbjct: 128 KGAALWDEVKDKLKES------AFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181
Query: 805 AAIVMRAVKNVADTGRTIVCTIH 827
A V + + TIV H
Sbjct: 182 TAKVEELIHELKKD-YTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 42/185 (22%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
LD + +RPG L G +GAGK+TL+ +L+G G + GEI +G P ++ + +R +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSP-LKASNIRDT 75
Query: 706 GYCEQTDIHS-----PHITIEESLFFSAWLRL-APQINSKTKADCVNHVLKTIELDGIKE 759
IH P +++ E++F + L ++ ++L+ ++LD
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV 135
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG 819
+ V Q++ + I L ++ +DEP++ L + I++ ++++ G
Sbjct: 136 TR----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHG 191
Query: 820 RTIVC 824
+ C
Sbjct: 192 --VAC 194
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 44/194 (22%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP------ 695
+ +DDV+ +LR G + + G+ GAG+T L+ L G G F+G + +NG P
Sbjct: 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNP 330
Query: 696 --KIQETFVRVSGYCEQTDIHS--PHITIEESLFFSAWLRLA--PQINSKTKADCVNHVL 749
I+ V E H P + + +++ S +I++ + + +
Sbjct: 331 AQAIRAGIAMVP---EDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAI 387
Query: 750 KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
+ +++ K + +P + LS +++ + L+ NP ++ +DEPT G+D A +
Sbjct: 388 QRLKV---KTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIY 443
Query: 810 RAVKNVADTGRTIV 823
+ + +A G I+
Sbjct: 444 KLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 31/203 (15%)
Query: 613 QPITMVFQDLQ--YSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKT 670
P+ + +DL+ + I +RR L+ +D ++ TLR G L+G SG+GK+
Sbjct: 273 APVLLEVEDLRVWFPIKGGF-LRRT----VDHLRAVDGISLTLRRGQTLGLVGESGSGKS 327
Query: 671 TLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDI--------HSPHIT--- 719
TL L S +GEI+ +G + + + + SP +T
Sbjct: 328 TLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ 384
Query: 720 -IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRL 778
IEE L P++++ + V L+ + LD + P S QR+R+
Sbjct: 385 IIEEGLRV-----HEPKLSAAERDQRVIEALEEVGLDP--ATRNRYP--HEFSGGQRQRI 435
Query: 779 TIGVELVANPSIIFMDEPTTGLD 801
I L+ P +I +DEPT+ LD
Sbjct: 436 AIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 25/168 (14%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVR 703
+++ ++ T+ G L+G SG GKTT+L ++AG +T G I ++G +
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDG-----QDITH 80
Query: 704 VSGYCEQTDIHS--------PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD 755
V E +++ PH+T+ E++ F LR+ ++ V L+ ++L+
Sbjct: 81 VPA--ENRHVNTVFQSYALFPHMTVFENVAFG--LRMQKTPAAEITPR-VMEALRMVQLE 135
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
+ LS Q++R+ I +V P ++ +DE + LD +
Sbjct: 136 EFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 38/184 (20%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNGYP- 695
L D+T ++ +TAL+G SG GK+TLL D++ G + +G +I NG
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITG----DILYNGENI 75
Query: 696 ------------KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKAD 743
KI F R + + + +I E++ + R+ + N KT
Sbjct: 76 MDSGADVVALRRKIGMVFQRPNPFPK---------SIYENVAYGP--RIHGEKNKKTLDT 124
Query: 744 CVNHVLKTIEL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA 802
V LK L D +K+ L LS Q++RL I L NP +I MDEP + LD
Sbjct: 125 IVEKSLKGAALWDEVKDRLH--DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP 182
Query: 803 RAAA 806
A A
Sbjct: 183 IATA 186
|
Length = 253 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 29/172 (16%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPKIQE 699
Q+L+D++ + G + AL+G SG+GKTTLL ++AG +TSG F G + +
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--- 72
Query: 700 TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQ--------INSKTKADCVNHVLKT 751
R G+ Q H+T+ +++ F L + P+ I +K V +L+
Sbjct: 73 --DRKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAK-----VTQLLEM 123
Query: 752 IELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
++L + + P + LS Q++R+ + L P I+ +DEP LDA+
Sbjct: 124 VQLAHLADRY---P--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 17/233 (7%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETF 701
LL ++ T G +T L+G +G+GK+TLL +L GR +GEI ++ P + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 702 VRVSGYCEQTDIHSPHITIEE--SLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
R Y Q + +T+ E ++ W + + + V + I L G+K
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADRE----KVEEAISLVGLKP 139
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA-DT 818
+ V LS +R+R I + + + + +DEPT+ LD V+ V ++ +
Sbjct: 140 LAHRL--VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER 197
Query: 819 GRTIVCTIHQPSIDIFESF-DELILLKTGGRIIYSGPLGNHSSRVIEYFEGIP 870
G T++ +H I++ + D L+ L+ G I P +E GIP
Sbjct: 198 GLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIYGIP 248
|
Length = 265 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 17/177 (9%)
Query: 653 LRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTD 712
+ G + G +GAGKTTLL VLAG G+I+++G + R Y
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLP 91
Query: 713 IHSPHITIEESLFFSAWL--RLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770
++ E+L F L R A Q+ L + L G +++L V L
Sbjct: 92 GLKADLSTLENLHFLCGLHGRRAKQMPG--------SALAIVGLAGYEDTL-----VRQL 138
Query: 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIH 827
S Q+KRL + ++ + +DEP LD +V R + G + T H
Sbjct: 139 SAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 47/210 (22%), Positives = 80/210 (38%), Gaps = 48/210 (22%)
Query: 25 GEVSYNGYKLEE---FVPQKLSAYVSQYDLHIP-EMTVRETLDFSTYCQGVGSRADILLE 80
G+V+ +G FV +K+ V + + +T RE L + L
Sbjct: 57 GKVTIDGVDTVRDPSFVRRKIG--VLFGERGLYARLTARENLKY------FAR----LNG 104
Query: 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGIS 140
LS +E +ARI K L L D VG S
Sbjct: 105 LSRKEIKARI------AELSKR------------------LQLLEYLDRRVG-----EFS 135
Query: 141 GGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQP 200
G K+++ R ++ P + +D+ T+GLDI T + ++ L + A I S
Sbjct: 136 TGMKQKVAIARALVHDP-SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS--HI 192
Query: 201 SPETFHLFDDIILMAEGKILYHGPRESVLE 230
E L D +I++ +G+++ G E++
Sbjct: 193 MQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-06
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 33/219 (15%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGC--FKG-EIKVNGYPKIQET 700
L + PG + AL+G +GAGK+T++ VL G + +G + G E+ NG QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 701 FVRVSGYCEQTDIHS-----PHITIEESLFF-----SAWLRLAPQINSKTKADCVNHVLK 750
+ + IH P +TI E++F + + R I+ K + +L
Sbjct: 80 GIGI--------IHQELNLIPQLTIAENIFLGREFVNRFGR----IDWKKMYAEADKLLA 127
Query: 751 TIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
+ L + LVG LS +++ + I L +I MDEPT L + R
Sbjct: 128 RLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182
Query: 811 AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849
++ + GR IV H+ +IFE D++ + + G I
Sbjct: 183 VIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFI 220
|
Length = 501 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-06
Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 34/193 (17%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAGRKTS--GCFKGE------IKVNGYPKIQETFVR 703
T RPG + ++G +G GK+T L +LAG G ++ IK ++Q F +
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155
Query: 704 VSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLV 762
+ Y + H P ++ L P++ V +LK ++ G + +V
Sbjct: 156 L--YEGELRAVHKPQ-----------YVDLIPKVVKGK----VGELLKKVDERGKFDEVV 198
Query: 763 GIPG--------VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 814
G VS LS + +R+ I L+ + + F DEP++ LD R R ++
Sbjct: 199 ERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 815 VADTGRTIVCTIH 827
+A+ G+ ++ H
Sbjct: 259 LAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 28/222 (12%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFK---GEIKVNGYPKIQ 698
+ L +V+ + G A++G +G+GK+T+ +L +G K GEIK++G +
Sbjct: 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKIL-----TGLLKPQSGEIKIDGITISK 75
Query: 699 ETFVRVS---GYCEQT-DIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL 754
E + G Q D T+E+ + F + ++ K D ++ + K +
Sbjct: 76 ENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKV-- 130
Query: 755 DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 814
G+++ L P LS Q++R+ I L NP II DE T+ LD + + + + +
Sbjct: 131 -GMEDYLDKEP--QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVD 187
Query: 815 VADTG-RTIVCTIHQPSIDIFESF--DELILLKTGGRIIYSG 853
+ T +T++ H D+ E+ D++I+ G++I G
Sbjct: 188 LRKTRKKTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-06
Identities = 58/223 (26%), Positives = 96/223 (43%), Gaps = 37/223 (16%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTS-GCFKGEIKVNGYPKI 697
L+ ++ T+ G A++G SGAGK+T+L DV +G T G ++
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT------- 331
Query: 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
Q++ R G Q + LF A+ V + ++
Sbjct: 332 QQSLRRAIGIVPQ----------DTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDF 381
Query: 758 KESL-------VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
+SL VG G+ LS +++R+ I ++ NP I+ +DE T+ LD +
Sbjct: 382 IQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA 440
Query: 811 AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
A++ V+ GRT + H+ S I DE+I+L GRI+ G
Sbjct: 441 ALREVSA-GRTTLVIAHRLSTII--DADEIIVLDN-GRIVERG 479
|
Length = 497 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-06
Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 36/224 (16%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGY-------PK 696
++D + + G + +MG+SG+GK+TL+ +L T G EI V+G +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG----EILVDGKDIAKLSAAE 99
Query: 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
++E + Q+ PH T+ E++ F ++ P+ + +A L+ + L+G
Sbjct: 100 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERAL---EALELVGLEG 156
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD----ARAAAIVMRAV 812
+ LS ++R+ + L +P I+ MDE + LD ++
Sbjct: 157 YADKYPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQ 211
Query: 813 KNVADTGRTIVCTIHQPSIDIFESF---DELILLKTGGRIIYSG 853
+ +TIV H D+ E+ D + ++K G I+ G
Sbjct: 212 AKL---KKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 31/196 (15%), Positives = 72/196 (36%), Gaps = 3/196 (1%)
Query: 960 PSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPY 1019
+ + IL I LFGL G+ + + L + I + +
Sbjct: 49 SALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFS 108
Query: 1020 AASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYK--I 1077
+A R + + SP++ F + +PYL++ + + ++ + + +
Sbjct: 109 SALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSL 168
Query: 1078 FWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLF-AGFVIPQPQIPKWW 1136
+ +++ LGLLL + + ++ F +G P +P W
Sbjct: 169 LLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWL 228
Query: 1137 IWLYYLSPTSWTLEGL 1152
+ Y++P ++ ++ L
Sbjct: 229 QGISYINPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 36/202 (17%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPKI 697
K ++++DV+ + G + L+G +GAGKTT ++ G R SG E + P
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDE-DITKLP-- 72
Query: 698 QETFVRVS---GYCEQTDIHSPHI----TIEESLFFSAWLRLAPQINSKTKA-----DCV 745
R GY Q I T+E+++ +I K + +
Sbjct: 73 --MHKRARLGIGYLPQ----EASIFRKLTVEDNI------MAVLEIREKDLKKAERKEEL 120
Query: 746 NHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAA 805
+ +L+ + +++S S LS +R+R+ I L ANP I +DEP G+D A
Sbjct: 121 DALLEEFHITHLRDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAV 175
Query: 806 AIVMRAVKNVADTGRTIVCTIH 827
+ R +K++ D G ++ T H
Sbjct: 176 IDIQRIIKHLKDRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 16/194 (8%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVL---AGRKTSGCFKGEIKVNGY---- 694
K + L+ V+ P +TAL+G SG+GK+TLL + G I NG+
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76
Query: 695 PKIQETFVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKAD-CVNHVLKTI 752
P+ +R G Q P ++I E++ + LRL I K D V LK
Sbjct: 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLK-GIKDKQVLDEAVEKSLKGA 132
Query: 753 EL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
+ D +K+ L GLS Q++R+ I L +P II +DEPT+ LD +A +
Sbjct: 133 SIWDEVKDRLHD--SALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET 190
Query: 812 VKNVADTGRTIVCT 825
+ + D ++ T
Sbjct: 191 LLGLKDDYTMLLVT 204
|
Length = 252 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 118 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQ 177
L+ +GL AD G+ +S GQ+RRL R + P K + +D+ GL+ + +
Sbjct: 134 LEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQP-KLLLLDEPAAGLNPEETEE 187
Query: 178 IVTCLQHLAHITDATILI-----SLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
+ ++ L TIL+ L+ L D I+++ G+++ G E V
Sbjct: 188 LAELIRELRDRGGVTILLIEHDMKLV------MGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 19/191 (9%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQET 700
H LL ++ L G L L G +GAGKTTLL ++AG KGEI ++
Sbjct: 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDL 69
Query: 701 FVRVSGYC---EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
C ++ I +P++T+ E+ + I+ A + + + L+ +
Sbjct: 70 CTYQKQLCFVGHRSGI-NPYLTLRENCLYD--------IHFSPGAVGITELCRLFSLEHL 120
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817
+ G+ LS+ Q++++ + ++ + +DEP LD + ++ ++
Sbjct: 121 IDYPCGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA 175
Query: 818 TGRTIVCTIHQ 828
G ++ T HQ
Sbjct: 176 KGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 658 LTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS-GYCE 709
+TA++G SG GKTTLL D + G + G + + P++ T R G
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVF 90
Query: 710 QTDIHSPHITIEESLFFSAWLRLAPQINSKTKAD-CVNHVLKTIEL-DGIKESLVGIPGV 767
Q P ++I +++ F R+ + SK K D V LK L D +K L PG
Sbjct: 91 QKPTPFP-MSIYDNVAFG--PRIH-GVKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGT 145
Query: 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIH 827
LS Q++RL I L P +I +DEPT+ LD A + + ++ +++ TIV H
Sbjct: 146 R-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN-YTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 15/194 (7%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP--------K 696
+L D+T + + +MG SG+GK+TLL VL + + +IKV+G +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL--NRLIEIYDSKIKVDGKVLYFGKDIFQ 82
Query: 697 IQETFVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD 755
I +R G Q PH++I +++ + L+ + V L+ + L
Sbjct: 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLW 140
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
+ P S LS Q++RLTI L P ++ MDEPT+ +D + + + + +
Sbjct: 141 KEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL 199
Query: 816 ADTGRTIVCTIHQP 829
+ IV H P
Sbjct: 200 KNE-IAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 30/190 (15%)
Query: 626 IDTPLEMRRRECGLAH-KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGC 684
++ +R + L + K + +++T + G TA++G +G GK+TLL L+ T
Sbjct: 2 TESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA- 60
Query: 685 FKGEIKVNGYPKIQ----ETFVRVSGYCEQTDIHSPHITIEESL---------FFSAWLR 731
G + ++G IQ + R G Q IT++E + F+ W
Sbjct: 61 -HGHVWLDG-EHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRW-- 116
Query: 732 LAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSII 791
K + V ++ GI + V LS QR+R I + L +I+
Sbjct: 117 ------RKEDEEAVTKAMQAT---GITH--LADQSVDTLSGGQRQRAWIAMVLAQETAIM 165
Query: 792 FMDEPTTGLD 801
+DEPTT LD
Sbjct: 166 LLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 27/160 (16%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETF 701
++L DV+ L+PG + L+G +GAGK+TL+ V+ G G K K
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK----------- 66
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
+R+ GY Q ++ L + +LRL P K D + LK ++ L
Sbjct: 67 LRI-GYVPQ----KLYLDTTLPLTVNRFLRLRPGTK---KED-ILPALKRVQ----AGHL 113
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
+ P + LS + +R+ + L+ P ++ +DEPT G+D
Sbjct: 114 IDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 56/205 (27%)
Query: 656 GVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHS 715
VL + GVSG+GK+TL V G SG F S
Sbjct: 21 NVLVVVTGVSGSGKSTL--VNEGLYASGK-------ARLISFLPKF-------------S 58
Query: 716 PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775
+ I F L+ + L + L +L S +
Sbjct: 59 RNKLI-----FIDQLQFLIDVG-----------LGYLTLGQKLSTL---------SGGEL 93
Query: 776 KRLTIGVELVANP--SIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDI 833
+R+ + EL + P ++ +DEP+TGL + ++ +K + D G T++ H D+
Sbjct: 94 QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL--DV 151
Query: 834 FESFDELILL-----KTGGRIIYSG 853
S D +I K+GG++++SG
Sbjct: 152 LSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 49/192 (25%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNGYPK 696
Q L DV + +TA +G SG GK+T L D + G + +G +I ++G
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTG----KITLDG--- 85
Query: 697 IQETFVRVSGYCEQTDIHSPHITIEE-----SLFF--------SAWLRLA--PQIN--SK 739
DI+ P + + E + F S + +A P+I+ ++
Sbjct: 86 --------------EDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLAR 131
Query: 740 TKADCVNHVLKTIELDGIKESL---VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEP 796
+KA+ V ++ G+ E + + PG +GLS Q++RL I + +P +I MDEP
Sbjct: 132 SKAELDEIVETSLRKAGLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEP 190
Query: 797 TTGLDARAAAIV 808
+ LD A A V
Sbjct: 191 CSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 198
+SGG+K+R+ GR +L P + + MD+ LD+ +I+ L+ L + IL +
Sbjct: 129 LSGGEKQRVAIGRALLTAP-ELLLMDEPLASLDLPRKREILPYLERLRDEINIPIL--YV 185
Query: 199 QPSP-ETFHLFDDIILMAEGKILYHGPRESVLE 230
S E L D ++++ GK+ GP E V
Sbjct: 186 SHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 19/101 (18%)
Query: 137 RGISGGQKRRLTTGREMLVG--PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL 194
R +SGGQ++ + R L+ PI + +D+ T+ +D + + L+ T++
Sbjct: 600 RSLSGGQRQAVALAR-ALLRDPPI--LLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLV 654
Query: 195 I-----SLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
+ SLL L D II+M G+I+ GP++ VLE
Sbjct: 655 LVTHRTSLLD-------LVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 140 SGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL----- 194
SGGQ++R+ R ++ P K + +D+ T+ LD+S QI+ L L T L
Sbjct: 143 SGGQRQRIAIARALIPEP-KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201
Query: 195 ISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFF 232
++L++ H+ D I +M G+I+ GP E +L
Sbjct: 202 LALVE------HMCDRIAVMDNGQIVEIGPTEELLSHP 233
|
Length = 252 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 48/184 (26%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNGYPK 696
Q L + + +TAL+G SG GK+T L D++ K G E+ ++G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEG----EVLLDG--- 69
Query: 697 IQETFVRVSGYCEQTDI-----------HSPH---ITIEESLFFSAWLRLAPQ---INSK 739
Y D+ P+ ++I +++ + P+ I K
Sbjct: 70 -------QDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAY------GPRTHGIKDK 116
Query: 740 TKAD-CVNHVLKTIEL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPT 797
K D V LK L D +K+ L GLS Q++RL I L P ++ MDEPT
Sbjct: 117 KKLDEIVEKSLKGAALWDEVKDRLK--KSALGLSGGQQQRLCIARALAVEPEVLLMDEPT 174
Query: 798 TGLD 801
+ LD
Sbjct: 175 SALD 178
|
Length = 250 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCF----KGEIKVNGYPKIQETF 701
LD ++ + PG AL+G SG+GK+TL++++ F G+I ++G+ + +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPR------FYEPDSGQILLDGHD-LADYT 400
Query: 702 VR--------VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE 753
+ VS D+ + TI ++ + A + + +
Sbjct: 401 LASLRRQVALVS-----QDVVLFNDTIANNIAYGR-TEQADRAEIERALAAAY--AQDF- 451
Query: 754 LDGIKESLVGIPGVSG--LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
+D + L G +G LS QR+RL I L+ + I+ +DE T+ LD + +V A
Sbjct: 452 VDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAA 511
Query: 812 VKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
++ + GRT + H+ S E D ++++ GRI+ G
Sbjct: 512 LERLMQ-GRTTLVIAHRLS--TIEKADRIVVMDD-GRIVERGT 550
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 28/210 (13%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGC--FKG-EIKVNGYPKIQET 700
L V T++ G +L+G SG GK+TLL++++G + TSG +G +I G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
F S P +T+ E++ A R+ P ++ + V I L G+ E+
Sbjct: 60 FQNYSLL--------PWLTVRENIAL-AVDRVLPDLSKSERRAIVEE---HIALVGLTEA 107
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA-DTG 819
PG LS ++R+ I L P ++ +DEP LDA + + + +
Sbjct: 108 ADKRPG--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 820 RTIVCTIHQPSIDIFESF---DELILLKTG 846
T++ H D+ E+ D +++L G
Sbjct: 166 VTVLMVTH----DVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
G LS QR+RL I LV P I+ DE T+ LD R AIV
Sbjct: 585 GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 54/192 (28%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNGYPK 696
Q L D++ +TAL+G SG GK+T L D++ G + GEI ++G
Sbjct: 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVE----GEILLDG--- 72
Query: 697 IQETFVRVSGYCEQTDIHSPHI---------------------TIEESLFFSAWLRLAPQ 735
+I+ PH+ +I E++ + LR+
Sbjct: 73 --------------ENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYG--LRVNGV 116
Query: 736 INSKTKADCVNHVLKTIEL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMD 794
+ A+ V L+ L D +K+ L GLS Q++RL I L P ++ MD
Sbjct: 117 KDKAYLAERVERSLRHAALWDEVKDRLH--ESALGLSGGQQQRLCIARALAVEPEVLLMD 174
Query: 795 EPTTGLDARAAA 806
EP + LD A
Sbjct: 175 EPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 36/216 (16%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L ++ ++PG + A++G SGAGKTTLL ++ G K G K + +V
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG---------AQKGRGEEKYRPDSGKV 448
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
P P+ T + H+ ++
Sbjct: 449 EVPKNTVSALIPGE-------------YEPEFGEVTILE---HLRSKTGDLNAAVEILNR 492
Query: 765 PGVSG----------LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 814
G+S LST Q++R + L P+++ +DE LD A V R +
Sbjct: 493 AGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISE 552
Query: 815 VA-DTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849
+A + G T++ H+P + D LIL+ G
Sbjct: 553 LAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588
|
Length = 593 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 36/230 (15%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQET--- 700
++L + ++ G + A+MG +G+GK+TL V+AG +G+I G +
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 701 ------FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHV--LKTI 752
F+ Q I P ++ + +LRLA NSK K + + L+ +
Sbjct: 81 RAHLGIFLAF-----QYPIEIPGVSNAD------FLRLA--YNSKRKFQGLPELDPLEFL 127
Query: 753 ELDGIKESLVGIPGV-------SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAA 805
E+ K LVG+ G S ++KR I + + + +DE +GLD A
Sbjct: 128 EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDAL 187
Query: 806 AIVMRAVKNVADTGRTIVCTIH-QPSID-IFESFDELILLKTGGRIIYSG 853
I+ + + + +I+ H Q +D I + + + G+II +G
Sbjct: 188 KIIAEGINKLMTSENSIILITHYQRLLDYIKPDY---VHVMQNGKIIKTG 234
|
Length = 252 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVL-------AGRKTSG--CFKGEIKVNGY 694
L ++ ++ +TA++G SG GK+T + L K +G + G + G
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL 754
+ E + G Q P +I +++ + R+ N K + V LK + L
Sbjct: 86 VDLVELRKNI-GMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVAL 141
Query: 755 -DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
D +K+ L LS Q++RL I L NP ++ MDEPT+ LD
Sbjct: 142 WDEVKDRLHT--QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 44/178 (24%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTT----LLDVLAGRKTSGCFKGEIKVNGYP------ 695
+ +++ TLRPG L+G SG+GK+T LL ++ + GEI +G P
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 696 --------KIQETFVRVSGYCEQTDIHS---PHITIEESLFFSAWLRL-APQINSKTKAD 743
+IQ F D +S P + + + LR+ P +++ +
Sbjct: 355 RQLLPVRHRIQVVF---------QDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQ 403
Query: 744 CVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
V V++ + LD E+ P + S QR+R+ I L+ PS+I +DEPT+ LD
Sbjct: 404 QVIAVMEEVGLD--PETRHRYP--AEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFK--GEIKVNGYPKIQE 699
K Q L D+ + +TAL+G SG GK+T L R K G +++ G +
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCF-NRMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 700 TFV----RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADC-VNHVLKTIEL 754
V V +Q ++ +I E++ ++ +L I +K + + V L+ + L
Sbjct: 73 DVVALRKNVGMVFQQPNVFVK--SIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGL 128
Query: 755 -DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
+ +K+ L LS Q++RL I L P ++ +DEPT+ LD ++ ++ +K
Sbjct: 129 FEEVKDKLK--QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
Query: 814 NVADTGRTIVCT 825
++ I+ T
Sbjct: 187 ELSHNLSMIMVT 198
|
Length = 246 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 12/188 (6%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG-CFKGEIKVNGYPKIQET 700
Q L VT +RPG + L G SGAGK+TLL ++ G R ++G + + +
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 701 FVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
F+R G Q H+ ++ +++ + + L I + D V ++ G+ +
Sbjct: 76 FLRRQIGMIFQDH----HLLMDRTVYDNVAIPLI--IAGASGDDIRRRVSAALDKVGLLD 129
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG 819
P LS +++R+ I +V P+++ DEPT LD + ++R + G
Sbjct: 130 KAKNFP--IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 820 RTIVCTIH 827
T++ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 40/208 (19%)
Query: 25 GEVSYNGYKLEEFVPQKLS---AYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLEL 81
GEV +G + P++L+ AYV Q +TV E +LL
Sbjct: 57 GEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE---------------LVLL-- 99
Query: 82 SGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISG 141
GR P ++ + + L++LGL+ AD V + +SG
Sbjct: 100 -GR------YP------HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSG 141
Query: 142 GQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPS 201
G+++R+ R L + +D+ T+ LDI+ +++ L+ L T+++ L +
Sbjct: 142 GERQRVLIAR-ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN 200
Query: 202 PETFHLFDDIILMAEGKILYHGPRESVL 229
D +IL+ +GKI+ G E VL
Sbjct: 201 -LAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 118 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQ 177
L +GL AD LV + SGG +RRL R ++ P + +F+D+ T GLD T
Sbjct: 116 LDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRP-EVLFLDEPTIGLDPQTRAH 169
Query: 178 IVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223
+ ++ L TIL++ E L D + ++ G+I+ G
Sbjct: 170 VWEYIEKLKEEFGMTILLT-THYMEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 18/109 (16%)
Query: 128 DTLVGDAIRRGISGGQKRRLTTGREMLV-GPIKAMFMDKITNGLDISTSFQIVTCLQHLA 186
+T +G+ RR +SGG++RRL R +L P+ +D+ T GLD T Q++ L
Sbjct: 465 NTWLGEGGRR-LSGGERRRLALARALLHDAPL--WLLDEPTEGLDPITERQVLALL--FE 519
Query: 187 HITDATILISLLQPSPETFHL-----FDDIILMAEGKILYHGPRESVLE 230
H T+L+ T L D II++ GKI+ G +L
Sbjct: 520 HAEGKTLLMV-------THRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 118 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQ 177
+++LG+ L G +SGG+K+R+ GR +L P + + MD+ LD ++
Sbjct: 116 IELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSP-RLLLMDEPLAALDDPRKYE 169
Query: 178 IVTCLQHL-AHITDATILIS-LLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229
I+ L+ L A + +S LQ E L D ++++ +G++ GP V
Sbjct: 170 ILPYLERLHAEFGIPILYVSHSLQ---EVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 33/203 (16%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVR 703
++L+ V+ + +TA++G SG GK+T L L R + E++V G +++ F
Sbjct: 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL-NRMNE--LESEVRVEG--RVE--FFN 73
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI------ELDGI 757
+ Y + +++ + + S+ P + + D V + +K + E+D I
Sbjct: 74 QNIYERRVNLN--RLRRQVSMVHP-----KPNLFPMSVYDNVAYGVKIVGWRPKLEIDDI 126
Query: 758 KESLVGIP------------GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAA 805
ES + LS Q++RL I L P ++ MDEP GLD A+
Sbjct: 127 VESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186
Query: 806 AIVMRAVKNVA-DTGRTIVCTIH 827
V ++++ + T+V H
Sbjct: 187 MKVESLIQSLRLRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 32/176 (18%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNG--- 693
Q L+D+ + +TAL+G SG GK+T L D+++ K +GE+ ++G
Sbjct: 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK----IEGEVLLDGKNI 73
Query: 694 YPK---IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQI----NSKTKADCVN 746
Y K + E RV G Q P ++I +++ + P+I + K V
Sbjct: 74 YDKDVDVVELRKRV-GMVFQKPNPFP-MSIYDNVAY------GPRIHGIKDKKELDKIVE 125
Query: 747 HVLKTIEL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
LK L D +K+ L LS Q++RL I + P +I MDEPT+ LD
Sbjct: 126 WALKKAALWDEVKDDLK--KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 5e-05
Identities = 45/226 (19%), Positives = 87/226 (38%), Gaps = 24/226 (10%)
Query: 617 MVFQDLQYSIDTP--------LEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAG 668
MV +++ + P LE+ + + DV+ +R G + + GV+G G
Sbjct: 237 MVGREVVLRVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNG 296
Query: 669 KTTLLDVLAG-RKTSGCFKGEIKVNGYPKIQETFV---RVSGY-CEQTDIH----SPHIT 719
++ L++ ++G RK + G I +NG + R G D H ++
Sbjct: 297 QSELVEAISGLRKPA---SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLS 353
Query: 720 IEESLFFSAWLRLAPQINSK-TKADCVN-HVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777
+ E+L P + + IE ++ P LS +++
Sbjct: 354 LAENLVLG-RHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGNQQK 411
Query: 778 LTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIV 823
L + EL P ++ +PT GLD A + + + D G+ ++
Sbjct: 412 LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 26/180 (14%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGC-FKGEIKVNG-- 693
Q L D++ + +TA +G SG GK+TLL D++ C +GEI+++G
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLV-----DNCRIEGEIRLDGQN 93
Query: 694 -YPK---IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
Y K + E RV G Q P +I E++ + LRL N + + V L
Sbjct: 94 IYDKKVDVAELRRRV-GMVFQRPNPFPK-SIYENVVYG--LRLQGINNRRVLDEAVERSL 149
Query: 750 KTIEL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIV 808
+ L D +K+ L GLS Q++RL I + P ++ +DEPT+ LD + +
Sbjct: 150 RGAALWDEVKDRLH--ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 648 DVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCF---KGEIKVNGYPKI 697
DV+ +TA++G SG GK+T+L D++ + +G +I G +
Sbjct: 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81
Query: 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-DG 756
+ R G Q P ++I +++ A +L ++N + V LK + L D
Sbjct: 82 --SIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
+K+ L LS Q++RL I + P +I MDEP + LD
Sbjct: 138 VKDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 64/240 (26%), Positives = 99/240 (41%), Gaps = 28/240 (11%)
Query: 617 MVFQDLQ--YSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLD 674
+ FQ ++ Y TP E R L DV ++ G A++G +G+GK+TLL
Sbjct: 3 ITFQKVEHRYQYKTPFERRA-----------LYDVNVSIPSGSYVAIIGHTGSGKSTLLQ 51
Query: 675 VLAG--RKTSGCFK-GE--IKVNGYPKIQETFVRVSGYCEQTDIHSP-HITIEESLFFSA 728
L G + TSG GE I K + + G Q H T+E+ + F
Sbjct: 52 HLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICF-- 109
Query: 729 WLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANP 788
P ++ D + IEL G+ E L+ LS Q +R+ I L P
Sbjct: 110 ----GPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFE-LSGGQMRRVAIAGVLAMEP 164
Query: 789 SIIFMDEPTTGLDARAAAIVMRAVKNV-ADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847
++ +DEPT GLD + +M + + G T V H D D+++++ G
Sbjct: 165 EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 129 TLVG-----DAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQ 183
VG D +SGGQK+R+ R LV K + D+ T LD + +V +Q
Sbjct: 127 EAVGLGDHLDYYPHNLSGGQKQRVAIARA-LVHRPKLVLADEPTAALDSKSGRDVVELMQ 185
Query: 184 HLAHITDATILISLLQPSPETFHLFDDIILMAEGKIL 220
LA TILI + + D I+ M +GK+L
Sbjct: 186 KLAREQGCTILI--VTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 32/201 (15%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVL-------------AGRKTSGCFKGEIK 690
Q L D+T G L+G SGAGK++LL VL AG F
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFD--FSKTPS 73
Query: 691 VNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLR---LAPQINSKTKADCVNH 747
I+E V +Q ++ PH+T++++L A R L+ + +A+
Sbjct: 74 DK---AIRELRRNVGMVFQQYNLW-PHLTVQQNLI-EAPCRVLGLSKDQ-ALARAE---K 124
Query: 748 VLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807
+L+ + L + P LS Q++R+ I L+ P ++ DEPT LD A
Sbjct: 125 LLERLRLKPYADRF---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 808 VMRAVKNVADTGRTIVCTIHQ 828
++ ++ +A+TG T V H+
Sbjct: 180 IVSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGY 694
Q L DV + G + A++G SGAGK+TLL L G TS GEI NG
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS----GEILFNGV 66
|
Length = 258 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN-VADTGRTIVCTIHQPSIDI 833
++RL I LV P ++FMDEPT GLD A ++ ++ V + G +V H ++
Sbjct: 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216
Query: 834 FESFDELILLKTGGRIIYSG 853
+ D L+++K G+++ SG
Sbjct: 217 LLA-DRLMVMK-QGQVVESG 234
|
Length = 258 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 8e-05
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 23/210 (10%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+L V ++PG + G +G+GK++L LA + F G+I ++G + +
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSL--SLAFFRMVDIFDGKIVIDG--------IDI 85
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
S T I +++ + FS +R K D + L+ +L + +SL G
Sbjct: 86 SKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPG- 144
Query: 765 PGVSGLSTE--------QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
G+ + TE QR+ + V SI+ MDE T +D I+ + V A
Sbjct: 145 -GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMT-A 202
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTG 846
RT+V H+ S I ++ D +++L G
Sbjct: 203 FADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 19/223 (8%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGE--IKVNGYPK 696
+L++V+ +L+ G AL+G SG GK+TL +L G + G ++GE K+N
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR--A 82
Query: 697 IQETFVRVSGYCEQTDIHS--PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL 754
++ F R Q I + P T+ E + LR ++ + + +L+ ++L
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDL 140
Query: 755 DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 814
D L P LS Q +R+ + L P ++ +DE + LD A V+R +K
Sbjct: 141 D--DSVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK 196
Query: 815 V-ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856
+ G + H + + E F + +++ G+I+ + P+G
Sbjct: 197 LQQQFGTACLFITH--DLRLVERFCQRVMVMDNGQIVETQPVG 237
|
Length = 268 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 8e-05
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 18/213 (8%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG-----YPKIQET 700
L+++ ++ G ++G +G+GK+TL L G KG++ V+G + K+Q
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ--KGKVLVSGIDTGDFSKLQGI 75
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
V + + T+EE L F P I + + D L I L+ +
Sbjct: 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVD---RALAEIGLEKYRHR 132
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820
LS Q + + + L P + DE T+ LD + V+ +K + + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 821 TIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
TIV H +++ D +I++ G+I+ G
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDR-GKIVLEG 217
|
Length = 274 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 8e-05
Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 29/167 (17%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
+D++ T++ G + L+G SG GKTT+L ++AG + T G+I ++G E
Sbjct: 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE----GQIFIDG-----EDVTH 72
Query: 704 VSGYCEQTDI----HS----PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD 755
S +Q DI S PH+++ E++ + L++ + + + V L+ ++L
Sbjct: 73 RS--IQQRDICMVFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLA 127
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA 802
G ++ V +S Q++R+ + L+ P ++ DEP + LDA
Sbjct: 128 GFEDRY-----VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 9e-05
Identities = 50/213 (23%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L DV+ + G L+G +GAGK+TLL +LAG S G + V G R
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS----GTVTVRG---------R 84
Query: 704 VSGYCE-QTDIHSPHITIEESLFFSA-WLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
VS + P +T E+++ + L L ++ + + + IE + + +
Sbjct: 85 VSSLLGLGGGFN-PELTGRENIYLNGRLLGL-------SRKEIDEKIDEIIEFSELGDFI 136
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821
+P V S+ + RL + P I+ +DE DA R ++ + G+T
Sbjct: 137 D-LP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKT 194
Query: 822 IVCTIHQPSIDIFESF-DELILLKTGGRIIYSG 853
++ H + D ++L+ G+I + G
Sbjct: 195 VILVSH--DPSSIKRLCDRALVLE-KGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 52/213 (24%), Positives = 79/213 (37%), Gaps = 49/213 (23%)
Query: 24 TGEVSYNGYKLEEFVPQKLS---AYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLE 80
G + +G L + L YV Q D + ++RE +
Sbjct: 527 QGRILLDGVDLNDIDLASLRRQVGYVLQ-DPFLFSGSIRENIALG--------------- 570
Query: 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRG-- 138
D +I + H +NL Y DT VG+ G
Sbjct: 571 -------NPEATDEEIIEAAQLAGAHEFIENLPMGY-----------DTPVGE---GGAN 609
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCL-QHLAHITDATILISL 197
+SGGQ++RL R L+ K + +D+ T+ LD T I+ L Q L T I+I+
Sbjct: 610 LSGGQRQRLALAR-ALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRT--VIIIA- 665
Query: 198 LQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
T D II++ +GKI+ G E +L
Sbjct: 666 --HRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 29/194 (14%)
Query: 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAG---RKTSGCFKGEIKVNG---YPK----- 696
D++ ++ G + G+ G+G+T L++ L G R GEI++NG P+
Sbjct: 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG-----GEIRLNGKDISPRSPLDA 335
Query: 697 -------IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
I E+ R +G+ I + ++ I SL + + +
Sbjct: 336 VKKGMAYITES-RRDNGFFPNFSI-AQNMAISRSLKDGGYKGAMGLFHEVDEQRTAE--- 390
Query: 750 KTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
EL +K V ++ LS ++++ I L P +I DEPT G+D A A +
Sbjct: 391 NQRELLALKCHSVN-QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIY 449
Query: 810 RAVKNVADTGRTIV 823
+ ++ +AD G+ I+
Sbjct: 450 KVMRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIH- 827
GLS Q++RL I L +P +I MDEP + LD A + + ++ +A+ T+V H
Sbjct: 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHN 258
Query: 828 -QPSIDIFESFDELILLKTGGRI--------IYSGPLGNHSSRVIEYFEG 868
Q + I D+ + TGG + I+ P S RV +Y G
Sbjct: 259 MQQAARI---SDQTAVFLTGGELVEYDDTDKIFENP---ESQRVEDYITG 302
|
Length = 305 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 26/218 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETF-- 701
L DV+ ++ G A++G +G+GK+TL +L G +G I V G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG----TITVGGMVLSEETVWD 78
Query: 702 VR--VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
VR V + D T+++ + F P + + V V + + G+++
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP------REEMVERVDQALRQVGMED 132
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG 819
L P LS Q++R+ I L P II +DE T+ LD R V+ V+ + +
Sbjct: 133 FLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 820 RTIVCTI-HQPSIDIFE--SFDELILLKTGGRIIYSGP 854
V +I H D+ E D +I++ G I+ G
Sbjct: 191 GITVLSITH----DLDEAAQADRVIVMN-KGEILEEGT 223
|
Length = 279 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 38/223 (17%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG------------------ 693
+RPG + A+MG +G+GK+TL LAGR+ G ++ G
Sbjct: 23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFM 82
Query: 694 ---YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLK 750
YP V + G S ++ +L R ++ + D + + +
Sbjct: 83 AFQYP------VEIPGV-------SNQFFLQTALNAVRSYRGQEPLD---RFDFQDLMEE 126
Query: 751 TIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
I L + E L+ G S ++KR I V P + +DE +GLD A IV
Sbjct: 127 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVAD 186
Query: 811 AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
V ++ D R+ + H I + D + +L GRI+ SG
Sbjct: 187 GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQ-GRIVKSG 228
|
Length = 248 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 56/232 (24%)
Query: 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP--KIQETFVR 703
DV+ +R G + +MG+SG+GK+TLL + TSG ++ ++G + +R
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSG----KVLIDGQDIAAMSRKELR 97
Query: 704 VSGYCEQTDIHS-------------PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLK 750
++ PH T+ E++ F ++ P+ + +A L+
Sbjct: 98 --------ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAA---EALE 146
Query: 751 TIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
+ L+G + LS ++R+ + L +P I+ MDE + LD ++R
Sbjct: 147 LVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDP-----LIR 196
Query: 811 A------VKNVADTGRTIVCTIHQPSIDIFESF---DELILLKTGGRIIYSG 853
++ A+ +TIV H D+ E+ D + ++K GR++ G
Sbjct: 197 REMQDELLRLQAELQKTIVFITH----DLDEALRLGDRIAIMK-DGRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 36/217 (16%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR--KTSGCFKGEIKVNGYPK---IQE 699
LL DV+ ++ G LT ++G +G+GK+TLL L + + G E + P+ I
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMN 734
Query: 700 TFVRVSGYCEQTDIHSPHITIEESLFFSA--WLRLAPQIN-SKTKADCVNHVLKTIELDG 756
VR +I LFF RLA + S+ +AD +L G
Sbjct: 735 ATVR-------GNI----------LFFDEEDAARLADAVRVSQLEADLA-------QLGG 770
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
E+ +G GV+ LS Q+ R+++ + AN + +D+P + LDA V+ A
Sbjct: 771 GLETEIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA 829
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
G+T V HQ + + D ++ L GR+ +SG
Sbjct: 830 LAGKTRVLATHQ--VHVVPRADYVVALG-DGRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 37/229 (16%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L D++ + G ++G +GAGK+TLL ++AG + TS G++KV G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS----GKVKVTG---------K 89
Query: 704 VSGYCEQTDIHSPHITIEESLFFSA-WLRLAPQINSKTKADCVNHVLKTIELDGIKESLV 762
V+ E P +T E+++ L L + + K D + IE + +
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE-KVD------EIIEFAEL-GDFI 141
Query: 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK---NVADTG 819
P V S+ RL V P I+ +DE L AA + ++ + +
Sbjct: 142 DQP-VKTYSSGMYARLAFSVATHVEPDILLLDE---VLAVGDAAFQEKCLERLNELVEKN 197
Query: 820 RTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEG 868
+TIV H I + D I L+ G+I G VI +E
Sbjct: 198 KTIVLVSHDLGA-IKQYCDRAIWLE-HGQIRMEGSP----EEVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 31/221 (14%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP--KIQETFV 702
+L D++ T++ T ++G+SG+GK+TL +L G + GEI +NG+ I +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTL 546
Query: 703 RVS-GYCEQTDIHSPHI---TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-DGI 757
R Y Q P+I +I E+L A D + + E+ D I
Sbjct: 547 RQFINYLPQ----EPYIFSGSILENLLLGA--------KENVSQDEIWAACEIAEIKDDI 594
Query: 758 KESLVGI-----PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV 812
+ +G S +S Q++R+ + L+ + ++ +DE T+ LD ++ +
Sbjct: 595 ENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL 654
Query: 813 KNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
N+ D +TI+ H+ + + + D++I+L G II G
Sbjct: 655 LNLQD--KTIIFVAHR--LSVAKQSDKIIVLDHGK-IIEQG 690
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 36/196 (18%)
Query: 654 RPGVLTALMGVSGAGKTTLLDVLAGRKTS--GCFKGE------IKVNGYPKIQETFVRVS 705
R G + L+G +G GK+T L +LAG+ G F + ++Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 706 GYCEQTD-IHSPHITIEESLFFSAWLRLAPQ---------INSKTKADCVNHVLKTIELD 755
I P ++ L P+ + K + ++ ++ +EL
Sbjct: 84 E--GDVKVIVKPQ-----------YVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELR 130
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815
+ + + LS + +R+ I L + F DEP++ LD + R ++ +
Sbjct: 131 HVLDR-----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL 185
Query: 816 ADTGRTIVCTIHQPSI 831
A+ ++ H ++
Sbjct: 186 AEDDNYVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 18/162 (11%)
Query: 658 LTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY-----PKIQETFVRVSGYCEQTD 712
+TA++G SG GK+T + L R + +G +KV G I + + ++ Q
Sbjct: 35 VTAIIGPSGCGKSTFIKTL-NRISE--LEGPVKVEGVVDFFGQNIYDPRININRLRRQIG 91
Query: 713 I--HSPH---ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-DGIKESLVGIPG 766
+ P+ ++I E++ + +R++ ++ + V LK L +K+ L
Sbjct: 92 MVFQRPNPFPMSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVKDKLN--KS 147
Query: 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIV 808
GLS Q++RL I L P ++ MDEP + LD A V
Sbjct: 148 ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 54/207 (26%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
LL ++ +RPG + G SGAGKT+LL LAG G G I P
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRI---SMPADSALL--- 459
Query: 705 SGYCEQTDIHSPHI---TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
+ Q P++ T+ E+L + P + VL + L + E L
Sbjct: 460 --FLPQR----PYLPQGTLREALCY-------PNAAPDFSDAELVAVLHKVGLGDLAERL 506
Query: 762 VGI-PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820
LS +++RL L+ P +F+DE T+ LD + + +K
Sbjct: 507 DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE-ELPDA 565
Query: 821 TIVCTIHQPSIDIFESFDELILLKTGG 847
T++ H+P++ F S +L LL G
Sbjct: 566 TVISVGHRPTLWNFHS-RQLELLDDAG 591
|
Length = 604 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 28/192 (14%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG-----YPKIQE 699
+L D++ G + ++G SGAGK+TL+ ++ + +G I ++G I
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILIDGVDIKTIDVID- 74
Query: 700 TFVRVSGYCEQTDIHSPHI---TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
R G Q PH+ T+++++ P + + D V + L + L+
Sbjct: 75 -LRRKIGMVFQ----QPHLFEGTVKDNI------EYGPMLKGEKNVD-VEYYLSIVGLN- 121
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
KE V LS + +R++I L NP ++ +DEPT+ LD + I+ + +
Sbjct: 122 -KEYAT--RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLK 178
Query: 817 DT-GRTIVCTIH 827
+ T++ H
Sbjct: 179 NKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 25/193 (12%)
Query: 640 AH--KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNG 693
AH K+Q L +V+ + G + L+G +GAGKTTLL L G R TSG F G+ +
Sbjct: 13 AHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGK-DITD 71
Query: 694 YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE 753
+ + V+ E + S +T+EE+L + Q + K E
Sbjct: 72 WQTAKIMREAVAIVPEGRRVFS-RMTVEENLAMGGFFAERDQFQERIK--------WVYE 122
Query: 754 L-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR-- 810
L + E + G +S +++ L IG L++ P ++ +DEP+ GL A I+ +
Sbjct: 123 LFPRLHERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIF 177
Query: 811 -AVKNVADTGRTI 822
++ + + G TI
Sbjct: 178 DTIEQLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 30/229 (13%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG-----YPKI 697
L +LD + ++ G AL+G SG+GK+T+L +L +G+I+V G P
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILM--TLEPIDEGQIQVEGEQLYHMPGR 70
Query: 698 QETFVRVS-----------GYCEQTDIHSPHITIEESLFFSAWLRLAP-QINSKTKADCV 745
V G Q+ PH T+ +++ AP + +A+
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNV------TEAPVLVLGMARAEAE 124
Query: 746 NHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAA 805
++ +++ G+ + +P + LS Q++R+ I L P ++ DE T+ LD
Sbjct: 125 KRAMELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 806 AIVMRAVKNVA-DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
V+ ++ +A + T++ H+ + F + + GRI+ G
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHE--MGFAREFADRVCFFDKGRIVEQG 229
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 29/239 (12%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY-------PKIQ 698
+ D + + G + +MG+SG+GK+T++ +L + +G++ ++G +++
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLL--NRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 699 ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK 758
E + Q+ PH+T+ ++ F L + KA L + G++
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKA------LDALRQVGLE 155
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM-RAVKNVAD 817
P LS R+R+ + L NP I+ MDE + LD + VK A
Sbjct: 156 NYAHSYP--DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213
Query: 818 TGRTIVCTIHQPSIDIFESF---DELILLKTGGRIIYSGP---LGNHSSRVIE-YFEGI 869
RTIV H D+ E+ D + +++ G + P L N ++ + +F G+
Sbjct: 214 HQRTIVFISH----DLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGV 268
|
Length = 400 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 19/155 (12%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVR--VSGYCE 709
T+ G A++G SGAGK+TLL+++AG T G + +NG R VS +
Sbjct: 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 710 QTDIHSPHITIEESLFFSAWLRLAP--QINSKTKADCVNHVLKTI-ELDGIKESLVGIPG 766
+ ++ H+T+ +++ L L P ++N+ + L I GI++ L +PG
Sbjct: 79 ENNLF-SHLTVAQNI----GLGLNPGLKLNAAQR-----EKLHAIARQMGIEDLLARLPG 128
Query: 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
LS QR+R+ + LV I+ +DEP + LD
Sbjct: 129 --QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 775 RKRLTIGVELVANPSIIFMDEPTTGLD 801
++RL I LV +P ++FMDEPT GLD
Sbjct: 157 QQRLQIARNLVTHPRLVFMDEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 20/214 (9%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQET 700
L L ++ + G LT ++G G GK++LL + G + G K P + T
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAT 73
Query: 701 FVRVSGYCEQTDIHSP---HITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
R + Y P + T+EE++ F + P + KA L+ ++D +
Sbjct: 74 RSR-NRYSVAYAAQKPWLLNATVEENITFGS-----PFNKQRYKAVTDACSLQP-DIDLL 126
Query: 758 ---KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA--V 812
++ +G G++ LS QR+R+ + L N +I+F+D+P + LD + +M+ +
Sbjct: 127 PFGDQTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGIL 185
Query: 813 KNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846
K + D RT+V H+ + D +I +K G
Sbjct: 186 KFLQDDKRTLVLVTHK--LQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 28/199 (14%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGC-FKGEIKVNGYPKIQET 700
Q L +V+ + +TAL+G SG GK+T + L C +G++ + G I E
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG-EDIYEP 84
Query: 701 FVRVSGYCEQTDI--HSPH---ITIEESLFFSAWLRLAPQINSKTKAD---CVNHVLKTI 752
V V + + P+ ++I +++ + P+I+ K D V + L++
Sbjct: 85 DVDVVELRKNVGMVFQKPNPFPMSIYDNVAY------GPRIHGANKKDLDGVVENALRSA 138
Query: 753 ELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD----ARAAAIV 808
L + P +S LS Q++RL I L P II DEPT+ LD AR ++
Sbjct: 139 ALWDETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLI 197
Query: 809 MRAVKNVADTGRTIVCTIH 827
M K+ TIV H
Sbjct: 198 MNLKKDY-----TIVIVTH 211
|
Length = 258 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 4e-04
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 198
+SGG+++R+ R + P + +D+ T+ LDI+ +++ L+ LA T+++ L
Sbjct: 98 LSGGERQRVLLARALAQEP-PILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156
Query: 199 QPSPETFHLFDDIILMAEGKILYHG 223
+ D +IL+ +G+I+ G
Sbjct: 157 DLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 140 SGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL----- 194
SGGQ++R+ R + + P K + D+ T+ LD+S QI+ L+ L T+L
Sbjct: 147 SGGQRQRVAIARALALNP-KLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205
Query: 195 ISLLQPSPETFHLFDDIILMAEGKILYHG 223
+ ++ + D + +M GKI+ G
Sbjct: 206 LGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 17/102 (16%)
Query: 128 DTLVGDAIRRGISGGQKRRLTTGREMLV-GPIKAMFMDKITNGLDISTSFQIVTCLQHLA 186
DT + + + R SGG+++RL R +L PI + +D+ T GLD T Q+++ +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPI--VLLDEPTVGLDPITERQLLSLI--FE 143
Query: 187 HITDATILISLLQPSPETFHL-----FDDIILMAEGKILYHG 223
+ D T++ T HL D I+ + GKI+ G
Sbjct: 144 VLKDKTLIWI-------THHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 19/104 (18%)
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL---- 194
ISGGQK+R+ R +L K + +D+ T+ LD T +IV +L ++ D TI+
Sbjct: 612 ISGGQKQRIALARALLT-DSKVLILDESTSNLDTITEKKIV---NNLLNLQDKTIIFVAH 667
Query: 195 -ISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE---FFES 234
+S+ + S D II++ GKI+ G + +L+ F+ S
Sbjct: 668 RLSVAKQS-------DKIIVLDHGKIIEQGSHDELLDRNGFYAS 704
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 140 SGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITD-ATILISLL 198
SGGQ++R+ R +++ P + + +D+ T+ LD S Q++ L+ L + + IS
Sbjct: 428 SGGQRQRIAIARALILKP-ELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFIS-- 484
Query: 199 QPSPETFH-------LFDDIILMAEGKILYHGPRESVLE 230
H L +I+M +GKI+ GP E+V
Sbjct: 485 -------HDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695
TL G + AL+G +GAGK+TL+ ++AG G +++ G P
Sbjct: 33 TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNP 74
|
Length = 510 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-04
Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 45/253 (17%)
Query: 630 LEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEI 689
+E R A+ Q + DV+ + G A++G +GAGKTTL+++L ++ G+I
Sbjct: 335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQI 392
Query: 690 KVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
++G + ++ ++ S +++ F+ +R ++ + D V
Sbjct: 393 LIDG--------IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVY 442
Query: 750 KTIE--------LDGIK--ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799
+ + L ++LVG G + LS +R+RL I ++ N I+ +DE T+
Sbjct: 443 EAAKAAAAHDFILKRSNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSA 501
Query: 800 LDARAAAIVMRAVKNVADTGRTIV-----CTIHQPSIDIF---------ESFDELI---- 841
LD A V A+ + T + T+ + +F SF ELI
Sbjct: 502 LDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDG 561
Query: 842 ----LLKTGGRII 850
LL+ G +
Sbjct: 562 RFYKLLRRSGLLT 574
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 140 SGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL----- 194
SGGQ++R+ R + + P K + D+ + LD+S QI+ L+ L T L
Sbjct: 111 SGGQRQRIGIARALALNP-KLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHD 169
Query: 195 ISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
+S+++ ++ D I +M GKI+ GP E V
Sbjct: 170 LSVVR------YISDRIAVMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN-VADTGRTIVCTIHQPSIDI 833
++RL I LV P ++FMDEPT GLD A ++ ++ V D G ++ H +
Sbjct: 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVAR 213
Query: 834 FESFDELILLKTGGRIIYSG 853
+ L++++ GR++ SG
Sbjct: 214 LLA-QRLLVMQQ-GRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 6e-04
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 140 SGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL----- 194
SGG ++R+ + + P K + D+ T LD++ QI+ L+ L ++
Sbjct: 155 SGGMRQRVMIAMALALNP-KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD 213
Query: 195 ISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
+ ++ + D + +M G+I+ GP E + +
Sbjct: 214 LGVV------AEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV-ADTGRTIVCTIHQ 828
LS Q++R+ I L NPS+I +DE T+ LD A ++ V+ V ++ TI+ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201
Query: 829 PSIDIFESF--DELILLKTG 846
D+ E+ D +I++ G
Sbjct: 202 ---DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 6e-04
Identities = 45/213 (21%), Positives = 93/213 (43%), Gaps = 15/213 (7%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETF---- 701
L+ V+ ++ G +++G +G+GK+T ++ G F+G++K++G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLTAENVWNLR 80
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
++ + D T+E+ + F + P+ + D L + + K
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVD---EALLAVNMLDFKTR- 136
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821
+ LS Q++R+ + + P II +DE T+ LD +MR + + + +
Sbjct: 137 ----EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 822 IVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
V +I +D S D ++++K G I + P
Sbjct: 193 TVLSITH-DLDEAASSDRILVMKAGEIIKEAAP 224
|
Length = 277 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 28/199 (14%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSG--CFKGE-IKVN 692
+ L+++ + +TAL+G SG GK+T L D++ G K G ++G+ I N
Sbjct: 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79
Query: 693 GYPKIQETFVRVSGYCEQTDIHSPHI-TIEESLFFSAWLRLAPQIN---SKTKADCV--N 746
+ ++ R G QT +P + +I +++ + P+I+ K K D +
Sbjct: 80 NFDILE--LRRKIGMVFQTP--NPFLMSIYDNISY------GPKIHGTKDKKKLDEIVEQ 129
Query: 747 HVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAA 806
+ K+ + +K+ L LS Q++RL I L P++I MDEPT+ LD +
Sbjct: 130 SLKKSALWNEVKDKLN--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTG 187
Query: 807 IVMRAVKNVADTGRTIVCT 825
+ + N+ ++ I+ T
Sbjct: 188 KIEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 52/193 (26%), Positives = 80/193 (41%), Gaps = 30/193 (15%)
Query: 649 VTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG-----YPKIQETFVR 703
++ +R G + L+G +GAGK+TLL +AG G G I+ G + R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPG--SGSIQFAGQPLEAWS--AAELAR 69
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI-ELDGIKESLV 762
Y Q +P + + L KT+ + V L + E G+ + L
Sbjct: 70 HRAYLSQQQ--TPPFAMP------VFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL- 120
Query: 763 GIPGVSGLS-TE-QRKRLTIGVEL----VANPS--IIFMDEPTTGLDARAAAIVMRAVKN 814
G V+ LS E QR RL V L NP+ ++ +DEP LD A + R +
Sbjct: 121 GRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE 178
Query: 815 VADTGRTIVCTIH 827
+ G +V + H
Sbjct: 179 LCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 7e-04
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 198
+SGGQ++R+ R +L P + +D+ T+ LD T I+ L+ LA I+I+
Sbjct: 97 LSGGQRQRIAIARALLRDP-PILILDEATSALDPETEALILEALRALAKGK-TVIVIA-- 152
Query: 199 QPSPETFHLFDDIILMAEGK 218
T D II++ +G+
Sbjct: 153 -HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 8e-04
Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 55/173 (31%)
Query: 9 GFGLSVISWFCTGLVT---GEVSYNGYKLEEFVPQKLSA------YVSQYDLHIPEMTVR 59
G G S I+ G+ + G+++ L VP + V Q+D E TVR
Sbjct: 77 GAGKSTIARMILGMTSPDAGKITV----LGVPVPARARLARARIGVVPQFDNLDLEFTVR 132
Query: 60 ETL-DFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNL 118
E L F Y +S RE EA +IP L
Sbjct: 133 ENLLVFGRYFG-----------MSTREIEA-VIPSL-----------------------L 157
Query: 119 KILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLD 171
+ L+ AD V D +SGG KRRLT R ++ P + + +D+ T GLD
Sbjct: 158 EFARLESKADARVSD-----LSGGMKRRLTLARALINDP-QLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 8e-04
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 19/100 (19%)
Query: 137 RGISGGQKRRLTTGREMLV-GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT-IL 194
R +SGG++RRL R +L P+ + +D+ T GLD T QI+ L H + T ++
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPL--LLLDEPTEGLDAETERQILELL--AEHAQNKTVLM 529
Query: 195 IS-----LLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229
I+ L Q FD I +M G+I+ G + +L
Sbjct: 530 ITHRLTGLEQ--------FDRICVMDNGQIIEQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 133 DAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 192
D + R SGG ++RL R ++ P + +FMD+ T GLD+S +++ L+ L
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRP-RLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLA 204
Query: 193 ILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
++I + L D +++M +G+++ G + VL+
Sbjct: 205 VVIVTHDLAVARL-LADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 9e-04
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 23/119 (19%)
Query: 123 LDICADTLVGDAIRRGISGGQKRR--LTTGREMLVGPIKAMFMDKITNGLDISTSFQIVT 180
LD+ + + +R+ +S GQ+ R L L+ P K +F+D+ T GLD++ I
Sbjct: 144 LDL--EGFLKWPVRK-LSLGQRMRAELAAA---LLHPPKVLFLDEPTVGLDVNAQANIRE 197
Query: 181 CLQHLAHITDATILISLLQPSPETFHLFDDI-------ILMAEGKILYHGPRESVLEFF 232
L+ AT+L+ T H+FDDI +L+ +G++++ G + E F
Sbjct: 198 FLKEYNEERQATVLL--------TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248
|
Length = 325 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 9e-04
Identities = 41/160 (25%), Positives = 60/160 (37%), Gaps = 49/160 (30%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
+D V+ +++ G L+G SG GK+TL ++ G TSG EI G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EILFEGK--------- 75
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763
I +K + VL+ +E G+ E +
Sbjct: 76 -------------------------------DITKLSKEERRERVLELLEKVGLPEEFLY 104
Query: 764 -IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA 802
P LS QR+R+ I L NP +I DEP + LD
Sbjct: 105 RYP--HELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 9e-04
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 23/164 (14%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPKIQET 700
+L++++ +LR G + G SG GK+TLL ++A TSG F+GE ++ E
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-DISTLKP--EI 78
Query: 701 FVRVSGYCEQTDIHSPHI---TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
+ + YC QT P + T+ ++L F W QI ++ L +E +
Sbjct: 79 YRQQVSYCAQT----PTLFGDTVYDNLIF-PW-----QIRNQQPDP--AIFLDDLERFAL 126
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
++++ ++ LS +++R+++ L P ++ +DE T+ LD
Sbjct: 127 PDTILTKN-IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 65/194 (33%)
Query: 37 FVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDI 96
++PQ+ Y P TVRE LD+ + +G+ +E +AR+
Sbjct: 76 YLPQEFGVY--------PNFTVREFLDYIAWLKGI----------PSKEVKARV------ 111
Query: 97 DTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156
D L+++ L A +G +SGG +RR+ + LVG
Sbjct: 112 ------------------DEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIA-QALVG 147
Query: 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDI----- 211
+ +D+ T GLD + L L D +++S H+ +D+
Sbjct: 148 DPSILIVDEPTAGLDPEERIRFRNLLSELG--EDRIVILST--------HIVEDVESLCN 197
Query: 212 --ILMAEGKILYHG 223
++ +GK+++ G
Sbjct: 198 QVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 47/222 (21%), Positives = 79/222 (35%), Gaps = 64/222 (28%)
Query: 9 GFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQKLSAYVSQ-YDLHIPEMTVRETLDF 64
G G + ++ GL +G + NG ++ +K YV Q D + +VRE L
Sbjct: 36 GAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLL 95
Query: 65 STYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD 124
L+ E +T +K ++ LK
Sbjct: 96 G-------------LKELDAGNE-------QAETVLKDLDLYALK--------------- 120
Query: 125 ICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQH 184
+ +SGGQK+RL +L G + D+ T+GLD ++ ++
Sbjct: 121 --------ERHPLSLSGGQKQRLAIAAALLSGK-DLLIFDEPTSGLDYKNMERVGELIRE 171
Query: 185 LAHITDATILISLLQPSPETFHLF-------DDIILMAEGKI 219
LA A I+I+ H + D ++L+A G I
Sbjct: 172 LAAQGKAVIVIT---------HDYEFLAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 52/204 (25%)
Query: 25 GEVSYNGYKLEEFVPQKLSA-------YVSQ-YDLHIPEMTVRETLDFSTYCQGVGSRAD 76
GEV NG L + ++L+ +V Q ++L +P++TV E ++
Sbjct: 60 GEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLENVE------------- 105
Query: 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGL-DICADTLVGDAI 135
+ L ++G+ R R + L L++LGL D +
Sbjct: 106 LPLLIAGKSAGRR----------------KRAAEEL-----LEVLGLEDRLLKKKPSE-- 142
Query: 136 RRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILI 195
+SGGQ++R+ R ++ P K + D+ T LD T+ +++ L+ L TI++
Sbjct: 143 ---LSGGQQQRVAIARALINNP-KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM 198
Query: 196 SLLQPSPETFHLFDDIILMAEGKI 219
PE D +I + +GKI
Sbjct: 199 VT--HDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 138 GISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL 197
+SGG+K+R+ R + P + + +D+ + LD + Q++ L+ + + ++
Sbjct: 131 QLSGGEKQRVALARALAAQP-ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189
Query: 198 LQPSPETFHLFDDIILMAEGKILYHG 223
S E +L D I++M +G++ Y G
Sbjct: 190 HDLS-EAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 140 SGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL-IS-- 196
SGGQ++R+ R + + P K + +D+ + LD+S Q++ L+ L T L IS
Sbjct: 431 SGGQRQRVAIARALALEP-KLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD 489
Query: 197 ---LLQPSPETFHLFDDIILMAEGKILYHGPRESVLEF 231
+ + D + +M +G+I+ GP E V E
Sbjct: 490 LAVVRYIA-------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 36/118 (30%)
Query: 128 DTLVGDAIRRGI--SGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHL 185
DT++G+ RG+ SGGQ++R+ R +L P + +D+ T+ LD + + L+ L
Sbjct: 129 DTVIGE---RGVKLSGGQRQRIAIARALLKDP-PILILDEATSALDTESERLVQAALERL 184
Query: 186 ---------AH----ITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
AH I +A D I+++ +GKI+ G E +L
Sbjct: 185 MKNRTTFVIAHRLSTIENA-----------------DRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 138 GISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL 197
G+SGGQ++RL R + V P + + MD+ T+ LD +++ +I + L +T TI+I +
Sbjct: 148 GLSGGQQQRLCIARALAVEP-EILLMDEPTSALDPASTARIEDLMTDLKKVT--TIII-V 203
Query: 198 LQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
+ + D G ++ HGP + +
Sbjct: 204 THNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 198
+SGG ++++ GR +L P + + +D+ T G+D+ F+I + LA I+IS
Sbjct: 392 LSGGNQQKVIIGRWLLTQP-EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIIS-- 448
Query: 199 QPSPETFHLFDDIILMAEGKI 219
PE + D I++M+ G +
Sbjct: 449 SEMPELLGITDRILVMSNGLV 469
|
Length = 491 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR 679
DV+ L PG + ++G SG+GKTTLL+ L+ R
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55
|
Length = 258 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 18/216 (8%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYPKIQETF--- 701
L+D++ ++ G TAL+G +G+GK+T+ ++ G +I V+G +T
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82
Query: 702 -VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE-LDGIKE 759
+V + D T+ + + F R P+ V VL + LD I
Sbjct: 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK---IVRDVLADVGMLDYIDS 139
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA-DT 818
P + LS Q++R+ I L P II +DE T+ LD +++ ++ +
Sbjct: 140 E----P--ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKN 193
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
T++ H ID D++++L G + P
Sbjct: 194 NLTVISITH--DIDEANMADQVLVLDDGKLLAQGSP 227
|
Length = 282 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 198
+SGGQK+R+ + V P K + +D+ T+ LD + QI+ ++ L + T+ IS+
Sbjct: 144 LSGGQKQRVAIAGILAVEP-KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTV-ISIT 201
Query: 199 QPSPETFHLFDDIILMAEGKILYHG-PRE 226
E D ++++ +GK+L G P E
Sbjct: 202 HDIDEANMA-DQVLVLDDGKLLAQGSPVE 229
|
Length = 282 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 20/161 (12%)
Query: 658 LTALMGVSGAGKTTLL-------DVLAGRKTSGC--FKGEIKVNGYPKI-QETFVRVS-G 706
+TA++G SG GK+T L D++ T+G F GE + Y K E +R G
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGE---DIYGKFTDEVLLRKKIG 123
Query: 707 YCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-DGIKESLVGIP 765
Q P +I +++ + RL + K + V L+ L D + + L
Sbjct: 124 MVFQKPNPFPK-SIFDNIAYGP--RLHGINDKKQLEEIVEKSLRKAALWDEVSDRLD--K 178
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAA 806
GLS Q++RL + L P I+ +DEPT+ LD +A A
Sbjct: 179 NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV-AD 817
E+LVG S LS Q++R++I ++ NP I+ +DE T+ LD ++ +V + + N+ +
Sbjct: 570 ETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGN 628
Query: 818 TGRTIVCTIHQPS 830
R + H+ S
Sbjct: 629 ENRITIIIAHRLS 641
|
Length = 1466 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 16/200 (8%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNGY 694
K + L + +TAL+G SG GK+T L D++ G +G +
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 695 PKIQETFVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE 753
P +R G Q P +I E++ + LRLA + + V LK
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAA 133
Query: 754 L-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV 812
+ D +K+ L LS Q++R+ I L P +I +DEPT+ LD ++ + +
Sbjct: 134 IWDEVKDHLH--ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML 191
Query: 813 KNVADTGRTIVCT--IHQPS 830
+ D I+ T +HQ S
Sbjct: 192 LELRDQYTIILVTHSMHQAS 211
|
Length = 252 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 37/197 (18%)
Query: 626 IDTPLEMR------RRECGLAHKLQL--LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLA 677
++T LE+R R G + + + ++ TLR G A++G +G+GK+TL +LA
Sbjct: 1 VETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 678 G--RKTSGCFKGEIKVNGYP-----------KIQETFVRVSGYCEQTDIHSPHITIEESL 724
G TS GE+ ++ +P +I+ F S T + +P I + L
Sbjct: 61 GMIEPTS----GELLIDDHPLHFGDYSYRSQRIRMIFQDPS-----TSL-NPRQRISQIL 110
Query: 725 FFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVEL 784
F LRL + + + + L+ + L + + P + L+ Q++RL + L
Sbjct: 111 DFP--LRLNTDLEPEQREKQIIETLRQVGL--LPDHASYYPHM--LAPGQKQRLGLARAL 164
Query: 785 VANPSIIFMDEPTTGLD 801
+ P +I DE LD
Sbjct: 165 ILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYP 695
+ DV+ +R G + + G+ G G+T L + L G R + GEI ++G P
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDGKP 63
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 16/168 (9%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNGYPK 696
+ ++D++ + +TAL+G SG GK+T L D++ ++ G EI G
Sbjct: 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG----EILYEGLNI 90
Query: 697 IQETFVRVSGYCEQTDIHSPHITIEESLF--FSAWLRLAPQINSKTKADCVNHVLKTIEL 754
+ V+ E + +S++ + L+ A + + V L L
Sbjct: 91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAAL 150
Query: 755 -DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
D +K+ L LS Q++RL I L P+++ +DEP + LD
Sbjct: 151 WDEVKDRLHS--SALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 26/224 (11%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNGY-- 694
Q+L D+ + +TA +G SG GK+T L D + K KGE+ ++G
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKV----KGELDIDGIDV 74
Query: 695 --PKIQETFVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKT 751
+R G Q P +I +++ + +L +K K D + V K+
Sbjct: 75 YSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGP--KLHGLAKNKKKLDEI--VEKS 129
Query: 752 IELDGIKESLVGIPGVSG--LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809
+ G+ E L S LS Q++RL I + P+++ MDEP + LD A ++
Sbjct: 130 LTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIE 189
Query: 810 RAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
++ + TI+ H S+ + + + GRI+
Sbjct: 190 NLIQEL-KKNFTIIVVTH--SMKQAKKVSDRVAFFQSGRIVEYN 230
|
Length = 251 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 140 SGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISL-- 197
SGGQ++R+ R LV + +D+ G+D T I L+ L TIL+
Sbjct: 134 SGGQQQRVLLAR-ALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHD 191
Query: 198 LQPSPETFHLFDDIILMAEGKILYHG 223
L E FD ++L+ ++ G
Sbjct: 192 LGLVLE---YFDRVLLLN-RTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 140 SGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILIS--L 197
SGG K+RL + +L P + + +D+ T+GLD + + L+ L TIL+S +
Sbjct: 97 SGGMKQRLALAQALLHDP-ELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHI 154
Query: 198 LQPSPETFHLFDDIILMAEGKI 219
L+ E L D + ++ G+I
Sbjct: 155 LE---EAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 49/224 (21%)
Query: 12 LSVISWFCTGLVTGEVSYNGYKLEEFVP---QKLSAYVSQYDLHIPEMTVRETLDFSTYC 68
L+++ F GE+ NG L + P +K ++VSQ + ++ T+RE + +
Sbjct: 364 LNLLLGFLAP-TQGEIRVNGIDLRDLSPEAWRKQISWVSQ-NPYLFAGTIRENILLARP- 420
Query: 69 QGVGSRADIL--LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDIC 126
S +I+ L+ +G E +P PD GLD
Sbjct: 421 --DASDEEIIAALDQAGLLE---FVPKPD--------------------------GLD-- 447
Query: 127 ADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLA 186
T++G+ G+SGGQ +RL R L+ P + +D+ T LD T I+ LQ LA
Sbjct: 448 --TVIGEG-GAGLSGGQAQRLALARA-LLSPASLLLLDEPTAHLDAETEQIILQALQELA 503
Query: 187 HITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
T+L+ + E D I+++ G+++ G E + E
Sbjct: 504 K--QKTVLVITHR--LEDAADADRIVVLDNGRLVEQGTHEELSE 543
|
Length = 559 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 36/118 (30%)
Query: 128 DTLVGDAIRRG--ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHL 185
DT+VG+ RG +SGG+K+R+ R +L P + +D+ T+ LD T +I L+ +
Sbjct: 128 DTIVGE---RGLKLSGGEKQRVAIARAILKNPP-ILLLDEATSALDTHTEREIQAALRDV 183
Query: 186 ---------AH----ITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
AH I +A D II++ +G+I+ G E +L
Sbjct: 184 SKGRTTIVIAHRLSTIVNA-----------------DKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 122 GLDICADTLVGDAIRRGISGGQKRRLTTGREMLV-GPIKAMFMDKITNGLDISTSFQIVT 180
L + DT +G+ +SGGQ++RL R +L PI + +D+ T+ LD + +
Sbjct: 454 KLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPI--LILDEATSALDNESERLVQA 510
Query: 181 CLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
L+ L + T L+ + S T D I++M +G+I+ G +L
Sbjct: 511 ALERL--MQGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 647 DDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR 679
DV+ L PG + ++G SG+GKTTLL ++GR
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR 55
|
Length = 258 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILI 195
+SGGQ++R+ R + + P K M D++T+ LD +++ ++ LA D T+L+
Sbjct: 147 LSGGQQQRVAIARALAMRP-KVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLL 202
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 50/185 (27%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNGYPK 696
+L +V + +TAL+G SG GK+T + D++ G + +G I ++G
Sbjct: 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH----EGHIYLDG--- 69
Query: 697 IQETFVRVSGYCEQTDIHSPHITIEE-----------------SLF--FSAWLRLAPQIN 737
DI+ P + + E S+F + LR+ + +
Sbjct: 70 --------------VDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDD 115
Query: 738 SKTKADCVNHVLKTIEL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEP 796
+ V LK L D +K+ L GLS Q++RL I + +P +I MDEP
Sbjct: 116 EDFIEERVEESLKAAALWDEVKDKL--DKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173
Query: 797 TTGLD 801
+ LD
Sbjct: 174 CSALD 178
|
Length = 250 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 829
LS +R+RL I L+ +P I+ +DE T+ LD A V A+ + GRT H+
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRL 530
Query: 830 S-------IDIFE--------SFDELILLKTGGR 848
S I +F+ SFDEL+ GGR
Sbjct: 531 STVRNADRILVFDNGRVVESGSFDELVAR--GGR 562
|
Length = 588 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697
LL D++ T+ PG L+G +GAGK+TLL ++AG +G + KI
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGSTVKI 65
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 35/173 (20%)
Query: 651 GTLRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGCFKGEIKVNGYPKIQETFVRVSGYCE 709
G++ + ++G +G GKTT + +LAG K G+I E + Y
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDE---GDI---------EIELDTVSYKP 67
Query: 710 QTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCV-----NHVLKTIELDGIKESLVGI 764
Q T+ + L S TK + K ++++ I + V
Sbjct: 68 QYIKADYEGTVRDLLS------------SITKDFYTHPYFKTEIAKPLQIEQILDREV-- 113
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817
LS + +R+ I L + I +DEP+ LD + + ++ A+
Sbjct: 114 ---PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 31/185 (16%)
Query: 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYPKIQETFVRVSG 706
+++ +R G + L GV GAG+T L + L G R G G I +NG +E +
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIMLNG----KEINALSTA 333
Query: 707 YC-EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLV--- 762
+ ++ P L+ A L + + T H + + +E+ V
Sbjct: 334 QRLARGLVYLPEDRQSSGLYLDAPLAW--NVCALT------HNRRGFWIKPARENAVLER 385
Query: 763 -----GIP------GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
I LS ++++ I L A+P ++ +DEPT G+D A + +
Sbjct: 386 YRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQL 445
Query: 812 VKNVA 816
++++A
Sbjct: 446 IRSIA 450
|
Length = 510 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 133 DAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 192
D + R SGG ++RL R ++ P + +FMD+ T GLD+S +++ L+ L + D
Sbjct: 143 DDLPRAFSGGMQQRLQIARNLVTRP-RLVFMDEPTGGLDVSVQARLLDLLRGL--VRDLG 199
Query: 193 ILISLLQPSPETFHLFDD-IILMAEGKILYHGPRESVLE 230
+ + ++ L +++M +G+++ G + VL+
Sbjct: 200 LAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 66/270 (24%), Positives = 110/270 (40%), Gaps = 81/270 (30%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLL-DVL---------AGRKTSGCFKGE------- 688
L ++ + GVLT + GVSG+GK++L+ D L ++ G
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70
Query: 689 --IKVNGYP-----------------KIQETFVRVSG---YCEQT-DIHSPH-------- 717
I ++ P +I+E F V Y +T ++
Sbjct: 71 KVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLD 130
Query: 718 ITIEESL-FFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776
+T+EE+L FF P+I K + L + L IK +G P + LS + +
Sbjct: 131 MTVEEALEFFEN----IPKIARKLQT------LCDVGLGYIK---LGQPATT-LSGGEAQ 176
Query: 777 RLTIGVELVANPS----IIFMDEPTTGL---DARAAAIVMRAVKNVADTGRTIVCTIHQP 829
R+ + EL + S + +DEPTTGL D + V++ + D G T+V H
Sbjct: 177 RIKLAKEL-SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQR---LVDKGNTVVVIEHN- 231
Query: 830 SIDIFESFDELILL-----KTGGRIIYSGP 854
+D+ + D +I L GG+++ SG
Sbjct: 232 -LDVIKCADWIIDLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG 819
+ +G GV+ LS QR+R+ I ++ + I+ +DE T+ LDA + +V +A++ G
Sbjct: 468 TYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE-TLMKG 525
Query: 820 RTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSS 860
RT + H+ + + D ++++ GRI+ G H+
Sbjct: 526 RTTLIIAHRLATVL--KADRIVVMDQ-GRIVAQ---GTHAE 560
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 118 LKILGL-DICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSF 176
L+ +GL + D L +A+ +SGGQ++RL R + + P K + +D+ T+ LD +S
Sbjct: 123 LQKVGLFEEVKDKLKQNAL--ALSGGQQQRLCIARALAIKP-KLLLLDEPTSALDPISSG 179
Query: 177 QIVTCLQHLAHITDATILISLLQPSPET------FHLFDDIILMAEGKILYHGPRESVLE 230
I L+ L+H ++ +Q FHL ++I E K + P++ +
Sbjct: 180 VIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHL-GELIEFGESKEFFENPKQEKTK 238
Query: 231 FFESCGF 237
+ S F
Sbjct: 239 AYLSGAF 245
|
Length = 246 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR 679
DV+ L PG + ++G SG+GK+TLL LAGR
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 14/170 (8%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTSGCFKGEIKVNG 693
HK Q+L ++ +TA++G SG GK+TLL D+++G + G + +
Sbjct: 15 HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIY 74
Query: 694 YPKIQETFVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI 752
P + +R G Q P + F L Q + V L+
Sbjct: 75 SPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQ---SRLDEVVEKSLRQA 131
Query: 753 EL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801
L D +K++L G++ LS Q++RL I L P +I MDEP + LD
Sbjct: 132 ALWDEVKDNLHK-SGLA-LSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179
|
Length = 251 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1218 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.98 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.98 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.98 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.98 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.98 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.97 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.97 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.97 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.97 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.97 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.96 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.96 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.96 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.96 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.96 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.96 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.96 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.96 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.96 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.96 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.96 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.96 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.96 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.96 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.96 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.96 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.96 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.96 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.96 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.96 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.96 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.96 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.95 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.95 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.95 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.95 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.95 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.95 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.95 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.95 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.95 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.95 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.95 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.95 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.95 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.95 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.95 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.95 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.95 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.95 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.95 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.95 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.95 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.95 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.95 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.95 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.95 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.95 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.95 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.95 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.95 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.95 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.95 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.95 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.94 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.94 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.94 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.94 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.94 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.94 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.94 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.94 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.94 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.94 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.94 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.94 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.94 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.94 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.94 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.94 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.94 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.94 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.94 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.94 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.94 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.94 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.94 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.94 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.94 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.94 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.94 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.94 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.94 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.94 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.94 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.94 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.94 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.94 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.94 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.94 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.94 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.94 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.94 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.94 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.94 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.94 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.94 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.94 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.93 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.93 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.93 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.93 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.93 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.93 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.93 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.93 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.93 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.93 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.93 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.93 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.93 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.93 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.93 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.93 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.93 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.93 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.93 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.93 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.93 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-196 Score=1779.49 Aligned_cols=1172 Identities=47% Similarity=0.811 Sum_probs=1054.9
Q ss_pred CCCCCCCCCCcchhhccccee------EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCch
Q 000937 2 SSLNDRIGFGLSVISWFCTGL------VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRA 75 (1218)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~g~------~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~ 75 (1218)
-.++||||||||+|.+-..|. .+|+|+|||++.++...++.++|++|+|+|+|.|||||||+||++||+++.+.
T Consensus 144 ~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~ 223 (1391)
T KOG0065|consen 144 TLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRY 223 (1391)
T ss_pred EEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCcccc
Confidence 357899999999999999984 35789999999999888889999999999999999999999999999987764
Q ss_pred hhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 76 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
+ +.+|+|+.+ ..+|+++++|||+||+||+|||+.+||+||||||||||| |+++
T Consensus 224 ~---~~~R~e~~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~-E~~v 276 (1391)
T KOG0065|consen 224 D---EVSRREKLA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIG-EMLV 276 (1391)
T ss_pred c---cccHHHHHH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeee-eeee
Confidence 3 445555421 157999999999999999999999999999999999999 9999
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhC
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESC 235 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~l 235 (1218)
.|++++||||+|+||||+|+++++++||++++..++|.+++||||+++++++||+|++|++|++||+||++++++||+++
T Consensus 277 ~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~ 356 (1391)
T KOG0065|consen 277 GPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDM 356 (1391)
T ss_pred cCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC-------cCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccc
Q 000937 236 GFRCPDRKA-------VISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSL 308 (1218)
Q Consensus 236 G~~~p~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1218)
||.||++++ ++++.++.++|...+.+....+++++.+.|.+++.+++...+.+.+.++.+..+.....+.+.+
T Consensus 357 Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v 436 (1391)
T KOG0065|consen 357 GFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSV 436 (1391)
T ss_pred CccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceec
Confidence 999999998 5666677777776666666677899999999999999999888887777766666677788999
Q ss_pred cHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhh
Q 000937 309 SRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSL 388 (1218)
Q Consensus 309 s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~ 388 (1218)
+.|.|++.|++|.+...+||..++..++++.+++|+++|++|++... .+..+.+.+.+++||++++.+++++++++..+
T Consensus 437 ~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~-~t~~~~~~~~~~lffsll~~~f~~laEi~~~~ 515 (1391)
T KOG0065|consen 437 PYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM-STTSGGYSRGGALFFALLFNLFNGLAEIALTF 515 (1391)
T ss_pred cHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC-cccccchhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998773 34446788999999999999999999999999
Q ss_pred hccceeeecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHh---hhHHHHHH
Q 000937 389 ERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIE---SSVDHCAE 465 (1218)
Q Consensus 389 ~~r~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~---~~~~~~~~ 465 (1218)
+++|+|+|||...+|++|++.++.+++++|+.++..++|.+|+||++||.+++.+||. +++++++++ ++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~--~fL~lf~~~~~~s~lFr~ia 593 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFI--QFLFLFLCQFCMSGLFRFIA 593 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 888887766 88999999
Q ss_pred hcccchhhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhccccccc-------------------C---------
Q 000937 466 TLKIDQFMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKIL-------------------F--------- 517 (1218)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~-------------------~--------- 517 (1218)
+++++.. .|+..+++.+++..+++||.+|...||+|+.|..|.++. .
T Consensus 594 ~l~~t~~-----~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~ 668 (1391)
T KOG0065|consen 594 SLSRTLS-----IANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNI 668 (1391)
T ss_pred HhcchHH-----HHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccccc
Confidence 9999999 999999999999999999999999999998888776642 0
Q ss_pred ---C------CcccHHHhhhccCcc-----cCCcchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccCCccccc
Q 000937 518 ---T------NTTIGREILKSRGLN-----FDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQ 583 (1218)
Q Consensus 518 ---~------~~~~G~~~l~~~~~~-----~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 583 (1218)
. ..+.|..+++..+|- +...|+|+++++++||.++|.+++.+++.++++....++....++.....
T Consensus 669 ~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~ 748 (1391)
T KOG0065|consen 669 SIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKK 748 (1391)
T ss_pred ccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhh
Confidence 0 134677888877765 77889999999999999999999999999999987776664433222111
Q ss_pred ccC-CCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEE
Q 000937 584 RSK-GSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALM 662 (1218)
Q Consensus 584 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~ 662 (1218)
... .+.... .+......+.+.+.+..|..+..++++||.+-++.+.+.+.+ .+++++|+|||+.++||.++|||
T Consensus 749 ~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~q----G~~~qLL~~V~G~~kPG~LTALM 823 (1391)
T KOG0065|consen 749 KVKSAGSSSE-IEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQ----GGTRQLLNNVSGAFKPGVLTALM 823 (1391)
T ss_pred cchhcccccc-ccccccccccccccccCCCccccccccceEEEEeCCcccccc----ccceEhhhcCceEecCCceeehh
Confidence 000 000000 000000001123345566667777777777777665544332 35789999999999999999999
Q ss_pred cCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHH
Q 000937 663 GVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKA 742 (1218)
Q Consensus 663 G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~ 742 (1218)
|+||||||||||+|+||...|.++|+|++||.|..+..++|.+|||.|+|.|.+.+||+|.|.|+|.||++.+.+.+++.
T Consensus 824 G~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~ 903 (1391)
T KOG0065|consen 824 GESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKY 903 (1391)
T ss_pred cCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHH
Confidence 99999999999999999988889999999999988788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 000937 743 DCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANP-SIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821 (1218)
Q Consensus 743 ~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p-~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~t 821 (1218)
+.++++++.++|++++|.+||.+| +|||.+||||++||.+|+.+| .||||||||||||+.++..|++.+|++++.|+|
T Consensus 904 ~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqt 982 (1391)
T KOG0065|consen 904 EYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQT 982 (1391)
T ss_pred HHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCe
Confidence 999999999999999999999999 899999999999999999999 899999999999999999999999999999999
Q ss_pred EEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCCCCCCCCCCCcceeeecccchhhhhhhcH
Q 000937 822 IVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSASTEAELGLDF 901 (1218)
Q Consensus 822 vi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~ 901 (1218)
|+||+|||+.++++.||++++|++||++||.||++++++++++||++++|.+ |+...|||||++|+++...+.+...||
T Consensus 983 IlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~ 1061 (1391)
T KOG0065|consen 983 ILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDF 1061 (1391)
T ss_pred EEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccH
Confidence 9999999999999999999999999999999999999999999999998875 676679999999999988888788899
Q ss_pred HHHHHhhHHHHHHHHHHHHhhcCCCC-CCCCcccccccCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHH
Q 000937 902 SQIYEDSLLYENNKELVRQLSTSGGA-ARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLL 980 (1218)
Q Consensus 902 ~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~ 980 (1218)
++.|++|++++++++++++++++.+. ..+....++|++|+|.|++.++||+++.+||+|.|+.+|++.+++.|+++|+.
T Consensus 1062 a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~ 1141 (1391)
T KOG0065|consen 1062 AEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFT 1141 (1391)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheee
Confidence 99999999999999999999888777 66667778899999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 000937 981 FWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALY 1060 (1218)
Q Consensus 981 f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~ 1060 (1218)
||+++ .++++++|.+|++|+++++.+..+...+.+.+..||.+++||+++|+||+.+|++|++++|+|+.++++++|
T Consensus 1142 F~~~g---~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~ 1218 (1391)
T KOG0065|consen 1142 FWKVG---HNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLF 1218 (1391)
T ss_pred eeecC---CcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 468999999999999999998887777778888899999999999999999999999999999999999999
Q ss_pred hhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchHhHHHH
Q 000937 1061 VIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLY 1140 (1218)
Q Consensus 1061 ~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~ 1140 (1218)
.+++|+++||.+++.+|++|++.+++..++.+++|+|+.+++||.++|+.+.+++..++.+|||+++|++.||.||+|+|
T Consensus 1219 ~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy 1298 (1391)
T KOG0065|consen 1219 FLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMY 1298 (1391)
T ss_pred heeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHhhCCCccceeecc-------ccccHHHHHHhhhC----CCcchhHHHHHHHHHHHHHHHHHHHHH
Q 000937 1141 YLSPTSWTLEGLLTSQYGDIDKEIMVFI-------ENKTIASFLEEYFG----FHHDHLAVVAVALIVFPVVLASLFAFF 1209 (1218)
Q Consensus 1141 y~sp~~y~~~~l~~~ef~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~ 1209 (1218)
|+||+.|.+++++..+++|.+..|...+ ...++++|+..++| |.++.......+.+++.+++.+++.+.
T Consensus 1299 ~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~ 1378 (1391)
T KOG0065|consen 1299 YLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFN 1378 (1391)
T ss_pred ecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHH
Confidence 9999999999999999999888775433 22789999999999 877777667777788999999999999
Q ss_pred HHhcccccC
Q 000937 1210 VGRLNFQQR 1218 (1218)
Q Consensus 1210 l~~~~~~~r 1218 (1218)
++|.++++|
T Consensus 1379 ~~y~~~wrn 1387 (1391)
T KOG0065|consen 1379 IKYLNFWRN 1387 (1391)
T ss_pred HHHHHHHHh
Confidence 999999886
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-187 Score=1828.37 Aligned_cols=1207 Identities=49% Similarity=0.906 Sum_probs=1040.6
Q ss_pred CCCCCCCCCcchhhccccee------EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 3 SLNDRIGFGLSVISWFCTGL------VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g~------~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
-|.|+||||||||.+...|. ++|+|++||++.++...++.++||+|+|.|+|++||+|||.|+++|++++.+.+
T Consensus 195 ~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~ 274 (1470)
T PLN03140 195 LLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYD 274 (1470)
T ss_pred EEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCccc
Confidence 47899999999999999884 389999999999876667789999999999999999999999999997665444
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
++.+.+++++++++.|+++++.++|++...+...+..++++++.+||++|+||.||+...|||||||||||+||++++.+
T Consensus 275 ~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~ 354 (1470)
T PLN03140 275 LLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGP 354 (1470)
T ss_pred chhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCC
Confidence 44455667776666677778878887766666666678999999999999999999999999999999999999887776
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCG 236 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG 236 (1218)
| +||||||||+|||+.++.++++.|+++++..|+|+|+++|||+++++++||+|++|++|+++|+||++++++||+++|
T Consensus 355 p-~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lG 433 (1470)
T PLN03140 355 T-KTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCG 433 (1470)
T ss_pred C-cEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcC
Confidence 6 899999999999999999999999999987799999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC-------cCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCcccccccccc
Q 000937 237 FRCPDRKA-------VISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLS 309 (1218)
Q Consensus 237 ~~~p~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 309 (1218)
|.||+++| ++++.+++++|.....|....+++++.+.|++++.+++..++.+.+..+....+.......+..+
T Consensus 434 f~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s 513 (1470)
T PLN03140 434 FKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVP 513 (1470)
T ss_pred CCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCC
Confidence 99999999 44554444454333334444678899999999988777766655444332222222234568889
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCcc-chhhhhhhHHHHHHHHHHHHhhhcchhhhh
Q 000937 310 RWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVD-VFHANYFMGSLFYTLVILIVDGISEIPMSL 388 (1218)
Q Consensus 310 ~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~-~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~ 388 (1218)
++.|++.|++|+++..+||+..+..++++.+++|+++|++||+.+.+.. ....+.+.|++||++++.+++++.+++.++
T Consensus 514 ~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~ 593 (1470)
T PLN03140 514 KMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMI 593 (1470)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998875433 234567789999999999999999999999
Q ss_pred hccceeeecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHh---hhHHHHHH
Q 000937 389 ERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIE---SSVDHCAE 465 (1218)
Q Consensus 389 ~~r~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~---~~~~~~~~ 465 (1218)
.+|++|+|||..++|++++|+++++++++|+.++.+++|++|+|||+||++++.+||. |+++++++. ++++++++
T Consensus 594 ~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~--f~l~~~l~~~~~~~l~~~i~ 671 (1470)
T PLN03140 594 QRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFK--QLLLVFLIQQMAAGIFRLIA 671 (1470)
T ss_pred hccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 776666655 78899999
Q ss_pred hcccchhhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhccccccc--------------C--C-------Cccc
Q 000937 466 TLKIDQFMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKIL--------------F--T-------NTTI 522 (1218)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~--------------~--~-------~~~~ 522 (1218)
++++++. .|+.++++.++++++|+||+++.++||+|+.|..|.++. + . ....
T Consensus 672 a~~~~~~-----~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~ 746 (1470)
T PLN03140 672 SVCRTMI-----IANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRL 746 (1470)
T ss_pred HHcCcHH-----HHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCccc
Confidence 9999999 999999999999999999999999999998888887652 0 0 1347
Q ss_pred HHHhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccCCcccccccC----------CCCC--
Q 000937 523 GREILKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSK----------GSCD-- 590 (1218)
Q Consensus 523 G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-- 590 (1218)
|..+|+.+++..++.|+|+++++++++.++|.+++++++++.++...........+........ +...
T Consensus 747 G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1470)
T PLN03140 747 GTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTR 826 (1470)
T ss_pred HHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccccccccccccc
Confidence 9999999999988889999999999999999999999999988644433322111100000000 0000
Q ss_pred -CC----c-ccc-----ccC----CCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeC
Q 000937 591 -DE----H-VED-----VDM----NAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRP 655 (1218)
Q Consensus 591 -~~----~-~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 655 (1218)
.. . .+. ... .......+..+|..+..++|+||+|.++.+.+.++.. ...+++++|+|||++++|
T Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~-~~~~~~~iL~~vs~~i~~ 905 (1470)
T PLN03140 827 EVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQG-VTEDRLQLLREVTGAFRP 905 (1470)
T ss_pred cccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccc-cCcCCceEeeCcEEEEEC
Confidence 00 0 000 000 0001112334577788999999999998764422110 012346799999999999
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCC
Q 000937 656 GVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQ 735 (1218)
Q Consensus 656 Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~ 735 (1218)
||++||+||||||||||||+|+|+.+++..+|+|.+||.+.....+++.+|||+|+|.+++.+||+|||.|++.++.+..
T Consensus 906 Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~ 985 (1470)
T PLN03140 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE 985 (1470)
T ss_pred CeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999977666789999999886544456779999999999999999999999988876655
Q ss_pred CChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000937 736 INSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815 (1218)
Q Consensus 736 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 815 (1218)
.+.+++.++++++++.++|.++.|+.+|.+++++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++
T Consensus 986 ~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140 986 VSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 55556667899999999999999999998877899999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCCCCCCCCCCCcceeeecccchhh
Q 000937 816 ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSASTEA 895 (1218)
Q Consensus 816 ~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~ 895 (1218)
+++|+|||+++|||+.++++.||++++|.+||+++|+|++++..+++++||++++|.|+||+++|||||++|+++...+.
T Consensus 1066 ~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~ 1145 (1470)
T PLN03140 1066 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV 1145 (1470)
T ss_pred HHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc
Confidence 98899999999999877899999999998679999999998877889999999878778999999999999999876555
Q ss_pred hhhhcHHHHHHhhHHHHHHHHHHHHhhcCCCCCCCCcccccccCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHH
Q 000937 896 ELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASF 975 (1218)
Q Consensus 896 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l 975 (1218)
....||++.|++|+++++..+.++++..+.+...+.....+++.++|+|+++|++|+++++||||.++.+|+++++++|+
T Consensus 1146 ~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al 1225 (1470)
T PLN03140 1146 KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAAL 1225 (1470)
T ss_pred cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHH
Confidence 55568999999999998887777666554444333334567889999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 000937 976 LFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLI 1055 (1218)
Q Consensus 976 ~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~ 1055 (1218)
++|++||+++++..++++++++.|++|++++++++.++++++|.+..||++|+||+++|+|++++|++|++++|+|+.++
T Consensus 1226 ~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~ 1305 (1470)
T PLN03140 1226 MVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLI 1305 (1470)
T ss_pred HHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999998766778999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchH
Q 000937 1056 QAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKW 1135 (1218)
Q Consensus 1056 ~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~ 1135 (1218)
.+++|.+|+|||+||++++.+||+|+++++++.++++++|+++++++|+.++|..+++++++++++|+||++|+++||+|
T Consensus 1306 ~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~ 1385 (1470)
T PLN03140 1306 QTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKW 1385 (1470)
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhCHHHHHHHHHHHHhhCCCccceeeccc--cccHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000937 1136 WIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIE--NKTIASFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGRL 1213 (1218)
Q Consensus 1136 ~~w~~y~sp~~y~~~~l~~~ef~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~ 1213 (1218)
|+|++|+||++|+++|++.|||+|.+.+|.++|. ..++.+|++++|||+++++|++++|+++|+++|+++++++++++
T Consensus 1386 ~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~ 1465 (1470)
T PLN03140 1386 WVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTL 1465 (1470)
T ss_pred HHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998887777652 25789999999999999999999999999999999999999999
Q ss_pred ccccC
Q 000937 1214 NFQQR 1218 (1218)
Q Consensus 1214 ~~~~r 1218 (1218)
|||||
T Consensus 1466 ~~q~r 1470 (1470)
T PLN03140 1466 NFQTR 1470 (1470)
T ss_pred hcccC
Confidence 99998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-166 Score=1638.31 Aligned_cols=1156 Identities=30% Similarity=0.487 Sum_probs=946.9
Q ss_pred CCCCCCCCcchhhccccee-------EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL-------VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~-------~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
+.|++|||||||.+...|. .+|+|++||.++++. ..++.++||+|+|.|+|++||+|||.|+++++.+...
T Consensus 92 IlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 171 (1394)
T TIGR00956 92 VLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNR 171 (1394)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCC
Confidence 6799999999999999985 589999999987643 2355689999999999999999999999998753211
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
. ...+++++. +..++.+++.+||++++||+||+..+|||||||||||+||++++
T Consensus 172 ~---~~~~~~~~~-----------------------~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 172 P---DGVSREEYA-----------------------KHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred C---CCCCHHHHH-----------------------HHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 0 011111111 11246789999999999999999999999999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHh
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~ 234 (1218)
.+| +|++|||||||||+.++.++++.|++++++.|+|+|+++|||+++++++||+|++|++|+++|+|+++++.+||++
T Consensus 226 ~~p-~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~ 304 (1394)
T TIGR00956 226 GGA-KIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEK 304 (1394)
T ss_pred hCC-CEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHH
Confidence 888 7999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC-------cCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhc-------------
Q 000937 235 CGFRCPDRKA-------VISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKS------------- 294 (1218)
Q Consensus 235 lG~~~p~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~------------- 294 (1218)
+||.||+++| +.++.+ .+.+. ..+.....+.+++.+.|++|+.+++..++.+....+.
T Consensus 305 lG~~~p~~~n~aDfl~~~~~~~~-~~~~~-~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1394)
T TIGR00956 305 MGFKCPDRQTTADFLTSLTSPAE-RQIKP-GYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESH 382 (1394)
T ss_pred cCCCCCCCCChHHHHHhccChhh-hhccc-cccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHH
Confidence 9999999998 233322 11111 1111234567889999999987766655543321110
Q ss_pred --ccccCccccccccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHH
Q 000937 295 --ESKKSSVSFAVFSLSRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYT 372 (1218)
Q Consensus 295 --~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~ 372 (1218)
...+.......+..++++|+..|++|+++..+||+..+..++++.+++|+++|++||+.+. +..+.+.+.|++|++
T Consensus 383 ~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~--~~~~~~~r~g~lf~~ 460 (1394)
T TIGR00956 383 VAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK--NTSDFYSRGGALFFA 460 (1394)
T ss_pred HhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC--CchhHHHHHHHHHHH
Confidence 0001111233577899999999999999999999999999999999999999999998764 444678899999999
Q ss_pred HHHHHHhhhcchhhhhhccceeeecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHH
Q 000937 373 LVILIVDGISEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFV 452 (1218)
Q Consensus 373 i~~~~~~~~~~~~~~~~~r~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~ 452 (1218)
+++..+.++.+++.++.+|++|+||+..++|++++|++|++++++|+.++.+++|++|+|||+||++++.+|+. |+++
T Consensus 461 ~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~--f~l~ 538 (1394)
T TIGR00956 461 ILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFF--YLLI 538 (1394)
T ss_pred HHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHH--HHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999998 6666
Q ss_pred HHHHh---hhHHHHHHhcccchhhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhccccccc-------------
Q 000937 453 YFCIE---SSVDHCAETLKIDQFMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKIL------------- 516 (1218)
Q Consensus 453 ~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~------------- 516 (1218)
+++.. +++++++++++++.. .|+.++++.++++++++||+++.++||.|+.|..|.++.
T Consensus 539 ~~l~~~~~~~~~~~i~a~~~~~~-----~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~ 613 (1394)
T TIGR00956 539 LFICTLAMSHLFRSIGAVTKTLS-----EAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFH 613 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhc
Confidence 66554 788999999999999 999999999999999999999999999997666654431
Q ss_pred ----------C-----------C--C----------cccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 000937 517 ----------F-----------T--N----------TTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSF 563 (1218)
Q Consensus 517 ----------~-----------~--~----------~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~ 563 (1218)
+ . | ...|+++|+. ++.++..|+|+++++++++.++|.++.++++++
T Consensus 614 ~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~ 692 (1394)
T TIGR00956 614 GRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEF 692 (1394)
T ss_pred CCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 0 1367788874 444556689999999999999999999999999
Q ss_pred cCCCCCCCcccccCC--cccccccCCC-----CCCCcccc-----ccCCCCC--CCCCcccCCCceEEEEEeEEEEEecC
Q 000937 564 LKPPGSSPAMISHGK--FSGIQRSKGS-----CDDEHVED-----VDMNAHP--NTSQMILPFQPITMVFQDLQYSIDTP 629 (1218)
Q Consensus 564 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ 629 (1218)
.++...........+ .....+.... .+.+.... ...+... .......+.....++|+||+|+++.+
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~ 772 (1394)
T TIGR00956 693 NKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK 772 (1394)
T ss_pred ccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEEecCC
Confidence 885433221111111 0000000000 00000000 0000000 00000001123458999999988532
Q ss_pred chhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCEeCccccccceEEEe
Q 000937 630 LEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGYPKIQETFVRVSGYC 708 (1218)
Q Consensus 630 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v 708 (1218)
++++++|+|||++++|||++||+||||||||||||+|+|+.+++ +.+|+|.+||++... .+++.+|||
T Consensus 773 ----------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv 841 (1394)
T TIGR00956 773 ----------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYV 841 (1394)
T ss_pred ----------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeee
Confidence 13467999999999999999999999999999999999997643 247999999998743 456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000937 709 EQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANP 788 (1218)
Q Consensus 709 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p 788 (1218)
+|+|.+++.+||+||+.|++.++.+...+.+++.++++++++.++|.++.|+.+|.++ .+|||||||||+||++|+.+|
T Consensus 842 ~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia~aL~~~P 920 (1394)
T TIGR00956 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKP 920 (1394)
T ss_pred cccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHHHHHHcCC
Confidence 9999999999999999999988766555556667789999999999999999998654 379999999999999999999
Q ss_pred c-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhh
Q 000937 789 S-IIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFE 867 (1218)
Q Consensus 789 ~-llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~ 867 (1218)
+ ||+|||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|.+||+++++|++++..+++++||+
T Consensus 921 ~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~ 1000 (1394)
T TIGR00956 921 KLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE 1000 (1394)
T ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHH
Confidence 7 999999999999999999999999998889999999999987678899999999876699999999887788999999
Q ss_pred cCCCCCCCCCCCCCCcceeeecccchhhhhhhcHHHHHHhhHHHHHHHHHHHHhhcCCCCCC---CCcccccccCchHHH
Q 000937 868 GIPGVPQIRNNYNPATWMLEVTSASTEAELGLDFSQIYEDSLLYENNKELVRQLSTSGGAAR---DLHFTTRFSQNGWGQ 944 (1218)
Q Consensus 868 ~~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q 944 (1218)
.. |.++||+++|||||++|+++...+.....+|.+.|++|+.+++..+.++....+..... ......+++.++|+|
T Consensus 1001 ~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q 1079 (1394)
T TIGR00956 1001 KH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQ 1079 (1394)
T ss_pred hc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHH
Confidence 87 65579999999999999998654433346899999999887766555444332211111 111224688999999
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhh
Q 000937 945 FKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASER 1024 (1218)
Q Consensus 945 ~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er 1024 (1218)
+++|++|+++++||||.++.+|+++++++|+++|++||++++ +++++++|+|++|+.+++.++. +...+|.++.||
T Consensus 1080 ~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r 1155 (1394)
T TIGR00956 1080 FKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQR 1155 (1394)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHH
Confidence 999999999999999999999999999999999999999975 4678999999999988877765 345667788888
Q ss_pred HHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH-------HHHHHHHHHHHHHHHHHHHH
Q 000937 1025 TVM-YREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYK-------IFWNFYGIFCSMMSFSYLGL 1096 (1218)
Q Consensus 1025 ~v~-~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~-------f~~~~~~~~~~~~~~~~~~~ 1096 (1218)
.+| +||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++.. |++|++++++..++++++|+
T Consensus 1156 ~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~ 1235 (1394)
T TIGR00956 1156 DLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQ 1235 (1394)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 886 8999999999999999999999999999999999999999999988765 99999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchHhHHHHhhCHHHHHHHHHHHHhhCCCccceee----------
Q 000937 1097 LLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMV---------- 1166 (1218)
Q Consensus 1097 ~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~y~sp~~y~~~~l~~~ef~~~~~~~~~---------- 1166 (1218)
++++++|+..+|+.++++++.++++|+||++++++||.||+|++|+||++|+++|++.|||++.+..|..
T Consensus 1236 ~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~ 1315 (1394)
T TIGR00956 1236 MVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPS 1315 (1394)
T ss_pred HHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988755421
Q ss_pred ---------------------cc---cc-----ccHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000937 1167 ---------------------FI---EN-----KTIASFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGRLNFQQ 1217 (1218)
Q Consensus 1167 ---------------------~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~ 1217 (1218)
|+ .| .++.+|+ +.+|++.+++|+|++|+++|++++ +++++++.+..+.+
T Consensus 1316 ~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l-~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1316 GQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL-EPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred CCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHH-HHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 00 01 2455555 578999999999999999999888 88888888875544
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-96 Score=896.86 Aligned_cols=583 Identities=33% Similarity=0.580 Sum_probs=505.1
Q ss_pred CceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEE
Q 000937 613 QPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKV 691 (1218)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~ 691 (1218)
.++.+.|+|++++.+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+...+ ..+|+|++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~---------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilv 92 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK---------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILL 92 (613)
T ss_pred ccceeEEEEEEEEecCCCC---------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEE
Confidence 4578899999998864321 3578999999999999999999999999999999999998764 57999999
Q ss_pred CCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 692 NGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 692 ~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
||++...+.+++.+|||+|+|.++|++||+|+|.|+|.+|++...+.++++++++++++.+||.+++|+++|+.+.+++|
T Consensus 93 NG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiS 172 (613)
T KOG0061|consen 93 NGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLS 172 (613)
T ss_pred CCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccc
Confidence 99887777888999999999999999999999999999999988888999999999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|. .|+++|
T Consensus 173 GGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs-~G~~vy 251 (613)
T KOG0061|consen 173 GGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLS-EGEVVY 251 (613)
T ss_pred cchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhc-CCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 589999
Q ss_pred EcCCCCCchhhhhhhhcCCCCCCCCCCCCCCcceeeecccc-hhhhhhhcHHHHHHhhHHHH--H-HHHHHHHhhcCCCC
Q 000937 852 SGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSAS-TEAELGLDFSQIYEDSLLYE--N-NKELVRQLSTSGGA 927 (1218)
Q Consensus 852 ~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~-~~~~~~~~~~~~~~~s~~~~--~-~~~~~~~~~~~~~~ 927 (1218)
+|++ +++.+||+.. |.| ||++.|||||++|+++.+ ..+.. .+..+.++....++ . ..+...........
T Consensus 252 ~G~~----~~~~~ff~~~-G~~-~P~~~Npadf~l~l~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (613)
T KOG0061|consen 252 SGSP----RELLEFFSSL-GFP-CPELENPADFLLDLLSVDSGTREL-EEAVRIAKLINKFSQTDNLKKTLEALEKSLST 324 (613)
T ss_pred ecCH----HHHHHHHHhC-CCC-CCCcCChHHHHHHHHccCCCchhH-HhHHHHHHHhhhccccchhhhhHHHHhhhccc
Confidence 9998 5789999998 664 999999999999998853 11110 11111111111000 0 00000000000000
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHH
Q 000937 928 ARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIF 1007 (1218)
Q Consensus 928 ~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~ 1007 (1218)
..+ .+.....+||.|++.+++|.+++.+|||.+...|+++.+++|+++|++||++++ +..+++++.|++|+.+.+
T Consensus 325 ~~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~~~ 399 (613)
T KOG0061|consen 325 SKK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFILSF 399 (613)
T ss_pred ccc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHHHH
Confidence 111 111126899999999999999999999999999999999999999999999965 456677999999999999
Q ss_pred HhHhhHhhhHhHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHH
Q 000937 1008 LGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCS 1087 (1218)
Q Consensus 1008 ~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~ 1087 (1218)
+.+..+...++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|++|+|||+|++++..+|++|++++++.
T Consensus 400 ~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~ 479 (613)
T KOG0061|consen 400 MTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLS 479 (613)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 98988888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchHhHHHHhhCHHHHHHHHHHHHhhCCCccceeec
Q 000937 1088 MMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVF 1167 (1218)
Q Consensus 1088 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~y~sp~~y~~~~l~~~ef~~~~~~~~~~ 1167 (1218)
.++++++|++++++.||...|+.+++++++++++|+||+++.++||.||+|++|+|+++|++|+++.|||++....|...
T Consensus 480 ~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~ 559 (613)
T KOG0061|consen 480 SLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLS 559 (613)
T ss_pred HHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999732333211
Q ss_pred --ccc-ccHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000937 1168 --IEN-KTIASFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218 (1218)
Q Consensus 1168 --~~~-~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1218 (1218)
..+ .++.+ ++...+++.++.|.|+.++++++++||+++|++|++-.+.+|
T Consensus 560 ~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 560 GNLCCESTGED-VLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cCCcccccHHH-HHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 112 34444 556799999999999999999999999999999998766554
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-94 Score=894.31 Aligned_cols=584 Identities=27% Similarity=0.455 Sum_probs=481.9
Q ss_pred CceEEEEEeEEEEEecCchhh----------------hhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHH
Q 000937 613 QPITMVFQDLQYSIDTPLEMR----------------RRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVL 676 (1218)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~~~----------------~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l 676 (1218)
.++.++|.|++|+++...... +... ..+++++|+|+|+++++||++||+||||||||||||+|
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iL 114 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETR-QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNAL 114 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccc-cCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHH
Confidence 368899999999986442000 0000 11246799999999999999999999999999999999
Q ss_pred hCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc
Q 000937 677 AGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756 (1218)
Q Consensus 677 ~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 756 (1218)
+|+.+++..+|+|.+||++.... .++.++||+|++.+++.+||+||+.|++.++.+.....+++.++++++++.+||.+
T Consensus 115 aG~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 115 AGRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred hCCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 99877644689999999986432 34568999999999999999999999887765544445556677899999999999
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh
Q 000937 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFES 836 (1218)
Q Consensus 757 ~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~ 836 (1218)
+.|+.+|+...++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~ 273 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQM 273 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh
Confidence 99999988777899999999999999999999999999999999999999999999999888999999999998778999
Q ss_pred hceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCCCCCCCCCCCcceeeecccchhh------h---hhhcHHHHHHh
Q 000937 837 FDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSASTEA------E---LGLDFSQIYED 907 (1218)
Q Consensus 837 ~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~------~---~~~~~~~~~~~ 907 (1218)
+|++++|. +|++++.|++ +++.+||+.+ |. +||.++|||||++|+++.+.+. . ......+.|++
T Consensus 274 ~D~iilL~-~G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (659)
T PLN03211 274 FDSVLVLS-EGRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNT 346 (659)
T ss_pred hceEEEec-CCcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHh
Confidence 99999997 6999999997 5789999998 55 5999999999999998753210 0 00112234432
Q ss_pred hHHHHHHHHHHHH--hhcCCC------CCCCCc-ccccccCchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHH
Q 000937 908 SLLYENNKELVRQ--LSTSGG------AARDLH-FTTRFSQNGWGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFG 978 (1218)
Q Consensus 908 s~~~~~~~~~~~~--~~~~~~------~~~~~~-~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G 978 (1218)
.. .++..+..+. ...... ..+... ....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|
T Consensus 347 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G 424 (659)
T PLN03211 347 LL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAG 424 (659)
T ss_pred hc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHH
Confidence 11 1111111110 000000 000000 11224578999999999999988 8999999999999999999999
Q ss_pred HHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 000937 979 LLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAA 1058 (1218)
Q Consensus 979 ~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~ 1058 (1218)
++||+++ ..++++|.|++||+++++++.+++.+++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.++
T Consensus 425 ~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~ 499 (659)
T PLN03211 425 LMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPT 499 (659)
T ss_pred HHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999984 45789999999999999888888888999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCcchHhHH
Q 000937 1059 LYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIW 1138 (1218)
Q Consensus 1059 ~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w 1138 (1218)
+|++|+|||+||++++.+||+|++++++..++++++|+++++++|+..+|+.+++++++++++|+||+++ +||+||+|
T Consensus 500 if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W 577 (659)
T PLN03211 500 IFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAW 577 (659)
T ss_pred HHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 79999999
Q ss_pred HHhhCHHHHHHHHHHHHhhCCCcc-----ceeecc-ccccHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000937 1139 LYYLSPTSWTLEGLLTSQYGDIDK-----EIMVFI-ENKTIASFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGR 1212 (1218)
Q Consensus 1139 ~~y~sp~~y~~~~l~~~ef~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~ 1212 (1218)
++|+||++|++|+++.|||++.+. +|..+. .......++ ...+++....|.++++|++|+++||+++|++|++
T Consensus 578 ~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~ 656 (659)
T PLN03211 578 IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV-EEDVAGQISPATSVSVLIFMFVGYRLLAYLALRR 656 (659)
T ss_pred HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc-hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999986532 342111 000111122 2234455678999999999999999999999998
Q ss_pred ccc
Q 000937 1213 LNF 1215 (1218)
Q Consensus 1213 ~~~ 1215 (1218)
.+|
T Consensus 657 ~~~ 659 (659)
T PLN03211 657 IKH 659 (659)
T ss_pred ccC
Confidence 876
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-94 Score=895.18 Aligned_cols=567 Identities=31% Similarity=0.502 Sum_probs=495.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCEeCccccccceEEEeccCCCCCCCCC
Q 000937 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHIT 719 (1218)
Q Consensus 641 ~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 719 (1218)
+++++|+|+|++++|||+++|+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4578999999999999999999999999999999999987654 357999999998765556788999999999999999
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPG-VSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
|+||+.|++.++.+.....++++++++++++.+||.++.|+.+|+++ .++|||||||||+||++|+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988877655666777889999999999999999999753 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCCCCCCC
Q 000937 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNN 878 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~ 878 (1218)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|. +|+++|+|++ +++.+||+.+ |. +||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~-g~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL-GH-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHc-CC-CCCCC
Confidence 9999999999999999998899999999999888999999999998 6999999997 5688999998 55 59999
Q ss_pred CCCCcceeeecccchhhh-----hhhcHHHHHHhhHHHHHHHHHHHHhhcCCC---CCCCCcccccccCchHHHHHHHHH
Q 000937 879 YNPATWMLEVTSASTEAE-----LGLDFSQIYEDSLLYENNKELVRQLSTSGG---AARDLHFTTRFSQNGWGQFKSCLW 950 (1218)
Q Consensus 879 ~npad~~l~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~ 950 (1218)
.|||||++|+++.+.+.+ ...++.+.|++|+.+++..+.........+ .........++..+++.|+++|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999987543211 112445566666555444333221111110 011111223567899999999999
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhhHHHHHH
Q 000937 951 KQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYRE 1030 (1218)
Q Consensus 951 R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE 1030 (1218)
|++++.||||.++.+|+++++++|+++|++||+++. ++++++++.|++|++++++++.+++...+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999975 46788999999999999998888888889999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 000937 1031 QSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVAST 1110 (1218)
Q Consensus 1031 ~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 1110 (1218)
+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCcchHhHHHHhhCHHHHHHHHHHHHhhCCCcc-ceeec---ccc-ccHHHHHHhhhCCCc
Q 000937 1111 LFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDK-EIMVF---IEN-KTIASFLEEYFGFHH 1185 (1218)
Q Consensus 1111 ~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~y~sp~~y~~~~l~~~ef~~~~~-~~~~~---~~~-~~~~~~~~~~~~~~~ 1185 (1218)
+++++++++++|+||+++.++||+||+|++|+||++|++|+++.|||.+... +|... +.+ .++ +++++.||++.
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g-~~~l~~~g~~~ 584 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSG-EVILETLSFRN 584 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcCh-HHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999998764 44211 112 344 66778999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000937 1186 DHLAVVAVALIVFPVVLASLFAFFVGRLNFQQR 1218 (1218)
Q Consensus 1186 ~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1218 (1218)
++.|+++++|++++++|++++|++|++-.+.+|
T Consensus 585 ~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 585 ADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999998777666
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-92 Score=931.78 Aligned_cols=592 Identities=23% Similarity=0.368 Sum_probs=505.3
Q ss_pred CceEEEEEeEEEEEecCchh--hh-----------hc-----cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 000937 613 QPITMVFQDLQYSIDTPLEM--RR-----------RE-----CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLD 674 (1218)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~~--~~-----------~~-----~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~ 674 (1218)
+.+.+.|+|+++........ +. .. ...++++++|+|+|+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 46789999999876321110 00 00 01224467999999999999999999999999999999
Q ss_pred HHhCCCCC--CceeeEEEECCEeCcc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCC----CChhhHHHH-H
Q 000937 675 VLAGRKTS--GCFKGEIKVNGYPKIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQ----INSKTKADC-V 745 (1218)
Q Consensus 675 ~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~----~~~~~~~~~-~ 745 (1218)
+|+|+.++ .+.+|+|.+||++... ...++.++|++|+|.+++.+||+||+.|++.++.+.. ...+++.++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998532 1258999999998642 2345679999999999999999999999988775431 223333333 4
Q ss_pred HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEE
Q 000937 746 NHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVC 824 (1218)
Q Consensus 746 ~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~ 824 (1218)
+++++.+||.++.|+.+|+..+++|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999999998888999999999999999999999999999999999999999999999999875 999999
Q ss_pred EecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCCCCCCCCCCCcceeeecccchhh---------
Q 000937 825 TIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNYNPATWMLEVTSASTEA--------- 895 (1218)
Q Consensus 825 ~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npad~~l~~~~~~~~~--------- 895 (1218)
++|||+.++++.||++++|. +|+++++|++ +++.+||+.+ |. +||++.|||||++|+++++.+.
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~-~G~iv~~G~~----~~~~~yF~~l-G~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~ 338 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLY-EGYQIYFGPA----DKAKQYFEKM-GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKV 338 (1394)
T ss_pred EecCCCHHHHHhhceEEEEe-CCeEEEECCH----HHHHHHHHHc-CC-CCCCCCChHHHHHhccChhhhhccccccccC
Confidence 99999878999999999998 5999999997 5789999998 55 6999999999999998764211
Q ss_pred -hhhhcHHHHHHhhHHHHHHHHHHHHhhcCC---------------CCCCCCcccccccCchHHHHHHHHHHHHHHhhcC
Q 000937 896 -ELGLDFSQIYEDSLLYENNKELVRQLSTSG---------------GAARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRT 959 (1218)
Q Consensus 896 -~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~ 959 (1218)
....++++.|++|+.+++..+.++...... ...+.....+.+..|+|+|+++|++|++++.|||
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 123578899999988776654443321110 0001112234578899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhhHHHHHHhcCCCCChH
Q 000937 960 PSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVMYREQSAGMYSPL 1039 (1218)
Q Consensus 960 ~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~ 1039 (1218)
|.++.+|+++++++|+++|++||+++. +++++++|.|++||++++.++.++.++ +.+..||+||+||+.+++|+++
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHH
Confidence 999999999999999999999999975 457899999999999999999887665 4556799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 000937 1040 AYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTY 1119 (1218)
Q Consensus 1040 ~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1119 (1218)
+|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++++++++++|+..+|+.+++++++++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCcchHhHHHHhhCHHHHHHHHHHHHhhCCCccceee------------------------cccc-ccHH
Q 000937 1120 SLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMV------------------------FIEN-KTIA 1174 (1218)
Q Consensus 1120 ~lf~G~~i~~~~ip~~~~w~~y~sp~~y~~~~l~~~ef~~~~~~~~~------------------------~~~~-~~~~ 1174 (1218)
++|+||++|.++||+||+|++|+||++|+|||++.|||++...+|.. +|++ +++.
T Consensus 575 ~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~ 654 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGD 654 (1394)
T ss_pred HHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHH
Confidence 99999999999999999999999999999999999999987776631 1112 4677
Q ss_pred HHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000937 1175 SFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGRLNF 1215 (1218)
Q Consensus 1175 ~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1215 (1218)
+|+...||++.+|+|+|++||++|+++|+++++++++|+++
T Consensus 655 ~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 655 DYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887899999999999999999999999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-91 Score=917.00 Aligned_cols=594 Identities=25% Similarity=0.389 Sum_probs=498.0
Q ss_pred CceEEEEEeEEEEEecCchhh----------h----hc------cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHH
Q 000937 613 QPITMVFQDLQYSIDTPLEMR----------R----RE------CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTL 672 (1218)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~~~----------~----~~------~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTL 672 (1218)
..+.+.|+||++........+ + .. ..++.++++|+|+|+.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 457899999999765211100 0 00 012345779999999999999999999999999999
Q ss_pred HHHHhCCCCCC-ceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCC-------CChhhH---
Q 000937 673 LDVLAGRKTSG-CFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQ-------INSKTK--- 741 (1218)
Q Consensus 673 l~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~--- 741 (1218)
||+|+|+.++. ..+|+|.+||++..+...++.++||+|+|.+++++||+|||.|++.++.+.. ...+++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 99999987653 3589999999986543346779999999999999999999999987653211 111111
Q ss_pred ---------------------HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000937 742 ---------------------ADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800 (1218)
Q Consensus 742 ---------------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgL 800 (1218)
+..++++++.+||.++.|+.+|+..+++|||||||||+||++|+.+|++++|||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 12357799999999999999999888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCCCCCCCC
Q 000937 801 DARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVPQIRNNY 879 (1218)
Q Consensus 801 D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~ 879 (1218)
|+.++.++++.|+++++ .|+|||+++|||+.++++.||++++|. +|+++|+||+ +++.+||+++ |+ +||++.
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~-~G~ivy~G~~----~~~~~yF~~l-Gf-~cP~~~ 440 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS-EGQIVYQGPR----DHILEFFESC-GF-KCPERK 440 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee-CceEEEeCCH----HHHHHHHHHc-CC-CCCCCC
Confidence 99999999999999987 499999999999889999999999998 5999999997 5789999999 55 599999
Q ss_pred CCCcceeeecccchhh------------hhhhcHHHHHHhhHHHHHHHHHHHHhhcCCCCCCCCcccccccCchHHHHHH
Q 000937 880 NPATWMLEVTSASTEA------------ELGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNGWGQFKS 947 (1218)
Q Consensus 880 npad~~l~~~~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 947 (1218)
|||||++|+++..... ....++++.|++|+.+++..+.++.-.......+.....++|..+++.|++.
T Consensus 441 n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~ 520 (1470)
T PLN03140 441 GTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKA 520 (1470)
T ss_pred ChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHH
Confidence 9999999999864321 1134678889988877665443322100000111111234588899999999
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHHHhhHHH
Q 000937 948 CLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTVM 1027 (1218)
Q Consensus 948 l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~ 1027 (1218)
|++|+++..+||+.++..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++.++.++.+ ++.++.||+||
T Consensus 521 ~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf 599 (1470)
T PLN03140 521 CWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLPVF 599 (1470)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccchh
Confidence 99999999999999999999999999999999999997654444556778899999998888776544 57778899999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Q 000937 1028 YREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVALSPNVTV 1107 (1218)
Q Consensus 1028 ~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1218)
+|||..++|++++|++|++++++|+.++.+++|.+|+|||+||++++++||+|+++++++.++++++++++++++|+..+
T Consensus 600 ~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~ 679 (1470)
T PLN03140 600 YKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMII 679 (1470)
T ss_pred HHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCcchHhHHHHhhCHHHHHHHHHHHHhhCCCccc-eeecccc-ccHHHHHHhhhCCCc
Q 000937 1108 ASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKE-IMVFIEN-KTIASFLEEYFGFHH 1185 (1218)
Q Consensus 1108 a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~y~sp~~y~~~~l~~~ef~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~ 1185 (1218)
|+.+++++++++++|+||++|+++||+||+|++|+||++|++||+++|||.+.... +.+.+.+ .++.+++ +.+|++.
T Consensus 680 A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~~~ 758 (1470)
T PLN03140 680 ANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDVFT 758 (1470)
T ss_pred HHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCcCc
Confidence 99999999999999999999999999999999999999999999999999775432 2222222 4455555 8899975
Q ss_pred c--hhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000937 1186 D--HLAVVAVALIVFPVVLASLFAFFVGRLNF 1215 (1218)
Q Consensus 1186 ~--~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1215 (1218)
+ +.|+++++|++|+++|+++++++|++++.
T Consensus 759 ~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 759 DKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4 56999999999999999999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-85 Score=800.58 Aligned_cols=566 Identities=27% Similarity=0.454 Sum_probs=501.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCEeCccccccceEEEeccCCCCCCCCC
Q 000937 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHIT 719 (1218)
Q Consensus 641 ~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 719 (1218)
.+.++|+|+|+.++|||++.++||+||||||||++|+|..+.. ...|+|.+||.+......++.++|++|+|.|+|.||
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999965432 236899999998765444788999999999999999
Q ss_pred HHHHHHHHHhhccCCCC----ChhhHH-HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000937 720 IEESLFFSAWLRLAPQI----NSKTKA-DCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMD 794 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~----~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllD 794 (1218)
|+|+|.|+++++.+... .+.++. +..+.+++.+||++++|+++|+..+|++||||||||++|.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 99999999999877432 222222 2577899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCCchhhhhhhhcCCCCC
Q 000937 795 EPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNHSSRVIEYFEGIPGVP 873 (1218)
Q Consensus 795 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~~~~~~~~f~~~~~~~ 873 (1218)
|+|+|||+.++.++++.||++++. +.|++++.|||+.+++++||++++|. +|+++|+||. +++.+||+.+ |.
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~-eG~~iy~Gp~----d~~~~yFe~~-Gf- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLS-EGYQIYQGPR----DEVLPYFEDM-GF- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeee-ccceEEeccH----HHHHHHHHhc-Cc-
Confidence 999999999999999999999875 89999999999999999999999998 5999999998 5789999998 55
Q ss_pred CCCCCCCCCcceeeecccchhhh------------hhhcHHHHHHhhHHHHHHHHHHHHhhcCCCCCCCCcccccccCch
Q 000937 874 QIRNNYNPATWMLEVTSASTEAE------------LGLDFSQIYEDSLLYENNKELVRQLSTSGGAARDLHFTTRFSQNG 941 (1218)
Q Consensus 874 ~~~~~~npad~~l~~~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1218)
.||++.++|||+.++++..++.+ ...++++.|.+|+.+++....++.........+.....++|..|.
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 69999999999999998432211 115788999999988877655443222222223334456789999
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHhHHHHHHHHHhHhhHhhhHhHHH
Q 000937 942 WGQFKSCLWKQHLSYWRTPSYNLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAA 1021 (1218)
Q Consensus 942 ~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 1021 (1218)
|.|++.|++|.++.+.||..++..++++.+++|+++|++|++.+. ++..+.+.|.|++||++++..+.++.++ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999973 5567789999999999999998887775 4456
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000937 1022 SERTVMYREQSAGMYSPLAYAFAQVTIEIPYLLIQAALYVIITYPMIGFYASAYKIFWNFYGIFCSMMSFSYLGLLLVAL 1101 (1218)
Q Consensus 1022 ~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1101 (1218)
+.||||+|||...+|+++||.++.+++++|+.++.+++|.+|+||++||.+++++||.+++++++...|+++++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCcchHhHHHHhhCHHHHHHHHHHHHhhCCCccceee---------------
Q 000937 1102 SPNVTVASTLFSAFYTTYSLFAGFVIPQPQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMV--------------- 1166 (1218)
Q Consensus 1102 ~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~y~sp~~y~~~~l~~~ef~~~~~~~~~--------------- 1166 (1218)
+++...|++++++.++.+.+++||+||.++||+||+|++|+||+.|++|+++.|||++++.+|..
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998877751
Q ss_pred ------cccc-ccHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000937 1167 ------FIEN-KTIASFLEEYFGFHHDHLAVVAVALIVFPVVLASLFAFFVGRLNFQ 1216 (1218)
Q Consensus 1167 ------~~~~-~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1216 (1218)
+|+. +.+.+|+...|+|++.|.|+++||++||.++|.++..+++.|++..
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1111 4567788888999999999999999999999999999999999863
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-76 Score=729.39 Aligned_cols=753 Identities=20% Similarity=0.249 Sum_probs=434.1
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCccc---cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVP---QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~~---~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++||||||+.....+ ..+|+|++||.|+++.+. |..+|.|.|||++|.+ ||+||+.|.-
T Consensus 384 lVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~----------- 451 (1228)
T KOG0055|consen 384 LVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGK----------- 451 (1228)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCC-----------
Confidence 679999999999998887 578999999999998875 4567899999999975 9999999941
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
+. ..++|+++++|++|+|+|+.+++..+ ||.||+.+.. |||||||||+|||+++.+|
T Consensus 452 -------~d----at~~~i~~a~k~ana~~fi~~lp~g~-----------~T~vge~g~q-LSGGQKQRIAIARalv~~P 508 (1228)
T KOG0055|consen 452 -------PD----ATREEIEEAAKAANAHDFILKLPDGY-----------DTLVGERGVQ-LSGGQKQRIAIARALVRNP 508 (1228)
T ss_pred -------Cc----ccHHHHHHHHHHccHHHHHHhhHHhh-----------cccccCCCCC-CChHHHHHHHHHHHHHhCC
Confidence 11 12357899999999999999988776 9999985433 9999999999999999998
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCCC
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCGF 237 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG~ 237 (1218)
+||+|||||||||+.++..|+++|++.+ ++++|+|++ ||.++++.+|+|++|.+|++|+.|+|+|++.. -|.
T Consensus 509 -~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVa---HRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~---~G~ 580 (1228)
T KOG0055|consen 509 -KILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVA---HRLSTIRNADKIAVMEEGKIVEQGTHDELIAL---GGI 580 (1228)
T ss_pred -CEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEe---eehhhhhccCEEEEEECCEEEEecCHHHHHhc---cch
Confidence 8999999999999999999999999876 456677777 77889999999999999999999999999962 021
Q ss_pred CCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHH-HHhhhhcccccCccccccccccHHHHHHH
Q 000937 238 RCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDL-SQVYYKSESKKSSVSFAVFSLSRWELFKA 316 (1218)
Q Consensus 238 ~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 316 (1218)
..+....++..+. .+ +.+......+......+.+.......... .......+.+ .+..... . .......
T Consensus 581 ----Y~~lv~~Q~~~~~-~~-~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~-~e~~~~~--~-~~~~~~~ 650 (1228)
T KOG0055|consen 581 ----YSSLVRLQELEKA-AE-DEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPE-GEDPEEP--V-SEEDEKV 650 (1228)
T ss_pred ----HHHHHHHHhhhhh-hh-ccccccchhhhhhhccccccccccccCCcccccccccccc-ccccccc--c-ccccccc
Confidence 0000000000000 00 00000000000000000000000000000 0000000000 0000000 0 0000222
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccC--------CCccchhhh-hhhHHHHHHHHHH----------H
Q 000937 317 CMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTG--------MEVDVFHAN-YFMGSLFYTLVIL----------I 377 (1218)
Q Consensus 317 l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~--------~~~~~~~~~-~~~g~~f~~i~~~----------~ 377 (1218)
-++|.++..+.+|.++++..+.+++.|...+.+-+... .+.+..... ....++|..+... +
T Consensus 651 s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~ 730 (1228)
T KOG0055|consen 651 SFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYF 730 (1228)
T ss_pred cHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888999988888877776666544322110 111111111 1122222222111 1
Q ss_pred Hhhhcchhhhhhccc-----------eeeecccCCCcchHHHHHHH------HHHHhhHHHHHHhHhhheeeccccccch
Q 000937 378 VDGISEIPMSLERLA-----------VFYKQKEMCLYPAWAYVIPA------TILKVPLSLVESLVWTSLTYYVIGFSPE 440 (1218)
Q Consensus 378 ~~~~~~~~~~~~~r~-----------v~~re~~~~~y~~~~y~la~------~l~~~p~~~~~~~i~~~i~Y~~~gl~~~ 440 (1218)
|.-+++-.....|.. -|..++.. ...+.-+++ .+++-++..+...+.++++-..++|..+
T Consensus 731 f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns---g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~ 807 (1228)
T KOG0055|consen 731 FGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS---GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYG 807 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc---hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111001111 12222222 333332222 2333344444444444444434333322
Q ss_pred HhhHHH--HHHHHHHHHHhhhHHHHHHhcccchhhhhh---HhhhhhhhHHHHHHhhhcc-ceecCCc---chhh---hh
Q 000937 441 LWRWVS--FEKAFVYFCIESSVDHCAETLKIDQFMCFQ---LEVLQYGSSYYLVASLSHN-VRLSSNN---MIVY---FK 508 (1218)
Q Consensus 441 ~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~l~~G-~~i~~~~---~~~~---~~ 508 (1218)
+ +... .....++.........+......+...... .+|.-.....-.+..+... .++.... -.++ +.
T Consensus 808 W-~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~ 886 (1228)
T KOG0055|consen 808 W-RLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFK 886 (1228)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1100 000111111111111111111111110000 0010000001111111100 0000000 0000 00
Q ss_pred hcccccccC-----------C-CcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccc
Q 000937 509 LIHWKKILF-----------T-NTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISH 576 (1218)
Q Consensus 509 ~~~~~~~~~-----------~-~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~~~~~~~~~~~~~~ 576 (1218)
...|.+... . +..+|..++....++..+.+.......+.++.+..... -.|+..++..+.
T Consensus 887 ~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s--------~~Pd~~ka~~Aa 958 (1228)
T KOG0055|consen 887 RGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASS--------YAPDISKAKIAA 958 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHh--------hCcHHHHHHHHH
Confidence 000100000 0 11245555555444443322222111112222222211 125555555555
Q ss_pred CCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCC
Q 000937 577 GKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPG 656 (1218)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G 656 (1218)
..++...++++..+... ..+...+...-.++++|++|.||.+ ...+||+|+|+++++|
T Consensus 959 ~~iF~i~dr~~~i~~~~-----------~~~~~~~~~~G~I~~~~V~F~YPsR-----------P~~~Il~~l~l~i~~G 1016 (1228)
T KOG0055|consen 959 GSIFEILDRKPTIDPDS-----------TSGGKLPNVKGDIEFRNVSFAYPTR-----------PDVPVLNNLSLSIRAG 1016 (1228)
T ss_pred HHHHHHhcCCCCCCCCC-----------CCCCccccceeEEEEeeeEeeCCCC-----------CCchhhcCCcEEecCC
Confidence 55555555443222210 1111122234579999999999864 3468999999999999
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA 733 (1218)
Q Consensus 657 e~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~ 733 (1218)
+.+||+|||||||||.+.+|-..++| .+|.|.+||.++.+ ...|+++|.|.|+|.+|. -|++||+.|+. .
T Consensus 1017 qTvALVG~SGsGKSTvI~LLeRfYdp--~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-~--- 1089 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFYDP--DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-E--- 1089 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-C---
Confidence 99999999999999999999998887 48999999998654 346788999999999985 69999999971 1
Q ss_pred CCCChhhHHHHH---HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 000937 734 PQINSKTKADCV---NHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810 (1218)
Q Consensus 734 ~~~~~~~~~~~~---~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~ 810 (1218)
..+.++..+.. +.---..+|.+-.||.+|..+. +||||||||++||||+++||+||||||.||+||+++.+.+.+
T Consensus 1090 -~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQe 1167 (1228)
T KOG0055|consen 1090 -EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQE 1167 (1228)
T ss_pred -CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHH
Confidence 12222222211 1111134788889999998875 799999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 811 AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 811 ~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
.|.+.. .|+|.|++.|+++ ..+.+|.++|++ +|++++.|+-+
T Consensus 1168 ALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~-~G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1168 ALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLK-NGKVVEQGTHD 1209 (1228)
T ss_pred HHHHhh-cCCcEEEEecchh--hhhcCCEEEEEE-CCEEEecccHH
Confidence 999964 5899999999985 488999999998 69999999864
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-73 Score=698.71 Aligned_cols=512 Identities=27% Similarity=0.437 Sum_probs=409.5
Q ss_pred CCCCCCCCcchhhcccce------eEEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG------LVTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g------~~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|.+|||||||.....| .++|+|++||++.....+++.+|||+|||.++|+|||||||.|+|++|.+.
T Consensus 61 imG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~----- 135 (613)
T KOG0061|consen 61 IMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPS----- 135 (613)
T ss_pred EECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCC-----
Confidence 579999999998766655 478999999988887788999999999999999999999999999998543
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
++++++++ .+||+++++|||.+|+||+||+...||||||||||||||+|++.+|
T Consensus 136 --~~~~~~k~------------------------~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P 189 (613)
T KOG0061|consen 136 --SLSKEEKR------------------------ERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDP 189 (613)
T ss_pred --CCCHHHHH------------------------HHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCC
Confidence 33444443 3589999999999999999999988999999999999999999998
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCCC
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCGF 237 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG~ 237 (1218)
+||+||||||||||.+|.++++.||++|++ |+|||+||||||+++|++||++++|++|+++|+|+++++.+||++.|+
T Consensus 190 -~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~ 267 (613)
T KOG0061|consen 190 -SILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGF 267 (613)
T ss_pred -CEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCC
Confidence 699999999999999999999999999986 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCChhhhhhhhhcCCC-CCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCcccccc-ccccHHHHHH
Q 000937 238 RCPDRKAVISRKDQAQYWFHNEL-PHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAV-FSLSRWELFK 315 (1218)
Q Consensus 238 ~~p~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~q~~ 315 (1218)
+||++.|...---......+... ...........+.++......+........... ....+. ...++|.|+.
T Consensus 268 ~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~q~~ 341 (613)
T KOG0061|consen 268 PCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLST------SKKVEIGTSPSWWTQFK 341 (613)
T ss_pred CCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhccc------ccccccccCCcHHHHHH
Confidence 99999982110000000000000 000000001111111000000000000000000 000111 1678999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhc-chhhhhhcccee
Q 000937 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGIS-EIPMSLERLAVF 394 (1218)
Q Consensus 316 ~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~-~~~~~~~~r~v~ 394 (1218)
.+++|.++..+|++.++..+.++.+++|+++|.+|++.+.+ .....++.+++|+.+.+..+..+. .++.+..+|++|
T Consensus 342 ~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~--~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f 419 (613)
T KOG0061|consen 342 ILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND--AKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIF 419 (613)
T ss_pred HHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999987543 334458889999999888666655 688899999999
Q ss_pred eecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHh---hhHHHHHHhcccch
Q 000937 395 YKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIE---SSVDHCAETLKIDQ 471 (1218)
Q Consensus 395 ~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 471 (1218)
.||+..++|+.++|++|+.++++|+.++.+++|++|+|||+|++++..+|+. +.++.++.. .+++.++++..++.
T Consensus 420 ~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~--~~l~~~~~~~~a~s~~~~i~~~~~~~ 497 (613)
T KOG0061|consen 420 LRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLY--FLLIILLSSLVAESLGLFISAIVPNL 497 (613)
T ss_pred HHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHH--HHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999999999999999999988 555555433 78899999999998
Q ss_pred hhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccc-----------------cC------C-CcccHHHhh
Q 000937 472 FMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKI-----------------LF------T-NTTIGREIL 527 (1218)
Q Consensus 472 ~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~-----------------~~------~-~~~~G~~~l 527 (1218)
. .|..+++.....+++++||+++.+.+|+|+.|..|-.. .. . +...|.+++
T Consensus 498 ~-----~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l 572 (613)
T KOG0061|consen 498 S-----LATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVL 572 (613)
T ss_pred h-----heeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHH
Confidence 8 99999999999999999999999999998544332211 00 1 234678888
Q ss_pred hccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhccC
Q 000937 528 KSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFLK 565 (1218)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~~~ 565 (1218)
+..++...+ +|.++.+++++.++|++++++++++..
T Consensus 573 ~~~~~~~~~--~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 573 KQLGFEDSS--FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred HhcCCcccc--cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888876554 789999999999999999999998754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-68 Score=660.32 Aligned_cols=517 Identities=26% Similarity=0.389 Sum_probs=417.2
Q ss_pred CCCCCCCCcchhhccccee------EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL------VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~------~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.+.+....++.++||+|+|.|++++||+|||.|+++++.+.
T Consensus 56 I~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~----- 130 (617)
T TIGR00955 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPR----- 130 (617)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCC-----
Confidence 6799999999999888874 37999999999876566778999999999999999999999999987532
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCc-CCcCCccccchhhHHHHHhhC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAI-RRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~-~rGLSGGeKrRvSIA~ell~~ 156 (1218)
..+++++ ...++++++.|||.+++||.||++. .|||||||||||+||+|++.+
T Consensus 131 --~~~~~~~------------------------~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~ 184 (617)
T TIGR00955 131 --RVTKKEK------------------------RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184 (617)
T ss_pred --CCCHHHH------------------------HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcC
Confidence 1122222 1246889999999999999999864 689999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCG 236 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG 236 (1218)
| +||+|||||||||+.++.++++.|+++++ .|+|+|+++|||+.+++++||++++|++|+++|+||++++.+||+++|
T Consensus 185 p-~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g 262 (617)
T TIGR00955 185 P-PLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLG 262 (617)
T ss_pred C-CEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcC
Confidence 8 79999999999999999999999999986 589999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhccc---ccCccccccccccHHHH
Q 000937 237 FRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSES---KKSSVSFAVFSLSRWEL 313 (1218)
Q Consensus 237 ~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~q 313 (1218)
++||++.|..+--..................+++.+.|++++..++..++.......+.. .........+..+++.|
T Consensus 263 ~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 342 (617)
T TIGR00955 263 HPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQ 342 (617)
T ss_pred CCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHH
Confidence 999999872211000000000000001122345556666655444433322211111000 00001123456789999
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhh-cchhhhhhccc
Q 000937 314 FKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGI-SEIPMSLERLA 392 (1218)
Q Consensus 314 ~~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~-~~~~~~~~~r~ 392 (1218)
+..+++|.++..+||+..+..++++.+++|+++|++|++.+.+ ..+.+.+.|++|++++.+.+..+ ..++.+..+|+
T Consensus 343 ~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~--~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~ 420 (617)
T TIGR00955 343 FYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT--QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELP 420 (617)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999976643 44667788999999888777764 45666778999
Q ss_pred eeeecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHh---hhHHHHHHhccc
Q 000937 393 VFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIE---SSVDHCAETLKI 469 (1218)
Q Consensus 393 v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~---~~~~~~~~~~~~ 469 (1218)
+|+||+..++|++++|+++++++++|+.++.+++|.+|+|||+|+++++.+|+. +++++++.. .+++.+++++++
T Consensus 421 v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~--f~l~~~l~~~~~~s~~~~i~~~~~ 498 (617)
T TIGR00955 421 VFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLT--FLFLVTLVANVATSFGYLISCAFS 498 (617)
T ss_pred HHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999987 555554443 788999999999
Q ss_pred chhhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhccccccc----------------C-C---------CcccH
Q 000937 470 DQFMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKIL----------------F-T---------NTTIG 523 (1218)
Q Consensus 470 ~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~----------------~-~---------~~~~G 523 (1218)
+.. .|..+++...+++++++||+++.+++|.|+.|..|..+. . . +...|
T Consensus 499 ~~~-----~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g 573 (617)
T TIGR00955 499 STS-----MALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSG 573 (617)
T ss_pred chH-----HHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcCh
Confidence 999 999999999999999999999999999987776665531 0 0 11248
Q ss_pred HHhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 000937 524 REILKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFL 564 (1218)
Q Consensus 524 ~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~~ 564 (1218)
+++++.+|++.++ +|.++++++++.++|+++++++|++.
T Consensus 574 ~~~l~~~g~~~~~--~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 574 EVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred HHHHHhcCCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999987654 69999999999999999999999864
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=635.01 Aligned_cols=508 Identities=20% Similarity=0.316 Sum_probs=394.6
Q ss_pred CCCCCCCCcchhhccccee-----EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL-----VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~-----~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|++||.+..+. .++.++||+|+|.+++.+||+|||.|++.++.+.
T Consensus 99 I~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~------ 171 (659)
T PLN03211 99 VLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPK------ 171 (659)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCC------
Confidence 6799999999999999985 389999999987643 2345899999999999999999999998776321
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
..+++++ ...++++++.+||++++||+||+...++|||||||||+||++++.+|
T Consensus 172 -~~~~~~~------------------------~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P- 225 (659)
T PLN03211 172 -SLTKQEK------------------------ILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP- 225 (659)
T ss_pred -CCCHHHH------------------------HHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCC-
Confidence 1111111 12357889999999999999999888999999999999999999988
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCCCC
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCGFR 238 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG~~ 238 (1218)
+||+|||||||||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++|+++|+|+++++.+||+++|++
T Consensus 226 ~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~ 304 (659)
T PLN03211 226 SLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFS 304 (659)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCC
Confidence 79999999999999999999999999986 58999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-------cCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHh--hh-hcc------cccCccc
Q 000937 239 CPDRKA-------VISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQV--YY-KSE------SKKSSVS 302 (1218)
Q Consensus 239 ~p~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~-~~~------~~~~~~~ 302 (1218)
||++.| +.+.....+ ...........+.+.+.|++.. .++.....+.. .. ..+ .......
T Consensus 305 ~P~~~NpADf~ldv~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (659)
T PLN03211 305 PSFPMNPADFLLDLANGVCQTD---GVSEREKPNVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSS 380 (659)
T ss_pred CCCCCCHHHHHHHHcCccccCC---CccccccchHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccC
Confidence 999988 122111000 0000000111233444454221 11111111100 00 000 0000001
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHH-hhh
Q 000937 303 FAVFSLSRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIV-DGI 381 (1218)
Q Consensus 303 ~~~~~~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~-~~~ 381 (1218)
...+..++|+|+.+|++|.++. +|++.....++++.+++|+++|++||+.+ ..+.+++.|++||++.+..+ ..+
T Consensus 381 ~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~----~~~~~~r~g~lff~~~~~~~~~~~ 455 (659)
T PLN03211 381 DRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD----FRDVQDRLGLLFFISIFWGVFPSF 455 (659)
T ss_pred CCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124468999999999999988 78888888999999999999999999763 23567889999999877554 556
Q ss_pred cchhhhhhccceeeecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHh---h
Q 000937 382 SEIPMSLERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIE---S 458 (1218)
Q Consensus 382 ~~~~~~~~~r~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~---~ 458 (1218)
..++.+..+|++|+||+.+++|++++|++|++++++|+.++.+++|++|+|||+||++++.+|+. |++++++.. +
T Consensus 456 ~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~--f~li~~l~~~~~~ 533 (659)
T PLN03211 456 NSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLL--TLLVLLGYVLVSQ 533 (659)
T ss_pred HHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHH--HHHHHHHHHHHHH
Confidence 77888889999999999999999999999999999999999999999999999999999999988 666665544 8
Q ss_pred hHHHHHHhcccchhhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhccccccc-----------CCC--------
Q 000937 459 SVDHCAETLKIDQFMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKIL-----------FTN-------- 519 (1218)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~-----------~~~-------- 519 (1218)
+++.++++++++.. .|+.+++..++++++|+||+++ ++|.|+.|..|..+. .+.
T Consensus 534 s~g~~i~a~~~~~~-----~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~ 606 (659)
T PLN03211 534 GLGLALGAAIMDAK-----KASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLL 606 (659)
T ss_pred HHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCcccccccc
Confidence 89999999999999 9999999999999999999996 799998777665532 000
Q ss_pred cccH--------HHhhhccCcccCCcchhHHHHHHHHHHHHHHHHHHHHHhccC
Q 000937 520 TTIG--------REILKSRGLNFDEYFFWISLGALFGLALVFNFAFALALSFLK 565 (1218)
Q Consensus 520 ~~~G--------~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~~~~~l~~~~ 565 (1218)
.|.+ ..++....+. ....|.++++++++.++|+++++++|++.+
T Consensus 607 ~C~~~~~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 607 GCSLPHGSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred CCCCcccCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111 0112212222 234788999999999999999999998654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-62 Score=641.07 Aligned_cols=217 Identities=25% Similarity=0.431 Sum_probs=189.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. +++.+|+|+|+.|++||++||+||||||||||+|+|+|..+|. +|+|.++|++
T Consensus 1937 ~L~v~nLsK~Y~~------------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt--sG~I~i~G~~ 2002 (2272)
T TIGR01257 1937 ILRLNELTKVYSG------------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT--SGDATVAGKS 2002 (2272)
T ss_pred eEEEEEEEEEECC------------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC--ccEEEECCEE
Confidence 4889999988841 1257999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 696 KIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
+.. ...++.+||++|++.+++.+||+|++.+.+.++. ...++.++.++++++.++|.+..|+.++ +||||
T Consensus 2003 i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGG 2074 (2272)
T TIGR01257 2003 ILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGG 2074 (2272)
T ss_pred CcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHH
Confidence 642 2345679999999999999999999998776542 2233445678889999999988887754 79999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||||+||+||+.+|++++|||||+|||+.+++.+++.|++++++|+|||++||+++ ++...||++++|. +|+++..|
T Consensus 2075 qKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~-~G~i~~~G 2152 (2272)
T TIGR01257 2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMV-KGAFQCLG 2152 (2272)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEC
Confidence 999999999999999999999999999999999999999999888999999999985 6778899999998 59999999
Q ss_pred CCC
Q 000937 854 PLG 856 (1218)
Q Consensus 854 ~~~ 856 (1218)
++.
T Consensus 2153 s~q 2155 (2272)
T TIGR01257 2153 TIQ 2155 (2272)
T ss_pred CHH
Confidence 873
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-62 Score=645.16 Aligned_cols=217 Identities=20% Similarity=0.331 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC------------
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG------------ 683 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~------------ 683 (1218)
.++|+||+|+|+.. +++++|+|+|++|+||+.+||+||||||||||+++|.|+++|.
T Consensus 1165 ~I~f~nVsF~Y~~~-----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR-----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred eEEEEEEEEECCCC-----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 58999999999631 1246999999999999999999999999999999999988761
Q ss_pred ----------------------------------------ceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCCCH
Q 000937 684 ----------------------------------------CFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITI 720 (1218)
Q Consensus 684 ----------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv 720 (1218)
+.+|+|++||.++.. ..+++.++||+|++.+| +.|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccH
Confidence 148999999998643 45678899999999887 4899
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000937 721 EESLFFSAWLRLAPQINSKTKADCVNHVLKTIE-------LDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFM 793 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llll 793 (1218)
+|||.++. ++.+. +.++++++..+ |.+-.|+.+|..+ ..||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~-----~~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK-----EDATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99998852 12222 23444444443 4456788998665 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCCHHHHHhhceEEEEecC---CEE-EEEcCCC
Q 000937 794 DEPTTGLDARAAAIVMRAVKNVA-DTGRTIVCTIHQPSIDIFESFDELILLKTG---GRI-IYSGPLG 856 (1218)
Q Consensus 794 DEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~---G~~-~~~g~~~ 856 (1218)
|||||+||+.+++.|.+.|+++. .+++|+|+++|++ +..+.+|++++|.++ |++ ++.|+.+
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~ 1448 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHE 1448 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHH
Confidence 99999999999999999999986 3689999999987 457889999999852 775 4789864
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=528.66 Aligned_cols=450 Identities=24% Similarity=0.310 Sum_probs=340.4
Q ss_pred CCCCCCCCcchhhccccee-------EEEEEEECCcccCCcccc-------ceEEeecccc--ccCCCCCHHHHHHHHhh
Q 000937 4 LNDRIGFGLSVISWFCTGL-------VTGEVSYNGYKLEEFVPQ-------KLSAYVSQYD--LHIPEMTVRETLDFSTY 67 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~-------~~G~V~~nG~~~~~~~~~-------~~~~yV~Q~D--~l~~~LTVrEtL~Faa~ 67 (1218)
+.|.+||||||++....|. .+|+|.+||.++.....+ +.++||+|++ .+-|..||.+.+.=+.+
T Consensus 40 IvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~ 119 (539)
T COG1123 40 IVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALR 119 (539)
T ss_pred EEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHH
Confidence 5689999999999988872 479999999977655421 4678999996 66788999999988777
Q ss_pred ccCCCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchh
Q 000937 68 CQGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRL 147 (1218)
Q Consensus 68 lk~~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRv 147 (1218)
.+... ++++.+ ....++++..||++-... +.+.+.|||||||||
T Consensus 120 ~h~~~---------~~~ea~------------------------~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv 163 (539)
T COG1123 120 LHGKG---------SRAEAR------------------------KRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRV 163 (539)
T ss_pred Hhccc---------cHHHHH------------------------HHHHHHHHHcCCCChhhh---ccCCcccCchHHHHH
Confidence 65422 112211 124677999999997776 667899999999999
Q ss_pred hHHHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhh
Q 000937 148 TTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRES 227 (1218)
Q Consensus 148 SIA~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~ 227 (1218)
.||+++.++| ++|++||||++||..+..+|++.||++.++.|+++|++-|-+ .-+-+++|+|+||.+|++|+.|++++
T Consensus 164 ~iAmALa~~P-~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~~~~ 241 (539)
T COG1123 164 MIAMALALKP-KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGPTEE 241 (539)
T ss_pred HHHHHHhCCC-CEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecCHHH
Confidence 9999999998 899999999999999999999999999999999988875532 34467799999999999999999998
Q ss_pred HHHHHHhCCCCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCcccccccc
Q 000937 228 VLEFFESCGFRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFS 307 (1218)
Q Consensus 228 l~~yF~~lG~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (1218)
+.+- |.| + |.+ .....
T Consensus 242 i~~~--------p~h------------------p------------YT~-----~Ll~a--------------------- 257 (539)
T COG1123 242 ILSN--------PQH------------------P------------YTR-----GLLAA--------------------- 257 (539)
T ss_pred HHhc--------cCC------------------c------------ccH-----HHHhh---------------------
Confidence 8851 110 0 000 00000
Q ss_pred ccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhh
Q 000937 308 LSRWELFKACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMS 387 (1218)
Q Consensus 308 ~s~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~ 387 (1218)
+
T Consensus 258 ----------------------------------------------------------------------------~--- 258 (539)
T COG1123 258 ----------------------------------------------------------------------------V--- 258 (539)
T ss_pred ----------------------------------------------------------------------------C---
Confidence 0
Q ss_pred hhccceeeecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhc
Q 000937 388 LERLAVFYKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETL 467 (1218)
Q Consensus 388 ~~~r~v~~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 467 (1218)
T Consensus 259 -------------------------------------------------------------------------------- 258 (539)
T COG1123 259 -------------------------------------------------------------------------------- 258 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHH
Q 000937 468 KIDQFMCFQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALF 547 (1218)
Q Consensus 468 ~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~ 547 (1218)
|... .
T Consensus 259 -p~~~-----------------------------~--------------------------------------------- 263 (539)
T COG1123 259 -PRLG-----------------------------D--------------------------------------------- 263 (539)
T ss_pred -CCcc-----------------------------c---------------------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEe
Q 000937 548 GLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSID 627 (1218)
Q Consensus 548 ~~~i~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 627 (1218)
. ... . .. .... . . ...-++.+||+..+.
T Consensus 264 -------------------~---~~~-------~--~~--~~~~--~-----~------------~~~ll~V~~l~k~y~ 291 (539)
T COG1123 264 -------------------E---KII-------R--LP--RRGP--L-----R------------AEPLLSVRNLSKRYG 291 (539)
T ss_pred -------------------c---ccc-------c--cc--cccc--c-----c------------cCceeEeeeeeeeec
Confidence 0 000 0 00 0000 0 0 112367778877776
Q ss_pred cCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC--cc---cccc
Q 000937 628 TPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK--IQ---ETFV 702 (1218)
Q Consensus 628 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~--~~---~~~~ 702 (1218)
.+..+. . ...+...+++||||++++||++||+|+||||||||.|+|+|+.+| .+|+|.++|.+. .. ...+
T Consensus 292 ~~~~~~-~--~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r 366 (539)
T COG1123 292 SRKGLF-V--RERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLR 366 (539)
T ss_pred cccccc-c--ccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhh
Confidence 432111 0 012346799999999999999999999999999999999999887 489999999772 11 1234
Q ss_pred ceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHH
Q 000937 703 RVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLSTEQRKRLT 779 (1218)
Q Consensus 703 ~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGerqRv~ 779 (1218)
+.+-+++|++ .+.|.+||++++......... ....++++++.++++..+|.. ..++. +.+||||||||++
T Consensus 367 ~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRva 439 (539)
T COG1123 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVA 439 (539)
T ss_pred hheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHH
Confidence 4566667765 678999999999876554322 224556678999999999984 34443 4689999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 780 IGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 780 ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
|||||+.+|++|++|||||.||+..+.+++++|+++.++ |.|.|++|||++ -+...||++++|. +|+++..||.
T Consensus 440 IARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~-~G~iVE~G~~ 514 (539)
T COG1123 440 IARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMY-DGRIVEEGPT 514 (539)
T ss_pred HHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEE-CCeEEEeCCH
Confidence 999999999999999999999999999999999999876 999999999985 4667899999998 6999999975
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=611.16 Aligned_cols=213 Identities=20% Similarity=0.291 Sum_probs=178.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++|+|++++|+. +.+++|+|+|++|+|||.+||+|+||||||||+++|.|+.+|. +|+|.+||.
T Consensus 1236 g~I~f~nVsf~Y~~------------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~--~G~I~IDG~ 1301 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP------------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE--RGRILIDGC 1301 (1622)
T ss_pred CcEEEEEEEEEeCC------------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC--CceEEECCE
Confidence 36899999999942 1236999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 764 (1218)
++.. ...|+.+++|||++.+|.. |++|||.+.. ..+ ++.+.++++..++. +-.|+.+|.
T Consensus 1302 dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1302 DISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred ecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccC
Confidence 8653 4567889999999998875 9999996531 111 23345555555443 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++ ....+|++++|+
T Consensus 1371 ~G-~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd 1446 (1622)
T PLN03130 1371 AG-ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLD 1446 (1622)
T ss_pred CC-CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEE
Confidence 54 4799999999999999999999999999999999999999999999874 4899999999875 467799999998
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
+|++++.|++++
T Consensus 1447 -~G~IvE~Gt~~e 1458 (1622)
T PLN03130 1447 -AGRVVEFDTPEN 1458 (1622)
T ss_pred -CCEEEEeCCHHH
Confidence 599999999864
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-56 Score=548.79 Aligned_cols=438 Identities=19% Similarity=0.287 Sum_probs=328.6
Q ss_pred CCCCCCCCcchhhccccee-----EEEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL-----VTGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~-----~~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|++||.++..... ++.++||+|++.+++.+||+|++.|....+..+.
T Consensus 36 l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~- 114 (506)
T PRK13549 36 LCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGI- 114 (506)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCC-
Confidence 6799999999999999984 37999999998865331 3458999999999999999999998754321000
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
...++. ...++++++.+||.+..|..++ .|||||||||+|||+++
T Consensus 115 ------~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 115 ------MDYDAM------------------------YLRAQKLLAQLKLDINPATPVG-----NLGLGQQQLVEIAKALN 159 (506)
T ss_pred ------cCHHHH------------------------HHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHh
Confidence 000000 1125678999999888887764 59999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHh
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~ 234 (1218)
.+| +||+|||||+|||+.+...+++.|+++++ .|+|+|++-|++ .++...+|+|++|.+|++++.|+.+++..
T Consensus 160 ~~p-~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~~---- 232 (506)
T PRK13549 160 KQA-RLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGMTE---- 232 (506)
T ss_pred cCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccCCH----
Confidence 887 89999999999999999999999999975 578888887754 46667899999999999999886432110
Q ss_pred CCCCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHH
Q 000937 235 CGFRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELF 314 (1218)
Q Consensus 235 lG~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~ 314 (1218)
...
T Consensus 233 ---------------------------------~~~-------------------------------------------- 235 (506)
T PRK13549 233 ---------------------------------DDI-------------------------------------------- 235 (506)
T ss_pred ---------------------------------HHH--------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhcccee
Q 000937 315 KACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVF 394 (1218)
Q Consensus 315 ~~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~ 394 (1218)
..+ + . +.+..
T Consensus 236 ---~~~-~----------------------------~--~~~~~------------------------------------ 245 (506)
T PRK13549 236 ---ITM-M----------------------------V--GRELT------------------------------------ 245 (506)
T ss_pred ---HHH-h----------------------------h--CcCcc------------------------------------
Confidence 000 0 0 00000
Q ss_pred eecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhh
Q 000937 395 YKQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMC 474 (1218)
Q Consensus 395 ~re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1218)
. . .
T Consensus 246 ------------------------------------------------~--~-------------------------~-- 248 (506)
T PRK13549 246 ------------------------------------------------A--L-------------------------Y-- 248 (506)
T ss_pred ------------------------------------------------c--c-------------------------c--
Confidence 0 0 0
Q ss_pred hhHhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHH
Q 000937 475 FQLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFN 554 (1218)
Q Consensus 475 ~~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~ 554 (1218)
T Consensus 249 -------------------------------------------------------------------------------- 248 (506)
T PRK13549 249 -------------------------------------------------------------------------------- 248 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhh
Q 000937 555 FAFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRR 634 (1218)
Q Consensus 555 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 634 (1218)
+. ... + . ....++++|+++.++.
T Consensus 249 ------------~~--------------------~~~---~---------~-------~~~~l~~~~l~~~~~~------ 271 (506)
T PRK13549 249 ------------PR--------------------EPH---T---------I-------GEVILEVRNLTAWDPV------ 271 (506)
T ss_pred ------------cc--------------------ccc---C---------C-------CCceEEEecCcccccc------
Confidence 00 000 0 0 0012567777765521
Q ss_pred hccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEecc
Q 000937 635 RECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQ 710 (1218)
Q Consensus 635 ~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q 710 (1218)
.+++.+|+|+|+++++||+++|+||||||||||+|+|+|..+|. .+|+|.++|+++... ..++.++|++|
T Consensus 272 -----~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 345 (506)
T PRK13549 272 -----NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR-WEGEIFIDGKPVKIRNPQQAIAQGIAMVPE 345 (506)
T ss_pred -----ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCC-CCcEEEECCEECCCCCHHHHHHCCCEEeCc
Confidence 01246899999999999999999999999999999999987631 389999999875321 12456899999
Q ss_pred CC---CCCCCCCHHHHHHHHHhhccCC--CCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000937 711 TD---IHSPHITIEESLFFSAWLRLAP--QINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVEL 784 (1218)
Q Consensus 711 ~~---~~~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L 784 (1218)
+. .+++.+||.||+.+........ ........++++++++.+++. +..++.+ .+|||||||||+||++|
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al 420 (506)
T PRK13549 346 DRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCL 420 (506)
T ss_pred chhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHH
Confidence 85 4778899999998753211110 012223345688899999996 4566664 47999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCC
Q 000937 785 VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNH 858 (1218)
Q Consensus 785 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 858 (1218)
+.+|++|+|||||+|||+.++..+.++|++++++|+|||++||+++ ++.+.||++++|. +|+++..|++++.
T Consensus 421 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~~~ 492 (506)
T PRK13549 421 LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMH-EGKLKGDLINHNL 492 (506)
T ss_pred hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEeccccC
Confidence 9999999999999999999999999999999888999999999985 6778899999997 5999999987653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=600.83 Aligned_cols=212 Identities=18% Similarity=0.276 Sum_probs=177.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++|+|++++|+. +.+++|+|+|++|+|||.+||+||||||||||+++|.|+.+|. +|+|.+||.+
T Consensus 1234 ~I~f~nVsf~Y~~------------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~--~G~I~IdG~d 1299 (1495)
T PLN03232 1234 SIKFEDVHLRYRP------------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE--KGRIMIDDCD 1299 (1495)
T ss_pred cEEEEEEEEEECC------------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CceEEECCEE
Confidence 5899999999942 1246999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 765 (1218)
+.+ ..+|+.++||||++.+++. |++|||.+. ...+ ++.+.++++..++. +-.|+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~------~~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPF------SEHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCC------CCCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 643 4567889999999998874 999999642 1112 23355566655553 3356777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+ ..||||||||++|||||+++|+||+||||||+||+++.+.|.+.|++.. +++|+|+++|+++ ....+|++++|+
T Consensus 1369 G-~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~- 1443 (1495)
T PLN03232 1369 G-ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLS- 1443 (1495)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEE-
Confidence 4 5799999999999999999999999999999999999999999999864 4899999999874 467799999998
Q ss_pred CCEEEEEcCCCC
Q 000937 846 GGRIIYSGPLGN 857 (1218)
Q Consensus 846 ~G~~~~~g~~~~ 857 (1218)
+|++++.|++++
T Consensus 1444 ~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1444 SGQVLEYDSPQE 1455 (1495)
T ss_pred CCEEEEECCHHH
Confidence 599999998743
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=545.53 Aligned_cols=437 Identities=19% Similarity=0.265 Sum_probs=325.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV----PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~----~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.... .++.++||+|++.+++.+||+|++.++...... ...
T Consensus 36 liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~--~~~ 113 (510)
T PRK09700 36 LLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKK--VCG 113 (510)
T ss_pred EECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccc--ccc
Confidence 6799999999999999995 4899999999886532 124589999999999999999999885421000 000
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
.. ..+.++. ...++++++.+||.+..|..++ .|||||||||+||++++.+
T Consensus 114 ~~-~~~~~~~------------------------~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~ia~al~~~ 163 (510)
T PRK09700 114 VN-IIDWREM------------------------RVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLD 163 (510)
T ss_pred cc-ccCHHHH------------------------HHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcC
Confidence 00 0000000 1135678999999988888765 5999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCG 236 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG 236 (1218)
| +||+|||||+|||+.+...+++.|+++++ .|+|||++-|. ..++...+|++++|.+|++++.|+++++..
T Consensus 164 p-~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~------ 234 (510)
T PRK09700 164 A-KVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMVSDVSN------ 234 (510)
T ss_pred C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEEEEEECCEEeeecchhhCCH------
Confidence 7 89999999999999999999999999976 48888887664 446667899999999999999987653210
Q ss_pred CCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHHHH
Q 000937 237 FRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKA 316 (1218)
Q Consensus 237 ~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 316 (1218)
+ +..
T Consensus 235 -------------------------------~-----------------~~~---------------------------- 238 (510)
T PRK09700 235 -------------------------------D-----------------DIV---------------------------- 238 (510)
T ss_pred -------------------------------H-----------------HHH----------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhccceeee
Q 000937 317 CMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFYK 396 (1218)
Q Consensus 317 l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~~r 396 (1218)
.+ .. +....
T Consensus 239 --~~-----------------------------~~--~~~~~-------------------------------------- 247 (510)
T PRK09700 239 --RL-----------------------------MV--GRELQ-------------------------------------- 247 (510)
T ss_pred --HH-----------------------------hc--CCCcc--------------------------------------
Confidence 00 00 00000
Q ss_pred cccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhhhh
Q 000937 397 QKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCFQ 476 (1218)
Q Consensus 397 e~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1218)
. . ..
T Consensus 248 ------------------------------------------~---~---------------------------~~---- 251 (510)
T PRK09700 248 ------------------------------------------N---R---------------------------FN---- 251 (510)
T ss_pred ------------------------------------------c---c---------------------------cc----
Confidence 0 0 00
Q ss_pred HhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHHH
Q 000937 477 LEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFA 556 (1218)
Q Consensus 477 ~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~ 556 (1218)
T Consensus 252 -------------------------------------------------------------------------------- 251 (510)
T PRK09700 252 -------------------------------------------------------------------------------- 251 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhc
Q 000937 557 FALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRE 636 (1218)
Q Consensus 557 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 636 (1218)
.. . ... . . .. .+..++++|+++.+
T Consensus 252 -----------~~-~-----------------~~~--~---~-----~~-------~~~~l~~~~l~~~~---------- 275 (510)
T PRK09700 252 -----------AM-K-----------------ENV--S---N-----LA-------HETVFEVRNVTSRD---------- 275 (510)
T ss_pred -----------cc-c-----------------ccc--c---c-----CC-------CCcEEEEeCccccC----------
Confidence 00 0 000 0 0 00 01136777777532
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEeccC-
Q 000937 637 CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQT- 711 (1218)
Q Consensus 637 ~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~- 711 (1218)
..+|+|+|+++++||+++|+||||||||||+|+|+|..+| .+|+|.++|++.... ..++.++|++|+
T Consensus 276 ------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~ 347 (510)
T PRK09700 276 ------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESR 347 (510)
T ss_pred ------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCcc
Confidence 1379999999999999999999999999999999998876 489999999875321 234568999998
Q ss_pred --CCCCCCCCHHHHHHHHHhhc---cCC--C-CChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHH
Q 000937 712 --DIHSPHITIEESLFFSAWLR---LAP--Q-INSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGV 782 (1218)
Q Consensus 712 --~~~~~~lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~ 782 (1218)
..+++.+||.||+.+....+ ... . ......++.++++++.+++. +..++.+ .+|||||||||+|||
T Consensus 348 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAr 422 (510)
T PRK09700 348 RDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISK 422 (510)
T ss_pred ccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHH
Confidence 45788999999998753211 000 0 01222335578899999996 6667665 479999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 783 ELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 783 ~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
+|+.+|++|||||||+|||+.++..+.++|++++++|+|||++|||++ ++.+.||++++|. +|+++..++.
T Consensus 423 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 493 (510)
T PRK09700 423 WLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFC-EGRLTQILTN 493 (510)
T ss_pred HHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEE-CCEEEEEecC
Confidence 999999999999999999999999999999999888999999999985 5778899999997 5899988865
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-56 Score=541.51 Aligned_cols=429 Identities=19% Similarity=0.297 Sum_probs=324.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV----PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~----~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|++||.++.... .++.++||+|++.+++.+||+|++.|+........
T Consensus 35 l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~--- 111 (501)
T PRK10762 35 LVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFG--- 111 (501)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccC---
Confidence 6799999999999999995 4799999999875322 13458999999999999999999998654321000
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
..+.++. ...++++++.+||.+..|..++ .|||||||||+||++++.+
T Consensus 112 ---~~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~ 159 (501)
T PRK10762 112 ---RIDWKKM------------------------YAEADKLLARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFE 159 (501)
T ss_pred ---ccCHHHH------------------------HHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHhcC
Confidence 0000000 1124678999999998887765 4999999999999999888
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCG 236 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG 236 (1218)
| ++|+|||||+|||+.+...+++.|+++++ .|+|+|++-|++ .++...+|+|++|.+|+++..|+.+++..
T Consensus 160 p-~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~------ 230 (501)
T PRK10762 160 S-KVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADLTE------ 230 (501)
T ss_pred C-CEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcCCH------
Confidence 7 89999999999999999999999999975 488888887754 46778899999999999998876432110
Q ss_pred CCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHHHH
Q 000937 237 FRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKA 316 (1218)
Q Consensus 237 ~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 316 (1218)
+.. .
T Consensus 231 -------------------------------~~~-----------------~---------------------------- 234 (501)
T PRK10762 231 -------------------------------DSL-----------------I---------------------------- 234 (501)
T ss_pred -------------------------------HHH-----------------H----------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhccceeee
Q 000937 317 CMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFYK 396 (1218)
Q Consensus 317 l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~~r 396 (1218)
.+ ++ +...
T Consensus 235 --~~-----------------------------~~--~~~~--------------------------------------- 242 (501)
T PRK10762 235 --EM-----------------------------MV--GRKL--------------------------------------- 242 (501)
T ss_pred --HH-----------------------------hc--CCCc---------------------------------------
Confidence 00 00 0000
Q ss_pred cccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhhhh
Q 000937 397 QKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCFQ 476 (1218)
Q Consensus 397 e~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1218)
. . .
T Consensus 243 -----------------------------------------~-------~-------------------------~---- 245 (501)
T PRK10762 243 -----------------------------------------E-------D-------------------------Q---- 245 (501)
T ss_pred -----------------------------------------c-------c-------------------------c----
Confidence 0 0 0
Q ss_pred HhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHHH
Q 000937 477 LEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFA 556 (1218)
Q Consensus 477 ~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~ 556 (1218)
T Consensus 246 -------------------------------------------------------------------------------- 245 (501)
T PRK10762 246 -------------------------------------------------------------------------------- 245 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhc
Q 000937 557 FALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRE 636 (1218)
Q Consensus 557 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 636 (1218)
.+. ... . + .+..++++|++.
T Consensus 246 ---------~~~--------------------~~~------------~------~-~~~~l~~~~l~~------------ 265 (501)
T PRK10762 246 ---------YPR--------------------LDK------------A------P-GEVRLKVDNLSG------------ 265 (501)
T ss_pred ---------ccc--------------------ccc------------C------C-CCcEEEEeCccc------------
Confidence 000 000 0 0 001255666541
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEeccCC
Q 000937 637 CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQTD 712 (1218)
Q Consensus 637 ~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~ 712 (1218)
.+|+|+|+++++||+++|+||||||||||+|+|+|..+|. +|+|.++|+++... ..++.++|++|++
T Consensus 266 -------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~--~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 336 (501)
T PRK10762 266 -------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT--SGYVTLDGHEVVTRSPQDGLANGIVYISEDR 336 (501)
T ss_pred -------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence 2699999999999999999999999999999999998764 89999999875321 2345699999995
Q ss_pred ---CCCCCCCHHHHHHHHHhhccCC---CCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 000937 713 ---IHSPHITIEESLFFSAWLRLAP---QINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELV 785 (1218)
Q Consensus 713 ---~~~~~lTv~e~l~~~~~~~~~~---~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~ 785 (1218)
.+++.+||.||+.+........ .....+..+.++++++.+++. +..++.+ .+|||||||||+||++|+
T Consensus 337 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~ 411 (501)
T PRK10762 337 KRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLM 411 (501)
T ss_pred ccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHh
Confidence 5778899999998753211100 012223345688899999995 5666664 479999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 786 ANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 786 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..|++++
T Consensus 412 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~~ 481 (501)
T PRK10762 412 TRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMH-EGRISGEFTREQ 481 (501)
T ss_pred hCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEE-CCEEEEEecccc
Confidence 999999999999999999999999999999888999999999985 6778899999997 599999998754
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=545.50 Aligned_cols=202 Identities=23% Similarity=0.323 Sum_probs=169.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc------cccceEEEeccCC--CC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE------TFVRVSGYCEQTD--IH 714 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~ 714 (1218)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+|+|.++|+++... .+++.++|++|+. .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999874 389999999875321 1245689999986 47
Q ss_pred CCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000937 715 SPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFM 793 (1218)
Q Consensus 715 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llll 793 (1218)
++.+||.||+.++...+.. .....+.+++++++++.+++. +..+..+ .+|||||||||+||++|+.+|++|||
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 7889999999886532211 112233446688899999996 4556554 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 794 DEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 794 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|++
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 510 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLR-QGEVVEQGDC 510 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEEEcCH
Confidence 9999999999999999999999875 899999999975 5677899999998 5899999875
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=539.53 Aligned_cols=217 Identities=23% Similarity=0.327 Sum_probs=176.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC-CEe
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVN-GYP 695 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~-g~~ 695 (1218)
++++|+++.++.. ..+.+.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~---------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~ 348 (520)
T TIGR03269 280 IKVRNVSKRYISV---------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDE 348 (520)
T ss_pred EEEeccEEEeccC---------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCc
Confidence 6788888877310 00124699999999999999999999999999999999999876 48999996 532
Q ss_pred ---Ccc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-----ccccc
Q 000937 696 ---KIQ------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-----IKESL 761 (1218)
Q Consensus 696 ---~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~ 761 (1218)
... ...++.++|++|++.+++.+||.||+.+...+. ...+..+++++++++.+++.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 111 112456899999988889999999998754321 122223456788999999964 34554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceE
Q 000937 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDEL 840 (1218)
Q Consensus 762 ~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 840 (1218)
+ .+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ .+.+.+|++
T Consensus 425 ~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i 498 (520)
T TIGR03269 425 P-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRA 498 (520)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEE
Confidence 3 589999999999999999999999999999999999999999999999765 999999999985 567789999
Q ss_pred EEEecCCEEEEEcCC
Q 000937 841 ILLKTGGRIIYSGPL 855 (1218)
Q Consensus 841 ~~l~~~G~~~~~g~~ 855 (1218)
++|. +|+++..|++
T Consensus 499 ~~l~-~G~i~~~g~~ 512 (520)
T TIGR03269 499 ALMR-DGKIVKIGDP 512 (520)
T ss_pred EEEE-CCEEEEECCH
Confidence 9997 5899998875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=547.51 Aligned_cols=227 Identities=21% Similarity=0.242 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++....... ...+.+++|+||||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 313 ~L~~~~l~~~y~~~~~~~~---~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~ 387 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLN---RVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQR 387 (623)
T ss_pred eEEEeeeEEEEcCCCcccc---ccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEE
Confidence 4899999998852100000 000124699999999999999999999999999999999999876 48999999987
Q ss_pred Cccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCC
Q 000937 696 KIQE------TFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPG 766 (1218)
Q Consensus 696 ~~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 766 (1218)
+... .+++.++|++|++ .+++.+||.|++.+...... .....+..++++++++.+||. +..++.+
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---- 461 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP---- 461 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc----
Confidence 5321 2346799999986 58899999999987653321 112333456788999999995 4556553
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++|||++ .+...+|++++|.
T Consensus 462 -~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~- 538 (623)
T PRK10261 462 -HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMY- 538 (623)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 589999999999999999999999999999999999999999999999875 999999999985 5677899999997
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|++++.|+++
T Consensus 539 ~G~iv~~g~~~ 549 (623)
T PRK10261 539 LGQIVEIGPRR 549 (623)
T ss_pred CCEEEEecCHH
Confidence 59999999864
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=535.43 Aligned_cols=433 Identities=19% Similarity=0.244 Sum_probs=322.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|.++|.++..... ++.++||+|++.+++.+||+|++.|....+
T Consensus 42 liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~------- 114 (510)
T PRK15439 42 LLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKR------- 114 (510)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccc-------
Confidence 6799999999999999995 48999999998764321 235899999999999999999998853210
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
++. ...++++++.+||.+..|..++ .|||||||||+|||+++.+
T Consensus 115 -------~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 115 -------QAS------------------------MQKMKQLLAALGCQLDLDSSAG-----SLEVADRQIVEILRGLMRD 158 (510)
T ss_pred -------hHH------------------------HHHHHHHHHHcCCCccccCChh-----hCCHHHHHHHHHHHHHHcC
Confidence 000 0124677999999988887764 4999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCG 236 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG 236 (1218)
| +||+|||||+|||+.+...+.+.|+++++ .|+|||++-|.+ .++...+|+|++|.+|++++.|++++....
T Consensus 159 p-~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----- 230 (510)
T PRK15439 159 S-RILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLSTD----- 230 (510)
T ss_pred C-CEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcCHH-----
Confidence 7 89999999999999999999999999976 488888887653 456788999999999999999886543210
Q ss_pred CCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHHHH
Q 000937 237 FRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKA 316 (1218)
Q Consensus 237 ~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 316 (1218)
...+.+
T Consensus 231 --------------------------------~~~~~~------------------------------------------ 236 (510)
T PRK15439 231 --------------------------------DIIQAI------------------------------------------ 236 (510)
T ss_pred --------------------------------HHHHHH------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhccceeee
Q 000937 317 CMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFYK 396 (1218)
Q Consensus 317 l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~~r 396 (1218)
. +....
T Consensus 237 ----------------------------------~--~~~~~-------------------------------------- 242 (510)
T PRK15439 237 ----------------------------------T--PAARE-------------------------------------- 242 (510)
T ss_pred ----------------------------------h--Ccccc--------------------------------------
Confidence 0 00000
Q ss_pred cccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhhhh
Q 000937 397 QKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCFQ 476 (1218)
Q Consensus 397 e~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1218)
.. ... . . .
T Consensus 243 -~~-------------------------------------~~~-~----~-------------------------~---- 250 (510)
T PRK15439 243 -KS-------------------------------------LSA-S----Q-------------------------K---- 250 (510)
T ss_pred -cc-------------------------------------ccc-c----c-------------------------c----
Confidence 00 000 0 0 0
Q ss_pred HhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHHH
Q 000937 477 LEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFA 556 (1218)
Q Consensus 477 ~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~ 556 (1218)
. . +.
T Consensus 251 -~-----------------------~-----------------------------~~----------------------- 254 (510)
T PRK15439 251 -L-----------------------W-----------------------------LE----------------------- 254 (510)
T ss_pred -c-----------------------c-----------------------------cc-----------------------
Confidence 0 0 00
Q ss_pred HHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhc
Q 000937 557 FALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRE 636 (1218)
Q Consensus 557 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 636 (1218)
.+. ... . ... .+..++.+|++.
T Consensus 255 ---------~~~--------------------~~~------~----~~~-------~~~~l~~~~l~~------------ 276 (510)
T PRK15439 255 ---------LPG--------------------NRR------Q----QAA-------GAPVLTVEDLTG------------ 276 (510)
T ss_pred ---------ccc--------------------ccc------c----cCC-------CCceEEEeCCCC------------
Confidence 000 000 0 000 011356666651
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEeccCC
Q 000937 637 CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQTD 712 (1218)
Q Consensus 637 ~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~ 712 (1218)
.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|.++... ..++.++|++|+.
T Consensus 277 -------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 347 (510)
T PRK15439 277 -------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR--GGRIMLNGKEINALSTAQRLARGLVYLPEDR 347 (510)
T ss_pred -------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CcEEEECCEECCCCCHHHHHhCCcEECCCCh
Confidence 1589999999999999999999999999999999987764 89999999875321 1234689999974
Q ss_pred ---CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000937 713 ---IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANP 788 (1218)
Q Consensus 713 ---~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p 788 (1218)
.+++.+|+.||+.................++.++++++.+++. +..++.+ +.|||||||||+||++|+.+|
T Consensus 348 ~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p 422 (510)
T PRK15439 348 QSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASP 422 (510)
T ss_pred hhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCC
Confidence 4788899999986421111110011222345678899999996 5666664 479999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 789 SIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 789 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
++|||||||+|||+.++..+.+.|++++++|.|||++|||++ ++.+.||++++|. +|+++..|.+++
T Consensus 423 ~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~~ 489 (510)
T PRK15439 423 QLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGAA 489 (510)
T ss_pred CEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEcccc
Confidence 999999999999999999999999999888999999999986 6778899999997 699999887754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-55 Score=533.02 Aligned_cols=221 Identities=18% Similarity=0.302 Sum_probs=177.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.+.. .+++.+|+|+|+++++||+++|+||||||||||||+|+|..+|. .+|+|.++|+++
T Consensus 258 l~~~~l~~~~~~-----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~~G~i~~~g~~~ 325 (500)
T TIGR02633 258 LEARNLTCWDVI-----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK-FEGNVFINGKPV 325 (500)
T ss_pred EEEeCCcccccc-----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC-CCeEEEECCEEC
Confidence 667777765421 01246899999999999999999999999999999999987641 379999999876
Q ss_pred cc----ccccceEEEeccCC---CCCCCCCHHHHHHHHHhhccCC--CCChhhHHHHHHHHHHHcCCCc-cccccccCCC
Q 000937 697 IQ----ETFVRVSGYCEQTD---IHSPHITIEESLFFSAWLRLAP--QINSKTKADCVNHVLKTIELDG-IKESLVGIPG 766 (1218)
Q Consensus 697 ~~----~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~ 766 (1218)
.. ...++.++|++|+. .+++.+||+||+.++..-.... .......++.++++++.+++.+ ..++.+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 401 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI---- 401 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc----
Confidence 32 12345689999995 5788999999998753211100 1122233456788999999964 456654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||++ ++.+.+|+++++. +
T Consensus 402 -~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~-~ 478 (500)
T TIGR02633 402 -GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIG-E 478 (500)
T ss_pred -ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-C
Confidence 479999999999999999999999999999999999999999999999888999999999985 6778899999997 5
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|+++..++.+
T Consensus 479 G~i~~~~~~~ 488 (500)
T TIGR02633 479 GKLKGDFVNH 488 (500)
T ss_pred CEEEEEEccc
Confidence 8999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=529.62 Aligned_cols=206 Identities=20% Similarity=0.364 Sum_probs=171.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc----ccccceEEEeccCC---CCCC
Q 000937 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ----ETFVRVSGYCEQTD---IHSP 716 (1218)
Q Consensus 644 ~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~ 716 (1218)
.+++|+|+++++||+++|+||||||||||+|+|+|..+| .+|+|.++|++... ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 479999999999999999999999999999999998876 48999999987532 12245689999985 4788
Q ss_pred CCCHHHHHHHHHhhccCC-C--CChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 000937 717 HITIEESLFFSAWLRLAP-Q--INSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIF 792 (1218)
Q Consensus 717 ~lTv~e~l~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~lll 792 (1218)
.+|+.||+.+........ . ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEE
Confidence 999999998753211100 0 01222335678899999994 5667665 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCC
Q 000937 793 MDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNH 858 (1218)
Q Consensus 793 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 858 (1218)
|||||+|||+.++..++++|++++++|.|||++|||++ ++.+.+|+++++. +|++++.|++++.
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~-~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMR-EGRIAGELAREQA 483 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEE-CCEEEEEEccccC
Confidence 99999999999999999999999888999999999985 6778899999998 5899999988653
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=580.47 Aligned_cols=213 Identities=19% Similarity=0.229 Sum_probs=177.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++|+|++++|+.. ...+|+|+|++|+|||.+||+|+||||||||+++|.|+.++ .+|+|.+||.
T Consensus 1283 g~I~f~nVsf~Y~~~------------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~ 1348 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED------------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGL 1348 (1522)
T ss_pred CcEEEEEEEEEeCCC------------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCE
Confidence 368999999999531 23699999999999999999999999999999999999887 4899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 764 (1218)
++.. ...|+.+++|||++.+|+. |++|||... ...+ ++.+.++++..++. +-.|+.+|.
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~------~~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPF------SQYS----DEEVWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccCc-cHHHHcCcc------cCCC----HHHHHHHHHHcCcHHHHhhCccCCCceecC
Confidence 8653 4567889999999999875 999999521 0112 23355566666553 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|||+++|+++ ....+|++++|+
T Consensus 1418 ~G-~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld 1493 (1522)
T TIGR00957 1418 GG-ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLD 1493 (1522)
T ss_pred CC-CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE
Confidence 44 5799999999999999999999999999999999999999999999864 4899999999874 577899999998
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
+|++++.|++++
T Consensus 1494 -~G~IvE~G~~~e 1505 (1522)
T TIGR00957 1494 -KGEVAEFGAPSN 1505 (1522)
T ss_pred -CCEEEEECCHHH
Confidence 699999999753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=518.73 Aligned_cols=429 Identities=17% Similarity=0.239 Sum_probs=319.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhh-ccCCCCch
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV----PQKLSAYVSQYDLHIPEMTVRETLDFSTY-CQGVGSRA 75 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~----~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~-lk~~~~~~ 75 (1218)
|.|++|||||||.+...|. .+|+|++||.++.... .++.++||+|+..+++.+||+|++.|... .++..
T Consensus 29 liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~--- 105 (491)
T PRK10982 29 LMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF--- 105 (491)
T ss_pred EECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccc---
Confidence 6799999999999999995 4899999999875432 23468999999989999999999988532 11000
Q ss_pred hhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 76 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
.+.++. ...++.+++.+||.+..|..++ .|||||||||+|||+++.
T Consensus 106 -----~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 106 -----VDQDKM------------------------YRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred -----cCHHHH------------------------HHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHHh
Confidence 000000 0124677899999888887764 599999999999999998
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhC
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESC 235 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~l 235 (1218)
+| +||+|||||+|||+.+...+.+.|+++++ .|+|+|++-|.+ .++...+|+|++|.+|++++.|++++...
T Consensus 152 ~p-~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~----- 223 (491)
T PRK10982 152 NA-KIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGLTM----- 223 (491)
T ss_pred CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhCCH-----
Confidence 88 79999999999999999999999999975 578888876654 46778899999999999998776432100
Q ss_pred CCCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHHH
Q 000937 236 GFRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315 (1218)
Q Consensus 236 G~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~ 315 (1218)
. +
T Consensus 224 --------------------------------~-----------------~----------------------------- 225 (491)
T PRK10982 224 --------------------------------D-----------------K----------------------------- 225 (491)
T ss_pred --------------------------------H-----------------H-----------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhccceee
Q 000937 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFY 395 (1218)
Q Consensus 316 ~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~~ 395 (1218)
...+ + . +.+.
T Consensus 226 -~~~~-~----------------------------~--~~~~-------------------------------------- 235 (491)
T PRK10982 226 -IIAM-M----------------------------V--GRSL-------------------------------------- 235 (491)
T ss_pred -HHHH-H----------------------------h--CCCc--------------------------------------
Confidence 0000 0 0 0000
Q ss_pred ecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhhh
Q 000937 396 KQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCF 475 (1218)
Q Consensus 396 re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1218)
. . .
T Consensus 236 --------------------------------------------------~----------------------~--~--- 238 (491)
T PRK10982 236 --------------------------------------------------T----------------------Q--R--- 238 (491)
T ss_pred --------------------------------------------------c----------------------c--c---
Confidence 0 0 0
Q ss_pred hHhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHH
Q 000937 476 QLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNF 555 (1218)
Q Consensus 476 ~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~ 555 (1218)
T Consensus 239 -------------------------------------------------------------------------------- 238 (491)
T PRK10982 239 -------------------------------------------------------------------------------- 238 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhh
Q 000937 556 AFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRR 635 (1218)
Q Consensus 556 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 635 (1218)
.+. ... .. .+..++++|+++..
T Consensus 239 ----------~~~--------------------~~~------------~~-------~~~~i~~~~l~~~~--------- 260 (491)
T PRK10982 239 ----------FPD--------------------KEN------------KP-------GEVILEVRNLTSLR--------- 260 (491)
T ss_pred ----------ccc--------------------ccC------------CC-------CCcEEEEeCccccc---------
Confidence 000 000 00 01236777777641
Q ss_pred ccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEeccC
Q 000937 636 ECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQT 711 (1218)
Q Consensus 636 ~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~ 711 (1218)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.++... ..++.++|++|+
T Consensus 261 -------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~ 331 (491)
T PRK10982 261 -------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEE 331 (491)
T ss_pred -------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCc
Confidence 2489999999999999999999999999999999998876 489999999876421 124558999998
Q ss_pred C---CCCCCCCHHHHHHHHHh--h-ccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000937 712 D---IHSPHITIEESLFFSAW--L-RLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVEL 784 (1218)
Q Consensus 712 ~---~~~~~lTv~e~l~~~~~--~-~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L 784 (1218)
. .+++++|+.+|..+... . ...........++.++++++.+++. +..++.+ .+|||||||||+||++|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al 406 (491)
T PRK10982 332 RRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWL 406 (491)
T ss_pred hhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHH
Confidence 5 36788888877432210 0 0000011223345678889999885 3455554 48999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 785 VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 785 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..++..
T Consensus 407 ~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~-~g~i~~~~~~~ 476 (491)
T PRK10982 407 LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMS-NGLVAGIVDTK 476 (491)
T ss_pred hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEE-CCEEEEEEccc
Confidence 9999999999999999999999999999999888999999999985 5778899999997 58999877654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=561.26 Aligned_cols=212 Identities=22% Similarity=0.255 Sum_probs=178.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
-.|+|+|++++|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|+.++ .+|+|++||.
T Consensus 1307 G~I~f~nVsf~Y~~------------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~ 1372 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE------------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGR 1372 (1560)
T ss_pred CeEEEEEEEEEeCC------------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCE
Confidence 36999999999952 123599999999999999999999999999999999999887 4899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 764 (1218)
++.. ..+++.++||||++.+|+. |++|||... ...+ ++.+.++++..++.+ -.|+.+|.
T Consensus 1373 di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge 1441 (1560)
T PTZ00243 1373 EIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLE 1441 (1560)
T ss_pred EcccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccC
Confidence 8653 4567889999999998874 999999531 1111 244666777766643 35677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVAN-PSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~-p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
.+ ..||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. +++|||+++|++ +....+|++++|
T Consensus 1442 ~G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVL 1517 (1560)
T PTZ00243 1442 GG-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVM 1517 (1560)
T ss_pred Cc-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEE
Confidence 44 57999999999999999995 89999999999999999999999999864 479999999987 457889999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
+ +|++++.|+++
T Consensus 1518 d-~G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1518 D-HGAVAEMGSPR 1529 (1560)
T ss_pred E-CCEEEEECCHH
Confidence 8 59999999874
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=509.44 Aligned_cols=216 Identities=19% Similarity=0.293 Sum_probs=168.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..+|+|.++|++
T Consensus 260 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~ 324 (490)
T PRK10938 260 RIVLNNGVVSYN--------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRR 324 (490)
T ss_pred eEEEeceEEEEC--------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEeccc
Confidence 478999998873 24699999999999999999999999999999999997543 137999999976
Q ss_pred Ccc----ccccceEEEeccCCCCCC--CCCHHHHHHHHHhh--ccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDIHSP--HITIEESLFFSAWL--RLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPG 766 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~~~~--~lTv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~ 766 (1218)
... ...++.++|++|++.+++ ..|+++++.+.... ..... .....+++++++++.+++.+ ..++.+
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 399 (490)
T PRK10938 325 RGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQA-VSDRQQKLAQQWLDILGIDKRTADAPF---- 399 (490)
T ss_pred CCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccC-CCHHHHHHHHHHHHHcCCchhhccCch----
Confidence 421 123456999999875543 35777766543211 00011 11223456889999999986 666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCCHHHHH-hhceEEEEe
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG-RTIVCTIHQPSIDIFE-SFDELILLK 844 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~-~~d~~~~l~ 844 (1218)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++||+++ ++.+ .+|++++|.
T Consensus 400 -~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~ 477 (490)
T PRK10938 400 -HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVP 477 (490)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEec
Confidence 4799999999999999999999999999999999999999999999998776 47999999985 4555 478888887
Q ss_pred cCCEEEEEcC
Q 000937 845 TGGRIIYSGP 854 (1218)
Q Consensus 845 ~~G~~~~~g~ 854 (1218)
+|+++..-.
T Consensus 478 -~G~i~~~~~ 486 (490)
T PRK10938 478 -DGDIYRYVQ 486 (490)
T ss_pred -CCceEEeec
Confidence 588876543
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=513.57 Aligned_cols=214 Identities=21% Similarity=0.281 Sum_probs=175.0
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
.-.++|+|++..|.. +...+|+|||++|+|||.+||+|..|||||||.++|-++..+ .+|+|.+||
T Consensus 1136 ~G~I~f~~~~~RYrp------------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDg 1201 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRP------------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDG 1201 (1381)
T ss_pred CCeEEEEEeEEEeCC------------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcC
Confidence 357999999999853 234799999999999999999999999999999999998776 489999999
Q ss_pred EeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------cccccccc
Q 000937 694 YPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVG 763 (1218)
Q Consensus 694 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~ 763 (1218)
.++.. ...|++++.+|||+.+|. -|+|.||. |.+ +-.++.+.++++..+|. +-.|..+.
T Consensus 1202 vdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLD-------Pf~---e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~ 1270 (1381)
T KOG0054|consen 1202 VDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLD-------PFD---EYSDDEIWEALERCQLKDVVSSLPGGLDSEVS 1270 (1381)
T ss_pred eecccccHHHHHhcCeeeCCCCceec-CccccccC-------ccc---ccCHHHHHHHHHHhChHHHHhhCCcCCCceec
Confidence 99764 457888999999999986 59999984 111 11123344555554443 23455555
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
.. ..++|-||||.+++||||+++++||+|||+|++.|+++-..|.+.||+-= +++|||.+.|+.+ ..-.+|+|+||
T Consensus 1271 eg-G~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~--TVmd~DrVlVl 1346 (1381)
T KOG0054|consen 1271 EG-GENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLN--TVMDSDRVLVL 1346 (1381)
T ss_pred CC-CccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccc--hhhhcCeEEEe
Confidence 43 36899999999999999999999999999999999999999999999843 4799999999986 35579999999
Q ss_pred ecCCEEEEEcCCCC
Q 000937 844 KTGGRIIYSGPLGN 857 (1218)
Q Consensus 844 ~~~G~~~~~g~~~~ 857 (1218)
+ .|+++++|+|.+
T Consensus 1347 d-~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1347 D-AGRVVEFDSPAE 1359 (1381)
T ss_pred e-CCeEeecCChHH
Confidence 8 599999999854
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=549.73 Aligned_cols=212 Identities=19% Similarity=0.275 Sum_probs=177.8
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++|+|++++|+. +.+.+|+|+|++|+|||.+||+|+||||||||+++|.|+.+ .+|+|.+||.
T Consensus 1216 g~I~f~nVs~~Y~~------------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~ 1280 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE------------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGV 1280 (1490)
T ss_pred CeEEEEEEEEEeCC------------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCE
Confidence 46899999999952 23479999999999999999999999999999999999875 3799999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 764 (1218)
++.. ..+++.++||||++.+|+. |+||||.... . ..++.+.++++..++. +-.|+.++.
T Consensus 1281 di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~----~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e 1349 (1490)
T TIGR01271 1281 SWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------Q----WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD 1349 (1490)
T ss_pred EcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------C----CCHHHHHHHHHHCCCHHHHHhCcccccccccc
Confidence 8653 3567889999999999875 9999995311 1 1234466777777664 235677775
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.| ..||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....+|++++|+
T Consensus 1350 ~G-~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~ 1425 (1490)
T TIGR01271 1350 GG-YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIE 1425 (1490)
T ss_pred CC-CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE
Confidence 43 5799999999999999999999999999999999999999999999864 4799999999874 567899999998
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
+|+++..|++.+
T Consensus 1426 -~G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1426 -GSSVKQYDSIQK 1437 (1490)
T ss_pred -CCEEEEeCCHHH
Confidence 599999998743
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-51 Score=441.45 Aligned_cols=229 Identities=24% Similarity=0.346 Sum_probs=188.8
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
+.++.+|+...++.+..+-+. ......++++||+++++||.++|+|.||||||||=.+|.++.++ +|+|.++|+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r---~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~ 348 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRR---TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQ 348 (534)
T ss_pred ceEEecceEEEEecCCccccc---cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCc
Confidence 446666776666654332211 11235789999999999999999999999999999999998876 699999999
Q ss_pred eCcc------ccccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCC
Q 000937 695 PKIQ------ETFVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 695 ~~~~------~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
++.. ...++.+-.|+||+. +.|.+||.|-+.-+.....+ ..+..++.+++.+++++.||+.-. +...
T Consensus 349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~--r~RY-- 423 (534)
T COG4172 349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT--RNRY-- 423 (534)
T ss_pred cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH--hhcC--
Confidence 8653 235677889999974 78999999999887765533 456778889999999999998532 2222
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+.+.|||||||++||||++.+|++++||||||+||-.-+.+|+++|++|.++ |.+-++++||+. -+-.+||++++|.
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~- 501 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR- 501 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-
Confidence 3689999999999999999999999999999999999999999999999755 999999999985 4567899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|++|++|+.+
T Consensus 502 ~GkiVE~G~~~ 512 (534)
T COG4172 502 DGKIVEQGPTE 512 (534)
T ss_pred CCEEeeeCCHH
Confidence 69999999963
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=488.34 Aligned_cols=198 Identities=21% Similarity=0.311 Sum_probs=165.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+|. +|+|.++|.
T Consensus 319 ~l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~~~~~- 381 (530)
T PRK15064 319 ALEVENLTKGFD--------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD--SGTVKWSEN- 381 (530)
T ss_pred eEEEEeeEEeeC--------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCc-
Confidence 589999999873 246999999999999999999999999999999999988764 899999873
Q ss_pred CccccccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000937 696 KIQETFVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLST 772 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSg 772 (1218)
+.+||++|+.. +++.+||.|++.+.. . . ...+++++++++.+++. +..+..+ .+|||
T Consensus 382 -------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~-~----~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 441 (530)
T PRK15064 382 -------ANIGYYAQDHAYDFENDLTLFDWMSQWR---Q-E----GDDEQAVRGTLGRLLFSQDDIKKSV-----KVLSG 441 (530)
T ss_pred -------eEEEEEcccccccCCCCCcHHHHHHHhc---c-C----CccHHHHHHHHHHcCCChhHhcCcc-----cccCH
Confidence 45899999863 556799999986421 1 0 11234578899999984 5556554 48999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-E
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII-Y 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~ 851 (1218)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++|||++ .+...+|++++|. +|+++ +
T Consensus 442 Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~-~g~i~~~ 516 (530)
T PRK15064 442 GEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEIT-PDGVVDF 516 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEc
Confidence 9999999999999999999999999999999999999999886 459999999975 5667899999998 58887 7
Q ss_pred EcCC
Q 000937 852 SGPL 855 (1218)
Q Consensus 852 ~g~~ 855 (1218)
.|++
T Consensus 517 ~g~~ 520 (530)
T PRK15064 517 SGTY 520 (530)
T ss_pred CCCH
Confidence 7764
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=486.74 Aligned_cols=201 Identities=21% Similarity=0.341 Sum_probs=164.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+|. +|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~~~~-~ 386 (556)
T PRK11819 324 VIEAENLSKSFG--------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD--SGTIKIGE-T 386 (556)
T ss_pred EEEEEeEEEEEC--------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECC-c
Confidence 588999998873 246999999999999999999999999999999999988764 89999854 1
Q ss_pred CccccccceEEEeccCC-CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHH
Q 000937 696 KIQETFVRVSGYCEQTD-IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgG 773 (1218)
..+||++|+. .+++.+||.||+.+...... ... .....+++++.+++.+ ..+..+ .+||||
T Consensus 387 -------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 449 (556)
T PRK11819 387 -------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGN--REIPSRAYVGRFNFKGGDQQKKV-----GVLSGG 449 (556)
T ss_pred -------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---ccc--cHHHHHHHHHhCCCChhHhcCch-----hhCCHH
Confidence 1489999986 67889999999987642211 111 1123456889999864 445554 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII-YS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~ 852 (1218)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++||+++ .+...+|+++++.++|++. +.
T Consensus 450 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~ 525 (556)
T PRK11819 450 ERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFE 525 (556)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEec
Confidence 9999999999999999999999999999999999999999873 4 8999999975 5677899999997557765 34
Q ss_pred cC
Q 000937 853 GP 854 (1218)
Q Consensus 853 g~ 854 (1218)
|+
T Consensus 526 g~ 527 (556)
T PRK11819 526 GN 527 (556)
T ss_pred CC
Confidence 43
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=486.23 Aligned_cols=201 Identities=21% Similarity=0.327 Sum_probs=163.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+| .+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG--------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGET- 384 (552)
T ss_pred EEEEeeEEEEEC--------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECCc-
Confidence 488999998873 24699999999999999999999999999999999998876 4899998541
Q ss_pred CccccccceEEEeccCC-CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHH
Q 000937 696 KIQETFVRVSGYCEQTD-IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgG 773 (1218)
..+||++|+. .+++.+||.|++.+...... .... ....+++++.+++.+ ..+..+ ..||||
T Consensus 385 -------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 447 (552)
T TIGR03719 385 -------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGG 447 (552)
T ss_pred -------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHH
Confidence 1489999986 47788999999987642211 1111 223557889999864 445554 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII-YS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~ 852 (1218)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||+++ .+...+|++++|.++|++. +.
T Consensus 448 e~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~ 523 (552)
T TIGR03719 448 ERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFE 523 (552)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeC
Confidence 9999999999999999999999999999999999999999873 3 8999999975 5667899999997556765 33
Q ss_pred cC
Q 000937 853 GP 854 (1218)
Q Consensus 853 g~ 854 (1218)
|+
T Consensus 524 g~ 525 (552)
T TIGR03719 524 GN 525 (552)
T ss_pred CC
Confidence 43
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=474.23 Aligned_cols=211 Identities=21% Similarity=0.280 Sum_probs=173.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ + ..|+++|+++++||+++|+||||||||||+++|+|..+|. +|+|.++
T Consensus 340 ~l~~~~ls~~~~--------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~--~G~I~~~--- 399 (590)
T PRK13409 340 LVEYPDLTKKLG--------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD--EGEVDPE--- 399 (590)
T ss_pred EEEEcceEEEEC--------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEe---
Confidence 478999988763 1 2489999999999999999999999999999999998774 8999885
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
..++|++|+..+.+.+||+|++.+.... .. ....++++++.+++.+..++.+ .+||||||
T Consensus 400 -------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~---~~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~ 459 (590)
T PRK13409 400 -------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG---SSYYKSEIIKPLQLERLLDKNV-----KDLSGGEL 459 (590)
T ss_pred -------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC---hHHHHHHHHHHCCCHHHHhCCc-----ccCCHHHH
Confidence 1489999998888899999999875211 11 1234678999999987777664 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcC
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 854 (1218)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||+. .+...+|+++++. |++...|.
T Consensus 460 QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~ 536 (590)
T PRK13409 460 QRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGH 536 (590)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeee
Confidence 9999999999999999999999999999999999999999775 899999999975 5667899999995 57887777
Q ss_pred CCCC---chhhhhhhhcC
Q 000937 855 LGNH---SSRVIEYFEGI 869 (1218)
Q Consensus 855 ~~~~---~~~~~~~f~~~ 869 (1218)
..+. ...+..|++.+
T Consensus 537 ~~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 537 ASGPMDMREGMNRFLKEL 554 (590)
T ss_pred cCCchhHHHHHHHHHHHc
Confidence 5432 12234455554
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=386.43 Aligned_cols=216 Identities=25% Similarity=0.405 Sum_probs=190.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++.++. ..++|+|||++|++||+++|+||||||||||||+|.++..++ +|+|.++|.+
T Consensus 2 mi~i~~l~K~fg--------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~--~G~I~i~g~~ 65 (240)
T COG1126 2 MIEIKNLSKSFG--------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD--SGSITVDGED 65 (240)
T ss_pred eEEEEeeeEEeC--------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC--CceEEECCEe
Confidence 368899998883 468999999999999999999999999999999999998874 8999999976
Q ss_pred Ccc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
... ...|+.+|+|+|+..+||++||.||+..+...- ...++++.++.+.++|+.+||.+.+|... .+||
T Consensus 66 ~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLS 138 (240)
T COG1126 66 VGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLS 138 (240)
T ss_pred ccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccC
Confidence 532 346788999999999999999999999875432 23456777788899999999998888763 5899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||||+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.||+||++.. .-+.+||++.|+ +|+++.
T Consensus 139 GGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie 216 (240)
T COG1126 139 GGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIE 216 (240)
T ss_pred cHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEE
Confidence 999999999999999999999999999999999999999999999999999999998753 456689999997 699999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|+++
T Consensus 217 ~g~p~ 221 (240)
T COG1126 217 EGPPE 221 (240)
T ss_pred ecCHH
Confidence 99763
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=464.15 Aligned_cols=198 Identities=24% Similarity=0.368 Sum_probs=162.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|..+|. +|+|.+++.
T Consensus 312 ~l~~~~l~~~y~--------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~--~G~i~~~~~- 374 (638)
T PRK10636 312 LLKMEKVSAGYG--------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV--SGEIGLAKG- 374 (638)
T ss_pred eEEEEeeEEEeC--------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCC-
Confidence 588999998873 246999999999999999999999999999999999988764 899999741
Q ss_pred CccccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCH
Q 000937 696 KIQETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLST 772 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSg 772 (1218)
..+||++|+. .+.+..|+.+++.- . . .....+.+.++++.+++.+ ..++.+ ..|||
T Consensus 375 -------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSg 433 (638)
T PRK10636 375 -------IKLGYFAQHQLEFLRADESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSG 433 (638)
T ss_pred -------EEEEEecCcchhhCCccchHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCch-----hhCCH
Confidence 2589999974 34566778776531 1 1 1122355788999999863 456554 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-E
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII-Y 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~ 851 (1218)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+...||+++++. +|+++ +
T Consensus 434 GekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~-~G~i~~~ 508 (638)
T PRK10636 434 GEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVH-DGKVEPF 508 (638)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEc
Confidence 9999999999999999999999999999999999999999987 34 9999999975 5667899999998 58887 7
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|+.+
T Consensus 509 ~g~~~ 513 (638)
T PRK10636 509 DGDLE 513 (638)
T ss_pred CCCHH
Confidence 78753
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=457.25 Aligned_cols=202 Identities=23% Similarity=0.346 Sum_probs=163.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|++|++|++++|+|||||||||||++|+|..+| .+|+|.+ |.+
T Consensus 319 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~ 381 (635)
T PRK11147 319 VFEMENVNYQID--------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTK 381 (635)
T ss_pred eEEEeeeEEEEC--------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCC
Confidence 578999998873 24699999999999999999999999999999999998776 4899998 432
Q ss_pred CccccccceEEEeccCC-CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHH
Q 000937 696 KIQETFVRVSGYCEQTD-IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgG 773 (1218)
-.+||++|+. .+++.+||.|++.+.... . ... .....+.++++.+++. +..++.+ ..||||
T Consensus 382 -------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 444 (635)
T PRK11147 382 -------LEVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGG 444 (635)
T ss_pred -------cEEEEEeCcccccCCCCCHHHHHHhhccc-c--ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHH
Confidence 1489999975 578899999999875321 0 001 1234567788888885 3455554 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE-E
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY-S 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~-~ 852 (1218)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+...+|+++++.++|++.. .
T Consensus 445 ekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~ 520 (635)
T PRK11147 445 ERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYV 520 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEcc
Confidence 999999999999999999999999999999999999999876 459999999974 56678999999963477654 4
Q ss_pred cCC
Q 000937 853 GPL 855 (1218)
Q Consensus 853 g~~ 855 (1218)
|+.
T Consensus 521 g~y 523 (635)
T PRK11147 521 GGY 523 (635)
T ss_pred CCH
Confidence 543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-45 Score=451.23 Aligned_cols=200 Identities=18% Similarity=0.299 Sum_probs=158.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ +++.+|+|+|++|++||+++|+|||||||||||++|+|..+| .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~-------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~- 571 (718)
T PLN03073 508 IISFSDASFGYP-------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK- 571 (718)
T ss_pred eEEEEeeEEEeC-------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc-
Confidence 588999999873 123699999999999999999999999999999999998876 4899998752
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGe 774 (1218)
..+||++|+. .+.+++.++.........+ .. ..+.++++++.+++.+ ..+..+ ..|||||
T Consensus 572 -------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGq 632 (718)
T PLN03073 572 -------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQPM-----YTLSGGQ 632 (718)
T ss_pred -------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcCCc-----cccCHHH
Confidence 3589999975 3445666664332111111 11 1345778899999973 445443 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE-EEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII-YSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g 853 (1218)
||||+||++|+.+|++|+|||||+|||+.++..+.+.|++. .| |||++|||+. .+...+|++++|. +|+++ +.|
T Consensus 633 kqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~-~G~i~~~~g 707 (718)
T PLN03073 633 KSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVS-EGKVTPFHG 707 (718)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCC
Confidence 99999999999999999999999999999999998888764 34 9999999975 5667899999997 58987 667
Q ss_pred CC
Q 000937 854 PL 855 (1218)
Q Consensus 854 ~~ 855 (1218)
+.
T Consensus 708 ~~ 709 (718)
T PLN03073 708 TF 709 (718)
T ss_pred CH
Confidence 64
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=405.45 Aligned_cols=431 Identities=21% Similarity=0.331 Sum_probs=326.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcccc----ceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQ----KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~~----~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|-+|||||||.|..+|. .+|+|.+||.+..-.+.+ .-++.|.||-.++|+|||.||+.+..+.+.+..
T Consensus 39 L~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g--- 115 (500)
T COG1129 39 LLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFG--- 115 (500)
T ss_pred EecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCC---
Confidence 7899999999999999994 679999999998755433 346789999999999999999988654332100
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
-+.+++ + ......+|+.+|+....|+.||+ ||+||||-|.|||++..+
T Consensus 116 ---~id~~~----------m--------------~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 116 ---LIDRKA----------M--------------RRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIARALSFD 163 (500)
T ss_pred ---ccCHHH----------H--------------HHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHHHHHhcC
Confidence 000110 0 11246679999997668998876 999999999999998886
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecCh-hhHHHHHHhC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPR-ESVLEFFESC 235 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~-~~l~~yF~~l 235 (1218)
+ +|++||||||+|+...+..+.+.++++.. +|.++|..= |...|+++.+|+|.||.+|+.|-.++. .+.-.
T Consensus 164 a-rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~IS-Hrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~----- 235 (500)
T COG1129 164 A-RVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYIS-HRLDEVFEIADRITVLRDGRVVGTRPTAAETSE----- 235 (500)
T ss_pred C-CEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEc-CcHHHHHHhcCEEEEEeCCEEeeecccccCCCH-----
Confidence 6 89999999999999999999999999975 688887754 488999999999999999999988663 21000
Q ss_pred CCCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHHH
Q 000937 236 GFRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFK 315 (1218)
Q Consensus 236 G~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~ 315 (1218)
+++ .
T Consensus 236 --------------------------------~~l-----------------v--------------------------- 239 (500)
T COG1129 236 --------------------------------DEL-----------------V--------------------------- 239 (500)
T ss_pred --------------------------------HHH-----------------H---------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhccceee
Q 000937 316 ACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFY 395 (1218)
Q Consensus 316 ~l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~~ 395 (1218)
+
T Consensus 240 ----~--------------------------------------------------------------------------- 240 (500)
T COG1129 240 ----R--------------------------------------------------------------------------- 240 (500)
T ss_pred ----H---------------------------------------------------------------------------
Confidence 0
Q ss_pred ecccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhhh
Q 000937 396 KQKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCF 475 (1218)
Q Consensus 396 re~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1218)
+|+|= ...
T Consensus 241 -------------------------------------~MvGr--------------------------------~~~--- 248 (500)
T COG1129 241 -------------------------------------LMVGR--------------------------------ELE--- 248 (500)
T ss_pred -------------------------------------HhhCc--------------------------------chh---
Confidence 00000 000
Q ss_pred hHhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHH
Q 000937 476 QLEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNF 555 (1218)
Q Consensus 476 ~~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~ 555 (1218)
..
T Consensus 249 ------------------------------------------------------------~~------------------ 250 (500)
T COG1129 249 ------------------------------------------------------------DL------------------ 250 (500)
T ss_pred ------------------------------------------------------------hh------------------
Confidence 00
Q ss_pred HHHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhh
Q 000937 556 AFALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRR 635 (1218)
Q Consensus 556 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 635 (1218)
.+. . . .. ...+..++++|++.
T Consensus 251 ----------~~~-~-~----------------~~--------------------~~~~~~l~v~~l~~----------- 271 (500)
T COG1129 251 ----------FPE-P-P----------------EE--------------------GIGEPVLEVRNLSG----------- 271 (500)
T ss_pred ----------ccc-c-c----------------cc--------------------CCCCcEEEEecCCC-----------
Confidence 000 0 0 00 00123355555442
Q ss_pred ccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEeccC
Q 000937 636 ECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQT 711 (1218)
Q Consensus 636 ~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~ 711 (1218)
...++|+||++++||+++|-|-=|||+|-|+++|.|..++ .+|+|.+||++.... ..+..++|||.|
T Consensus 272 -------~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~ED 342 (500)
T COG1129 272 -------GGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDAIKAGIAYVPED 342 (500)
T ss_pred -------CCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHHHHcCCEeCCcc
Confidence 1248899999999999999999999999999999996655 389999999985432 345579999987
Q ss_pred ---CCCCCCCCHHHHHHHHHhhccCC--CCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHh
Q 000937 712 ---DIHSPHITIEESLFFSAWLRLAP--QINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLSTEQRKRLTIGVELV 785 (1218)
Q Consensus 712 ---~~~~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGerqRv~ia~~L~ 785 (1218)
+-++..++|++|+.++...+... -.......+.+++..+.+++.-. .+.. +..||||.+|||.|||.|.
T Consensus 343 Rk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~ 417 (500)
T COG1129 343 RKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLA 417 (500)
T ss_pred cccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHh
Confidence 45788999999998873222211 23344455678888898888532 2333 3589999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 786 ANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 786 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
.+|++|+|||||.|.|.-++.+|.++|++++++|++||++|-++. |+..+|||+++|. +|+++..-+.++
T Consensus 418 ~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~-~Gri~~e~~~~~ 487 (500)
T COG1129 418 TDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMR-EGRIVGELDREE 487 (500)
T ss_pred cCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEE-CCEEEEEecccc
Confidence 999999999999999999999999999999999999999999984 8999999999998 699987655543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=371.11 Aligned_cols=231 Identities=26% Similarity=0.393 Sum_probs=200.1
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++++++++ +.+.|++|||++|++||+++|+||||+|||||||+|.|+.+|. +|+|.++|+
T Consensus 7 ~~I~vr~v~~~f--------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~--~GeI~i~G~ 70 (263)
T COG1127 7 PLIEVRGVTKSF--------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD--KGEILIDGE 70 (263)
T ss_pred ceEEEeeeeeec--------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC--CCeEEEcCc
Confidence 468999999887 3568999999999999999999999999999999999999884 899999999
Q ss_pred eCcc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCC
Q 000937 695 PKIQ------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGV 767 (1218)
Q Consensus 695 ~~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~ 767 (1218)
++.. ...++++|+++|+-.+|..+||+||+.|..+- ....+++..++.+..-++..||... .+.. +
T Consensus 71 ~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre--~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----P 143 (263)
T COG1127 71 DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE--HTKLPESLIRELVLMKLELVGLRGAAADLY-----P 143 (263)
T ss_pred chhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh--hccCCHHHHHHHHHHHHHhcCCChhhhhhC-----c
Confidence 8532 13467899999999999999999999986543 2345566677778888889999876 4544 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
.+|||||+||++||||++.||+++|+||||+||||.++..+.++++++.+. |.|++++|||.+ +++..+|+++++. +
T Consensus 144 sELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~-~ 221 (263)
T COG1127 144 SELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLA-D 221 (263)
T ss_pred hhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEe-C
Confidence 689999999999999999999999999999999999999999999999877 999999999986 7899999999998 5
Q ss_pred CEEEEEcCCCCC----chhhhhhhhcCC
Q 000937 847 GRIIYSGPLGNH----SSRVIEYFEGIP 870 (1218)
Q Consensus 847 G~~~~~g~~~~~----~~~~~~~f~~~~ 870 (1218)
|+++..|++++. ..-+.+||.+..
T Consensus 222 gkv~~~Gt~~el~~sd~P~v~qf~~G~~ 249 (263)
T COG1127 222 GKVIAEGTPEELLASDDPWVRQFFNGIR 249 (263)
T ss_pred CEEEEeCCHHHHHhCCCHHHHHHhcCCC
Confidence 999999998752 345677887653
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=371.26 Aligned_cols=215 Identities=25% Similarity=0.375 Sum_probs=193.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++|+|+++.+. ++.+++|+|++|++||+++++|||||||||+||+|.++..|+ +|+|++||+++
T Consensus 2 I~~~nvsk~y~--------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept--~G~I~i~g~~i 65 (309)
T COG1125 2 IEFENVSKRYG--------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT--SGEILIDGEDI 65 (309)
T ss_pred ceeeeeehhcC--------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC--CceEEECCeec
Confidence 57899988773 468999999999999999999999999999999999998874 99999999986
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc--cccccccCCCCCCCC
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG--IKESLVGIPGVSGLS 771 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~LS 771 (1218)
.. ...|+.+|||-|...+||++||.||+.+...+. .+++++.+++++++++.+||+. ..++. +++||
T Consensus 66 ~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLS 137 (309)
T COG1125 66 SDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELS 137 (309)
T ss_pred ccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcC
Confidence 54 356889999999999999999999999877664 3567778889999999999974 55554 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||+|||.+||||+.+|++|++|||+++|||.++.++.+.++++.++ |+|||++|||.+ |.+.+.|++.+|+ +|+++
T Consensus 138 GGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~ 215 (309)
T COG1125 138 GGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIV 215 (309)
T ss_pred cchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEE
Confidence 99999999999999999999999999999999999999999999876 999999999987 7899999999998 69999
Q ss_pred EEcCCCC
Q 000937 851 YSGPLGN 857 (1218)
Q Consensus 851 ~~g~~~~ 857 (1218)
..++|++
T Consensus 216 Q~~~P~~ 222 (309)
T COG1125 216 QYDTPDE 222 (309)
T ss_pred EeCCHHH
Confidence 9998854
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=381.23 Aligned_cols=220 Identities=23% Similarity=0.329 Sum_probs=192.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
+++++++..+... ..+...+|+|||++|++||++||+|.||||||||+|++.++..|. +|+|.+||.++
T Consensus 2 I~l~~vsK~~~~~---------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt--sG~v~v~G~di 70 (339)
T COG1135 2 IELENVSKTFGQT---------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT--SGSVFVDGQDL 70 (339)
T ss_pred eEEEeeeeeeccC---------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC--CceEEEcCEec
Confidence 6788998877532 012357999999999999999999999999999999999998874 99999999875
Q ss_pred cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQ------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. +..|+.+|+++|+..++...||.||+.|...+.. .++++.++++.++++.+||.+..+... .+|
T Consensus 71 ~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qL 142 (339)
T COG1135 71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQL 142 (339)
T ss_pred ccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhc
Confidence 32 3457889999999999999999999999887653 457788899999999999998877663 589
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
||||||||+|||||+.+|+||++|||||+|||.+.+.|+++|+++.++ |.||+++||+++ -+-+.|||+.+|. +|++
T Consensus 143 SGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~-~G~l 220 (339)
T COG1135 143 SGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLD-QGRL 220 (339)
T ss_pred CcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEee-CCEE
Confidence 999999999999999999999999999999999999999999999765 999999999874 3556789999997 6999
Q ss_pred EEEcCCCC
Q 000937 850 IYSGPLGN 857 (1218)
Q Consensus 850 ~~~g~~~~ 857 (1218)
++.|+..+
T Consensus 221 vE~G~v~~ 228 (339)
T COG1135 221 VEEGTVSE 228 (339)
T ss_pred EEeccHHH
Confidence 99998753
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=371.92 Aligned_cols=203 Identities=23% Similarity=0.384 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+.++++++.+. ...+|+|+|++|++||+++|+||||||||||||+|+|+.+|. +|+|.++|.+
T Consensus 3 ~l~i~~v~~~f~--------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~--~G~V~~~g~~ 66 (248)
T COG1116 3 LLEIEGVSKSFG--------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT--SGEVLLDGRP 66 (248)
T ss_pred eEEEEeeEEEeC--------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCcc
Confidence 467888888874 257999999999999999999999999999999999998874 8999999998
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
.. .....++||+|++.++|.+||+||+.++...+. .+++++.+++++.++.+||.+..|... ++||||||
T Consensus 67 v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMr 136 (248)
T COG1116 67 VT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMR 136 (248)
T ss_pred cC--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHH
Confidence 73 234568999999999999999999999876653 345566678999999999999998873 58999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
|||+|||||+.+|++|+||||+++||+.++..+.+.|.++.++ ++||+++|||.+ |...+.||+++|.+
T Consensus 137 QRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~ 206 (248)
T COG1116 137 QRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSN 206 (248)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecC
Confidence 9999999999999999999999999999999999999998654 899999999986 77789999999984
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=379.22 Aligned_cols=219 Identities=26% Similarity=0.422 Sum_probs=190.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|+++.|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|..+|. +|+|.++|++
T Consensus 2 ~L~~~~ls~~y~--------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~--~G~V~l~g~~ 65 (258)
T COG1120 2 MLEVENLSFGYG--------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK--SGEVLLDGKD 65 (258)
T ss_pred eeEEEEEEEEEC--------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCCc
Confidence 368899999984 468999999999999999999999999999999999988874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC-CCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+.. ....|.++||||.....+.+||+|.+.++..-.... ....++..+.++++++.+++.+.+++.+ .+||
T Consensus 66 i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LS 140 (258)
T COG1120 66 IASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELS 140 (258)
T ss_pred hhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccC
Confidence 643 346688999999998889999999998874321111 1123445567899999999999999886 4899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||||.|||||+++|++|+||||||.||...+.+++++++++++ +|+|||+++||++ -...+||++++|. +|+++
T Consensus 141 GGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk-~G~i~ 218 (258)
T COG1120 141 GGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLK-DGKIV 218 (258)
T ss_pred hhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEE
Confidence 9999999999999999999999999999999999999999999985 4999999999997 4678999999998 69999
Q ss_pred EEcCCCC
Q 000937 851 YSGPLGN 857 (1218)
Q Consensus 851 ~~g~~~~ 857 (1218)
..|++.+
T Consensus 219 a~G~p~e 225 (258)
T COG1120 219 AQGTPEE 225 (258)
T ss_pred eecCcch
Confidence 9999865
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=374.26 Aligned_cols=220 Identities=26% Similarity=0.447 Sum_probs=188.3
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.+. ++ ++|+|||+++++||+++|+||||||||||+|+|.|+.+| .+|+|.++|+
T Consensus 3 ~~i~v~nl~v~y~-------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~ 66 (254)
T COG1121 3 PMIEVENLTVSYG-------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGK 66 (254)
T ss_pred cEEEEeeeEEEEC-------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccc
Confidence 3589999999984 12 699999999999999999999999999999999998887 4899999998
Q ss_pred eCccccccceEEEeccCCCC--CCCCCHHHHHHHHHhhccCC-CCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 695 PKIQETFVRVSGYCEQTDIH--SPHITIEESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~--~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+......+..+|||||...+ -..+||+|.+..+...+... ....++.++.++++++.+|+.+..|+.+| +||
T Consensus 67 ~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LS 141 (254)
T COG1121 67 PVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELS 141 (254)
T ss_pred cccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccC
Confidence 86554445679999996432 23489999998864332210 11233446789999999999999999876 799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||+|||.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||++++|. +++++
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~ 218 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIA 218 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEe
Confidence 99999999999999999999999999999999999999999999988999999999997 6889999999995 68999
Q ss_pred EcCCCCC
Q 000937 852 SGPLGNH 858 (1218)
Q Consensus 852 ~g~~~~~ 858 (1218)
.|++++.
T Consensus 219 ~G~~~~~ 225 (254)
T COG1121 219 SGPPEEV 225 (254)
T ss_pred ccChhhc
Confidence 9998753
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=394.62 Aligned_cols=215 Identities=31% Similarity=0.473 Sum_probs=190.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+.++|++..+. .++.+|+||||++++||++||+||||||||||+|+|+|+..| .+|+|.++|.+
T Consensus 4 ~i~~~~l~k~~~-------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~ 68 (293)
T COG1131 4 VIEVRNLTKKYG-------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYD 68 (293)
T ss_pred eeeecceEEEeC-------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEe
Confidence 367788888773 136899999999999999999999999999999999999887 48999999988
Q ss_pred Ccc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 696 KIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
... ...++.+||++|++.+++.+||+|+|.|.+.++.... ....++++++++.++|.+..++++ ++||+|
T Consensus 69 ~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G 140 (293)
T COG1131 69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGG 140 (293)
T ss_pred CccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHH
Confidence 654 3567789999999999999999999999998875432 345678999999999998555554 589999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG-RTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
||||++||+||+++|+++||||||+||||.++..+.+.|++++++| +||+++||+++ ++...||+++++. +|++++.
T Consensus 141 ~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~-~G~~~~~ 218 (293)
T COG1131 141 MKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILN-DGKIIAE 218 (293)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEe-CCEEEEe
Confidence 9999999999999999999999999999999999999999999987 89999999986 7788899999998 6999999
Q ss_pred cCC
Q 000937 853 GPL 855 (1218)
Q Consensus 853 g~~ 855 (1218)
|++
T Consensus 219 g~~ 221 (293)
T COG1131 219 GTP 221 (293)
T ss_pred CCH
Confidence 976
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=361.60 Aligned_cols=223 Identities=28% Similarity=0.385 Sum_probs=190.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++..++ +++++|+|||++|++||+++|+|||||||||||++|+|+.++ .+|+|.+||.+
T Consensus 3 ~i~~~nl~k~yp-------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~~~g~~ 67 (258)
T COG3638 3 MIEVKNLSKTYP-------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP--TSGEILFNGVQ 67 (258)
T ss_pred eEEEeeeeeecC-------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC--CcceEEecccc
Confidence 578999998885 356899999999999999999999999999999999998877 48999999977
Q ss_pred Ccc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-----CCCChhhHHHHHHHHHHHcCCCccccccccC
Q 000937 696 KIQ------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-----PQINSKTKADCVNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 696 ~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 764 (1218)
+.. +.+++.+||++|+..+.+.++|.+|+..+..-+.+ -....++.+..+-+.++.+|+.+.+-.+.+
T Consensus 68 i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~- 146 (258)
T COG3638 68 ITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS- 146 (258)
T ss_pred hhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-
Confidence 532 24578899999999999999999999876432211 112334555667788999999988777654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+|||||+|||+|||+|+.+|++++.|||+++|||.+++++++.|+++.++ |.|||++.||.+. ..++|||++-|
T Consensus 147 ----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl 221 (258)
T COG3638 147 ----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGL 221 (258)
T ss_pred ----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEe
Confidence 79999999999999999999999999999999999999999999999754 9999999999864 56789999999
Q ss_pred ecCCEEEEEcCCCCCch
Q 000937 844 KTGGRIIYSGPLGNHSS 860 (1218)
Q Consensus 844 ~~~G~~~~~g~~~~~~~ 860 (1218)
+ +|+++|+||+++..+
T Consensus 222 ~-~G~ivfDg~~~el~~ 237 (258)
T COG3638 222 K-AGRIVFDGPASELTD 237 (258)
T ss_pred c-CCcEEEeCChhhhhH
Confidence 8 699999999976443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=365.26 Aligned_cols=209 Identities=27% Similarity=0.419 Sum_probs=177.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++.+|++..+.... ...++|+++|++|++||+++|+|||||||||||++|.|+..| ++|.|.++|.+.
T Consensus 2 i~~~~v~k~y~~~~----------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~ 69 (226)
T COG1136 2 IELKNVSKIYGLGG----------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDL 69 (226)
T ss_pred cEEeeeEEEeccCC----------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEc
Confidence 35778887764321 225799999999999999999999999999999999999887 489999999875
Q ss_pred cc------cc-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcccc-ccccCCCCC
Q 000937 697 IQ------ET-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE-SLVGIPGVS 768 (1218)
Q Consensus 697 ~~------~~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~ 768 (1218)
.. .. .++.+|||+|+..+.|++||.||+.++..+... .....+++++++++.+||.+..+ +. +.
T Consensus 70 ~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~ 141 (226)
T COG1136 70 TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PS 141 (226)
T ss_pred CcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----ch
Confidence 42 12 245799999999999999999999987755432 12245677889999999986665 44 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+|||||||||+|||||+.+|++++.||||.+||+.++..|++++++++++ |+|||++|||+ ++...+||++.+. +|
T Consensus 142 eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~-dG 218 (226)
T COG1136 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELK-DG 218 (226)
T ss_pred hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEe-CC
Confidence 89999999999999999999999999999999999999999999999866 99999999986 6789999999998 57
Q ss_pred E
Q 000937 848 R 848 (1218)
Q Consensus 848 ~ 848 (1218)
+
T Consensus 219 ~ 219 (226)
T COG1136 219 K 219 (226)
T ss_pred e
Confidence 7
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=350.19 Aligned_cols=203 Identities=27% Similarity=0.417 Sum_probs=185.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc--ccccceEEEeccCCCCCCCCCH
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ--ETFVRVSGYCEQTDIHSPHITI 720 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv 720 (1218)
.++++||||+++.||+++|+|||||||||+|++|+++..|+ +|.|++||.+..+ ...++.+|.++.+..++..||+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~--~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC--CceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 46899999999999999999999999999999999998874 8999999998543 3467889999988899999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000937 721 EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgL 800 (1218)
+|||.|.+++.. ....+.+++.+++.+.++|.++.|+.+| ++|.||||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 999999988763 4456677889999999999999999986 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 801 DARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 801 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
|..+...+.+.+++++++|++||++||.+. |+..+||+++++. .|++++.|++++
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh-~Gevv~~gs~~~ 219 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLH-KGEVVLEGSIEA 219 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEe-cCcEEEcCCHHH
Confidence 999999999999999999999999999985 7778999999998 599999998753
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=386.09 Aligned_cols=216 Identities=26% Similarity=0.411 Sum_probs=195.6
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++..+.. ..+|+|+|++|++||+++|+||||||||||||+|||+.+++ +|+|.++|.+
T Consensus 3 ~i~l~~v~K~yg~--------------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~--~G~I~i~g~~ 66 (338)
T COG3839 3 ELELKNVRKSFGS--------------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT--SGEILIDGRD 66 (338)
T ss_pred EEEEeeeEEEcCC--------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEE
Confidence 5788999988741 12999999999999999999999999999999999999874 8999999999
Q ss_pred Ccc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 696 KIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
++. ...+|.+++|+|+..++|+|||+||+.|+.+.+. ..+++.+++++++.+.|+|.+..|++. ++|||||
T Consensus 67 vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQ 138 (338)
T COG3839 67 VTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQ 138 (338)
T ss_pred CCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhh
Confidence 765 4456889999999999999999999999987653 346677889999999999999999874 5899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||+|||||+++|++++||||+|+||...+..+...|+++.++ |.|+|++|||.. |...++|++++|. +|++...|
T Consensus 139 rQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g 216 (338)
T COG3839 139 RQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVG 216 (338)
T ss_pred HHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecC
Confidence 99999999999999999999999999999999999999999876 999999999974 8889999999998 69999999
Q ss_pred CCCC
Q 000937 854 PLGN 857 (1218)
Q Consensus 854 ~~~~ 857 (1218)
++.+
T Consensus 217 ~p~e 220 (338)
T COG3839 217 TPLE 220 (338)
T ss_pred ChHH
Confidence 9865
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=369.07 Aligned_cols=206 Identities=30% Similarity=0.497 Sum_probs=184.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE---eCcc-ccccceEEEeccCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY---PKIQ-ETFVRVSGYCEQTDIHSPH 717 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~q~~~~~~~ 717 (1218)
...+++|||++|+.||++||+|||||||||||++|+|+..|+ .|.|.+||+ +.++ ....|.+|||+|+..+|++
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~--~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC--CceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 357899999999999999999999999999999999999884 899999999 5443 2345789999999999999
Q ss_pred CCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000937 718 ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPT 797 (1218)
Q Consensus 718 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPt 797 (1218)
|||.||+.|+...+. ...+..+.+.+++++++.+.|+++.+.. +.+|||||||||++||||+.+|++|+||||+
T Consensus 92 mtVa~NIAFGl~~~~-~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVRK-ERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhcccccc-cCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 999999999987762 2233556678899999999999998876 3589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 798 TGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 798 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
++||...+.++.+-|+++.++ |.|++++|||+. |..+.+|++++|. +|+|...|++++
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~-~G~Ieqvg~p~e 224 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLN-QGRIEQVGPPDE 224 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEec-CCeeeeeCCHHH
Confidence 999999999999999999877 999999999986 8999999999998 599999999865
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=386.08 Aligned_cols=218 Identities=26% Similarity=0.435 Sum_probs=195.4
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++..+. ...+++|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|+
T Consensus 4 ~~l~i~~v~k~yg--------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~--~G~I~l~G~ 67 (352)
T COG3842 4 PALEIRNVSKSFG--------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS--SGEILLDGE 67 (352)
T ss_pred ceEEEEeeeeecC--------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCE
Confidence 4588999998873 468999999999999999999999999999999999999884 899999999
Q ss_pred eCcc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 695 PKIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 695 ~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
++.. ...+|.+|+|+|+-.+||+|||+||+.|+.+++ ....+++.+++++++++.++|.+..++.. .+||||
T Consensus 68 ~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGG 140 (352)
T COG3842 68 DITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGG 140 (352)
T ss_pred ECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChH
Confidence 9765 345788999999999999999999999998743 22334567789999999999999888774 589999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||+|||||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++|||.. |.+.+.|++++|. +|++...
T Consensus 141 QqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~-~G~I~Q~ 218 (352)
T COG3842 141 QQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMN-DGRIEQV 218 (352)
T ss_pred HHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEcc-CCceeec
Confidence 999999999999999999999999999999999999999999765 999999999975 7889999999998 6999999
Q ss_pred cCCCC
Q 000937 853 GPLGN 857 (1218)
Q Consensus 853 g~~~~ 857 (1218)
|++++
T Consensus 219 gtP~e 223 (352)
T COG3842 219 GTPEE 223 (352)
T ss_pred CCHHH
Confidence 99864
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=337.19 Aligned_cols=212 Identities=25% Similarity=0.362 Sum_probs=183.7
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++|+|++..|+ ..+++|+|||++|++||++-|+||||||||||||+|.+...| ++|+|.+||.++
T Consensus 2 I~f~~V~k~Y~-------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl 66 (223)
T COG2884 2 IRFENVSKAYP-------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDL 66 (223)
T ss_pred eeehhhhhhcC-------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeec
Confidence 57888887774 236799999999999999999999999999999999998877 489999999986
Q ss_pred cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQ------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. ...+|.+|.|+||..++++.||.||+.|+..... .+..+.++++.++++..||.+..+.. +.+|
T Consensus 67 ~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~L 138 (223)
T COG2884 67 SRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQL 138 (223)
T ss_pred ccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----cccc
Confidence 43 1357889999999999999999999999876543 34566778899999999999887766 3589
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhc-eEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFD-ELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d-~~~~l~~~G~~ 849 (1218)
||||||||+||||++.+|++|+.||||.+|||..+.+|++++.++.+.|.||+++|||. ++.+... +++.+. +|++
T Consensus 139 SGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l~-~Grl 215 (223)
T COG2884 139 SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLALE-DGRL 215 (223)
T ss_pred CchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEEe-CCEE
Confidence 99999999999999999999999999999999999999999999998999999999974 5666665 555565 7999
Q ss_pred EEEcC
Q 000937 850 IYSGP 854 (1218)
Q Consensus 850 ~~~g~ 854 (1218)
+....
T Consensus 216 ~~d~~ 220 (223)
T COG2884 216 VRDES 220 (223)
T ss_pred Eeccc
Confidence 87654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=390.33 Aligned_cols=191 Identities=26% Similarity=0.352 Sum_probs=154.0
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
+..++++|+++.++ +++.+++++|+.+++|+.+||+||||+|||||||+|+|...+. +|+|.+.-
T Consensus 319 ~~vl~~~~~~~~y~-------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~--~G~v~~g~ 383 (530)
T COG0488 319 KLVLEFENVSKGYD-------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL--SGTVKVGE 383 (530)
T ss_pred CeeEEEeccccccC-------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC--CceEEeCC
Confidence 45689999998874 2357999999999999999999999999999999999977663 89997743
Q ss_pred EeCccccccceEEEeccCC-CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCC
Q 000937 694 YPKIQETFVRVSGYCEQTD-IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLS 771 (1218)
Q Consensus 694 ~~~~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LS 771 (1218)
. -.+||..|+. .+.++.|+.|++.-.. +. .....+...+..+++..- ..+. ++.||
T Consensus 384 ~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~----~~e~~~r~~L~~f~F~~~~~~~~-----v~~LS 441 (530)
T COG0488 384 T--------VKIGYFDQHRDELDPDKTVLEELSEGF-----PD----GDEQEVRAYLGRFGFTGEDQEKP-----VGVLS 441 (530)
T ss_pred c--------eEEEEEEehhhhcCccCcHHHHHHhhC-----cc----ccHHHHHHHHHHcCCChHHHhCc-----hhhcC
Confidence 1 2489999986 3457889999885421 11 114557788999988743 2344 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
||||.|+.+|+.++.+|.+|+|||||+.||..+...+.+.|... .-|||++|||.. -+-..+++++.+.+
T Consensus 442 GGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~ 511 (530)
T COG0488 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED 511 (530)
T ss_pred HhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC
Confidence 99999999999999999999999999999999999999999875 459999999964 35556788888863
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=340.51 Aligned_cols=219 Identities=26% Similarity=0.334 Sum_probs=185.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---CCceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT---SGCFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~---~~~~~G~i~~ 691 (1218)
..++.+||++.+. .+++|+|||+.|++++++|++|||||||||||+++....+ .-..+|+|.+
T Consensus 6 ~~~~~~~l~~yYg--------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~ 71 (253)
T COG1117 6 PAIEVRDLNLYYG--------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLL 71 (253)
T ss_pred ceeEecceeEEEC--------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEE
Confidence 4578899999884 4689999999999999999999999999999999998543 2357899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
+|+++.. ...|+.+|.|+|.+..|| +|++||+.|+.++.... .++.++.++..++...|. ++.|++-.++
T Consensus 72 ~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~---~~~ldeiVe~sLk~AaLWdEVKDrL~~sa 147 (253)
T COG1117 72 DGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK---DKELDEIVESSLKKAALWDEVKDRLHKSA 147 (253)
T ss_pred CCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc---hHHHHHHHHHHHHHhHhHHHhHHHhhCCc
Confidence 9998643 246788999999999999 99999999998765432 255677888888888875 4555553332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
.+|||||+||++|||+|+.+|+||+||||||+|||.+..+|-+++.+|+ +.-|||++||.+. ...+..|+...+.
T Consensus 148 --~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~- 222 (253)
T COG1117 148 --LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFY- 222 (253)
T ss_pred --cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhc-
Confidence 4799999999999999999999999999999999999999999999997 4689999999875 5667789988887
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
.|+++++|+.+
T Consensus 223 ~G~LvE~g~T~ 233 (253)
T COG1117 223 LGELVEFGPTD 233 (253)
T ss_pred ccEEEEEcCHH
Confidence 59999999864
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=363.14 Aligned_cols=437 Identities=19% Similarity=0.299 Sum_probs=334.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|+|.+|||||||.+...|. .+|+|.+||.+++-.+. +.-+|.|-||..++|++||.||+..+.+-....
T Consensus 35 LLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~---- 110 (501)
T COG3845 35 LLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG---- 110 (501)
T ss_pred EeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccccc----
Confidence 7899999999999999994 57999999999885443 335789999999999999999999976532100
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
.+.+++. ...++.+.+..||+---|-+|++ ||-||||||-|-++|..+
T Consensus 111 ---~~~~~~~------------------------~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 111 ---LIDRRQA------------------------RARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEILKALYRG 158 (501)
T ss_pred ---ccCHHHH------------------------HHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHHHHHhcC
Confidence 0011111 11357788899999999999886 999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHhCC
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFESCG 236 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~lG 236 (1218)
+ ++|+||||||-|-+..+.+++++|+++++ .|+|||..-| --.|+.+.+|++.||.+||++-.-++.
T Consensus 159 a-~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITH-KL~Ev~~iaDrvTVLR~Gkvvgt~~~~---------- 225 (501)
T COG3845 159 A-RLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITH-KLKEVMAIADRVTVLRRGKVVGTVDPV---------- 225 (501)
T ss_pred C-CEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEec-cHHHHHHhhCeeEEEeCCeEEeeecCC----------
Confidence 7 89999999999999999999999999986 6888887655 677999999999999999985442210
Q ss_pred CCCCCCCCcCChhhhhhhhhcCCCCCCcCCHHHHHHHHhcChhhhhHHHHHHHhhhhcccccCccccccccccHHHHHHH
Q 000937 237 FRCPDRKAVISRKDQAQYWFHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLSRWELFKA 316 (1218)
Q Consensus 237 ~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 316 (1218)
.. .+.+++++
T Consensus 226 ----~~----------------------~t~~ela~-------------------------------------------- 235 (501)
T COG3845 226 ----AE----------------------TTEEELAE-------------------------------------------- 235 (501)
T ss_pred ----CC----------------------CCHHHHHH--------------------------------------------
Confidence 00 00000000
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhHHHHHHHHHHHHhhhcchhhhhhccceeee
Q 000937 317 CMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHANYFMGSLFYTLVILIVDGISEIPMSLERLAVFYK 396 (1218)
Q Consensus 317 l~~R~~~~~~r~~~~~~~~~~~~li~~l~~g~~f~~~~~~~~~~~~~~~~g~~f~~i~~~~~~~~~~~~~~~~~r~v~~r 396 (1218)
+
T Consensus 236 l------------------------------------------------------------------------------- 236 (501)
T COG3845 236 L------------------------------------------------------------------------------- 236 (501)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cccCCCcchHHHHHHHHHHHhhHHHHHHhHhhheeeccccccchHhhHHHHHHHHHHHHHhhhHHHHHHhcccchhhhhh
Q 000937 397 QKEMCLYPAWAYVIPATILKVPLSLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCFQ 476 (1218)
Q Consensus 397 e~~~~~y~~~~y~la~~l~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1218)
|+
T Consensus 237 -------------------------------------Mv----------------------------------------- 238 (501)
T COG3845 237 -------------------------------------MV----------------------------------------- 238 (501)
T ss_pred -------------------------------------hc-----------------------------------------
Confidence 00
Q ss_pred HhhhhhhhHHHHHHhhhccceecCCcchhhhhhcccccccCCCcccHHHhhhccCcccCCcchhHHHHHHHHHHHHHHHH
Q 000937 477 LEVLQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGLNFDEYFFWISLGALFGLALVFNFA 556 (1218)
Q Consensus 477 ~~a~~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~l~~~~i~f~~~ 556 (1218)
|.++.
T Consensus 239 ----------------------------------------------G~~v~----------------------------- 243 (501)
T COG3845 239 ----------------------------------------------GREVV----------------------------- 243 (501)
T ss_pred ----------------------------------------------CCccc-----------------------------
Confidence 00000
Q ss_pred HHHHHhccCCCCCCCcccccCCcccccccCCCCCCCccccccCCCCCCCCCcccCCCceEEEEEeEEEEEecCchhhhhc
Q 000937 557 FALALSFLKPPGSSPAMISHGKFSGIQRSKGSCDDEHVEDVDMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRE 636 (1218)
Q Consensus 557 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 636 (1218)
... ... ... | .+..++++||+..-+.
T Consensus 244 --------------~~~---------------~~~----------~~~------p-g~~vL~V~~L~v~~~~-------- 269 (501)
T COG3845 244 --------------LRV---------------VKP----------PST------P-GEVVLEVEDLSVKDRR-------- 269 (501)
T ss_pred --------------ccc---------------ccC----------CCC------C-CCeEEEEeeeEeecCC--------
Confidence 000 000 000 0 1346788888865421
Q ss_pred cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC----cccc-ccceEEEeccC
Q 000937 637 CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK----IQET-FVRVSGYCEQT 711 (1218)
Q Consensus 637 ~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~----~~~~-~~~~~~~v~q~ 711 (1218)
....+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|++. +... .+..++|||.+
T Consensus 270 -----~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~--~G~I~l~G~~v~~~~~~~~~r~~G~~~VPed 342 (501)
T COG3845 270 -----GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA--SGRILLNGKDVLGRLSPRERRRLGLAYVPED 342 (501)
T ss_pred -----CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC--CceEEECCEeccccCCHHHHHhcCCccCChh
Confidence 246799999999999999999999999999999999988663 69999999986 2222 33568999997
Q ss_pred C---CCCCCCCHHHHHHHHHhhccC----CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000937 712 D---IHSPHITIEESLFFSAWLRLA----PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVEL 784 (1218)
Q Consensus 712 ~---~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L 784 (1218)
. -+.+.+|+.||+.+...-+.+ .-....+..+..+++++.++........ ..+.||||++||+-+||+|
T Consensus 343 R~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl 418 (501)
T COG3845 343 RHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILAREL 418 (501)
T ss_pred hccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc----chhhcCCcceehhhhhhhh
Confidence 5 356899999999876542211 1123455667788999999886322111 1468999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCC
Q 000937 785 VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNH 858 (1218)
Q Consensus 785 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 858 (1218)
..+|++|+..+||.|||..+.+.|.+.|.+++++|+.|++++-+++ |+++++|++.+|. +|+++...++++.
T Consensus 419 ~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~-~Gri~~~~~~~~~ 490 (501)
T COG3845 419 ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIY-EGRIVGIVPPEEA 490 (501)
T ss_pred ccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeee-CCceecccccccC
Confidence 9999999999999999999999999999999999999999999997 8999999999998 5999988887653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=376.84 Aligned_cols=216 Identities=26% Similarity=0.391 Sum_probs=188.5
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|+.+|. +|+|.++|.
T Consensus 6 ~~i~i~~l~k~~~--------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~--~G~v~i~G~ 69 (306)
T PRK13537 6 APIDFRNVEKRYG--------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGE 69 (306)
T ss_pred ceEEEEeEEEEEC--------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCE
Confidence 3588999999883 247999999999999999999999999999999999998874 899999999
Q ss_pred eCcc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 695 PKIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 695 ~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
+... ...++.+||++|++.+++.+||+||+.|.+.++. ....+..++++++++.+++.+..++.+ ++|||
T Consensus 70 ~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 141 (306)
T PRK13537 70 PVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSG 141 (306)
T ss_pred ecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCH
Confidence 8643 2345779999999999999999999998665431 223334556788999999988888775 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|++++.
T Consensus 142 G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~-~G~i~~~ 219 (306)
T PRK13537 142 GMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIE-EGRKIAE 219 (306)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999878999999999986 6778899999998 5999999
Q ss_pred cCCC
Q 000937 853 GPLG 856 (1218)
Q Consensus 853 g~~~ 856 (1218)
|+++
T Consensus 220 g~~~ 223 (306)
T PRK13537 220 GAPH 223 (306)
T ss_pred CCHH
Confidence 9864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=326.85 Aligned_cols=197 Identities=28% Similarity=0.395 Sum_probs=174.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-ccccceEEEeccCCCCCCCCCHHHHHHH
Q 000937 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-ETFVRVSGYCEQTDIHSPHITIEESLFF 726 (1218)
Q Consensus 648 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 726 (1218)
..+++|++||++||+||||||||||||+|+|...|. +|+|.+||++... ....|-++.++|+..+|.++||.+|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~--~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC--CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 467889999999999999999999999999998874 8999999998654 3456778999999999999999999988
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000937 727 SAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAA 806 (1218)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~ 806 (1218)
+..-. -.-..+.+++++.++...||.++.+++.+ +|||||||||++||+|+++-+|++||||+|+|||.-+.
T Consensus 95 Gl~P~---LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPG---LKLNAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCcc---cccCHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 64321 11234566789999999999999988854 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 807 IVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 807 ~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
++..++.+++++ +.|++++||+|+ +.....|++++++ +||+.++|+.+
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~-~Gri~~~g~~~ 215 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLD-NGRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEe-CCEEEeeccHH
Confidence 999999999865 899999999997 7889999999998 59999999863
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=339.16 Aligned_cols=206 Identities=23% Similarity=0.396 Sum_probs=183.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcccc----ccceEEEeccCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQET----FVRVSGYCEQTDIHSPH 717 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ 717 (1218)
++++++|||+++++||+++|+|||||||||.+.++.|+.+++ +|+|.+||.+++... .+..+||+||+...|..
T Consensus 16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d--~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~ 93 (243)
T COG1137 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD--SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK 93 (243)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC--CceEEECCcccccCChHHHhhcCcccccccchHhhc
Confidence 568999999999999999999999999999999999998885 899999999876532 23458999999999999
Q ss_pred CCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000937 718 ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPT 797 (1218)
Q Consensus 718 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPt 797 (1218)
+||+||+.-....+.. +....+++++.+++++.+++.++++.+- ..||||||||+.|||||+.+|+.++||||+
T Consensus 94 LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEPF 167 (243)
T COG1137 94 LTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEPF 167 (243)
T ss_pred CcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999999877665531 1223455667889999999999998874 379999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 798 TGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 798 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
+|.||.+..+|.++++.|+++|..|++|-|+.. |....|||.+++. +|++.++|++++
T Consensus 168 AGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~-~G~vla~G~p~e 225 (243)
T COG1137 168 AGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIIS-DGKVLAEGSPEE 225 (243)
T ss_pred cCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEe-cCeEEecCCHHH
Confidence 999999999999999999999999999999986 7899999999998 599999999864
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=401.33 Aligned_cols=218 Identities=23% Similarity=0.347 Sum_probs=188.5
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
...++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|
T Consensus 926 ~~~L~I~nLsK~y~~------------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt--sG~I~i~G 991 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP------------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT--SGTVLVGG 991 (2272)
T ss_pred CceEEEEeEEEEecC------------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC--ceEEEECC
Confidence 357899999998841 1357999999999999999999999999999999999998774 89999999
Q ss_pred EeCcc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 694 YPKIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 694 ~~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+++.. ...++.+||++|++.+++.+||+||+.+.++++. ...++.+++++++++.+||.+..++.+ ++||
T Consensus 992 ~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LS 1063 (2272)
T TIGR01257 992 KDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLS 1063 (2272)
T ss_pred EECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 98643 2345679999999999999999999999876542 223344567889999999988877765 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||||+||+||+.+|++++|||||+|||+.+++.++++|++++ +|+|||++||+++ ++...+|++++|. +|+++.
T Consensus 1064 GGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~-~GkL~~ 1140 (2272)
T TIGR01257 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIIS-QGRLYC 1140 (2272)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 999999999999999999999999999999999999999999995 5999999999985 5667899999998 599999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|++.
T Consensus 1141 ~Gs~~ 1145 (2272)
T TIGR01257 1141 SGTPL 1145 (2272)
T ss_pred ecCHH
Confidence 99864
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=373.80 Aligned_cols=218 Identities=22% Similarity=0.301 Sum_probs=187.2
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.. ++.+++|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 2 I~~~~lsk~y~~~----------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~--~G~I~i~G~~i 69 (343)
T TIGR02314 2 IKLSNITKVFHQG----------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--SGSVIVDGQDL 69 (343)
T ss_pred EEEEEEEEEECCC----------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEC
Confidence 6789999988421 11247999999999999999999999999999999999998874 89999999986
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
... ..++.+||++|+..+++.+||+||+.+..... .....+..+++.++++.+||.+..|... .+|
T Consensus 70 ~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~L 141 (343)
T TIGR02314 70 TTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNL 141 (343)
T ss_pred CcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 431 23567999999999999999999999876432 1234455667889999999988877664 489
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
||||||||+|||||+.+|++|+|||||++||+.++..++++|++++++ |.|||++||+++ .+.+.||++++|. +|++
T Consensus 142 SgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~i 219 (343)
T TIGR02314 142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGEL 219 (343)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999875 999999999975 5667899999997 6999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
+..|++.
T Consensus 220 v~~g~~~ 226 (343)
T TIGR02314 220 IEQGTVS 226 (343)
T ss_pred EEEcCHH
Confidence 9999864
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=377.67 Aligned_cols=217 Identities=24% Similarity=0.359 Sum_probs=189.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|++
T Consensus 3 ~l~i~~l~~~~~-------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~ 67 (356)
T PRK11650 3 GLKLQAVRKSYD-------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRV 67 (356)
T ss_pred EEEEEeEEEEeC-------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEE
Confidence 378899998873 124699999999999999999999999999999999999887 48999999998
Q ss_pred Ccc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 696 KIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
+.. ...++.+|||+|+..++|++||+||+.|+...+ .....+..++++++++.++|.+..++.. ++|||||
T Consensus 68 i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 139 (356)
T PRK11650 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQ 139 (356)
T ss_pred CCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHH
Confidence 643 223477999999999999999999999986532 1234445567899999999998887764 4899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|++|||++ ++.+++|++++|. +|+++..|
T Consensus 140 ~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g 217 (356)
T PRK11650 140 RQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIG 217 (356)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEEC
Confidence 99999999999999999999999999999999999999999876 999999999985 6888999999997 69999999
Q ss_pred CCCC
Q 000937 854 PLGN 857 (1218)
Q Consensus 854 ~~~~ 857 (1218)
++++
T Consensus 218 ~~~~ 221 (356)
T PRK11650 218 TPVE 221 (356)
T ss_pred CHHH
Confidence 8753
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=376.29 Aligned_cols=216 Identities=23% Similarity=0.388 Sum_probs=190.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|. +|+|.++|++
T Consensus 4 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~--~G~I~i~g~~ 67 (353)
T TIGR03265 4 YLSIDNIRKRFG--------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT--AGTIYQGGRD 67 (353)
T ss_pred EEEEEEEEEEeC--------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC--ceEEEECCEE
Confidence 478999998873 246899999999999999999999999999999999998874 8999999998
Q ss_pred Ccc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 696 KIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
... ...+|.+|||+|+..++|++||+||+.|+...+ .....+..++++++++.++|.+..++.. ++|||||
T Consensus 68 ~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq 139 (353)
T TIGR03265 68 ITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQ 139 (353)
T ss_pred CCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHH
Confidence 643 234577999999999999999999999986533 1234455678899999999998888764 5899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||+|||||+.+|++++|||||++||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|
T Consensus 140 ~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~-~G~i~~~g 217 (353)
T TIGR03265 140 QQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMN-HGVIEQVG 217 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999765 999999999985 6788999999998 59999999
Q ss_pred CCCC
Q 000937 854 PLGN 857 (1218)
Q Consensus 854 ~~~~ 857 (1218)
++++
T Consensus 218 ~~~~ 221 (353)
T TIGR03265 218 TPQE 221 (353)
T ss_pred CHHH
Confidence 8753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=359.23 Aligned_cols=213 Identities=24% Similarity=0.376 Sum_probs=181.1
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|..+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (235)
T cd03261 2 ELRGLTKSFG--------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDIS 65 (235)
T ss_pred eEEEEEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 5788888773 24699999999999999999999999999999999999876 4899999998753
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 698 Q------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 698 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
. ...++.++|++|++.+++.+||+||+.+...... .....+..++++++++.+++.+..++.+ .+||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 2 1245679999999999999999999988643221 1223344566788999999987766654 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~-~G~i~ 216 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLY-DGKIV 216 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEE-CCeEE
Confidence 99999999999999999999999999999999999999999999874 899999999985 5677899999997 59999
Q ss_pred EEcCC
Q 000937 851 YSGPL 855 (1218)
Q Consensus 851 ~~g~~ 855 (1218)
+.|++
T Consensus 217 ~~g~~ 221 (235)
T cd03261 217 AEGTP 221 (235)
T ss_pred EecCH
Confidence 99875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=374.71 Aligned_cols=216 Identities=22% Similarity=0.407 Sum_probs=190.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++
T Consensus 6 ~l~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~~~g~~ 69 (351)
T PRK11432 6 FVVLKNITKRFG--------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT--EGQIFIDGED 69 (351)
T ss_pred EEEEEeEEEEEC--------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC--ceEEEECCEE
Confidence 578999999873 246899999999999999999999999999999999998874 8999999998
Q ss_pred Cccc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 696 KIQE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
+... ..++.+|||+|+..++|++||+||+.|+...+. ....+..++++++++.+++.+..++.. .+|||||
T Consensus 70 i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq 141 (351)
T PRK11432 70 VTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQ 141 (351)
T ss_pred CCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHH
Confidence 6532 235779999999999999999999999865432 234455678899999999998877664 5899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||+|||||+.+|++|+|||||+|||+..+..+.+.|+++.++ |+|+|++|||++ ++..++|++++|. +|+++..|
T Consensus 142 ~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~-~G~i~~~g 219 (351)
T PRK11432 142 QQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMN-KGKIMQIG 219 (351)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999765 999999999985 6788999999998 59999999
Q ss_pred CCCC
Q 000937 854 PLGN 857 (1218)
Q Consensus 854 ~~~~ 857 (1218)
++++
T Consensus 220 ~~~~ 223 (351)
T PRK11432 220 SPQE 223 (351)
T ss_pred CHHH
Confidence 8753
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=375.36 Aligned_cols=216 Identities=25% Similarity=0.384 Sum_probs=189.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCcee--eEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFK--GEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~--G~i~~~g 693 (1218)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|. + |+|.++|
T Consensus 5 ~l~~~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~~~G~i~~~g 68 (362)
T TIGR03258 5 GIRIDHLRVAYG--------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA--GLTGRIAIAD 68 (362)
T ss_pred EEEEEEEEEEEC--------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCCEEEEECC
Confidence 478999999883 246999999999999999999999999999999999998874 7 9999999
Q ss_pred EeCcc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 694 YPKIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 694 ~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
++... ...++.++||+|+..++|++||+||+.|+...+ .....+.+++++++++.++|.+..++.+ ++|||
T Consensus 69 ~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSg 140 (362)
T TIGR03258 69 RDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSG 140 (362)
T ss_pred EECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCH
Confidence 98643 223567999999999999999999999986543 1234455667899999999998888774 48999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT--GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||+|||||+.+|++|+|||||+|||+..+..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++
T Consensus 141 Gq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~-~G~i~ 218 (362)
T TIGR03258 141 GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMK-DGRLA 218 (362)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 9999999999999999999999999999999999999999999876 799999999985 6788999999998 59999
Q ss_pred EEcCCCC
Q 000937 851 YSGPLGN 857 (1218)
Q Consensus 851 ~~g~~~~ 857 (1218)
..|++++
T Consensus 219 ~~g~~~~ 225 (362)
T TIGR03258 219 AHGEPQA 225 (362)
T ss_pred EEcCHHH
Confidence 9998753
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=370.72 Aligned_cols=216 Identities=25% Similarity=0.376 Sum_probs=188.1
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|+.+|. +|+|.++|.
T Consensus 40 ~~i~i~nl~k~y~--------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~--~G~i~i~G~ 103 (340)
T PRK13536 40 VAIDLAGVSKSYG--------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGV 103 (340)
T ss_pred eeEEEEEEEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--ceEEEECCE
Confidence 4689999999883 346999999999999999999999999999999999998874 899999999
Q ss_pred eCcc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 695 PKIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 695 ~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
+... ...++.+||++|+..+++.+||.||+.+....+. ....+..++++++++.++|.+..++.++ +|||
T Consensus 104 ~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~ 175 (340)
T PRK13536 104 PVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSG 175 (340)
T ss_pred ECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCH
Confidence 8643 2345679999999999999999999987654431 1223344567788999999988887754 7999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|++++.
T Consensus 176 G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~-~G~i~~~ 253 (340)
T PRK13536 176 GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-AGRKIAE 253 (340)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 9999999999999999999999999999999999999999999878999999999985 6778899999998 5999999
Q ss_pred cCCC
Q 000937 853 GPLG 856 (1218)
Q Consensus 853 g~~~ 856 (1218)
|+++
T Consensus 254 g~~~ 257 (340)
T PRK13536 254 GRPH 257 (340)
T ss_pred cCHH
Confidence 9874
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=337.77 Aligned_cols=217 Identities=23% Similarity=0.355 Sum_probs=181.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|++..++... ...++|+|||+++.+||+++|+|+||||||||.++|+|+.+|. +|+|.++|++
T Consensus 3 ~l~v~nl~~~y~~~~----------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~--~G~I~~~G~~ 70 (252)
T COG1124 3 LLSVRNLSIVYGGGK----------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS--SGSILLDGKP 70 (252)
T ss_pred eEEEeceEEEecCCc----------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC--CceEEECCcc
Confidence 478899999885321 1236999999999999999999999999999999999998874 8999999987
Q ss_pred Cccc----cccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCC
Q 000937 696 KIQE----TFVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~~----~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~ 768 (1218)
.... .+.+.+-+|+|++. +.|..||++.|.-+... .... +.++++.++++.+||.. ..++. +.
T Consensus 71 ~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~--~~~~~i~~~L~~VgL~~~~l~R~-----P~ 140 (252)
T COG1124 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLS--KSQQRIAELLDQVGLPPSFLDRR-----PH 140 (252)
T ss_pred cCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCcc--HHHHHHHHHHHHcCCCHHHHhcC-----ch
Confidence 5432 35678999999974 78999999998766433 1122 23344889999999974 33433 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+||||||||++|||||+.+|++|+||||||+||+..+.+|+++|.+++++ |.|.|+++||.+ -+..+|||+++|+ +|
T Consensus 141 eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~-~G 218 (252)
T COG1124 141 ELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMD-NG 218 (252)
T ss_pred hcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeee-CC
Confidence 89999999999999999999999999999999999999999999999866 889999999986 4677899999998 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
++++.++.+
T Consensus 219 ~ivE~~~~~ 227 (252)
T COG1124 219 QIVEIGPTE 227 (252)
T ss_pred eEEEeechh
Confidence 999999864
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=350.63 Aligned_cols=215 Identities=25% Similarity=0.380 Sum_probs=189.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+.++|++|.++. +..+|+|+|+++++||.++|+||||||||||+++|+|+.+|. +|+|.++|.+
T Consensus 3 ~i~~~~l~~~y~~-------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~--~G~v~~~g~~ 67 (235)
T COG1122 3 MIEAENLSFRYPG-------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT--SGEVLVDGLD 67 (235)
T ss_pred eEEEEEEEEEcCC-------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC--CCEEEECCee
Confidence 4678999998852 257999999999999999999999999999999999998874 8999999998
Q ss_pred Cc----cccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 696 KI----QETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 696 ~~----~~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. ....++.+|||+|++. .+..-||.|.+.|+.... ..+.++.+++++++++.+++.+..++.. ..|
T Consensus 68 ~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~L 139 (235)
T COG1122 68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNL 139 (235)
T ss_pred ccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----ccc
Confidence 54 2356788999999964 566789999999987543 2345567889999999999999887763 589
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
||||||||+||.+|+.+|++|+|||||+|||+..+..+++.++++.++ |+|+|++|||.+ .+.+.+|++++|. +|++
T Consensus 140 SGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~-~G~i 217 (235)
T COG1122 140 SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLD-DGKI 217 (235)
T ss_pred CCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999887 799999999986 6777899999998 5999
Q ss_pred EEEcCC
Q 000937 850 IYSGPL 855 (1218)
Q Consensus 850 ~~~g~~ 855 (1218)
+++|++
T Consensus 218 ~~~g~p 223 (235)
T COG1122 218 LADGDP 223 (235)
T ss_pred eecCCH
Confidence 999986
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=339.85 Aligned_cols=218 Identities=24% Similarity=0.372 Sum_probs=189.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++.++++..+ +...+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++
T Consensus 5 L~v~~l~k~F--------------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~--~G~v~~~G~~i 68 (250)
T COG0411 5 LEVRGLSKRF--------------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS--SGTVIFRGRDI 68 (250)
T ss_pred eeeccceeec--------------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC--CceEEECCccc
Confidence 5677777666 3568999999999999999999999999999999999999984 89999999987
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhcc--------CCC-CChhhHHHHHHHHHHHcCCCcccccccc
Q 000937 697 IQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRL--------APQ-INSKTKADCVNHVLKTIELDGIKESLVG 763 (1218)
Q Consensus 697 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~--------~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 763 (1218)
... ..+..++.-+|...+|++|||.||+..++..+. +.. ...++..+++.++++.+||.+.+|...|
T Consensus 69 t~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~ 148 (250)
T COG0411 69 TGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG 148 (250)
T ss_pred CCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh
Confidence 542 234557888999999999999999998865331 111 1234456778899999999999999875
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+||+|||||+.|||||+++|++|+||||.+||.+..+.++.+.|++++++ |.||+++.||++ -++.+||++++
T Consensus 149 -----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~V 222 (250)
T COG0411 149 -----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVV 222 (250)
T ss_pred -----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEe
Confidence 79999999999999999999999999999999999999999999999885 799999999997 58899999999
Q ss_pred EecCCEEEEEcCCCC
Q 000937 843 LKTGGRIIYSGPLGN 857 (1218)
Q Consensus 843 l~~~G~~~~~g~~~~ 857 (1218)
|. .|+++.+|+|++
T Consensus 223 l~-~G~~IAeG~P~e 236 (250)
T COG0411 223 LN-YGEVIAEGTPEE 236 (250)
T ss_pred cc-CCcCcccCCHHH
Confidence 98 599999999864
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=371.16 Aligned_cols=218 Identities=24% Similarity=0.388 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++
T Consensus 2 ~L~i~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~i~g~~ 65 (353)
T PRK10851 2 SIEIANIKKSFG--------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT--SGHIRFHGTD 65 (353)
T ss_pred EEEEEEEEEEeC--------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEE
Confidence 367899998873 246999999999999999999999999999999999998774 8999999998
Q ss_pred Cccc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 696 KIQE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
+... ..++.++|++|+..++|++||+||+.|+...... .....++..++++++++.++|.+..++.+ .+||||
T Consensus 66 i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG 140 (353)
T PRK10851 66 VSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGG 140 (353)
T ss_pred CCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHH
Confidence 6432 2346799999999999999999999987643211 11233445667899999999988877764 589999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++...+|++++|. +|+++..
T Consensus 141 q~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~-~G~i~~~ 218 (353)
T PRK10851 141 QKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMS-QGNIEQA 218 (353)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEE
Confidence 999999999999999999999999999999999999999999876 899999999985 6788999999998 5999999
Q ss_pred cCCC
Q 000937 853 GPLG 856 (1218)
Q Consensus 853 g~~~ 856 (1218)
|+++
T Consensus 219 g~~~ 222 (353)
T PRK10851 219 GTPD 222 (353)
T ss_pred cCHH
Confidence 9874
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=371.69 Aligned_cols=217 Identities=25% Similarity=0.388 Sum_probs=189.1
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|+
T Consensus 18 ~~l~l~~v~~~~~--------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~i~g~ 81 (377)
T PRK11607 18 PLLEIRNLTKSFD--------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT--AGQIMLDGV 81 (377)
T ss_pred ceEEEEeEEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCE
Confidence 3588999998873 246899999999999999999999999999999999998874 899999999
Q ss_pred eCcc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 695 PKIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 695 ~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
++.. ...++.+||++|+..++|++||.||+.|+...+ .....+.+++++++++.++|.+..++.. .+||||
T Consensus 82 ~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgG 153 (377)
T PRK11607 82 DLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGG 153 (377)
T ss_pred ECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 8643 234678999999999999999999999976533 1234455667889999999998877764 489999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||+|||||+.+|++|+|||||+|||+..+..+.+.|+++.++ |.|+|++|||++ ++..++|++++|. +|+++..
T Consensus 154 q~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~-~G~i~~~ 231 (377)
T PRK11607 154 QRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMN-RGKFVQI 231 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEe-CCEEEEE
Confidence 999999999999999999999999999999999999999998764 999999999985 6788999999998 6999999
Q ss_pred cCCCC
Q 000937 853 GPLGN 857 (1218)
Q Consensus 853 g~~~~ 857 (1218)
|++.+
T Consensus 232 g~~~~ 236 (377)
T PRK11607 232 GEPEE 236 (377)
T ss_pred cCHHH
Confidence 98753
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=370.77 Aligned_cols=215 Identities=23% Similarity=0.374 Sum_probs=188.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++
T Consensus 14 ~L~l~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~--~G~I~~~g~~ 77 (375)
T PRK09452 14 LVELRGISKSFD--------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD--SGRIMLDGQD 77 (375)
T ss_pred eEEEEEEEEEEC--------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEE
Confidence 588999999873 246899999999999999999999999999999999998874 8999999998
Q ss_pred Ccc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 696 KIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
+.. ...++.+||++|+..++|++||+||+.|+...+ .....+..++++++++.++|.+..++.+ .+|||||
T Consensus 78 i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq 149 (375)
T PRK09452 78 ITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQ 149 (375)
T ss_pred CCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 643 223577999999999999999999999986433 1233444567889999999998888764 4899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||+|||||+.+|++|+|||||+|||+..+..+.+.|++++++ |+|+|++||++. ++..++|++++|. +|+++..|
T Consensus 150 ~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~-~G~i~~~g 227 (375)
T PRK09452 150 QQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMR-DGRIEQDG 227 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999875 999999999985 6788999999998 69999999
Q ss_pred CCC
Q 000937 854 PLG 856 (1218)
Q Consensus 854 ~~~ 856 (1218)
++.
T Consensus 228 ~~~ 230 (375)
T PRK09452 228 TPR 230 (375)
T ss_pred CHH
Confidence 874
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=347.14 Aligned_cols=210 Identities=29% Similarity=0.451 Sum_probs=177.4
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (213)
T cd03259 2 ELKGLSKTYG--------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVT 65 (213)
T ss_pred eeeeeEEEeC--------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcC
Confidence 5778888773 24699999999999999999999999999999999998876 4899999998764
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 Q-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
. ...++.++|++|++.+++.+|++||+.+..... ........+.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 137 (213)
T cd03259 66 GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQ 137 (213)
T ss_pred cCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHH
Confidence 3 223457999999998899999999998865322 1122334456788999999987766654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 138 rl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g 213 (213)
T cd03259 138 RVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMN-EGRIVQVG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 999999999999999999999999999999999999999764 999999999975 5677899999998 58988654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=346.81 Aligned_cols=215 Identities=24% Similarity=0.393 Sum_probs=180.6
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++..
T Consensus 2 ~~~~l~~~~~~~----------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 69 (220)
T cd03293 2 EVRNVSKTYGGG----------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVT 69 (220)
T ss_pred eEEEEEEEcCCC----------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECc
Confidence 578888877420 0114799999999999999999999999999999999998776 4899999998864
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000937 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777 (1218)
Q Consensus 698 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqR 777 (1218)
. .++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ .+||||||||
T Consensus 70 ~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 139 (220)
T cd03293 70 G--PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQR 139 (220)
T ss_pred c--ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHH
Confidence 2 35679999999988899999999988754321 222334566888999999987766654 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEEcCC
Q 000937 778 LTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKT-GGRIIYSGPL 855 (1218)
Q Consensus 778 v~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~~~~g~~ 855 (1218)
++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|.+ +|+++..+++
T Consensus 140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999999999865 4899999999985 56778999999974 5999988875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=347.92 Aligned_cols=209 Identities=23% Similarity=0.357 Sum_probs=176.2
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++.
T Consensus 2 l~~~~l~~~~~~------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 67 (216)
T TIGR00960 2 IRFEQVSKAYPG------------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDL 67 (216)
T ss_pred eEEEEEEEEecC------------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEeh
Confidence 578899988741 123699999999999999999999999999999999998876 489999999875
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
... ..++.++|++|++.+++.+||.||+.+....+. .......++++++++.+++.+..++.. .+|
T Consensus 68 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 139 (216)
T TIGR00960 68 TRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQL 139 (216)
T ss_pred hhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 321 235679999999999999999999988754321 122334566888999999987776654 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++
T Consensus 140 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~-~G~i 216 (216)
T TIGR00960 140 SGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLS-RGRL 216 (216)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcC
Confidence 999999999999999999999999999999999999999999999877999999999975 5667899999997 4763
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=363.38 Aligned_cols=215 Identities=26% Similarity=0.377 Sum_probs=184.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+
T Consensus 4 ~i~~~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 67 (303)
T TIGR01288 4 AIDLVGVSKSYG--------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEP 67 (303)
T ss_pred EEEEEeEEEEeC--------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 578999998873 24699999999999999999999999999999999998876 48999999987
Q ss_pred Ccc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 696 KIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
... ...++.+||++|++.+++.+||+||+.+...... ....+..++++++++.+++.+..++.+ ++||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG 139 (303)
T TIGR01288 68 VPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGG 139 (303)
T ss_pred CcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHH
Confidence 532 2245679999999999999999999987543321 222333456778899999988777765 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|++++.|
T Consensus 140 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 217 (303)
T TIGR01288 140 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-SGRKIAEG 217 (303)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999985 6677899999998 59999999
Q ss_pred CCC
Q 000937 854 PLG 856 (1218)
Q Consensus 854 ~~~ 856 (1218)
+++
T Consensus 218 ~~~ 220 (303)
T TIGR01288 218 RPH 220 (303)
T ss_pred CHH
Confidence 863
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=347.07 Aligned_cols=213 Identities=27% Similarity=0.379 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.
T Consensus 1 i~~~~~~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 64 (220)
T cd03265 1 IEVENLVKKYG--------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDV 64 (220)
T ss_pred CEEEEEEEEEC--------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEec
Confidence 35788888773 24699999999999999999999999999999999998876 489999999875
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.+++.+..++.+ ..|||||
T Consensus 65 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 136 (220)
T cd03265 65 VREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGM 136 (220)
T ss_pred CcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHH
Confidence 32 2234679999999999999999999988754321 122334456889999999987777664 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|
T Consensus 137 ~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~ 214 (220)
T cd03265 137 RRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIID-HGRIIAEG 214 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEeC
Confidence 99999999999999999999999999999999999999999876 899999999985 5677899999997 59999888
Q ss_pred CC
Q 000937 854 PL 855 (1218)
Q Consensus 854 ~~ 855 (1218)
++
T Consensus 215 ~~ 216 (220)
T cd03265 215 TP 216 (220)
T ss_pred Ch
Confidence 75
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=370.25 Aligned_cols=215 Identities=24% Similarity=0.393 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|. +|+|.++|++
T Consensus 3 ~l~i~~l~~~~~--------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~--~G~I~~~g~~ 66 (369)
T PRK11000 3 SVTLRNVTKAYG--------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT--SGDLFIGEKR 66 (369)
T ss_pred EEEEEEEEEEeC--------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEE
Confidence 378899998873 246999999999999999999999999999999999998774 8999999998
Q ss_pred Ccc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 696 KIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
... ...++.++|++|+..+++++||+||+.|+...+. ....+..++++++++.++|.+..++.+ .+|||||
T Consensus 67 i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq 138 (369)
T PRK11000 67 MNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQ 138 (369)
T ss_pred CCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHH
Confidence 643 1234679999999999999999999998765331 223444567889999999988777764 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|. +|+++..|
T Consensus 139 ~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~-~G~i~~~g 216 (369)
T PRK11000 139 RQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVG 216 (369)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEc
Confidence 99999999999999999999999999999999999999999765 999999999985 6778899999998 69999999
Q ss_pred CCC
Q 000937 854 PLG 856 (1218)
Q Consensus 854 ~~~ 856 (1218)
+++
T Consensus 217 ~~~ 219 (369)
T PRK11000 217 KPL 219 (369)
T ss_pred CHH
Confidence 864
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=329.54 Aligned_cols=214 Identities=26% Similarity=0.394 Sum_probs=179.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++.+|++..| ++.++|++||+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 4 L~v~~l~~~Y--------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~di 67 (237)
T COG0410 4 LEVENLSAGY--------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDI 67 (237)
T ss_pred eeEEeEeecc--------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeec
Confidence 6788888776 346899999999999999999999999999999999999886 389999999997
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcC-CCccccccccCCCCCCCC
Q 000937 697 IQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE-LDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 697 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LS 771 (1218)
... ..++.++||||....||.|||+|||..++..+.. ++......+++.+.+- |.+..+.+.| +||
T Consensus 68 t~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LS 138 (237)
T COG0410 68 TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLS 138 (237)
T ss_pred CCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCC
Confidence 542 3456799999999999999999999987654421 1111122566666653 4455555544 799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||.++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++ |.||+++.++.. ...+..|+.++|. .|+++
T Consensus 139 GGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle-~Griv 216 (237)
T COG0410 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLE-NGRIV 216 (237)
T ss_pred hHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEe-CCEEE
Confidence 99999999999999999999999999999999999999999999976 789999999875 4678899999998 59999
Q ss_pred EEcCCCC
Q 000937 851 YSGPLGN 857 (1218)
Q Consensus 851 ~~g~~~~ 857 (1218)
++|+.++
T Consensus 217 ~~G~~~e 223 (237)
T COG0410 217 LSGTAAE 223 (237)
T ss_pred EecCHHH
Confidence 9999764
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=363.94 Aligned_cols=203 Identities=27% Similarity=0.414 Sum_probs=177.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc--ccccceEEEeccCCCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ--ETFVRVSGYCEQTDIHSPHIT 719 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lT 719 (1218)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT--SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 357999999999999999999999999999999999998774 8999999988643 234567999999999999999
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsg 799 (1218)
|+||+.+.+.++. ....+..++++++++.+++.+..++.+ ++|||||||||+||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765432 223334567889999999988777765 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 800 LDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 800 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|++++.|+++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~ 209 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIID-HGRIIAEGTPE 209 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999878999999999985 6778899999997 59999999863
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=343.39 Aligned_cols=209 Identities=23% Similarity=0.410 Sum_probs=177.9
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (210)
T cd03269 2 EVENVTKRFG--------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLD 65 (210)
T ss_pred EEEEEEEEEC--------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchh
Confidence 5788888763 24699999999999999999999999999999999998776 4899999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000937 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777 (1218)
Q Consensus 698 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqR 777 (1218)
. ..++.++|++|+..+++.+|++||+.+....+. ....+..+.++++++.+++.+..++.+ .+||||||||
T Consensus 66 ~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (210)
T cd03269 66 I-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQK 136 (210)
T ss_pred H-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHH
Confidence 3 345679999999999999999999988654331 122334566788999999987666654 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 778 LTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 778 v~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|. +|++++.|
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~ 210 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLN-KGRAVLYG 210 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEe-CCEEEecC
Confidence 99999999999999999999999999999999999999877999999999975 5667899999997 58987654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=370.46 Aligned_cols=219 Identities=26% Similarity=0.365 Sum_probs=186.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++++|+|+||++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++
T Consensus 3 ~L~~~nls~~y~--------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~ 66 (402)
T PRK09536 3 MIDVSDLSVEFG--------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDD 66 (402)
T ss_pred eEEEeeEEEEEC--------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 478999998873 35799999999999999999999999999999999999877 48999999988
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC-CCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
... ...++.+||++|+..+++.+||+||+.++....... ........++++++++.+++.+..++.+ ++||
T Consensus 67 i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LS 141 (402)
T PRK09536 67 VEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLS 141 (402)
T ss_pred cCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 643 234577999999999989999999998864221100 0012334567899999999988887764 4899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||++|||+|+++|++|+|||||+|||+.++.+++++|++++++|+|||+++|+++ ++.+.+|++++|. +|+++.
T Consensus 142 gGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~-~G~iv~ 219 (402)
T PRK09536 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLA-DGRVRA 219 (402)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 5778899999998 699999
Q ss_pred EcCCCC
Q 000937 852 SGPLGN 857 (1218)
Q Consensus 852 ~g~~~~ 857 (1218)
.|++++
T Consensus 220 ~G~~~e 225 (402)
T PRK09536 220 AGPPAD 225 (402)
T ss_pred ecCHHH
Confidence 998754
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=343.26 Aligned_cols=210 Identities=24% Similarity=0.398 Sum_probs=178.1
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~ 65 (213)
T cd03301 2 ELENVTKRFG--------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVT 65 (213)
T ss_pred EEEeeEEEEC--------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5788888773 24699999999999999999999999999999999998876 4899999998864
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 QE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.. ..++.++|++|++.+++.+|++||+.+..... ....++..++++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 31 22457999999998888999999998865432 1223344556788999999987777664 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMN-DGQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEecC
Confidence 999999999999999999999999999999999999999865 899999999975 5677899999997 58998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=348.02 Aligned_cols=217 Identities=26% Similarity=0.386 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 65 (239)
T cd03296 2 SIEVRNVSKRFG--------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGED 65 (239)
T ss_pred EEEEEeEEEEEC--------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 368899998873 24699999999999999999999999999999999998876 48999999987
Q ss_pred Cccc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 696 KIQE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
.... ..++.++|++|++.+++.+||+||+.+....+.. .........+.++++++.+++.+..++.+ .+||||
T Consensus 66 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 140 (239)
T cd03296 66 ATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGG 140 (239)
T ss_pred CCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHH
Confidence 5432 2245699999999888899999999886543211 00112233456788899999987766654 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.
T Consensus 141 ~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~ 218 (239)
T cd03296 141 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMN-KGRIEQV 218 (239)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEe
Confidence 999999999999999999999999999999999999999999875 899999999985 5677899999997 5999999
Q ss_pred cCC
Q 000937 853 GPL 855 (1218)
Q Consensus 853 g~~ 855 (1218)
|++
T Consensus 219 ~~~ 221 (239)
T cd03296 219 GTP 221 (239)
T ss_pred cCH
Confidence 875
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=364.52 Aligned_cols=218 Identities=21% Similarity=0.305 Sum_probs=185.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.. .+.+++|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.++
T Consensus 2 i~i~~l~~~y~~~----------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i 69 (343)
T PRK11153 2 IELKNISKVFPQG----------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDL 69 (343)
T ss_pred EEEEeEEEEeCCC----------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 5789999988421 0135799999999999999999999999999999999999877 489999999986
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
... ..++.++|++|+..+++.+||+||+.+...... ....+..++++++++.+||.+..++.+ ++|
T Consensus 70 ~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 141 (343)
T PRK11153 70 TALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQL 141 (343)
T ss_pred CcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 421 235679999999999999999999998754331 223344567889999999987777654 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|. +|++
T Consensus 142 SgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~-~G~i 219 (343)
T PRK11153 142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVID-AGRL 219 (343)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999765 999999999985 5677899999997 6999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
++.|+++
T Consensus 220 ~~~g~~~ 226 (343)
T PRK11153 220 VEQGTVS 226 (343)
T ss_pred EEEcCHH
Confidence 9999864
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=348.59 Aligned_cols=215 Identities=24% Similarity=0.386 Sum_probs=180.1
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (236)
T cd03219 2 EVRGLTKRFG--------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDIT 65 (236)
T ss_pred eeeeeEEEEC--------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECC
Confidence 5678888763 24699999999999999999999999999999999998876 4899999998754
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCC-------CChhhHHHHHHHHHHHcCCCccccccccCCC
Q 000937 698 QE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQ-------INSKTKADCVNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 698 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
.. . .++.++|++|++.+++.+||+||+.+......... ....+..+.++++++.+++.+..++.+
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (236)
T cd03219 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA---- 141 (236)
T ss_pred CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh----
Confidence 31 1 23468999999999999999999988754321110 012334456788999999987766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +
T Consensus 142 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~-~ 218 (236)
T cd03219 142 -GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLD-Q 218 (236)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEe-C
Confidence 479999999999999999999999999999999999999999999999878999999999985 5667899999997 5
Q ss_pred CEEEEEcCC
Q 000937 847 GRIIYSGPL 855 (1218)
Q Consensus 847 G~~~~~g~~ 855 (1218)
|+++..|++
T Consensus 219 G~i~~~~~~ 227 (236)
T cd03219 219 GRVIAEGTP 227 (236)
T ss_pred CEEEeecCH
Confidence 999998875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=365.22 Aligned_cols=204 Identities=23% Similarity=0.328 Sum_probs=178.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc---cc----cceEEEeccCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE---TF----VRVSGYCEQTDIH 714 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~~~ 714 (1218)
.+.+|+|+||+|++||+++|+|||||||||||++|+|+.+| .+|+|.++|.++... .. ++.++||+|+..+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 45799999999999999999999999999999999999887 489999999986531 22 5679999999999
Q ss_pred CCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000937 715 SPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMD 794 (1218)
Q Consensus 715 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllD 794 (1218)
+|++||+||+.|..... ....++..+++.++++.+||.+..++.. .+|||||||||+|||||+.+|++||||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999876543 2234455677899999999988777764 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 795 EPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 795 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
|||+|||+.++..+.+.|+++.++ |+|||++||+++ ++...+|++++|. +|+++..|++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~e 216 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPDE 216 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHHH
Confidence 999999999999999999999765 999999999985 5778899999997 699999998653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=379.87 Aligned_cols=217 Identities=25% Similarity=0.420 Sum_probs=184.3
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
-.|+|+|++|.||.++ +.+||+|+||+|+|||++||+||||+||||+.++|-.+++| .+|+|.+||+
T Consensus 464 G~IeF~~VsFaYP~Rp-----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P--tsG~IllDG~ 530 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP-----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP--TSGRILLDGV 530 (716)
T ss_pred ceEEEEEeeeecCCCC-----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCe
Confidence 4689999999998643 46899999999999999999999999999999999999887 4999999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHH-----HHHHHHHcCCCccccccccCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADC-----VNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
|+.+ ..+++.+|+|.|++.+|. -||+|||.|+.. ..+.++..+. +.+. ..++.+-.||.+|..|
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~F--I~~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEF--ITNFPDGYNTVVGEKG 602 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHH--HHhCccccccccCCcc
Confidence 9754 346789999999999986 699999999753 2222222211 2222 3467778999999876
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
. .||||||||++|||||++||+||||||.||+||+++...+.+.|.++.+ ++|||++.|+++ ..+.+|++++++ +
T Consensus 603 ~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~-~ 677 (716)
T KOG0058|consen 603 S-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVID-K 677 (716)
T ss_pred c-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEc-C
Confidence 4 6999999999999999999999999999999999999999999999865 599999999875 589999999998 5
Q ss_pred CEEEEEcCCCC
Q 000937 847 GRIIYSGPLGN 857 (1218)
Q Consensus 847 G~~~~~g~~~~ 857 (1218)
|++++.|+.++
T Consensus 678 G~V~E~G~h~e 688 (716)
T KOG0058|consen 678 GRVVEMGTHDE 688 (716)
T ss_pred CeEEecccHHH
Confidence 99999997643
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=343.11 Aligned_cols=215 Identities=27% Similarity=0.447 Sum_probs=180.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.. .+..++++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++.
T Consensus 2 l~~~~v~~~~~~~----------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 69 (218)
T cd03266 2 ITADALTKRFRDV----------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDV 69 (218)
T ss_pred eEEEEEEEecCCC----------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEc
Confidence 5688999887421 0112699999999999999999999999999999999999876 489999999876
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ..+++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..+..+ ..|||||
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (218)
T cd03266 70 VKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGM 141 (218)
T ss_pred ccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHH
Confidence 43 234567999999999999999999998765432 1223344567888999999987777654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 142 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~ 218 (218)
T cd03266 142 RQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLH-RGRVVYEG 218 (218)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEeecC
Confidence 99999999999999999999999999999999999999999877999999999975 5677899999997 58987654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=345.96 Aligned_cols=213 Identities=23% Similarity=0.371 Sum_probs=180.6
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 65 (232)
T cd03218 2 RAENLSKRYG--------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDIT 65 (232)
T ss_pred eEEEEEEEeC--------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 5788888773 24699999999999999999999999999999999998876 4899999998753
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 698 QE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 698 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
.. . .++.++|++|++.+++.+||+||+.+....+. .......+.++++++.+++.+..++.+ +.||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHH
Confidence 21 1 23468999999999999999999987643321 122334456788999999987766654 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..|
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 215 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIY-EGKVLAEG 215 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEEe
Confidence 999999999999999999999999999999999999999999877999999999985 6788899999997 69999988
Q ss_pred CCC
Q 000937 854 PLG 856 (1218)
Q Consensus 854 ~~~ 856 (1218)
+.+
T Consensus 216 ~~~ 218 (232)
T cd03218 216 TPE 218 (232)
T ss_pred CHH
Confidence 763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=357.37 Aligned_cols=213 Identities=23% Similarity=0.384 Sum_probs=185.2
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.
T Consensus 3 l~~~~l~~~~~--------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~ 66 (301)
T TIGR03522 3 IRVSSLTKLYG--------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEC--------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 67899998873 24699999999999999999999999999999999999876 489999999886
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.+||++|++.+++.+||.||+.+.+.++. ...++..++++++++.+|+.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 138 (301)
T TIGR03522 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGY 138 (301)
T ss_pred ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHH
Confidence 43 2345679999999999999999999998765432 223344556889999999998887775 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcC
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 854 (1218)
|||++||+||+++|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|. +|++++.|+
T Consensus 139 ~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~-~G~i~~~g~ 215 (301)
T TIGR03522 139 RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIIN-KGKIVADKK 215 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCC
Confidence 9999999999999999999999999999999999999999865 799999999985 6788899999998 599999998
Q ss_pred CC
Q 000937 855 LG 856 (1218)
Q Consensus 855 ~~ 856 (1218)
.+
T Consensus 216 ~~ 217 (301)
T TIGR03522 216 LD 217 (301)
T ss_pred HH
Confidence 64
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=340.96 Aligned_cols=206 Identities=28% Similarity=0.426 Sum_probs=175.8
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (208)
T cd03268 2 KTNDLTKTYG--------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQ 65 (208)
T ss_pred EEEEEEEEEC--------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCccc
Confidence 5788888773 24699999999999999999999999999999999998876 4899999998753
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 Q-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
. ...++.++|++|++.+++.+||+||+.+....+. . ..++++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 2 2334679999999999999999999988654221 1 2345778899999987777654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|. +|++++.|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIIN-KGKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 999999999999999999999999999999999999999878999999999975 5667899999997 58988764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=342.74 Aligned_cols=219 Identities=35% Similarity=0.628 Sum_probs=181.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---CCceeeEEEECC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT---SGCFKGEIKVNG 693 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~---~~~~~G~i~~~g 693 (1218)
+.|+|+++.++.. +..+++++|+|+++++||+++|+||||||||||+++|+|..+ + .+|+|.++|
T Consensus 4 ~~~~~~~~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~--~~G~i~~~g 71 (226)
T cd03234 4 LPWWDVGLKAKNW----------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT--TSGQILFNG 71 (226)
T ss_pred ceeecceeeeecC----------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCC--CceEEEECC
Confidence 5688998887421 013579999999999999999999999999999999999876 4 489999999
Q ss_pred EeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHH-HHHHcCCCccccccccCCCCCCCCH
Q 000937 694 YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNH-VLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 694 ~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
.+......++.++|++|++.+++.+||+||+.+......+.........+++++ .++.+++.+..++.+ +.|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 146 (226)
T cd03234 72 QPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISG 146 (226)
T ss_pred EECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCH
Confidence 886544456779999999999999999999998765432221112222234455 788888877666553 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++|. +|++++.
T Consensus 147 G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~-~G~i~~~ 225 (226)
T cd03234 147 GERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLS-SGEIVYS 225 (226)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEe-CCEEEec
Confidence 999999999999999999999999999999999999999999987799999999998546889999999998 5899876
Q ss_pred c
Q 000937 853 G 853 (1218)
Q Consensus 853 g 853 (1218)
|
T Consensus 226 g 226 (226)
T cd03234 226 G 226 (226)
T ss_pred C
Confidence 5
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=326.54 Aligned_cols=213 Identities=25% Similarity=0.419 Sum_probs=192.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
+++++++.++ +++++++|+||+++||++.+++|||||||||.+++|.|+..+ ++|+|.++|.+.
T Consensus 3 L~ie~vtK~F--------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~ 66 (300)
T COG4152 3 LEIEGVTKSF--------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPL 66 (300)
T ss_pred eEEecchhcc--------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcch
Confidence 5677777666 357899999999999999999999999999999999999887 489999999997
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
+.. .+.+|||.|.+.-+++.+||.|.|.|-+.++. ++..+.++.++.+++.+++.+....++ ++||.|++|
T Consensus 67 ~~~-~~~rIGyLPEERGLy~k~tv~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQ 137 (300)
T COG4152 67 SQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQ 137 (300)
T ss_pred hhh-hhhhcccChhhhccCccCcHHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhH
Confidence 643 45679999999999999999999999998874 456677778899999999998877765 589999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
++.+..+++++|++++||||+|||||.+.+.+-+.+.+++++|.|||+++|++. .+.++||++++|. +|+.|.+|+..
T Consensus 138 KIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~-kG~~V~~G~v~ 215 (300)
T COG4152 138 KIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLK-KGQTVLYGTVE 215 (300)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheec-CCceEEeccHH
Confidence 999999999999999999999999999999999999999999999999999986 7889999999998 59999999974
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=345.07 Aligned_cols=214 Identities=25% Similarity=0.321 Sum_probs=177.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC-----CCCceeeEEEEC
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK-----TSGCFKGEIKVN 692 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~-----~~~~~~G~i~~~ 692 (1218)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ .+|+|.++
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~--~~G~i~~~ 65 (227)
T cd03260 2 ELRDLNVYYG--------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP--DEGEVLLD 65 (227)
T ss_pred EEEEEEEEcC--------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC--CCeEEEEC
Confidence 5788888763 246999999999999999999999999999999999987 55 48999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|++... ...++.++|++|++.++ .+||+||+.+....+. .....+..++++++++.+++.+..+.... +
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987532 22356799999998887 7999999988654321 11112234567889999999876555421 2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.+|++++|. +|
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~-~G 216 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLL-NG 216 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEe-CC
Confidence 479999999999999999999999999999999999999999999999877 99999999985 5677899999998 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
++++.|+++
T Consensus 217 ~i~~~g~~~ 225 (227)
T cd03260 217 RLVEFGPTE 225 (227)
T ss_pred EEEEecCcc
Confidence 999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=343.53 Aligned_cols=208 Identities=29% Similarity=0.425 Sum_probs=173.1
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++.. ++.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~~----------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 69 (218)
T cd03255 2 ELKNLSKTYGGG----------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDIS 69 (218)
T ss_pred eEeeeEEEecCC----------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehh
Confidence 578888877421 0114799999999999999999999999999999999999876 4899999998754
Q ss_pred cc------c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 698 QE------T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 698 ~~------~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. . .++.++|++|++.+++.+||+||+.+....+. .......+.++++++.+|+.+..++.+ +.|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 21 1 24579999999999999999999998754331 122334456888999999987766654 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ +.+|++++|. +|+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~-~G~ 217 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELR-DGK 217 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEee-CCc
Confidence 99999999999999999999999999999999999999999999987 5999999999985 34 5899999997 475
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=317.73 Aligned_cols=215 Identities=27% Similarity=0.446 Sum_probs=184.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
|+.+|++|++. .+++|++||++++|||++||+||||||||||||.|+|...|+ +|++.+||.+.
T Consensus 2 i~a~nls~~~~--------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~--~G~v~~~g~~l 65 (259)
T COG4559 2 IRAENLSYSLA--------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPL 65 (259)
T ss_pred eeeeeeEEEee--------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC--CCeEeeCCcCh
Confidence 56789999873 468999999999999999999999999999999999987764 89999999986
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCC--hhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQIN--SKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.. ....+..+.+||+..+-+..||+|-+.++.. +.... ..+..+.++++++..++.++..+.+ ..||
T Consensus 66 ~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LS 137 (259)
T COG4559 66 NSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRDY-----RTLS 137 (259)
T ss_pred hhCCHHHHHHHhhhcccCcccccceEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccch-----hhcC
Confidence 43 2344667899999988878999999998743 32222 2245556888999999999887764 4799
Q ss_pred HHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 772 TEQRKRLTIGVELVA------NPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 772 gGerqRv~ia~~L~~------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
|||||||.+||.|++ ++++||||||||.||...+..++++.|+++++|..|+++.||++. ...++|++++|.
T Consensus 138 GGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~- 215 (259)
T COG4559 138 GGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH- 215 (259)
T ss_pred chHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-
Confidence 999999999999986 445899999999999999999999999999999999999999985 567899999997
Q ss_pred CCEEEEEcCCCC
Q 000937 846 GGRIIYSGPLGN 857 (1218)
Q Consensus 846 ~G~~~~~g~~~~ 857 (1218)
+||++..|++.+
T Consensus 216 ~Grv~a~g~p~~ 227 (259)
T COG4559 216 QGRVIASGSPQD 227 (259)
T ss_pred CCeEeecCCHHH
Confidence 699999999875
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=349.62 Aligned_cols=217 Identities=27% Similarity=0.361 Sum_probs=178.8
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++..
T Consensus 2 ~~~~l~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 66 (241)
T cd03256 2 EVENLSKTYPN-------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDIN 66 (241)
T ss_pred EEeeEEEecCC-------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEecc
Confidence 57788877631 14699999999999999999999999999999999998876 4899999998754
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhcc-----CCCCChhhHHHHHHHHHHHcCCCccccccccCCC
Q 000937 698 QE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRL-----APQINSKTKADCVNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 698 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
.. ..++.++|++|++.+++.+||+||+.+...... ..........++++++++.+++.+..+..+
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 142 (241)
T cd03256 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA---- 142 (241)
T ss_pred ccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc----
Confidence 21 234679999999999999999999987532110 000111233456788899999987666553
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 143 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~- 219 (241)
T cd03256 143 -DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLK- 219 (241)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 589999999999999999999999999999999999999999999999764 999999999986 5667899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|++++.|+++
T Consensus 220 ~G~i~~~~~~~ 230 (241)
T cd03256 220 DGRIVFDGPPA 230 (241)
T ss_pred CCEEEeecCHH
Confidence 59999998764
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=341.83 Aligned_cols=217 Identities=24% Similarity=0.365 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 5 ~l~~~~l~~~~~~~----------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 72 (233)
T PRK11629 5 LLQCDNLCKRYQEG----------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQP 72 (233)
T ss_pred eEEEEeEEEEcCCC----------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 47899999987421 0114699999999999999999999999999999999998876 48999999988
Q ss_pred Ccccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCC
Q 000937 696 KIQET------F-VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 768 (1218)
+.... . ++.++|++|+..+++.+|++||+.+..... .....+.+++++++++.+|+.+..++.+ .
T Consensus 73 i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (233)
T PRK11629 73 MSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----S 144 (233)
T ss_pred cCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----h
Confidence 64211 1 256999999998899999999998865432 1123334567889999999987766654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ....+|++++|. +|
T Consensus 145 ~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~-~G 221 (233)
T PRK11629 145 ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMR-DG 221 (233)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEE-CC
Confidence 7999999999999999999999999999999999999999999999976 5899999999974 345678998887 69
Q ss_pred EEEEEcCC
Q 000937 848 RIIYSGPL 855 (1218)
Q Consensus 848 ~~~~~g~~ 855 (1218)
+++..|+.
T Consensus 222 ~i~~~~~~ 229 (233)
T PRK11629 222 RLTAELSL 229 (233)
T ss_pred EEEEEecc
Confidence 99988875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=340.06 Aligned_cols=192 Identities=30% Similarity=0.435 Sum_probs=163.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCC-CCCCCCHH
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDI-HSPHITIE 721 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~~lTv~ 721 (1218)
+++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+......++.++|++|++. .+..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 4699999999999999999999999999999999998876 48999999988643344567999999964 34568999
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000937 722 ESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801 (1218)
Q Consensus 722 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD 801 (1218)
||+.+..... . ...++++++++.+++.+..++.+ .+||||||||++|||+|+.+|++++|||||+|||
T Consensus 91 e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754321 1 11245788999999987777664 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 802 ARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 802 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLA-NGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEC
Confidence 99999999999999878999999999985 5667899999997 58764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=342.60 Aligned_cols=214 Identities=26% Similarity=0.436 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. +++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (220)
T cd03263 1 LQIRNLTKTYKK------------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSI 66 (220)
T ss_pred CEEEeeEEEeCC------------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEec
Confidence 357888887731 114699999999999999999999999999999999999876 489999999885
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.++|++|++.+++.+|++||+.+...... ....+..++++++++.+++.+..++.+ .+|||||
T Consensus 67 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (220)
T cd03263 67 RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGM 138 (220)
T ss_pred ccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHH
Confidence 42 2345679999999988889999999988654331 122333456788999999987766654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcC
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 854 (1218)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|+++++. +|+++..|+
T Consensus 139 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~ 215 (220)
T cd03263 139 KRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMS-DGKLRCIGS 215 (220)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecCC
Confidence 9999999999999999999999999999999999999999876 599999999985 5667899999997 599999887
Q ss_pred C
Q 000937 855 L 855 (1218)
Q Consensus 855 ~ 855 (1218)
+
T Consensus 216 ~ 216 (220)
T cd03263 216 P 216 (220)
T ss_pred H
Confidence 5
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=344.30 Aligned_cols=217 Identities=21% Similarity=0.317 Sum_probs=181.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|+++
T Consensus 2 i~~~~l~~~~~~~----------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 69 (233)
T cd03258 2 IELKNVSKVFGDT----------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDL 69 (233)
T ss_pred eEEecceEEccCC----------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 5688888877420 0113799999999999999999999999999999999999876 489999999985
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
... ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..+... ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (233)
T cd03258 70 TLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQL 141 (233)
T ss_pred ccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhC
Confidence 421 124679999999999999999999988654321 223334556788999999987766654 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i 219 (233)
T cd03258 142 SGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVME-KGEV 219 (233)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999775 899999999975 5667899999997 6999
Q ss_pred EEEcCC
Q 000937 850 IYSGPL 855 (1218)
Q Consensus 850 ~~~g~~ 855 (1218)
+..|+.
T Consensus 220 ~~~~~~ 225 (233)
T cd03258 220 VEEGTV 225 (233)
T ss_pred EEecCH
Confidence 998875
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=343.70 Aligned_cols=215 Identities=23% Similarity=0.358 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~--------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 65 (240)
T PRK09493 2 IEFKNVSKHFG--------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKV 65 (240)
T ss_pred EEEEeEEEEEC--------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 57889988773 24699999999999999999999999999999999998876 489999999885
Q ss_pred cc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 697 IQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 697 ~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.. ...++.++|++|++.+++.+||+||+.+...... .....+..+.+.++++.+|+.+..+..+ +.||
T Consensus 66 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS 138 (240)
T PRK09493 66 NDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELS 138 (240)
T ss_pred CcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcC
Confidence 42 1235679999999989999999999987642111 1223334556788999999987666654 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 139 ~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~ 216 (240)
T PRK09493 139 GGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFID-KGRIAE 216 (240)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEe
Confidence 99999999999999999999999999999999999999999999877999999999985 5667799999997 599999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|+.+
T Consensus 217 ~g~~~ 221 (240)
T PRK09493 217 DGDPQ 221 (240)
T ss_pred eCCHH
Confidence 98753
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=351.44 Aligned_cols=219 Identities=23% Similarity=0.350 Sum_probs=181.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|+.+| .+|+|.++|.+.
T Consensus 3 l~~~~l~~~y~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13637 3 IKIENLTHIYMEGT---------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEECCCCC---------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 78999999874210 0124699999999999999999999999999999999999877 489999999886
Q ss_pred cc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC--ccccccccCCCCC
Q 000937 697 IQ-----ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD--GIKESLVGIPGVS 768 (1218)
Q Consensus 697 ~~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~ 768 (1218)
.. ...++.+||++|++. .+...||+||+.+..... ....++..++++++++.+||. +..++.+ +
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~ 143 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----F 143 (287)
T ss_pred CCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----c
Confidence 43 134567999999863 334579999999865432 223444556788999999996 5555553 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||++||+++ ++.+.+|++++|. +|
T Consensus 144 ~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~-~G 221 (287)
T PRK13637 144 ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMN-KG 221 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 89999999999999999999999999999999999999999999999875 999999999975 5667899999998 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
++++.|+++
T Consensus 222 ~i~~~g~~~ 230 (287)
T PRK13637 222 KCELQGTPR 230 (287)
T ss_pred EEEEECCHH
Confidence 999999863
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=344.28 Aligned_cols=212 Identities=27% Similarity=0.401 Sum_probs=179.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 65 (255)
T PRK11248 2 LQISHLYADYG--------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPV 65 (255)
T ss_pred EEEEEEEEEeC--------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 57889988773 24699999999999999999999999999999999999876 489999999886
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.. ..+.++|++|++.+++.+||.||+.+....+ .....+..++++++++.+++.+..++.+ .+|||||||
T Consensus 66 ~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~q 135 (255)
T PRK11248 66 EG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQ 135 (255)
T ss_pred CC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHH
Confidence 43 2245899999998889999999998764332 1223334456888999999987666553 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEEcC
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKT-GGRIIYSGP 854 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~~~~g~ 854 (1218)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++...+|++++|.+ +|+++..++
T Consensus 136 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEec
Confidence 99999999999999999999999999999999999999854 5899999999985 56788999999974 599998876
Q ss_pred C
Q 000937 855 L 855 (1218)
Q Consensus 855 ~ 855 (1218)
.
T Consensus 215 ~ 215 (255)
T PRK11248 215 L 215 (255)
T ss_pred C
Confidence 5
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=348.29 Aligned_cols=218 Identities=24% Similarity=0.322 Sum_probs=179.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.+. .++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++
T Consensus 2 l~~~~l~~~~~-------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (243)
T TIGR02315 2 LEVENLSKVYP-------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDI 66 (243)
T ss_pred eEEEeeeeecC-------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEh
Confidence 56788887763 124699999999999999999999999999999999999876 489999999875
Q ss_pred cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhcc-----CCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 697 IQ------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRL-----APQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 697 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
.. ...++.++|++|++.+++.+||+||+.++..... .......+..++++++++.+++.+..+..+
T Consensus 67 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 143 (243)
T TIGR02315 67 TKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA--- 143 (243)
T ss_pred hhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc---
Confidence 32 1235679999999999999999999976431100 000112233456788999999987666653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 144 --~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~ 220 (243)
T TIGR02315 144 --DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLK 220 (243)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE
Confidence 579999999999999999999999999999999999999999999999764 899999999985 5667899999997
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+++
T Consensus 221 -~G~i~~~~~~~ 231 (243)
T TIGR02315 221 -AGEIVFDGAPS 231 (243)
T ss_pred -CCEEEecCCHH
Confidence 59999888764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=338.74 Aligned_cols=207 Identities=26% Similarity=0.370 Sum_probs=174.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 l~~~~l~~~~~-------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 66 (214)
T TIGR02673 2 IEFHNVSKAYP-------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDV 66 (214)
T ss_pred EEEEeeeEEeC-------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 57888888773 124699999999999999999999999999999999998876 489999999876
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
... ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.+ ..|
T Consensus 67 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 138 (214)
T TIGR02673 67 NRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQL 138 (214)
T ss_pred ccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 234679999999998999999999988754321 223334466788999999987666554 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+
T Consensus 139 S~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~-~G~ 214 (214)
T TIGR02673 139 SGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILD-DGR 214 (214)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEec-CCC
Confidence 999999999999999999999999999999999999999999999877999999999985 5667899999997 453
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=353.96 Aligned_cols=220 Identities=23% Similarity=0.346 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++... .....+|+|+|++|++||+++|+||||||||||+++|+|..+|. +|+|.++|.+
T Consensus 2 ~i~~~~l~~~y~~~~---------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~ 70 (305)
T PRK13651 2 QIKVKNIVKIFNKKL---------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWIFKD 70 (305)
T ss_pred EEEEEEEEEEECCCC---------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEEecee
Confidence 378999999885210 01236999999999999999999999999999999999998874 8999999875
Q ss_pred Cc---------------------------cccccceEEEeccCC-CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHH
Q 000937 696 KI---------------------------QETFVRVSGYCEQTD-IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNH 747 (1218)
Q Consensus 696 ~~---------------------------~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 747 (1218)
.. ....++.+|||+|++ ..+...||+||+.|+.... ....++..+++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~ 147 (305)
T PRK13651 71 EKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAK 147 (305)
T ss_pred cccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHH
Confidence 31 012356799999985 3445679999999875432 2234455567889
Q ss_pred HHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Q 000937 748 VLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTI 826 (1218)
Q Consensus 748 ~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~ 826 (1218)
+++.+||. +..++.. ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|
T Consensus 148 ~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivt 222 (305)
T PRK13651 148 YIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVT 222 (305)
T ss_pred HHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 99999996 5666553 58999999999999999999999999999999999999999999999987799999999
Q ss_pred cCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 827 HQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 827 H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
|+++ ++.+.+|++++|. +|++++.|+++
T Consensus 223 Hd~~-~~~~~adrv~vl~-~G~i~~~g~~~ 250 (305)
T PRK13651 223 HDLD-NVLEWTKRTIFFK-DGKIIKDGDTY 250 (305)
T ss_pred eCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9975 5678899999997 69999999864
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=338.97 Aligned_cols=206 Identities=25% Similarity=0.342 Sum_probs=173.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.++.
T Consensus 2 ~~~~l~~~~~~-------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 66 (214)
T cd03292 2 EFINVTKTYPN-------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVS 66 (214)
T ss_pred EEEEEEEEeCC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 57788887731 24699999999999999999999999999999999998776 4899999998753
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 698 QE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 698 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.. ..++.++|++|++.+++.+|++||+.+....+. ...++..++++++++.+++.+..++.+ .+||
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (214)
T cd03292 67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELS 138 (214)
T ss_pred cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcC
Confidence 21 235679999999999999999999988754321 223334456788999999987766654 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|. +|+
T Consensus 139 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~-~G~ 213 (214)
T cd03292 139 GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALE-RGK 213 (214)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCc
Confidence 99999999999999999999999999999999999999999999777999999999975 5566799999997 475
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=340.79 Aligned_cols=210 Identities=27% Similarity=0.419 Sum_probs=175.5
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (222)
T cd03224 2 EVENLNAGYG--------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDIT 65 (222)
T ss_pred EEeeEEeecC--------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 5788887663 24699999999999999999999999999999999999876 4899999998754
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHc-CCCccccccccCCCCCCCCH
Q 000937 698 QE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI-ELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 698 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~LSg 772 (1218)
.. . .++.++|++|++.+++.+|++||+.+...... ..+..+.++++++.+ ++.+..++.+ ++|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCH
Confidence 21 1 24569999999999999999999988654321 122334566777777 4665555543 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLE-RGRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEee-CCeEEEe
Confidence 9999999999999999999999999999999999999999999877999999999975 5678899999997 5999988
Q ss_pred cCC
Q 000937 853 GPL 855 (1218)
Q Consensus 853 g~~ 855 (1218)
|+.
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 875
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=348.11 Aligned_cols=216 Identities=21% Similarity=0.327 Sum_probs=182.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+
T Consensus 7 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 70 (269)
T PRK11831 7 LVDMRGVSFTRG--------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGEN 70 (269)
T ss_pred eEEEeCeEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEE
Confidence 478999998873 24699999999999999999999999999999999999876 48999999987
Q ss_pred Cccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000937 696 KIQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769 (1218)
Q Consensus 696 ~~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 769 (1218)
+... ..++.++|++|+..+++.+||.||+.+...... ........+.+.++++.+++.+..+..+ ..
T Consensus 71 i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 143 (269)
T PRK11831 71 IPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SE 143 (269)
T ss_pred ccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hh
Confidence 5321 124569999999989999999999987643211 1122333456778899999987777654 47
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|. +|+
T Consensus 144 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~-~G~ 221 (269)
T PRK11831 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVA-DKK 221 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999765 899999999975 5677899999997 699
Q ss_pred EEEEcCCC
Q 000937 849 IIYSGPLG 856 (1218)
Q Consensus 849 ~~~~g~~~ 856 (1218)
+++.|+++
T Consensus 222 i~~~g~~~ 229 (269)
T PRK11831 222 IVAHGSAQ 229 (269)
T ss_pred EEEeCCHH
Confidence 99998763
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=343.63 Aligned_cols=213 Identities=24% Similarity=0.379 Sum_probs=179.6
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (242)
T cd03295 2 EFENVTKRYGG-------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIR 66 (242)
T ss_pred EEEEEEEEeCC-------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcC
Confidence 57788887631 14699999999999999999999999999999999998876 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG--IKESLVGIPGVSGLST 772 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~LSg 772 (1218)
. ...++.++|++|++.+++.+||+||+.+..... ........+.++++++.+++.+ ..++.+ ++|||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~ 138 (242)
T cd03295 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSG 138 (242)
T ss_pred cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCH
Confidence 2 233567899999999999999999998865432 1223334556788999999985 555543 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~ 216 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK-NGEIVQ 216 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999865 899999999985 5677899999997 599999
Q ss_pred EcCC
Q 000937 852 SGPL 855 (1218)
Q Consensus 852 ~g~~ 855 (1218)
.|++
T Consensus 217 ~~~~ 220 (242)
T cd03295 217 VGTP 220 (242)
T ss_pred ecCH
Confidence 8875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=348.53 Aligned_cols=215 Identities=26% Similarity=0.349 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 68 (274)
T PRK13647 4 IIEVEDLHFRYKD-------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGRE 68 (274)
T ss_pred eEEEEEEEEEeCC-------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 4789999988741 23699999999999999999999999999999999999876 48999999988
Q ss_pred Ccc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
... ...++.++|++|++. .++..||.||+.|..... ........++++++++.++|.+..++.+ .+||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 140 (274)
T PRK13647 69 VNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLS 140 (274)
T ss_pred CCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCC
Confidence 643 223467999999863 455689999998864321 1223344456888999999987777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|. +|++++
T Consensus 141 gG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~ 218 (274)
T PRK13647 141 YGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLK-EGRVLA 218 (274)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 4667899999997 699999
Q ss_pred EcCC
Q 000937 852 SGPL 855 (1218)
Q Consensus 852 ~g~~ 855 (1218)
.|++
T Consensus 219 ~g~~ 222 (274)
T PRK13647 219 EGDK 222 (274)
T ss_pred ECCH
Confidence 9986
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=344.61 Aligned_cols=214 Identities=26% Similarity=0.370 Sum_probs=180.8
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++.
T Consensus 4 l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (250)
T PRK11264 4 IEVKNLVKKFH--------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITI 67 (250)
T ss_pred EEEeceEEEEC--------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEc
Confidence 68899998873 23699999999999999999999999999999999998876 489999999875
Q ss_pred cc-----------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 697 IQ-----------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 697 ~~-----------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
.. ...++.++|++|++.+++.+|+.||+.++..... ........++++++++.+++.+..+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~--- 142 (250)
T PRK11264 68 DTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP--- 142 (250)
T ss_pred cccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh---
Confidence 32 1234579999999989999999999987543111 1223334556788999999987666553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.
T Consensus 143 --~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~- 218 (250)
T PRK11264 143 --RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMD- 218 (250)
T ss_pred --hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-
Confidence 579999999999999999999999999999999999999999999999877999999999975 5667899999997
Q ss_pred CCEEEEEcCC
Q 000937 846 GGRIIYSGPL 855 (1218)
Q Consensus 846 ~G~~~~~g~~ 855 (1218)
+|++++.|+.
T Consensus 219 ~G~i~~~~~~ 228 (250)
T PRK11264 219 QGRIVEQGPA 228 (250)
T ss_pred CCEEEEeCCH
Confidence 5999998875
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=351.24 Aligned_cols=218 Identities=25% Similarity=0.343 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++... ...+.+|+|+|++|++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 2 i~~~~v~~~y~~~~---------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 70 (288)
T PRK13643 2 IKFEKVNYTYQPNS---------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT--EGKVTVGDIVV 70 (288)
T ss_pred EEEEEEEEEeCCCC---------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 67899999885210 01235999999999999999999999999999999999998774 89999999986
Q ss_pred cc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCC
Q 000937 697 IQ-------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPG 766 (1218)
Q Consensus 697 ~~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 766 (1218)
.. ...++.+|||+|++ .+++ .||.||+.|+.... .....+..+++.++++.++|. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~----- 141 (288)
T PRK13643 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS----- 141 (288)
T ss_pred ccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----
Confidence 31 12456799999986 4444 69999999875432 123444566788999999995 455554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +
T Consensus 142 ~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~-~ 219 (288)
T PRK13643 142 PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLE-K 219 (288)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 3589999999999999999999999999999999999999999999999877999999999975 5667899999998 5
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|++++.|+++
T Consensus 220 G~i~~~g~~~ 229 (288)
T PRK13643 220 GHIISCGTPS 229 (288)
T ss_pred CEEEEECCHH
Confidence 9999999874
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=342.92 Aligned_cols=207 Identities=21% Similarity=0.304 Sum_probs=177.7
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.
T Consensus 11 ~~l~i~~l~~~~~--------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~ 74 (257)
T PRK11247 11 TPLLLNAVSKRYG--------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTA 74 (257)
T ss_pred CcEEEEEEEEEEC--------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCE
Confidence 3488999999883 24699999999999999999999999999999999999876 4899999997
Q ss_pred eCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
+.. ..++.++|++|++.+++.+||+||+.+... . ...++++++++.+++.+..+..+ ..|||||
T Consensus 75 ~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--------~-~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 138 (257)
T PRK11247 75 PLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK--------G-QWRDAALQALAAVGLADRANEWP-----AALSGGQ 138 (257)
T ss_pred EHH--HhhCceEEEecCccCCCCCcHHHHHHhccc--------c-hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 753 245679999999988898999999987421 0 12345778899999987666654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 139 kqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~-~G~i~~~~ 216 (257)
T PRK11247 139 KQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIE-EGKIGLDL 216 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeec
Confidence 9999999999999999999999999999999999999999865 4899999999975 5667899999998 58999887
Q ss_pred CC
Q 000937 854 PL 855 (1218)
Q Consensus 854 ~~ 855 (1218)
+.
T Consensus 217 ~~ 218 (257)
T PRK11247 217 TV 218 (257)
T ss_pred cc
Confidence 65
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=350.26 Aligned_cols=219 Identities=21% Similarity=0.314 Sum_probs=180.9
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++... ...+++|+|||++|++||+++|+||||||||||+++|+|+.+|. +|+|.++|+++
T Consensus 3 l~~~~l~~~y~~~~---------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 71 (290)
T PRK13634 3 ITFQKVEHRYQYKT---------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT--SGTVTIGERVI 71 (290)
T ss_pred EEEEEEEEEECCCC---------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 68999999984210 01246999999999999999999999999999999999998764 89999999976
Q ss_pred cc-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000937 697 IQ-------ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGV 767 (1218)
Q Consensus 697 ~~-------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 767 (1218)
.. ...++.+||++|++. .+...||+||+.|+.... .....+..++++++++.++|. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (290)
T PRK13634 72 TAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP----- 143 (290)
T ss_pred ccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----
Confidence 31 134567999999852 333579999999875422 123334456788999999996 5556553
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.++|++++++ |.|||++||+++ ++.+.+|++++|. +
T Consensus 144 ~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~ 221 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-K 221 (290)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 589999999999999999999999999999999999999999999999765 999999999985 5778899999997 6
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|++++.|+++
T Consensus 222 G~i~~~g~~~ 231 (290)
T PRK13634 222 GTVFLQGTPR 231 (290)
T ss_pred CEEEEECCHH
Confidence 9999999863
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=349.04 Aligned_cols=203 Identities=22% Similarity=0.322 Sum_probs=173.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc---c----ccceEEEeccCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE---T----FVRVSGYCEQTDIH 714 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~~ 714 (1218)
.+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+.... . .++.++|++|++.+
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 45799999999999999999999999999999999999876 489999999875321 1 13569999999999
Q ss_pred CCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000937 715 SPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMD 794 (1218)
Q Consensus 715 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllD 794 (1218)
++.+||+||+.+...... .......++++++++.+++.+..++.+ .+||||||||++||++|+.+|++|+||
T Consensus 114 ~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 114 LPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred CCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999988654321 123334456788999999987777664 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 795 EPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 795 EPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|+++
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~ 246 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMK-DGRLVQVGTPE 246 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999999765 899999999975 5677899999997 69999988753
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=307.25 Aligned_cols=201 Identities=27% Similarity=0.423 Sum_probs=177.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHH
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEE 722 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 722 (1218)
..+|+|+|++|.+||.++++||||||||||||+++|..+|. .|+|.+||+++..... ..|.|+|++.++|.+||.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~--~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS--RGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc--cceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 46899999999999999999999999999999999998874 8999999998764322 3489999999999999999
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000937 723 SLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA 802 (1218)
Q Consensus 723 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~ 802 (1218)
|+.|+.+++. ..+.++.+++.+.+...||.+..++.+ -+|||||||||.|||||+.+|++|+||||+++||.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999998874 457778888999999999998877664 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEec-CCEEEEEcCCC
Q 000937 803 RAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKT-GGRIIYSGPLG 856 (1218)
Q Consensus 803 ~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-~G~~~~~g~~~ 856 (1218)
-+++++.++|-++.+ .|+.++++||+.+ |..-+++++++|.. .||++..-+++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999998865 4999999999986 55567899999973 37888877763
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=352.24 Aligned_cols=220 Identities=25% Similarity=0.350 Sum_probs=181.5
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++... ...+.+|+|+|++|++||+++|+||||||||||+++|+|+.+|. +|+|.++|.
T Consensus 20 ~~l~~~nl~~~y~~~~---------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~--~G~I~i~g~ 88 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ---------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK--YGTIQVGDI 88 (320)
T ss_pred ceEEEEeEEEEeCCCC---------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCE
Confidence 3589999999985210 01246999999999999999999999999999999999998874 899999998
Q ss_pred eCcc-------------------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcC
Q 000937 695 PKIQ-------------------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE 753 (1218)
Q Consensus 695 ~~~~-------------------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 753 (1218)
+... ...++.++||+|++ .+++ .||+||+.|+.... ....++..++++++++.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~g 164 (320)
T PRK13631 89 YIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMG 164 (320)
T ss_pred EcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcC
Confidence 7532 12456799999986 3554 59999998865321 1233444567888999999
Q ss_pred CC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHH
Q 000937 754 LD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSID 832 (1218)
Q Consensus 754 l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 832 (1218)
+. +..++. +.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ +
T Consensus 165 L~~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~ 238 (320)
T PRK13631 165 LDDSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-H 238 (320)
T ss_pred CChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-H
Confidence 96 455544 3589999999999999999999999999999999999999999999999877999999999975 4
Q ss_pred HHHhhceEEEEecCCEEEEEcCCC
Q 000937 833 IFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 833 ~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+.+.+|++++|. +|+++..|+++
T Consensus 239 ~~~~adri~vl~-~G~i~~~g~~~ 261 (320)
T PRK13631 239 VLEVADEVIVMD-KGKILKTGTPY 261 (320)
T ss_pred HHHhCCEEEEEE-CCEEEEeCCHH
Confidence 668899999998 59999999864
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=336.69 Aligned_cols=207 Identities=25% Similarity=0.388 Sum_probs=174.2
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (213)
T cd03262 2 EIKNLHKSFG--------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLT 65 (213)
T ss_pred EEEEEEEEEC--------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECC
Confidence 5788888773 24699999999999999999999999999999999998876 4899999998763
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 698 Q-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 698 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
. ...++.++|++|++.+++.+|+.||+.+...... ....++..++++++++.+++.+..++.+ .+|||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 138 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSG 138 (213)
T ss_pred ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCH
Confidence 2 1245679999999999999999999988643111 1223334556788999999987666654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++
T Consensus 139 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~-~g~i 213 (213)
T cd03262 139 GQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMD-DGRI 213 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCcC
Confidence 9999999999999999999999999999999999999999999877999999999985 5667899999997 4653
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=336.38 Aligned_cols=209 Identities=23% Similarity=0.300 Sum_probs=175.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 l~~~~l~~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i 66 (222)
T PRK10908 2 IRFEHVSKAYL-------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDI 66 (222)
T ss_pred EEEEeeEEEec-------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 57889988773 124699999999999999999999999999999999999876 489999999875
Q ss_pred cc---c---cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQ---E---TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~---~---~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. . ..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+++.+..++.+ ..|
T Consensus 67 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 138 (222)
T PRK10908 67 TRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQL 138 (222)
T ss_pred ccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhC
Confidence 32 1 13567999999998888999999998865432 1223333456778899999987666553 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++...+|++++|. +|+++
T Consensus 139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~ 216 (222)
T PRK10908 139 SGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLS-DGHLH 216 (222)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEc
Confidence 999999999999999999999999999999999999999999999877999999999985 5667789999997 58875
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=343.17 Aligned_cols=216 Identities=23% Similarity=0.378 Sum_probs=182.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~ 66 (241)
T PRK10895 3 TLTAKNLAKAYK--------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDED 66 (241)
T ss_pred eEEEeCcEEEeC--------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 367889888773 24699999999999999999999999999999999998876 48999999987
Q ss_pred Cccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.... ..++.++|++|++.+++.+||.||+.+...... ....++..++++++++.+++.+..+... +.||
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (241)
T PRK10895 67 ISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLS 139 (241)
T ss_pred CCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCC
Confidence 5421 134579999999999999999999987643221 1222334556788999999987666553 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|. +|++++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~-~G~i~~ 217 (241)
T PRK10895 140 GGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVS-QGHLIA 217 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEe-CCeEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 6778899999997 699999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|+++
T Consensus 218 ~~~~~ 222 (241)
T PRK10895 218 HGTPT 222 (241)
T ss_pred eCCHH
Confidence 88763
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=339.18 Aligned_cols=216 Identities=25% Similarity=0.344 Sum_probs=173.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.. .+...+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|+++
T Consensus 2 l~~~~v~~~~~~~----------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 69 (228)
T cd03257 2 LEVKNLSVSFPTG----------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDL 69 (228)
T ss_pred eEEEeeeEeccCC----------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 5688998877421 0113699999999999999999999999999999999999876 489999999876
Q ss_pred cc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHH-HHHHHHHcCCC-ccccccccCCC
Q 000937 697 IQ------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADC-VNHVLKTIELD-GIKESLVGIPG 766 (1218)
Q Consensus 697 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~-~~~~~~~~~~~ 766 (1218)
.. ...++.++|++|++ .+++.+||+||+.+....... . ......+. ++++++.+++. +..+..+
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 143 (228)
T cd03257 70 LKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKKEARKEAVLLLLVGVGLPEEVLNRYP---- 143 (228)
T ss_pred cccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHHHHHHHHHHHHHHHCCCChhHhhCCc----
Confidence 42 13456799999998 466789999999876543211 1 11112222 35788889885 4555543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 144 -~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~- 220 (228)
T cd03257 144 -HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMY- 220 (228)
T ss_pred -hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEe-
Confidence 479999999999999999999999999999999999999999999999876 899999999985 5566899999997
Q ss_pred CCEEEEEc
Q 000937 846 GGRIIYSG 853 (1218)
Q Consensus 846 ~G~~~~~g 853 (1218)
+|+++..|
T Consensus 221 ~G~i~~~g 228 (228)
T cd03257 221 AGKIVEEG 228 (228)
T ss_pred CCEEEecC
Confidence 58987654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=335.54 Aligned_cols=209 Identities=31% Similarity=0.506 Sum_probs=175.7
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+++|+|+++++| +++|+||||||||||+++|+|+.++ .+|+|.++|.+.
T Consensus 1 i~~~~~~~~~~--------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 63 (211)
T cd03264 1 LQLENLTKRYG--------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDV 63 (211)
T ss_pred CEEEEEEEEEC--------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCcc
Confidence 35788888773 236999999999999 9999999999999999999998876 489999999875
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.++|++|++.+++.+||.||+.+....+. ....+..+.++++++.+++.+..++.+ .+|||||
T Consensus 64 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 135 (211)
T cd03264 64 LKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGM 135 (211)
T ss_pred ccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHH
Confidence 32 2235679999999999999999999988654331 122333456788999999987766654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|. +|+++..|
T Consensus 136 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~-~g~i~~~g 211 (211)
T cd03264 136 RRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999999999999999999976 599999999975 4567899999997 58988654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=335.84 Aligned_cols=211 Identities=23% Similarity=0.354 Sum_probs=174.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 l~~~~v~~~~~~~----------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (221)
T TIGR02211 2 LKCENLGKRYQEG----------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSL 69 (221)
T ss_pred EEEEeeeEEccCC----------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEh
Confidence 5678888887421 0124699999999999999999999999999999999998876 489999999875
Q ss_pred ccc---c---cc-ceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000937 697 IQE---T---FV-RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769 (1218)
Q Consensus 697 ~~~---~---~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 769 (1218)
... . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+.+.++++.+|+.+..++.+ ..
T Consensus 70 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 141 (221)
T TIGR02211 70 SKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SE 141 (221)
T ss_pred hhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hh
Confidence 321 1 12 569999999988889999999988654321 122333456788999999987766654 47
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ . .+.+|++++|. +|+
T Consensus 142 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~-~~~~d~v~~l~-~G~ 218 (221)
T TIGR02211 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-L-AKKLDRVLEMK-DGQ 218 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEEEe-CCE
Confidence 9999999999999999999999999999999999999999999999764 899999999975 3 45689999997 587
Q ss_pred EE
Q 000937 849 II 850 (1218)
Q Consensus 849 ~~ 850 (1218)
++
T Consensus 219 i~ 220 (221)
T TIGR02211 219 LF 220 (221)
T ss_pred ec
Confidence 64
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=341.83 Aligned_cols=214 Identities=24% Similarity=0.325 Sum_probs=178.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVNG 693 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g 693 (1218)
++++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|..+|. ..+|+|.++|
T Consensus 2 l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g 67 (247)
T TIGR00972 2 IEIENLNLFYG--------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG 67 (247)
T ss_pred EEEEEEEEEEC--------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECC
Confidence 57889988773 236999999999999999999999999999999999987652 1279999999
Q ss_pred EeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC----ccccccccC
Q 000937 694 YPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD----GIKESLVGI 764 (1218)
Q Consensus 694 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 764 (1218)
++... ...++.++|++|+..+++ +|+.||+.+....+. .....+..+.++++++.+++. +..+..
T Consensus 68 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 141 (247)
T TIGR00972 68 QDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS--- 141 (247)
T ss_pred EEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC---
Confidence 87642 123567999999988888 999999988654321 112334445678899999997 444444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 142 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 217 (247)
T TIGR00972 142 --ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFY 217 (247)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEE
Confidence 358999999999999999999999999999999999999999999999976 489999999975 5677899999998
Q ss_pred cCCEEEEEcCC
Q 000937 845 TGGRIIYSGPL 855 (1218)
Q Consensus 845 ~~G~~~~~g~~ 855 (1218)
+|+++..|++
T Consensus 218 -~G~i~~~~~~ 227 (247)
T TIGR00972 218 -DGELVEYGPT 227 (247)
T ss_pred -CCEEEEeCCH
Confidence 5999999875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=347.60 Aligned_cols=217 Identities=21% Similarity=0.332 Sum_probs=183.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. +.+.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 70 (279)
T PRK13650 4 IIEVKNLTFKYKED-----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDL 70 (279)
T ss_pred eEEEEeEEEEcCCC-----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 47899999988421 124599999999999999999999999999999999999877 48999999998
Q ss_pred Ccc---ccccceEEEeccCC-CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTD-IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
... ...++.++|++|++ ..++..||+||+.|+.... ....++..++++++++.+||.+..+..+ .+||
T Consensus 71 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (279)
T PRK13650 71 LTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLS 142 (279)
T ss_pred CCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 642 23456799999997 3677889999998865322 2234445567889999999987777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|++++|. +|+++
T Consensus 143 gGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~-~G~i~ 219 (279)
T PRK13650 143 GGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK-NGQVE 219 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999875 999999999975 34 6799999997 69999
Q ss_pred EEcCCC
Q 000937 851 YSGPLG 856 (1218)
Q Consensus 851 ~~g~~~ 856 (1218)
..|+++
T Consensus 220 ~~g~~~ 225 (279)
T PRK13650 220 STSTPR 225 (279)
T ss_pred EECCHH
Confidence 999863
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=342.85 Aligned_cols=215 Identities=23% Similarity=0.305 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~ 68 (257)
T PRK10619 5 KLNVIDLHKRYG--------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQT 68 (257)
T ss_pred cEEEeeeEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEE
Confidence 478999999873 24699999999999999999999999999999999999876 48999999987
Q ss_pred Ccc----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-
Q 000937 696 KIQ----------------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK- 758 (1218)
Q Consensus 696 ~~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~- 758 (1218)
... ..+++.++|++|++.+++.+||+||+.++..... ........+++.++++.+|+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 69 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred cccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 531 1235679999999999999999999987542111 122334456678899999997653
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhc
Q 000937 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFD 838 (1218)
Q Consensus 759 ~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d 838 (1218)
+.. +.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|
T Consensus 147 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 443 3589999999999999999999999999999999999999999999999877999999999975 5666799
Q ss_pred eEEEEecCCEEEEEcCC
Q 000937 839 ELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 839 ~~~~l~~~G~~~~~g~~ 855 (1218)
+++++. +|++++.|+.
T Consensus 221 ~i~~l~-~G~i~~~~~~ 236 (257)
T PRK10619 221 HVIFLH-QGKIEEEGAP 236 (257)
T ss_pred EEEEEE-CCEEEEeCCH
Confidence 999997 5999998875
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=341.09 Aligned_cols=213 Identities=21% Similarity=0.355 Sum_probs=178.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+
T Consensus 5 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~ 68 (237)
T PRK11614 5 MLSFDKVSAHYG--------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKD 68 (237)
T ss_pred EEEEEeEEEeeC--------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEe
Confidence 478999998873 24699999999999999999999999999999999999876 48999999987
Q ss_pred Cccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHc-CCCccccccccCCCCCCC
Q 000937 696 KIQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI-ELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 696 ~~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~L 770 (1218)
.... ..++.++|++|+..+++.+||.||+.++.... ......+.++++++.+ ++.+..+.. +..|
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~L 138 (237)
T PRK11614 69 ITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTM 138 (237)
T ss_pred cCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhC
Confidence 5431 13457999999999999999999998754211 1122234466677777 465544443 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 139 S~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~ 216 (237)
T PRK11614 139 SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLE-NGHVV 216 (237)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEe-CCEEE
Confidence 999999999999999999999999999999999999999999999878999999999975 5788999999998 59999
Q ss_pred EEcCCC
Q 000937 851 YSGPLG 856 (1218)
Q Consensus 851 ~~g~~~ 856 (1218)
+.|+++
T Consensus 217 ~~~~~~ 222 (237)
T PRK11614 217 LEDTGD 222 (237)
T ss_pred eeCCHH
Confidence 999864
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=336.85 Aligned_cols=212 Identities=26% Similarity=0.449 Sum_probs=178.2
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++
T Consensus 2 l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i 65 (236)
T TIGR03864 2 LEVAGLSFAYG--------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDL 65 (236)
T ss_pred EEEEeeEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEc
Confidence 56788888773 24699999999999999999999999999999999999876 489999999875
Q ss_pred ccc--cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQE--TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~~--~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
... ...+.++|++|++.+++.+|++||+.+....+ ........+.++++++.+|+.+..++.+ ..|||||
T Consensus 66 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 137 (236)
T TIGR03864 66 RRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGH 137 (236)
T ss_pred ccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHH
Confidence 321 22356999999988888999999998765432 1223334456788999999987766654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|++||+++ ++ ..+|++++|. +|+++..|
T Consensus 138 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~-~G~i~~~~ 214 (236)
T TIGR03864 138 RRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLH-RGRVLADG 214 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEe-CCeEEEeC
Confidence 9999999999999999999999999999999999999999975 5899999999986 34 4699999997 58999888
Q ss_pred CC
Q 000937 854 PL 855 (1218)
Q Consensus 854 ~~ 855 (1218)
++
T Consensus 215 ~~ 216 (236)
T TIGR03864 215 AA 216 (236)
T ss_pred CH
Confidence 75
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=301.46 Aligned_cols=213 Identities=25% Similarity=0.393 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.++++.++... .+...||++|++.|++||-+||+|||||||||||-+++|+..+. +|+|.+.|++
T Consensus 6 ii~~~~l~ktvg~~----------~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s--sGeV~l~G~~ 73 (228)
T COG4181 6 IIEVHHLSKTVGQG----------EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQP 73 (228)
T ss_pred eeehhhhhhhhcCC----------CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC--CceEEEcCcc
Confidence 35677777766432 24568999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---c---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCC
Q 000937 696 KIQ---E---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~---~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 768 (1218)
... + . ..+.+|+|+|...+.|+||..||+...+.++... .....+.+.+.++.+||.+..+... .
T Consensus 74 L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~HyP-----~ 145 (228)
T COG4181 74 LHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHYP-----A 145 (228)
T ss_pred hhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccCc-----c
Confidence 532 1 1 3467999999999999999999999988776421 2233456788999999987766653 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+|||||+|||+||||++..|++||.||||-+||..+..+|.++|-.+.+ .|.|.|++|||| .+...|+|.+-|. .|
T Consensus 146 qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~-~G 222 (228)
T COG4181 146 QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLR-SG 222 (228)
T ss_pred ccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeee-cc
Confidence 8999999999999999999999999999999999999999999999865 499999999997 4688999999998 58
Q ss_pred EEEE
Q 000937 848 RIIY 851 (1218)
Q Consensus 848 ~~~~ 851 (1218)
+++.
T Consensus 223 ~l~~ 226 (228)
T COG4181 223 RLVE 226 (228)
T ss_pred eecc
Confidence 8864
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=346.12 Aligned_cols=216 Identities=25% Similarity=0.372 Sum_probs=182.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~l~~~~l~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~ 69 (283)
T PRK13636 5 ILKVEELNYNYSD-------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKP 69 (283)
T ss_pred eEEEEeEEEEeCC-------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEE
Confidence 5889999998831 24699999999999999999999999999999999999876 48999999988
Q ss_pred Ccc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000937 696 KIQ-----ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769 (1218)
Q Consensus 696 ~~~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 769 (1218)
... ...++.++|++|++. .+...||+||+.+..... ..+..+..++++++++.++|.+..++.. +.
T Consensus 70 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 141 (283)
T PRK13636 70 IDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HC 141 (283)
T ss_pred CCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----cc
Confidence 631 234567999999863 345689999998864322 1233444567889999999988777664 58
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+
T Consensus 142 LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~-~G~ 219 (283)
T PRK13636 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMK-EGR 219 (283)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999875 999999999975 4566899999997 589
Q ss_pred EEEEcCCC
Q 000937 849 IIYSGPLG 856 (1218)
Q Consensus 849 ~~~~g~~~ 856 (1218)
+++.|+++
T Consensus 220 i~~~g~~~ 227 (283)
T PRK13636 220 VILQGNPK 227 (283)
T ss_pred EEEeCCHH
Confidence 99999864
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=347.17 Aligned_cols=219 Identities=23% Similarity=0.355 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+++|+|..+|. +|+|.++|.+
T Consensus 2 ~l~~~~l~~~y~~~~---------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~ 70 (286)
T PRK13646 2 TIRFDNVSYTYQKGT---------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT--TGTVTVDDIT 70 (286)
T ss_pred EEEEEEEEEEECCCC---------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEE
Confidence 378999999884210 01246999999999999999999999999999999999998774 8999999988
Q ss_pred Ccc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 696 KIQ-------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 696 ~~~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
+.. ...++.+||++|++ .+++ .||.||+.|+.... .....+..++++++++.+||. +..++.
T Consensus 71 i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~---- 142 (286)
T PRK13646 71 ITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS---- 142 (286)
T ss_pred CccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC----
Confidence 632 13456799999985 3444 59999999865322 123344556788999999996 555654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 143 -~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~ 220 (286)
T PRK13646 143 -PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMK 220 (286)
T ss_pred -cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 3589999999999999999999999999999999999999999999999764 999999999975 5667899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|++.
T Consensus 221 -~G~i~~~g~~~ 231 (286)
T PRK13646 221 -EGSIVSQTSPK 231 (286)
T ss_pred -CCEEEEECCHH
Confidence 59999999863
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=335.11 Aligned_cols=209 Identities=22% Similarity=0.375 Sum_probs=178.4
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+..
T Consensus 2 ~l~~v~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~ 65 (223)
T TIGR03740 2 ETKNLSKRFG--------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWT 65 (223)
T ss_pred EEEeEEEEEC--------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecc
Confidence 5778887763 24699999999999999999999999999999999998876 4899999998754
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000937 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777 (1218)
Q Consensus 698 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqR 777 (1218)
... .+.++|++|++.+++.+|++||+.+....+. . ..+.+.++++.+++.+..+..+ ..||||||||
T Consensus 66 ~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 132 (223)
T TIGR03740 66 RKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---L----PDSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQR 132 (223)
T ss_pred ccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---C----CHHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHH
Confidence 322 2568999999988999999999987654321 1 1235678899999987776654 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 778 LTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 778 v~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..|++.+
T Consensus 133 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~~ 210 (223)
T TIGR03740 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIIS-EGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEe-CCEEEEecChhh
Confidence 99999999999999999999999999999999999999877999999999985 5667899999997 599999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=339.36 Aligned_cols=215 Identities=23% Similarity=0.344 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~ 65 (242)
T PRK11124 2 SIQLNGINCFYG--------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNH 65 (242)
T ss_pred EEEEEeeEEEEC--------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEe
Confidence 367899998873 24699999999999999999999999999999999999876 48999999987
Q ss_pred Cc------c---ccccceEEEeccCCCCCCCCCHHHHHHHHH-hhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 696 KI------Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSA-WLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 696 ~~------~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
.. . ...++.++|++|++.+++.+||.||+.+.. ... .....+..+.+.++++.+|+.+..+..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~--- 139 (242)
T PRK11124 66 FDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP--- 139 (242)
T ss_pred cccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh---
Confidence 52 0 123457999999999999999999997532 211 1122333456788999999987766654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+.+|++++|.
T Consensus 140 --~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~- 215 (242)
T PRK11124 140 --LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYME- 215 (242)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-
Confidence 479999999999999999999999999999999999999999999999877999999999985 5567899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 216 ~g~i~~~~~~~ 226 (242)
T PRK11124 216 NGHIVEQGDAS 226 (242)
T ss_pred CCEEEEeCCHH
Confidence 59999988753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=336.06 Aligned_cols=199 Identities=26% Similarity=0.447 Sum_probs=164.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCC--CCCCH
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHS--PHITI 720 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~lTv 720 (1218)
+.+++|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|++.. ..++.++|++|++.+. +.+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 4699999999999999999999999999999999998876 4899999998753 2456799999997663 34899
Q ss_pred HHHHHHHHhhccCC-CCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000937 721 EESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsg 799 (1218)
+||+.+........ ....+...++++++++.+++.+..++.+ .+||||||||++||++|+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99998754321100 0112233456788999999987666654 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 800 LDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 800 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +| +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLN-RT-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEc-Cc-EeecC
Confidence 9999999999999999878999999999975 5667899999996 45 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=349.78 Aligned_cols=231 Identities=20% Similarity=0.258 Sum_probs=185.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++||++.++........ +...+...+++|||++|++||+++|+|+||||||||+++|+|+.++ .+|+|.++|+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~-~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWF-WQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccc-cccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCE
Confidence 458999999988532110000 0001235799999999999999999999999999999999999876 4899999999
Q ss_pred eCccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 695 PKIQE------TFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 695 ~~~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
++... ..++.++||+|++ .++|.+||.||+.+...... ...+.++..++++++++.+++. +..++.
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~---- 158 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY---- 158 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC----
Confidence 86421 2356799999997 57889999999988654321 1133445566788999999994 344544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
+.+|||||||||+||+||+.+|++|++||||+|||+.++.+++++|+++.++ |.|+|++|||++ .+.+.+|++++|.
T Consensus 159 -p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~ 236 (331)
T PRK15079 159 -PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMY 236 (331)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 3589999999999999999999999999999999999999999999999765 999999999975 4667899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 237 -~G~ive~g~~~ 247 (331)
T PRK15079 237 -LGHAVELGTYD 247 (331)
T ss_pred -CCEEEEEcCHH
Confidence 59999999864
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=346.17 Aligned_cols=220 Identities=22% Similarity=0.327 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 2 ~i~~~~l~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 70 (287)
T PRK13641 2 SIKFENVDYIYSPGT---------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYH 70 (287)
T ss_pred EEEEEEEEEEcCCCC---------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 467899998874210 0124699999999999999999999999999999999999887 48999999987
Q ss_pred Ccc-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCC
Q 000937 696 KIQ-------ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPG 766 (1218)
Q Consensus 696 ~~~-------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 766 (1218)
+.. ...++.++|++|++. .+..+||.||+.+..... ....++..++++++++.++|. +..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 143 (287)
T PRK13641 71 ITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP---- 143 (287)
T ss_pred CccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc----
Confidence 532 123457999999862 333589999998865332 123344456788999999996 5666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +
T Consensus 144 -~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~-~ 220 (287)
T PRK13641 144 -FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLE-H 220 (287)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 489999999999999999999999999999999999999999999999877999999999975 5678899999997 5
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|+++..|+++
T Consensus 221 G~i~~~g~~~ 230 (287)
T PRK13641 221 GKLIKHASPK 230 (287)
T ss_pred CEEEEeCCHH
Confidence 9999999864
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=334.54 Aligned_cols=194 Identities=28% Similarity=0.430 Sum_probs=163.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCC-CCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDI-HSPHI 718 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 718 (1218)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 4699999999999999999999999999999999998876 48999999987532 234567999999874 46679
Q ss_pred CHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
|++||+.+..... ........+.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++++|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998865322 1122333456788999999987666654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~ 211 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED-GK 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CC
Confidence 99999999999999999877999999999975 56667999999974 53
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=356.87 Aligned_cols=229 Identities=20% Similarity=0.284 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEecCchhh----hh-----c-cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 000937 616 TMVFQDLQYSIDTPLEMR----RR-----E-CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCF 685 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~----~~-----~-~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~ 685 (1218)
.++++|++..+....... .. . ....+...+|+|+|+++++||+++|+||||||||||+++|+|+.+| .
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~ 81 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--T 81 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--C
Confidence 477888887765432100 00 0 0011334689999999999999999999999999999999999877 4
Q ss_pred eeEEEECCEeCccc---c----ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc
Q 000937 686 KGEIKVNGYPKIQE---T----FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK 758 (1218)
Q Consensus 686 ~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 758 (1218)
+|+|.++|.++... . .++.++|++|+..+++++||+||+.+....+. ....+..++++++++.++|.+..
T Consensus 82 sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~ 158 (400)
T PRK10070 82 RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYA 158 (400)
T ss_pred CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhh
Confidence 89999999986421 1 13569999999999999999999998765431 22334456788899999998877
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhh
Q 000937 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESF 837 (1218)
Q Consensus 759 ~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~ 837 (1218)
++.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+
T Consensus 159 ~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~ 232 (400)
T PRK10070 159 HSYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIG 232 (400)
T ss_pred hcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhC
Confidence 7664 48999999999999999999999999999999999999999999999975 4899999999985 567889
Q ss_pred ceEEEEecCCEEEEEcCCC
Q 000937 838 DELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 838 d~~~~l~~~G~~~~~g~~~ 856 (1218)
|++++|. +|+++..|+++
T Consensus 233 Dri~vL~-~G~i~~~g~~~ 250 (400)
T PRK10070 233 DRIAIMQ-NGEVVQVGTPD 250 (400)
T ss_pred CEEEEEE-CCEEEecCCHH
Confidence 9999998 59999998764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=376.85 Aligned_cols=220 Identities=27% Similarity=0.419 Sum_probs=181.7
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
...++|+|++|++|.++ +.+||+|+|+.|++|+.+||+|||||||||++++|.++++| .+|+|++||
T Consensus 348 ~g~ief~nV~FsYPsRp-----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP--~~G~V~idG 414 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRP-----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP--TSGEVLIDG 414 (1228)
T ss_pred ccceEEEEEEecCCCCC-----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCceEEEcC
Confidence 35789999999998642 45799999999999999999999999999999999999988 499999999
Q ss_pred EeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHH---HHHHHHHcCCCccccccccCCCC
Q 000937 694 YPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADC---VNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 694 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~---~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
.++.. +..+..+|.|.|+|.+| ..|++||+.|+. ++.+.++..+. ++..--...|.+-.|+.+|..++
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~-----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~ 488 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGK-----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV 488 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCC-----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence 98643 34567899999999765 589999998852 12222222111 11111233566778899998776
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+||||||||++|||||+.||+|||||||||+||+++++.+.+.|+++. +|+|.|+++|+++ ..+.+|+++++. +|
T Consensus 489 -qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS--tIrnaD~I~v~~-~G 563 (1228)
T KOG0055|consen 489 -QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS--TIRNADKIAVME-EG 563 (1228)
T ss_pred -CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh--hhhccCEEEEEE-CC
Confidence 499999999999999999999999999999999999999999999864 5999999999985 467799999998 69
Q ss_pred EEEEEcCCCC
Q 000937 848 RIIYSGPLGN 857 (1218)
Q Consensus 848 ~~~~~g~~~~ 857 (1218)
++++.|+.++
T Consensus 564 ~IvE~G~h~E 573 (1228)
T KOG0055|consen 564 KIVEQGTHDE 573 (1228)
T ss_pred EEEEecCHHH
Confidence 9999999864
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=341.80 Aligned_cols=218 Identities=20% Similarity=0.261 Sum_probs=180.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+
T Consensus 5 ~l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 68 (255)
T PRK11300 5 LLSVSGLMMRFG--------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQH 68 (255)
T ss_pred eEEEeeEEEEEC--------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEE
Confidence 478999998873 24699999999999999999999999999999999999876 48999999987
Q ss_pred Cccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccC----------CCC--ChhhHHHHHHHHHHHcCCCcccc
Q 000937 696 KIQE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA----------PQI--NSKTKADCVNHVLKTIELDGIKE 759 (1218)
Q Consensus 696 ~~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----------~~~--~~~~~~~~~~~~l~~l~l~~~~~ 759 (1218)
.... . .+..++|++|++.+++.+||+||+.++...... ... ...+..+.++++++.+|+.+..+
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 148 (255)
T PRK11300 69 IEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHAN 148 (255)
T ss_pred CCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhh
Confidence 5421 1 233589999999999999999999986431110 000 11123346778889999987666
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhc
Q 000937 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFD 838 (1218)
Q Consensus 760 ~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d 838 (1218)
..+ ++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|
T Consensus 149 ~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d 222 (255)
T PRK11300 149 RQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISD 222 (255)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCC
Confidence 654 479999999999999999999999999999999999999999999999876 899999999975 5667899
Q ss_pred eEEEEecCCEEEEEcCCC
Q 000937 839 ELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 839 ~~~~l~~~G~~~~~g~~~ 856 (1218)
+++++. +|++++.|+++
T Consensus 223 ~i~~l~-~g~i~~~~~~~ 239 (255)
T PRK11300 223 RIYVVN-QGTPLANGTPE 239 (255)
T ss_pred EEEEEE-CCeEEecCCHH
Confidence 999997 69999988864
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=340.79 Aligned_cols=214 Identities=27% Similarity=0.424 Sum_probs=179.9
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.
T Consensus 3 l~~~~l~~~~~--------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~ 66 (258)
T PRK13548 3 LEARNLSVRLG--------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPL 66 (258)
T ss_pred EEEEeEEEEeC--------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEc
Confidence 67899998873 24699999999999999999999999999999999998776 489999999875
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
.. ...++.++|++|++.+++.+||+||+.+..... ....+...+.++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 138 (258)
T PRK13548 67 ADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGG 138 (258)
T ss_pred ccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHH
Confidence 32 223456899999988888899999998854221 1112233456788999999987767664 479999
Q ss_pred HHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 774 QRKRLTIGVELV------ANPSIIFMDEPTTGLDARAAAIVMRAVKNVA-DTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 774 erqRv~ia~~L~------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
|||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||+++ ++...+|++++|. +
T Consensus 139 e~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~ 216 (258)
T PRK13548 139 EQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLH-Q 216 (258)
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEE-C
Confidence 999999999999 5999999999999999999999999999997 56999999999975 5667899999998 5
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|+++..|+++
T Consensus 217 G~i~~~~~~~ 226 (258)
T PRK13548 217 GRLVADGTPA 226 (258)
T ss_pred CEEEeeCCHH
Confidence 8999988764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=339.38 Aligned_cols=214 Identities=24% Similarity=0.331 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.++
T Consensus 1 i~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i 64 (252)
T TIGR03005 1 VRFSDVTKRFG--------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQL 64 (252)
T ss_pred CEEEEEEEEeC--------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 35788988773 24699999999999999999999999999999999998876 489999999875
Q ss_pred cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccc
Q 000937 697 IQ----------------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760 (1218)
Q Consensus 697 ~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 760 (1218)
.. ...++.++|++|++.+++..|+.||+.++..... ........+.++++++.+++.+..+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 142 (252)
T TIGR03005 65 YHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADH 142 (252)
T ss_pred cccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhc
Confidence 31 1235679999999999999999999987532111 12233344567889999999876665
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhce
Q 000937 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 761 ~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
.. .+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++...+|+
T Consensus 143 ~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 216 (252)
T TIGR03005 143 MP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADR 216 (252)
T ss_pred Ch-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCE
Confidence 53 579999999999999999999999999999999999999999999999875 899999999985 56678999
Q ss_pred EEEEecCCEEEEEcCC
Q 000937 840 LILLKTGGRIIYSGPL 855 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~ 855 (1218)
+++|. +|++++.|+.
T Consensus 217 i~~l~-~G~i~~~g~~ 231 (252)
T TIGR03005 217 VCFFD-KGRIVEQGKP 231 (252)
T ss_pred EEEEE-CCEEEEeCCH
Confidence 99997 6999998875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=339.77 Aligned_cols=215 Identities=24% Similarity=0.300 Sum_probs=177.3
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.+
T Consensus 11 ~~l~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~ 76 (258)
T PRK14268 11 PQIKVENLNLWYG--------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSI 76 (258)
T ss_pred eeEEEeeeEEEeC--------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEE
Confidence 4588999998773 246999999999999999999999999999999999987641 25899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 762 (1218)
+|.++.. ...++.++|++|++.+++ +|++||+.+..... ....+...+.++++++.+++.+ ..++.
T Consensus 77 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 151 (258)
T PRK14268 77 EGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP- 151 (258)
T ss_pred CCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-
Confidence 9987532 123567999999988887 89999999865332 1223333456788899988842 23333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++
T Consensus 152 ----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~ 225 (258)
T PRK14268 152 ----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGF 225 (258)
T ss_pred ----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEE
Confidence 358999999999999999999999999999999999999999999999864 899999999975 56678999999
Q ss_pred EecCCEEEEEcCC
Q 000937 843 LKTGGRIIYSGPL 855 (1218)
Q Consensus 843 l~~~G~~~~~g~~ 855 (1218)
|. +|++++.|++
T Consensus 226 l~-~G~i~~~~~~ 237 (258)
T PRK14268 226 FL-MGELIEFGQT 237 (258)
T ss_pred EE-CCEEEEeCCH
Confidence 97 5999999875
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=338.27 Aligned_cols=217 Identities=24% Similarity=0.286 Sum_probs=175.8
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECCE
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCFKGEIKVNGY 694 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~--~~~~~~G~i~~~g~ 694 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|+
T Consensus 1 l~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~G~i~~~g~ 64 (243)
T TIGR01978 1 LKIKDLHVSVE--------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV--TSGTILFKGQ 64 (243)
T ss_pred CeEeeEEEEEC--------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CcceEEECCE
Confidence 35788888773 246999999999999999999999999999999999984 34 5899999998
Q ss_pred eCccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC----CCChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 695 PKIQE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP----QINSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 695 ~~~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
+.... . .+..++|++|++.+++.+|++|++.+........ .....+..++++++++.+++. +..++.++
T Consensus 65 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 142 (243)
T TIGR01978 65 DLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN-- 142 (243)
T ss_pred ecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc--
Confidence 75421 1 2234899999999999999999998764322110 011222345678899999997 34554432
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh-hceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFES-FDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~ 844 (1218)
.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|.
T Consensus 143 --~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~ 219 (243)
T TIGR01978 143 --EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLL 219 (243)
T ss_pred --cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEe
Confidence 249999999999999999999999999999999999999999999999878999999999975 45555 79999997
Q ss_pred cCCEEEEEcCC
Q 000937 845 TGGRIIYSGPL 855 (1218)
Q Consensus 845 ~~G~~~~~g~~ 855 (1218)
+|++++.|++
T Consensus 220 -~G~i~~~g~~ 229 (243)
T TIGR01978 220 -DGRIVKSGDV 229 (243)
T ss_pred -CCEEEEecCH
Confidence 6999999876
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=342.71 Aligned_cols=219 Identities=24% Similarity=0.384 Sum_probs=181.8
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 10 ~~l~i~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~ 73 (265)
T PRK10575 10 TTFALRNVSFRVP--------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQ 73 (265)
T ss_pred ceEEEeeEEEEEC--------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCE
Confidence 3588999998873 24699999999999999999999999999999999998876 4899999998
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC-CCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
+... ...++.++|++|+..+++.+|+.||+.+........ ........++++++++.+++.+..++.+ .+|
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 148 (265)
T PRK10575 74 PLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSL 148 (265)
T ss_pred ehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccC
Confidence 7532 233567999999988888999999998753211000 0111223456788999999987666664 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++
T Consensus 149 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~-~G~i 226 (265)
T PRK10575 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALR-GGEM 226 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeE
Confidence 999999999999999999999999999999999999999999999765 899999999985 5678899999997 5999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
+..|+.+
T Consensus 227 ~~~~~~~ 233 (265)
T PRK10575 227 IAQGTPA 233 (265)
T ss_pred EEecCHH
Confidence 9998764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=338.96 Aligned_cols=216 Identities=22% Similarity=0.258 Sum_probs=177.1
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.+
T Consensus 6 ~~l~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 71 (254)
T PRK14273 6 AIIETENLNLFYT--------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY 71 (254)
T ss_pred ceEEEeeeEEEeC--------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEE
Confidence 3588999999873 236999999999999999999999999999999999987652 24899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC----ccccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD----GIKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~ 762 (1218)
+|+++.. ...++.++|++|++.+++ +||+||+.+...... ........+.++++++.+++. +..++.
T Consensus 72 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 147 (254)
T PRK14273 72 EGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN- 147 (254)
T ss_pred CCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC-
Confidence 9987531 124567999999988774 899999988653321 112223345677888888873 233443
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|++++
T Consensus 148 ----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~ 221 (254)
T PRK14273 148 ----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAF 221 (254)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 35899999999999999999999999999999999999999999999996 4799999999985 56678999999
Q ss_pred EecCCEEEEEcCC
Q 000937 843 LKTGGRIIYSGPL 855 (1218)
Q Consensus 843 l~~~G~~~~~g~~ 855 (1218)
|. +|+++..|++
T Consensus 222 l~-~G~i~~~g~~ 233 (254)
T PRK14273 222 FL-NGCIEEESST 233 (254)
T ss_pred EE-CCEEEEeCCH
Confidence 97 5999999875
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=342.15 Aligned_cols=214 Identities=23% Similarity=0.341 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 66 (274)
T PRK13644 2 IRLENVSYSYP-------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDT 66 (274)
T ss_pred EEEEEEEEEcC-------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEC
Confidence 57889988773 123599999999999999999999999999999999998876 489999999886
Q ss_pred cc----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 697 IQ----ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 697 ~~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.. ...++.++|++|++. .++..|+.||+.+..... .....+..+.++++++.+++.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS 138 (274)
T PRK13644 67 GDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLS 138 (274)
T ss_pred CccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCC
Confidence 32 223567999999875 466789999998865322 1233444566888999999987777654 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++ +.+|+++++. +|++++
T Consensus 139 ~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~-~G~i~~ 215 (274)
T PRK13644 139 GGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMD-RGKIVL 215 (274)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999877999999999985 44 6799999997 599999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|+++
T Consensus 216 ~g~~~ 220 (274)
T PRK13644 216 EGEPE 220 (274)
T ss_pred ECCHH
Confidence 99863
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=343.37 Aligned_cols=215 Identities=24% Similarity=0.379 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|++.
T Consensus 4 l~~~~l~~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (277)
T PRK13652 4 IETRDLCYSYSG-------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPI 68 (277)
T ss_pred EEEEEEEEEeCC-------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 678999988731 23599999999999999999999999999999999998876 489999999875
Q ss_pred cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 697 IQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
.. ...++.++|++|++. .+...||.||+.+..... ....+...++++++++.+++.+..++.+ +.|||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 140 (277)
T PRK13652 69 TKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSG 140 (277)
T ss_pred CcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCH
Confidence 42 234567899999963 344689999998765321 1233344556789999999987777664 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 141 Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~-~G~i~~ 218 (277)
T PRK13652 141 GEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMD-KGRIVA 218 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999875 899999999985 5678899999998 589999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
.|+++
T Consensus 219 ~g~~~ 223 (277)
T PRK13652 219 YGTVE 223 (277)
T ss_pred ECCHH
Confidence 99864
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=337.69 Aligned_cols=217 Identities=27% Similarity=0.326 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 68 (250)
T PRK14247 3 KIEIRDLKVSFG--------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLD 68 (250)
T ss_pred eEEEEeeEEEEC--------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEEC
Confidence 378899998773 246999999999999999999999999999999999987642 358999999
Q ss_pred CEeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccccCC
Q 000937 693 GYPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVGIP 765 (1218)
Q Consensus 693 g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 765 (1218)
|.++.. ...++.++|++|++.+++.+||.||+.+....+.. .....+..+.++++++.+++.+ ..++.
T Consensus 69 g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 143 (250)
T PRK14247 69 GQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP---- 143 (250)
T ss_pred CEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC----
Confidence 987532 23456799999999888999999999886533211 0122333456788999999854 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||+++ ++.+.+|++++|.
T Consensus 144 -~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~- 219 (250)
T PRK14247 144 -AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLY- 219 (250)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEE-
Confidence 358999999999999999999999999999999999999999999999864 899999999985 5667899999997
Q ss_pred CCEEEEEcCC
Q 000937 846 GGRIIYSGPL 855 (1218)
Q Consensus 846 ~G~~~~~g~~ 855 (1218)
+|+++..|++
T Consensus 220 ~G~i~~~g~~ 229 (250)
T PRK14247 220 KGQIVEWGPT 229 (250)
T ss_pred CCeEEEECCH
Confidence 6999999875
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=336.53 Aligned_cols=216 Identities=25% Similarity=0.366 Sum_probs=179.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++|.+.
T Consensus 3 i~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~ 66 (242)
T TIGR03411 3 LYLEGLSVSFD--------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD--EGSVLFGGTDL 66 (242)
T ss_pred EEEEeeEEEcC--------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCeec
Confidence 67889988773 246999999999999999999999999999999999988764 89999999875
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccC--C---CCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 697 IQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA--P---QINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 697 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
... ..++.++|++|++.+++.+||+||+.+....... . ....+...++++++++.+++.+..+..+
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (242)
T TIGR03411 67 TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA----- 141 (242)
T ss_pred CCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 321 1234699999999999999999999886432100 0 0112233456888999999987766654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|
T Consensus 142 ~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g 218 (242)
T TIGR03411 142 GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLH-QG 218 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 47999999999999999999999999999999999999999999999976 799999999975 5667899999997 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
+++..|+.+
T Consensus 219 ~~~~~~~~~ 227 (242)
T TIGR03411 219 SVLAEGSLD 227 (242)
T ss_pred eEEeeCCHH
Confidence 999988753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=330.84 Aligned_cols=208 Identities=25% Similarity=0.393 Sum_probs=172.5
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
.++|+++.++ ++. .|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.++.
T Consensus 2 ~~~~l~~~~~--------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~ 63 (211)
T cd03298 2 RLDKIRFSYG--------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVT 63 (211)
T ss_pred EEEeEEEEeC--------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 5788888763 122 299999999999999999999999999999999876 4899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 QE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.. ..++.++|++|++.+++.+|++||+.+....+. .. ....+++++++++.+++.+..++.+ .+|||||||
T Consensus 64 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (211)
T cd03298 64 AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQ 135 (211)
T ss_pred cCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHH
Confidence 31 234679999999999999999999987542111 11 1233456788999999987777654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|
T Consensus 136 rv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 211 (211)
T cd03298 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLD-NGRIAAQG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEE-CCEEeecC
Confidence 999999999999999999999999999999999999999764 899999999975 5667899999997 58987654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=340.79 Aligned_cols=218 Identities=24% Similarity=0.370 Sum_probs=181.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+.
T Consensus 3 l~~~~l~~~~~--------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (255)
T PRK11231 3 LRTENLTVGYG--------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPI 66 (255)
T ss_pred EEEEeEEEEEC--------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEh
Confidence 67889998773 24699999999999999999999999999999999998776 489999999875
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
.. ...++.++|++|+..+++.+|+.||+.++...... .........+.++++++.+++.+..++.. ..|||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 141 (255)
T PRK11231 67 SMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSG 141 (255)
T ss_pred HHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCH
Confidence 32 22345699999998888889999999875211000 01111233456788899999987767654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~ 219 (255)
T PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLA-NGHVMAQ 219 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEE-CCeEEEE
Confidence 9999999999999999999999999999999999999999999877999999999985 5778899999997 5899999
Q ss_pred cCCCC
Q 000937 853 GPLGN 857 (1218)
Q Consensus 853 g~~~~ 857 (1218)
|+.++
T Consensus 220 ~~~~~ 224 (255)
T PRK11231 220 GTPEE 224 (255)
T ss_pred cCHHH
Confidence 88643
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=342.33 Aligned_cols=216 Identities=23% Similarity=0.334 Sum_probs=182.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+|. +|+|.++|++
T Consensus 5 ~l~~~~l~~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~--~G~i~~~g~~ 70 (279)
T PRK13635 5 IIRVEHISFRYPD------------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE--AGTITVGGMV 70 (279)
T ss_pred eEEEEEEEEEeCC------------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEE
Confidence 4789999998741 1246999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+.. ...++.++|++|++. .++..||.||+.+..... ....++..++++++++.+||.+..++.. ..||
T Consensus 71 i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (279)
T PRK13635 71 LSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLS 142 (279)
T ss_pred CCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCC
Confidence 643 223567999999973 667789999998865432 1233344567889999999988777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|+++++. +|+++
T Consensus 143 ~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~-~G~i~ 219 (279)
T PRK13635 143 GGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMN-KGEIL 219 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999876 899999999975 34 5699999998 59999
Q ss_pred EEcCCC
Q 000937 851 YSGPLG 856 (1218)
Q Consensus 851 ~~g~~~ 856 (1218)
+.|+.+
T Consensus 220 ~~g~~~ 225 (279)
T PRK13635 220 EEGTPE 225 (279)
T ss_pred EECCHH
Confidence 999863
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=335.69 Aligned_cols=212 Identities=23% Similarity=0.306 Sum_probs=175.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+.
T Consensus 1 l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 64 (230)
T TIGR03410 1 LEVSNLNVYYG--------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDI 64 (230)
T ss_pred CEEEeEEEEeC--------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 35788888773 24699999999999999999999999999999999999876 489999999875
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcC-CCccccccccCCCCCCCC
Q 000937 697 IQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE-LDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 697 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~LS 771 (1218)
... ..++.++|++|+..+++.+|+.||+.+....+. . ...+..+++++.++ +.+..++.+ ++||
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~---~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 133 (230)
T TIGR03410 65 TKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---R---RSRKIPDEIYELFPVLKEMLGRRG-----GDLS 133 (230)
T ss_pred CCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---c---chHHHHHHHHHHHHhHHHHhhCCh-----hhCC
Confidence 421 124569999999999999999999988653321 1 12234566777776 455555543 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|+++
T Consensus 134 ~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~g~i~ 211 (230)
T TIGR03410 134 GGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVME-RGRVV 211 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999875 899999999975 5666899999997 59999
Q ss_pred EEcCCCC
Q 000937 851 YSGPLGN 857 (1218)
Q Consensus 851 ~~g~~~~ 857 (1218)
..|+.++
T Consensus 212 ~~~~~~~ 218 (230)
T TIGR03410 212 ASGAGDE 218 (230)
T ss_pred EECCHHH
Confidence 9998753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=341.24 Aligned_cols=221 Identities=24% Similarity=0.356 Sum_probs=182.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCE
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGY 694 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~ 694 (1218)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+|. ..+|+|.++|.
T Consensus 4 ~l~~~nl~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~ 69 (262)
T PRK09984 4 IIRVEKLAKTFN--------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR 69 (262)
T ss_pred EEEEeeEEEEeC--------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCE
Confidence 478999998873 246999999999999999999999999999999999987764 13699999998
Q ss_pred eCcc--------ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC-----CCChhhHHHHHHHHHHHcCCCcccccc
Q 000937 695 PKIQ--------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-----QINSKTKADCVNHVLKTIELDGIKESL 761 (1218)
Q Consensus 695 ~~~~--------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~ 761 (1218)
+... ...++.++|++|++.+++.+||.||+.+......+. .....+.+++++++++.+++.+..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 149 (262)
T PRK09984 70 TVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR 149 (262)
T ss_pred ecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC
Confidence 7532 123456899999999999999999998754211000 011223345688899999998776765
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceE
Q 000937 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDEL 840 (1218)
Q Consensus 762 ~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 840 (1218)
+ .+|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++
T Consensus 150 ~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i 223 (262)
T PRK09984 150 V-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERI 223 (262)
T ss_pred c-----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 4 479999999999999999999999999999999999999999999999864 899999999985 467889999
Q ss_pred EEEecCCEEEEEcCCCC
Q 000937 841 ILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 841 ~~l~~~G~~~~~g~~~~ 857 (1218)
+++. +|++++.|++++
T Consensus 224 ~~l~-~g~i~~~g~~~~ 239 (262)
T PRK09984 224 VALR-QGHVFYDGSSQQ 239 (262)
T ss_pred EEEE-CCEEEEeCCHHH
Confidence 9997 589999998753
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=337.74 Aligned_cols=218 Identities=27% Similarity=0.302 Sum_probs=179.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 4 ~l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~ 69 (253)
T PRK14267 4 AIETVNLRVYYG--------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLF 69 (253)
T ss_pred eEEEEeEEEEeC--------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 478999998873 246999999999999999999999999999999999987653 248999999
Q ss_pred CEeCc--c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKI--Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~--~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|+++. . ..+++.++|++|++.+++.+||.||+.+....+.. ....+...+.++++++.+++.. ..+..
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 146 (253)
T PRK14267 70 GRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY-- 146 (253)
T ss_pred CEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC--
Confidence 98763 1 13456799999999999999999999886543211 0122333456778888888753 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|++++|
T Consensus 147 ---~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 221 (253)
T PRK14267 147 ---PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFL 221 (253)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999865 699999999975 567789999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
. +|+++..|+++
T Consensus 222 ~-~G~i~~~~~~~ 233 (253)
T PRK14267 222 Y-LGKLIEVGPTR 233 (253)
T ss_pred E-CCEEEEeCCHH
Confidence 7 59999998863
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=331.28 Aligned_cols=213 Identities=25% Similarity=0.377 Sum_probs=176.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. ...+.+++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 6 ~l~~~~l~~~~~~~----------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~ 73 (228)
T PRK10584 6 IVEVHHLKKSVGQG----------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQP 73 (228)
T ss_pred eEEEeeeEEEccCC----------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEE
Confidence 47899999887421 0113599999999999999999999999999999999999876 48999999987
Q ss_pred Ccccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCC
Q 000937 696 KIQET------F-VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 768 (1218)
..... . ++.++|++|++.+++.+|+.||+.+....+. ....+..++++++++.+++.+..+..+ .
T Consensus 74 ~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 145 (228)
T PRK10584 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----A 145 (228)
T ss_pred cccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----h
Confidence 53211 1 2569999999989999999999987653321 122334567888999999987766654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ . .+.+|+++++. +|
T Consensus 146 ~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~-~~~~d~i~~l~-~g 222 (228)
T PRK10584 146 QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-L-AARCDRRLRLV-NG 222 (228)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-H-HHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999765 899999999975 3 46699999997 58
Q ss_pred EEEE
Q 000937 848 RIIY 851 (1218)
Q Consensus 848 ~~~~ 851 (1218)
+++.
T Consensus 223 ~i~~ 226 (228)
T PRK10584 223 QLQE 226 (228)
T ss_pred EEEe
Confidence 8864
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=341.25 Aligned_cols=214 Identities=22% Similarity=0.334 Sum_probs=178.3
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|+++
T Consensus 2 l~~~~l~~~~~--------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 65 (271)
T PRK13638 2 LATSDLWFRYQ--------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPL 65 (271)
T ss_pred eEEEEEEEEcC--------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEc
Confidence 57889998773 24699999999999999999999999999999999998876 489999999985
Q ss_pred cc-----ccccceEEEeccCCCC-CCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQ-----ETFVRVSGYCEQTDIH-SPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~-----~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. ...++.++|++|++.. +...|+.||+.+..... .....+..+.++++++.+++.+..++.+ ..|
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 137 (271)
T PRK13638 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCL 137 (271)
T ss_pred ccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhC
Confidence 31 1234679999998753 45568999998764322 1223333456788999999987766654 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|. +|+++
T Consensus 138 SgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~-~G~i~ 215 (271)
T PRK13638 138 SHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLR-QGQIL 215 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 5667899999997 59999
Q ss_pred EEcCCC
Q 000937 851 YSGPLG 856 (1218)
Q Consensus 851 ~~g~~~ 856 (1218)
+.|+++
T Consensus 216 ~~g~~~ 221 (271)
T PRK13638 216 THGAPG 221 (271)
T ss_pred EeCCHH
Confidence 999763
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=345.84 Aligned_cols=225 Identities=17% Similarity=0.242 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG--CFKGEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~--~~~G~i~~~g 693 (1218)
.++++|+++.++.. .+..++|+||||+|++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 3 ~L~v~~l~~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G 72 (326)
T PRK11022 3 LLNVDKLSVHFGDE----------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNG 72 (326)
T ss_pred eEEEeCeEEEECCC----------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECC
Confidence 37899999988531 11247999999999999999999999999999999999987631 2589999999
Q ss_pred EeCcc---cc----ccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccC
Q 000937 694 YPKIQ---ET----FVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 694 ~~~~~---~~----~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 764 (1218)
+++.. .. .++.++|++|++ .+.|.+|+.+++........ ....++..+++.++++.+||.+..+..-.
T Consensus 73 ~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~- 149 (326)
T PRK11022 73 QDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDV- 149 (326)
T ss_pred EECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhC-
Confidence 98642 11 124699999997 47899999998876543321 12344556778899999999753221111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
.+.+|||||||||+||+||+.+|++|++||||+|||+.++.+++++|+++++ .|.|+|++|||++ .+.+.+|++++|
T Consensus 150 -~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm 227 (326)
T PRK11022 150 -YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVM 227 (326)
T ss_pred -CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 1358999999999999999999999999999999999999999999999986 4999999999975 456789999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
. +|++++.|+.+
T Consensus 228 ~-~G~ive~g~~~ 239 (326)
T PRK11022 228 Y-AGQVVETGKAH 239 (326)
T ss_pred E-CCEEEEECCHH
Confidence 8 69999999864
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=339.72 Aligned_cols=224 Identities=19% Similarity=0.295 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++...... ..+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++
T Consensus 3 l~~~~l~~~~~~~~~~~-----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG-----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDL 75 (265)
T ss_pred EEEEeEEEEeccCcccc-----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEc
Confidence 67899998874210000 00135799999999999999999999999999999999999876 489999999875
Q ss_pred ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000937 697 IQE------TFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGV 767 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 767 (1218)
... ..++.++|++|++ .+.+.+||+||+.+..... .........++++++++.+++. +..+..+
T Consensus 76 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 148 (265)
T TIGR02769 76 YQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP----- 148 (265)
T ss_pred cccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----
Confidence 421 1345799999986 4667899999998754321 1122233455678899999995 5556553
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|. +
T Consensus 149 ~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~-~ 226 (265)
T TIGR02769 149 RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD-K 226 (265)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe-C
Confidence 479999999999999999999999999999999999999999999999875 899999999975 5667899999997 6
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|++++.|+++
T Consensus 227 G~i~~~g~~~ 236 (265)
T TIGR02769 227 GQIVEECDVA 236 (265)
T ss_pred CEEEEECCHH
Confidence 9999999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=341.38 Aligned_cols=215 Identities=27% Similarity=0.382 Sum_probs=179.9
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.+.. .+.+++|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|++.
T Consensus 2 l~~~~l~~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~ 66 (275)
T PRK13639 2 LETRDLKYSYPD-------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT--SGEVLIKGEPI 66 (275)
T ss_pred EEEEEEEEEeCC-------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCEEC
Confidence 578899988731 236999999999999999999999999999999999988764 89999999886
Q ss_pred cc-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQ-----ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.. ...++.++|++|++. .+...||.||+.+..... .....+..+++.++++.+++.+..++.+ ++|
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 138 (275)
T PRK13639 67 KYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHL 138 (275)
T ss_pred ccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhC
Confidence 31 123567999999863 334579999998764321 1223344566888999999988777764 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 139 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~-~G~i~ 216 (275)
T PRK13639 139 SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMS-DGKII 216 (275)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 5667899999998 59999
Q ss_pred EEcCCC
Q 000937 851 YSGPLG 856 (1218)
Q Consensus 851 ~~g~~~ 856 (1218)
..|+++
T Consensus 217 ~~g~~~ 222 (275)
T PRK13639 217 KEGTPK 222 (275)
T ss_pred EeCCHH
Confidence 999864
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=340.87 Aligned_cols=220 Identities=23% Similarity=0.326 Sum_probs=182.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+
T Consensus 6 ~~l~i~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~ 69 (265)
T PRK10253 6 ARLRGEQLTLGYG--------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGE 69 (265)
T ss_pred cEEEEEEEEEEEC--------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCE
Confidence 4688999999884 24699999999999999999999999999999999998876 4899999998
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
++.. ...++.++|++|++.+++.+|++||+.+......+ .....+...+.++++++.+++.+..++.+ +.|
T Consensus 70 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 144 (265)
T PRK10253 70 HIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTL 144 (265)
T ss_pred EhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccC
Confidence 7532 22345699999999988899999999864211100 00011233456788999999987666654 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|++
T Consensus 145 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i 222 (265)
T PRK10253 145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALR-EGKI 222 (265)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999875 899999999985 5778899999997 6999
Q ss_pred EEEcCCCC
Q 000937 850 IYSGPLGN 857 (1218)
Q Consensus 850 ~~~g~~~~ 857 (1218)
+..|++++
T Consensus 223 ~~~g~~~~ 230 (265)
T PRK10253 223 VAQGAPKE 230 (265)
T ss_pred EEeCCHHH
Confidence 99998643
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=339.36 Aligned_cols=217 Identities=28% Similarity=0.416 Sum_probs=180.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~--------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 65 (256)
T TIGR03873 2 LRLSRVSWSAG--------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDL 65 (256)
T ss_pred ceEEeEEEEEC--------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEc
Confidence 56788888773 24699999999999999999999999999999999998876 489999999875
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
.. ...++.++|++|+..+++.+||.||+.+....... ......+..+++.++++.+++.+..++.+ ..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 140 (256)
T TIGR03873 66 HGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSG 140 (256)
T ss_pred ccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCH
Confidence 42 22345689999998778889999999875211000 00111223456788999999987767654 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++|. +|+++..
T Consensus 141 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~ 218 (256)
T TIGR03873 141 GERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLD-GGRVVAA 218 (256)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCCEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 5668899999997 5899999
Q ss_pred cCCC
Q 000937 853 GPLG 856 (1218)
Q Consensus 853 g~~~ 856 (1218)
|+.+
T Consensus 219 g~~~ 222 (256)
T TIGR03873 219 GPPR 222 (256)
T ss_pred cCHH
Confidence 8864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=344.98 Aligned_cols=227 Identities=21% Similarity=0.257 Sum_probs=184.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++.+||++.+....... ...+.+.+|+|||++|++||++||+|+||||||||+++|+|+.++ .+|+|.++|+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~----~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~ 77 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLF----KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQ 77 (327)
T ss_pred ceEEEeeeEEEEcCCCCcc----ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCE
Confidence 3588999999885321100 001235799999999999999999999999999999999998876 4899999999
Q ss_pred eCcc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCC
Q 000937 695 PKIQ------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIP 765 (1218)
Q Consensus 695 ~~~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~ 765 (1218)
++.. ..+++.++||+|++ .+.|.+|+.+++........ .....+..+++.++++.+||.+ ..++.
T Consensus 78 ~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~---- 151 (327)
T PRK11308 78 DLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY---- 151 (327)
T ss_pred EcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC----
Confidence 8642 12456799999997 58899999999987644321 1234445667899999999963 44554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
+++|||||||||+||+||+.+|++|++||||+|||..++..++++|+++.++ |.|+|++|||++ .+.+.+|++++|.
T Consensus 152 -p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~ 229 (327)
T PRK11308 152 -PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMY 229 (327)
T ss_pred -CccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 3589999999999999999999999999999999999999999999999765 999999999975 4556899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 230 -~G~ive~g~~~ 240 (327)
T PRK11308 230 -LGRCVEKGTKE 240 (327)
T ss_pred -CCEEEEECCHH
Confidence 59999999864
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=336.30 Aligned_cols=221 Identities=25% Similarity=0.323 Sum_probs=177.0
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEE
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--S-GCFKGEIK 690 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~-~~~~G~i~ 690 (1218)
|..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ + .+.+|+|.
T Consensus 4 ~~~l~~~~l~~~~~--------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 69 (253)
T PRK14242 4 PPKMEARGLSFFYG--------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL 69 (253)
T ss_pred CcEEEEeeeEEEEC--------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEE
Confidence 34589999999883 2369999999999999999999999999999999999753 1 12589999
Q ss_pred ECCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 691 VNGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 691 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
++|+++.. ...++.++|++|++.+++ .||+||+.+....+. ....+...++++++++.+++.+....... .
T Consensus 70 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~ 145 (253)
T PRK14242 70 LDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLH-E 145 (253)
T ss_pred ECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-C
Confidence 99987632 123567999999988887 599999988754321 11122334567888898888542111111 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 146 ~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~- 222 (253)
T PRK14242 146 SALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFY- 222 (253)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEE-
Confidence 1358999999999999999999999999999999999999999999999954 799999999985 5667899999997
Q ss_pred CCEEEEEcCC
Q 000937 846 GGRIIYSGPL 855 (1218)
Q Consensus 846 ~G~~~~~g~~ 855 (1218)
+|+++..|++
T Consensus 223 ~G~i~~~g~~ 232 (253)
T PRK14242 223 MGKLIEVGPT 232 (253)
T ss_pred CCEEEEeCCH
Confidence 5999998875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=345.28 Aligned_cols=226 Identities=20% Similarity=0.311 Sum_probs=183.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCE
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGY 694 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~ 694 (1218)
.++++|+++.+... .+...+|+||||+|++||+++|+|+||||||||+++|+|+.++. ..+|+|.++|+
T Consensus 12 ~L~i~~l~~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~ 81 (330)
T PRK09473 12 LLDVKDLRVTFSTP----------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGR 81 (330)
T ss_pred eEEEeCeEEEEecC----------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCE
Confidence 58899999988531 12357999999999999999999999999999999999987752 13899999999
Q ss_pred eCcc---cc---cc-ceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 695 PKIQ---ET---FV-RVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 695 ~~~~---~~---~~-~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
++.. .. .+ +.++||+|++ .+.|.+|+.+++........ .....+..+++.++++.++|.+..+..- .
T Consensus 82 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~--~ 157 (330)
T PRK09473 82 EILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMK--M 157 (330)
T ss_pred ECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhc--C
Confidence 8642 11 22 4799999997 67899999999987654321 1234444567888999999875432221 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+.+|||||||||+||+||+.+|++|++||||+|||+.++..++++|++++++ |.|+|++|||++ .+.+.+|++++|.
T Consensus 158 ~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~ 236 (330)
T PRK09473 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY 236 (330)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 24689999999999999999999999999999999999999999999999775 999999999975 4567899999997
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
+|++++.|+.++
T Consensus 237 -~G~ive~g~~~~ 248 (330)
T PRK09473 237 -AGRTMEYGNARD 248 (330)
T ss_pred -CCEEEEECCHHH
Confidence 699999998643
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=335.91 Aligned_cols=220 Identities=20% Similarity=0.277 Sum_probs=176.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCC---CCCCceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR---KTSGCFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~---~~~~~~~G~i~~~ 692 (1218)
.++++|+++.+. .+++|+|+|+++++||+++|+||||||||||+++|+|+ .++.+.+|+|.++
T Consensus 3 ~l~~~~~~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 68 (250)
T PRK14245 3 KIDARDVNFWYG--------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRID 68 (250)
T ss_pred EEEEEEEEEEEC--------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEEC
Confidence 578899998873 24699999999999999999999999999999999996 2332247999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|++... ...++.++|++|++.+++ .|+.||+.+....+. ....+...+.++++++.+++.+..+.... ..+
T Consensus 69 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 144 (250)
T PRK14245 69 GRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESA 144 (250)
T ss_pred CEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCc
Confidence 988642 123567999999988776 699999988654321 11122234567888999988642211111 113
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++.+.+|++++|. +|
T Consensus 145 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~-~G 221 (250)
T PRK14245 145 FALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY-MG 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE-CC
Confidence 5899999999999999999999999999999999999999999999985 4899999999985 5678899999997 69
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
++++.|+++
T Consensus 222 ~~~~~~~~~ 230 (250)
T PRK14245 222 EMVEYDDTK 230 (250)
T ss_pred EEEEECCHH
Confidence 999999863
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=329.18 Aligned_cols=225 Identities=24% Similarity=0.346 Sum_probs=185.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-C-C-ceeeEEEECC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT-S-G-CFKGEIKVNG 693 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~-~-~-~~~G~i~~~g 693 (1218)
++.+||+..+.+. .+..++++||||++++||++||+|.|||||||+.++|.|+.+ + + ..+|+|.++|
T Consensus 2 L~v~nL~v~f~~~----------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g 71 (316)
T COG0444 2 LEVKNLSVSFPTD----------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDG 71 (316)
T ss_pred ceEeeeEEEEecC----------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECC
Confidence 5688998888642 124679999999999999999999999999999999999876 3 2 3579999999
Q ss_pred EeCc---cc---c-ccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCC-ChhhHHHHHHHHHHHcCCCcccccccc
Q 000937 694 YPKI---QE---T-FVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQI-NSKTKADCVNHVLKTIELDGIKESLVG 763 (1218)
Q Consensus 694 ~~~~---~~---~-~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~ 763 (1218)
+++. ++ . ..+.+++++|++ .+.|.+||.+.+.-...... .. .+++..+++.++++.+|+.+-....-.
T Consensus 72 ~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~ 149 (316)
T COG0444 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKS 149 (316)
T ss_pred cccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhh
Confidence 9742 21 1 235799999996 57899999998876654322 11 244556778899999999865433333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
. +.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.++|++|||+. -+.+.+|+++|
T Consensus 150 Y--PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~V 226 (316)
T COG0444 150 Y--PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAV 226 (316)
T ss_pred C--CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEE
Confidence 3 368999999999999999999999999999999999999999999999986 5999999999986 47889999999
Q ss_pred EecCCEEEEEcCCCC
Q 000937 843 LKTGGRIIYSGPLGN 857 (1218)
Q Consensus 843 l~~~G~~~~~g~~~~ 857 (1218)
|. .|++|+.|+..+
T Consensus 227 MY-aG~iVE~g~~~~ 240 (316)
T COG0444 227 MY-AGRIVEEGPVEE 240 (316)
T ss_pred EE-CcEEEEeCCHHH
Confidence 98 699999999753
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=338.87 Aligned_cols=217 Identities=22% Similarity=0.370 Sum_probs=181.7
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 6 ~~l~~~nl~~~~~~------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~ 71 (271)
T PRK13632 6 VMIKVENVSFSYPN------------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGI 71 (271)
T ss_pred eEEEEEeEEEEcCC------------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCE
Confidence 45889999988731 124699999999999999999999999999999999999876 4899999999
Q ss_pred eCcc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
+... ..+++.++|++|++. .++.+||+||+.+..... ....++..++++++++.+++.+..++.+ +.|
T Consensus 72 ~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 143 (271)
T PRK13632 72 TISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNL 143 (271)
T ss_pred ecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccC
Confidence 8642 234567999999974 567799999998864321 1223334556788999999987777664 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||+++|+++ ++ ..+|++++|. +|++
T Consensus 144 S~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~-~G~i 220 (271)
T PRK13632 144 SGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFS-EGKL 220 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999876 599999999986 34 5799999997 6999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
+..|+.+
T Consensus 221 ~~~g~~~ 227 (271)
T PRK13632 221 IAQGKPK 227 (271)
T ss_pred EEecCHH
Confidence 9988753
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=323.64 Aligned_cols=196 Identities=31% Similarity=0.586 Sum_probs=163.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCE
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGY 694 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~ 694 (1218)
.++|+|++|.++.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|.
T Consensus 3 ~~~~~~~~~~~~~~----------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~ 72 (202)
T cd03233 3 TLSWRNISFTTGKG----------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGI 72 (202)
T ss_pred eEEEEccEEEeccC----------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCE
Confidence 57899999999642 13457999999999999999999999999999999999987732 35899999998
Q ss_pred eCcc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 695 PKIQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 695 ~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
+... ...++.++|++|++.+++.+||+||+.+..... .+.. +..|||
T Consensus 73 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~ 121 (202)
T cd03233 73 PYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISG 121 (202)
T ss_pred ECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCH
Confidence 8643 234567999999999999999999998753210 2222 347999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.+|++++|. +|++++
T Consensus 122 Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~-~G~i~~ 200 (202)
T cd03233 122 GERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY-EGRQIY 200 (202)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEE-CCEEEe
Confidence 9999999999999999999999999999999999999999999765 67777776654346778899999998 589887
Q ss_pred Ec
Q 000937 852 SG 853 (1218)
Q Consensus 852 ~g 853 (1218)
.|
T Consensus 201 ~g 202 (202)
T cd03233 201 YG 202 (202)
T ss_pred cC
Confidence 54
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=351.14 Aligned_cols=205 Identities=20% Similarity=0.326 Sum_probs=176.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe----Ccc---cc---c-cceEEEec
Q 000937 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP----KIQ---ET---F-VRVSGYCE 709 (1218)
Q Consensus 641 ~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~----~~~---~~---~-~~~~~~v~ 709 (1218)
+...+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++ +.. .. . ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 356789999999999999999999999999999999999887 48999999963 211 11 1 25699999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc
Q 000937 710 QTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPS 789 (1218)
Q Consensus 710 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~ 789 (1218)
|+..++|++||+||+.++...+ .....+..++++++++.+||.+..+... .+|||||||||+|||+|+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886432 1234455667889999999988777764 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 790 IIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 790 llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
+|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|++++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~-~G~iv~~g~~~e 251 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIME-GGRIIQHGTPEE 251 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCHHH
Confidence 99999999999999999999999999875 999999999986 5678899999997 699999998753
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=336.39 Aligned_cols=218 Identities=23% Similarity=0.311 Sum_probs=178.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.++
T Consensus 4 ~l~i~~v~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~ 69 (258)
T PRK14241 4 RIDVKDLNIYYG--------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLD 69 (258)
T ss_pred cEEEeeEEEEEC--------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEEC
Confidence 478899998873 246999999999999999999999999999999999987642 248999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|+++.. ...++.++|++|+..+++.+||+||+.+....+. ........+.++++++.+++.. ..+..
T Consensus 70 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 145 (258)
T PRK14241 70 GEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP-- 145 (258)
T ss_pred CEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC--
Confidence 987531 2345679999999999999999999988654321 1122334456788899998842 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++
T Consensus 146 ---~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l 220 (258)
T PRK14241 146 ---GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFF 220 (258)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999964 689999999975 567789999999
Q ss_pred e-----cCCEEEEEcCCC
Q 000937 844 K-----TGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~-----~~G~~~~~g~~~ 856 (1218)
. ++|++++.|+++
T Consensus 221 ~~~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 221 NLEATGKPGRLVEIDDTE 238 (258)
T ss_pred ecccCCCCceEEecCCHH
Confidence 6 358999998753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=340.70 Aligned_cols=219 Identities=24% Similarity=0.335 Sum_probs=178.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++... ...+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 2 ~l~~~~l~~~~~~~~---------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~ 70 (280)
T PRK13649 2 GINLQNVSYTYQAGT---------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTL 70 (280)
T ss_pred eEEEEEEEEEcCCCC---------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 367899999874210 0113699999999999999999999999999999999999876 48999999987
Q ss_pred Ccc-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 696 KIQ-------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 696 ~~~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
+.. ...++.++|++|++ .+++ .||+||+.+..... ....++..+.++++++.+++. ...+..+
T Consensus 71 i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 143 (280)
T PRK13649 71 ITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP--- 143 (280)
T ss_pred ccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc---
Confidence 532 12356799999986 3444 69999998764322 122333445678889999996 3445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.
T Consensus 144 --~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~- 219 (280)
T PRK13649 144 --FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLE- 219 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEE-
Confidence 579999999999999999999999999999999999999999999999877999999999975 5667899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+++
T Consensus 220 ~G~i~~~g~~~ 230 (280)
T PRK13649 220 KGKLVLSGKPK 230 (280)
T ss_pred CCEEEEeCCHH
Confidence 59999988763
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=326.67 Aligned_cols=209 Identities=24% Similarity=0.344 Sum_probs=174.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+++|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|+++.
T Consensus 2 ~~~~l~~~~~----------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 63 (213)
T TIGR01277 2 ALDKVRYEYE----------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA--SGSIKVNDQSHT 63 (213)
T ss_pred eEEeeeEEeC----------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEcc
Confidence 5788887763 1357999999999999999999999999999999998764 899999998754
Q ss_pred c-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 Q-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
. ...++.++|++|++.+++.+|+.||+.+...... .......++++++++.+++.+..++.+ +.|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (213)
T TIGR01277 64 GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KLNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQ 135 (213)
T ss_pred cCChhccceEEEeccCccCCCCcHHHHHHhHhhccC---CccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHH
Confidence 2 2345679999999999999999999987542211 111223456788999999987766654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcC
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 854 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|+++..|.
T Consensus 136 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999999999999999999999999999999999765 899999999975 5667899999997 699988774
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=370.09 Aligned_cols=222 Identities=21% Similarity=0.331 Sum_probs=186.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++++.+|+|.++|.+
T Consensus 5 ~l~~~nl~~~~~--------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~ 70 (506)
T PRK13549 5 LLEMKNITKTFG--------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEE 70 (506)
T ss_pred eEEEeeeEEEeC--------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence 478999998873 246999999999999999999999999999999999987753358999999988
Q ss_pred Cccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.... ..++.++|++|++.+++.+||+||+.+....+.......++..++++++++.+++.+..++.+ .+||
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 145 (506)
T PRK13549 71 LQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLG 145 (506)
T ss_pred CCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCC
Confidence 6432 124569999999988999999999988643221111122334456889999999987777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 146 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~-~G~i~~ 223 (506)
T PRK13549 146 LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIR-DGRHIG 223 (506)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEE-CCEEee
Confidence 99999999999999999999999999999999999999999999878999999999975 5667899999998 599999
Q ss_pred EcCCCCC
Q 000937 852 SGPLGNH 858 (1218)
Q Consensus 852 ~g~~~~~ 858 (1218)
.|++++.
T Consensus 224 ~~~~~~~ 230 (506)
T PRK13549 224 TRPAAGM 230 (506)
T ss_pred ecccccC
Confidence 9988654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=326.60 Aligned_cols=203 Identities=22% Similarity=0.328 Sum_probs=183.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---c---c-ccceEEEeccCCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---E---T-FVRVSGYCEQTDIHS 715 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~---~-~~~~~~~v~q~~~~~ 715 (1218)
..-++|+|++++.||+..|||-||||||||+++|.++.+| +.|+|+++|.++.. . . .++.++.|+|...++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 3458999999999999999999999999999999999887 48999999998532 1 2 346799999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000937 716 PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDE 795 (1218)
Q Consensus 716 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDE 795 (1218)
|+.||.||..|+..++. .+++++++++.+.++..||.+..+... .+|||||||||.|||||+.+|+||++||
T Consensus 119 PhrtVl~Nv~fGLev~G---v~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQG---VPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeecC---CCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 99999999999987663 467788899999999999999988874 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 796 PTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 796 PtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
|+|+|||--+.++.+.|.+|.++ ++|||++|||++ |.+..-||+.+|. +|+++..|++++
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 99999999999999999999765 999999999997 7889999999997 699999999865
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=337.80 Aligned_cols=217 Identities=23% Similarity=0.315 Sum_probs=181.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.
T Consensus 6 ~~l~i~~l~~~~~~------------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~ 71 (269)
T PRK13648 6 SIIVFKNVSFQYQS------------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQ 71 (269)
T ss_pred ceEEEEEEEEEcCC------------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCE
Confidence 35889999998742 123589999999999999999999999999999999999876 4899999998
Q ss_pred eCcc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
+... ...++.++|++|++. +++..|+.+|+.+..... ....+...+.++++++.+++.+..+..+ ++|
T Consensus 72 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 143 (269)
T PRK13648 72 AITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NAL 143 (269)
T ss_pred ECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccC
Confidence 7642 234567999999974 677889999998864322 1223334456788999999987776653 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++. .+|++++|. +|++
T Consensus 144 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~-~G~i 220 (269)
T PRK13648 144 SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMN-KGTV 220 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999765 899999999986 444 599999997 5999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
++.|+++
T Consensus 221 ~~~g~~~ 227 (269)
T PRK13648 221 YKEGTPT 227 (269)
T ss_pred EEecCHH
Confidence 9999864
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=335.60 Aligned_cols=219 Identities=21% Similarity=0.290 Sum_probs=178.6
Q ss_pred CCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeE
Q 000937 612 FQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGE 688 (1218)
Q Consensus 612 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~ 688 (1218)
.....++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. +.+|+
T Consensus 9 ~~~~~l~~~~l~~~~~--------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~ 74 (260)
T PRK10744 9 TAPSKIQVRNLNFYYG--------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGE 74 (260)
T ss_pred CCCceEEEEEEEEEeC--------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceE
Confidence 3445689999999873 2369999999999999999999999999999999999865 21 25899
Q ss_pred EEECCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccc
Q 000937 689 IKVNGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKE 759 (1218)
Q Consensus 689 i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~ 759 (1218)
|.++|++... ...++.++|++|+..+++ .|++||+.+...... ....++..++++++++.+++.+ ..+
T Consensus 75 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (260)
T PRK10744 75 ILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLH 151 (260)
T ss_pred EEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHh
Confidence 9999988631 123567999999988777 899999987653221 1223334456788999998742 233
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Q 000937 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 760 ~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
.. +.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|+
T Consensus 152 ~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~ 224 (260)
T PRK10744 152 QS-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDY 224 (260)
T ss_pred cC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 32 35899999999999999999999999999999999999999999999996 4789999999975 56678999
Q ss_pred EEEEecCCEEEEEcCC
Q 000937 840 LILLKTGGRIIYSGPL 855 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~ 855 (1218)
+++|. +|+++..|+.
T Consensus 225 i~~l~-~G~i~~~g~~ 239 (260)
T PRK10744 225 TAFMY-LGELIEFGNT 239 (260)
T ss_pred EEEEE-CCEEEEeCCH
Confidence 99998 5999999875
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=334.77 Aligned_cols=225 Identities=22% Similarity=0.230 Sum_probs=180.8
Q ss_pred CCCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceee
Q 000937 611 PFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKG 687 (1218)
Q Consensus 611 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G 687 (1218)
|..+..++++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|
T Consensus 15 ~~~~~~l~~~nl~~~~~--------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G 80 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG--------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG 80 (267)
T ss_pred CCCCeEEEEeeEEEEEC--------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcce
Confidence 33455789999999873 246999999999999999999999999999999999987531 3589
Q ss_pred EEEECCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccc
Q 000937 688 EIKVNGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLV 762 (1218)
Q Consensus 688 ~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 762 (1218)
+|.++|.+... ...++.++|++|++.+++ .||+||+.++.... .........+++.++++.+++.+..+...
T Consensus 81 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~ 157 (267)
T PRK14237 81 QILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL 157 (267)
T ss_pred EEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 99999988632 123567999999988877 69999998864321 11122334456788899988853211111
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
.. .+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||+++ ++.+.+|++++
T Consensus 158 ~~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 158 HK-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred cC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEE
Confidence 11 246899999999999999999999999999999999999999999999985 4799999999985 56788999999
Q ss_pred EecCCEEEEEcCCC
Q 000937 843 LKTGGRIIYSGPLG 856 (1218)
Q Consensus 843 l~~~G~~~~~g~~~ 856 (1218)
|. +|+++..|++.
T Consensus 235 l~-~G~i~~~g~~~ 247 (267)
T PRK14237 235 FY-LGDLIEYDKTR 247 (267)
T ss_pred EE-CCEEEEeCCHH
Confidence 97 69999999863
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=331.12 Aligned_cols=198 Identities=21% Similarity=0.331 Sum_probs=167.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHH
Q 000937 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLF 725 (1218)
Q Consensus 646 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 725 (1218)
|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|++..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999999876 4899999998864321 12489999999999999999998
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000937 726 FSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAA 805 (1218)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~ 805 (1218)
+...... ......+..++++++++.+++.+..++.+ .+||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 8632111 11223334556788999999987766654 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 806 AIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 806 ~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLT-NGPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe-CCcEecccCc
Confidence 9999999999765 899999999985 5677899999998 5999988864
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=328.99 Aligned_cols=212 Identities=26% Similarity=0.384 Sum_probs=180.2
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
.++|+++.++ .+.+++|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|++..
T Consensus 2 ~~~~l~~~~~--------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~--~G~i~~~g~~~~ 65 (232)
T cd03300 2 ELENVSKFYG--------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDIT 65 (232)
T ss_pred EEEeEEEEeC--------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEcC
Confidence 5788888773 246999999999999999999999999999999999998764 899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 QE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. ..||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQ 137 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 31 234679999999999889999999988654331 122333456788999999987777654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|+++++. +|++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~-~G~~~~~~~~ 215 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMN-KGKIQQIGTP 215 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 999999999999999999999999999999999999999875 999999999975 5677899999998 5899988864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=319.49 Aligned_cols=190 Identities=58% Similarity=0.975 Sum_probs=161.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. .+++++|+|+|+++++||+++|+||||||||||+++|+|+.+..+.+|+|.++|++
T Consensus 3 ~l~~~~l~~~~~~~----------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~ 72 (192)
T cd03232 3 VLTWKNLNYTVPVK----------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRP 72 (192)
T ss_pred EEEEeeeEEEecCC----------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEe
Confidence 46899999988421 01246999999999999999999999999999999999975322258999999988
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
.. ...++.++|++|++.+++.+|++||+.+...+ + +||||||
T Consensus 73 ~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~ 114 (192)
T cd03232 73 LD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQR 114 (192)
T ss_pred hH-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHh
Confidence 64 33456799999999889999999999864210 0 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++.++.+.+|++++|.++|++++.|
T Consensus 115 qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 115 KRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999999999987799999999998644678899999997438998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=349.57 Aligned_cols=214 Identities=29% Similarity=0.491 Sum_probs=180.6
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
++.++.+|+++.++. .+++++|+|+++++|+.+||+|+||||||||+++|+|+.++ .+|+|.+||
T Consensus 318 ~~ei~~~~l~~~y~~-------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 318 PIEISLENLSFRYPD-------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CceeeecceEEecCC-------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 567778899998853 23799999999999999999999999999999999999887 489999999
Q ss_pred EeCc---cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc------cccccccC
Q 000937 694 YPKI---QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG------IKESLVGI 764 (1218)
Q Consensus 694 ~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~------~~~~~~~~ 764 (1218)
.+.. ...++++++||+|++.+++ -|++||+.++. ++.+ ++.+.++++..++.+ -.|+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8753 4568899999999998876 59999998752 1112 234556666666544 34666776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ++|||||+|||++||||+.+++++++||||++||.++++.|.+.|.++++ ++|+|++||++ .....+|++++|+
T Consensus 453 ~G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl--~~~~~~D~I~vld 528 (559)
T COG4988 453 GG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRL--EDAADADRIVVLD 528 (559)
T ss_pred CC-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcCh--HHHhcCCEEEEec
Confidence 54 68999999999999999999999999999999999999999999999986 59999999987 4577899999998
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
+|+++..|..++
T Consensus 529 -~G~l~~~g~~~~ 540 (559)
T COG4988 529 -NGRLVEQGTHEE 540 (559)
T ss_pred -CCceeccCCHHH
Confidence 599999998754
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=334.92 Aligned_cols=217 Identities=24% Similarity=0.278 Sum_probs=177.4
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
..++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.+
T Consensus 18 ~~l~~~nl~~~~~--------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~ 83 (267)
T PRK14235 18 IKMRARDVSVFYG--------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL 83 (267)
T ss_pred ceEEEEeEEEEEC--------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE
Confidence 3689999999873 246999999999999999999999999999999999987541 25899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc----ccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI----KESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~ 762 (1218)
+|+++.. ..+++.++|++|++.+++. ||.||+.+....+.. .....+..++++++++.+++.+. .+..
T Consensus 84 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 160 (267)
T PRK14235 84 DGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP- 160 (267)
T ss_pred CCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC-
Confidence 9988632 1245679999999888774 999999987543211 01122334567888999998542 2332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++
T Consensus 161 ----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~ 234 (267)
T PRK14235 161 ----GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAF 234 (267)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEE
Confidence 358999999999999999999999999999999999999999999999865 789999999975 56678899999
Q ss_pred EecCCEEEEEcCC
Q 000937 843 LKTGGRIIYSGPL 855 (1218)
Q Consensus 843 l~~~G~~~~~g~~ 855 (1218)
|. +|+++..|+.
T Consensus 235 l~-~G~i~~~g~~ 246 (267)
T PRK14235 235 FH-LGNLVEVGDT 246 (267)
T ss_pred EE-CCEEEEeCCH
Confidence 97 5999999875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=332.35 Aligned_cols=209 Identities=22% Similarity=0.328 Sum_probs=175.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 66 (241)
T PRK14250 3 EIEFKEVSYSSF--------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVD 66 (241)
T ss_pred eEEEEeEEEEeC--------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 478899998873 24699999999999999999999999999999999998876 48999999987
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LS 771 (1218)
+.. ...++.++|++|++.+++ .||+||+.+....+ . ...++++++++.+++. +..++. +..||
T Consensus 67 i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 133 (241)
T PRK14250 67 IKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLS 133 (241)
T ss_pred hhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCC
Confidence 532 234567999999988776 69999997653221 1 1234577889999996 455544 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 134 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~ 211 (241)
T PRK14250 134 GGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLN-KGILV 211 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEe-CCEEE
Confidence 99999999999999999999999999999999999999999999874 999999999975 5667899999998 58999
Q ss_pred EEcCC
Q 000937 851 YSGPL 855 (1218)
Q Consensus 851 ~~g~~ 855 (1218)
..|++
T Consensus 212 ~~~~~ 216 (241)
T PRK14250 212 EYAKT 216 (241)
T ss_pred EeCCH
Confidence 88875
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=349.54 Aligned_cols=192 Identities=26% Similarity=0.423 Sum_probs=168.6
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-------ccccceEEEeccCCCCCCCCCH
Q 000937 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-------ETFVRVSGYCEQTDIHSPHITI 720 (1218)
Q Consensus 648 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 720 (1218)
|+|+++++||+++|+|||||||||||++|+|+.+|. +|+|.++|++... ...++.++|++|+..+++++||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 899999999999999999999999999999998764 8999999987532 1235679999999999999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000937 721 EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgL 800 (1218)
+||+.++.. ....++++++++.+++.+..++.+ .+|||||||||+|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988532 122356788999999988777664 489999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 801 DARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 801 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
|+.++..+.+.|++++++ |+|+|++||+++ ++...+|++++|. +|+++..|++++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~-~G~i~~~g~~~~ 215 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLE-QGKVKAFGPLEE 215 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEe-CCEEEEecCHHH
Confidence 999999999999999876 899999999985 6778899999998 599999998643
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=336.58 Aligned_cols=219 Identities=23% Similarity=0.359 Sum_probs=178.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC------ceeeEEE
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG------CFKGEIK 690 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~------~~~G~i~ 690 (1218)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++. ..+|+|.
T Consensus 2 l~~~nl~~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~ 67 (272)
T PRK13547 2 LTADHLHVARR--------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVT 67 (272)
T ss_pred eEEEEEEEEEC--------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEE
Confidence 57889988773 246999999999999999999999999999999999987753 1279999
Q ss_pred ECCEeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCC
Q 000937 691 VNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 691 ~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
++|.+... ...++.++|++|++..++.+||+||+.+....... ......+..+.++++++.+++.+..++.+
T Consensus 68 ~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (272)
T PRK13547 68 LNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV---- 143 (272)
T ss_pred ECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 99987532 23345689999998766679999999875321100 01111233456788999999987666553
Q ss_pred CCCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHh
Q 000937 767 VSGLSTEQRKRLTIGVELV---------ANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFES 836 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~ 836 (1218)
..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.
T Consensus 144 -~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~ 221 (272)
T PRK13547 144 -TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARH 221 (272)
T ss_pred -ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHh
Confidence 579999999999999999 599999999999999999999999999999876 899999999985 56678
Q ss_pred hceEEEEecCCEEEEEcCCC
Q 000937 837 FDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 837 ~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+|++++|. +|+++..|+++
T Consensus 222 ~d~i~~l~-~G~i~~~g~~~ 240 (272)
T PRK13547 222 ADRIAMLA-DGAIVAHGAPA 240 (272)
T ss_pred CCEEEEEE-CCeEEEecCHH
Confidence 99999998 59999999864
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=343.90 Aligned_cols=227 Identities=16% Similarity=0.231 Sum_probs=179.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--CceeeEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS--GCFKGEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~--~~~~G~i~~~g 693 (1218)
.++++|+++.++.. .+.+.+|+|||++|++||+++|+|+||||||||+++|+|+.++ .+.+|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~----------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g 72 (330)
T PRK15093 3 LLDIRNLTIEFKTS----------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDD 72 (330)
T ss_pred eEEEeeeEEEEeCC----------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECC
Confidence 37899999988532 1235799999999999999999999999999999999998753 13589999999
Q ss_pred EeCcc---cc----ccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCC-C--CChhhHHHHHHHHHHHcCCCcccccc
Q 000937 694 YPKIQ---ET----FVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAP-Q--INSKTKADCVNHVLKTIELDGIKESL 761 (1218)
Q Consensus 694 ~~~~~---~~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~l~~~~~~~ 761 (1218)
+++.. .. .++.++||+|++. +.|.+||.+++.......... . ....+..+++.++++.+||.+..+..
T Consensus 73 ~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~ 152 (330)
T PRK15093 73 IDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM 152 (330)
T ss_pred EECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH
Confidence 98542 11 1346999999975 678899999997643211100 0 01123345788999999997532211
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceE
Q 000937 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDEL 840 (1218)
Q Consensus 762 ~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~ 840 (1218)
- ..+.+|||||||||+||+||+.+|++|+|||||+|||+.++.+++++|+++.++ |.|||++|||++ .+.+.+|++
T Consensus 153 ~--~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri 229 (330)
T PRK15093 153 R--SFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKI 229 (330)
T ss_pred h--CCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEE
Confidence 1 113589999999999999999999999999999999999999999999999875 999999999975 566789999
Q ss_pred EEEecCCEEEEEcCCC
Q 000937 841 ILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 841 ~~l~~~G~~~~~g~~~ 856 (1218)
++|. +|++++.|+.+
T Consensus 230 ~vm~-~G~ive~g~~~ 244 (330)
T PRK15093 230 NVLY-CGQTVETAPSK 244 (330)
T ss_pred EEEE-CCEEEEECCHH
Confidence 9998 69999999864
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=350.09 Aligned_cols=195 Identities=26% Similarity=0.429 Sum_probs=169.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-------ccccceEEEeccCCCCCCCCCH
Q 000937 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-------ETFVRVSGYCEQTDIHSPHITI 720 (1218)
Q Consensus 648 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 720 (1218)
|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|++... ...++.++|++|++.+++++||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 99999999999999999999999999999999876 48999999987532 1235679999999999999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000937 721 EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgL 800 (1218)
+||+.|+.... ...+..++++++++.++|.+..++.. .+|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 12233456889999999988777664 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 801 DARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 801 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
|+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|+++..|+++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 217 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLE-DGRVAAAGPIA 217 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEEECCHH
Confidence 999999999999999876 899999999985 6677899999998 59999999864
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=333.67 Aligned_cols=221 Identities=21% Similarity=0.287 Sum_probs=178.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~ 692 (1218)
.++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|+.+ |. +.+|+|.++
T Consensus 4 ~l~~~nl~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 69 (252)
T PRK14256 4 KVKLEQLNVHFG--------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLD 69 (252)
T ss_pred EEEEEEEEEEeC--------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEEC
Confidence 478999998873 2469999999999999999999999999999999999864 31 247999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|+++.. ...++.++|++|+..+++.+|++||+.+...... ........++++++++.+++....+.... ..+
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 146 (252)
T PRK14256 70 DTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNA 146 (252)
T ss_pred CEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987632 1345679999999999999999999987643221 11222334567888889988542111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G 223 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MG 223 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CC
Confidence 58999999999999999999999999999999999999999999999975 689999999975 5668899999997 69
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
+++..|+.+
T Consensus 224 ~i~~~~~~~ 232 (252)
T PRK14256 224 DLVECGETK 232 (252)
T ss_pred EEEEeCCHH
Confidence 999998853
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=329.53 Aligned_cols=213 Identities=26% Similarity=0.420 Sum_probs=180.5
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~i~~l~~~~~--------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~ 65 (237)
T TIGR00968 2 EIANISKRFG--------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDAT 65 (237)
T ss_pred EEEEEEEEEC--------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 5788888773 24699999999999999999999999999999999998776 4899999998864
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 QE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. +.||+||+|
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (237)
T TIGR00968 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQ 137 (237)
T ss_pred cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 32 234679999999999999999999987654321 122333456788999999987766654 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++. +|++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 215 (237)
T TIGR00968 138 RVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSP 215 (237)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCH
Confidence 999999999999999999999999999999999999999876 899999999975 5677899999997 6999999886
Q ss_pred C
Q 000937 856 G 856 (1218)
Q Consensus 856 ~ 856 (1218)
+
T Consensus 216 ~ 216 (237)
T TIGR00968 216 D 216 (237)
T ss_pred H
Confidence 4
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=339.70 Aligned_cols=220 Identities=22% Similarity=0.322 Sum_probs=181.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~--------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~ 73 (280)
T PRK13633 4 MIKCKNVSYKYESNEE--------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLD 73 (280)
T ss_pred eEEEeeeEEEcCCCCC--------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEe
Confidence 4789999998852100 0124699999999999999999999999999999999999876 48999999988
Q ss_pred Ccc----ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
+.. ...++.++|++|++. .+...||.||+.|..... .....+..++++++++.+||.+..++.+ .+|
T Consensus 74 i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 145 (280)
T PRK13633 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLL 145 (280)
T ss_pred ccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccC
Confidence 642 224567999999864 233579999998875422 1223344567889999999988777764 489
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|. +|++
T Consensus 146 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~-~~~d~v~~l~-~G~i 222 (280)
T PRK13633 146 SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EA-VEADRIIVMD-SGKV 222 (280)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HH-hcCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999764 999999999986 34 4599999997 5999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
+..|+++
T Consensus 223 ~~~g~~~ 229 (280)
T PRK13633 223 VMEGTPK 229 (280)
T ss_pred EEecCHH
Confidence 9999864
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=338.26 Aligned_cols=219 Identities=21% Similarity=0.315 Sum_probs=181.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCc-eeeEEEECC
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGC-FKGEIKVNG 693 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~-~~G~i~~~g 693 (1218)
..++++|+++.++. ..+++++|+|+++++||+++|+||||||||||+++|+|..+|.. .+|+|.++|
T Consensus 4 ~~l~i~~l~~~~~~------------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g 71 (282)
T PRK13640 4 NIVEFKHVSFTYPD------------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG 71 (282)
T ss_pred ceEEEEEEEEEcCC------------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECC
Confidence 35889999998741 12369999999999999999999999999999999999887631 139999999
Q ss_pred EeCcc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000937 694 YPKIQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769 (1218)
Q Consensus 694 ~~~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 769 (1218)
.+... ...++.+||++|++. .++..||.||+.|..... ....++..++++++++.++|.+..+... +.
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 143 (282)
T PRK13640 72 ITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----AN 143 (282)
T ss_pred EECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----cc
Confidence 98643 123467999999974 667899999998764322 1234444567888999999987777664 58
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|++++|. +|+
T Consensus 144 LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~-~G~ 220 (282)
T PRK13640 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLD-DGK 220 (282)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999865 999999999985 34 6799999997 699
Q ss_pred EEEEcCCC
Q 000937 849 IIYSGPLG 856 (1218)
Q Consensus 849 ~~~~g~~~ 856 (1218)
+++.|+++
T Consensus 221 i~~~g~~~ 228 (282)
T PRK13640 221 LLAQGSPV 228 (282)
T ss_pred EEEeCCHH
Confidence 99999863
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=339.61 Aligned_cols=220 Identities=20% Similarity=0.323 Sum_probs=178.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~l~i~nl~~~~~~~~---------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 74 (289)
T PRK13645 6 DIILDNVSYTYAKKT---------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYA 74 (289)
T ss_pred eEEEEEEEEEeCCCC---------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 478999999884210 0013599999999999999999999999999999999999876 48999999987
Q ss_pred Ccc--------ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 696 KIQ--------ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 696 ~~~--------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
... ...++.++|++|++. .+...|++||+.+..... ....+...++++++++.++|. +..++.+
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~--- 148 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP--- 148 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh---
Confidence 531 224567999999863 223469999998864321 122333345677889999994 5556553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 149 --~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~ 225 (289)
T PRK13645 149 --FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH 225 (289)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 479999999999999999999999999999999999999999999999764 899999999975 5678899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+++
T Consensus 226 -~G~i~~~g~~~ 236 (289)
T PRK13645 226 -EGKVISIGSPF 236 (289)
T ss_pred -CCEEEEeCCHH
Confidence 59999988753
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=331.48 Aligned_cols=219 Identities=21% Similarity=0.257 Sum_probs=175.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-CceeeEEEECCEe
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS-GCFKGEIKVNGYP 695 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~-~~~~G~i~~~g~~ 695 (1218)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+.+|+|.++|++
T Consensus 3 ~~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~ 68 (246)
T PRK14269 3 AKTTNLNLFYG--------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD 68 (246)
T ss_pred eeeeeeEEEEC--------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEe
Confidence 57889988873 24699999999999999999999999999999999998642 2358999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
+.. ...++.++|++|++.+++ .|++||+.+....+... .......++++++++.+++......... ...+.|||
T Consensus 69 i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~ 145 (246)
T PRK14269 69 VKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSG 145 (246)
T ss_pred cccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCH
Confidence 643 234567999999988887 69999998865332110 0122334557788999998532111111 11357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++|. +|+++..
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~ 222 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFH-LGELIEF 222 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEE-CCEEEEE
Confidence 999999999999999999999999999999999999999999865 899999999975 5677899999998 6999999
Q ss_pred cCC
Q 000937 853 GPL 855 (1218)
Q Consensus 853 g~~ 855 (1218)
|+.
T Consensus 223 g~~ 225 (246)
T PRK14269 223 GES 225 (246)
T ss_pred CCH
Confidence 875
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=324.40 Aligned_cols=189 Identities=26% Similarity=0.388 Sum_probs=161.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc---c----ccccceEEEeccCCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI---Q----ETFVRVSGYCEQTDIHS 715 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~~v~q~~~~~ 715 (1218)
+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 4699999999999999999999999999999999999876 4899999998742 1 12346799999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000937 716 PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDE 795 (1218)
Q Consensus 716 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDE 795 (1218)
+.+|++||+.+..... .....+..+.++++++.+++.+..++.+ .+||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 1223334566888999999987777664 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 796 PTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 796 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
||+|||+.++..+.+.|++++++|+|+|++||++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999877999999999974 45788988764
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=324.82 Aligned_cols=191 Identities=25% Similarity=0.408 Sum_probs=163.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-------ccccceEEEeccCCCCCCCCCH
Q 000937 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-------ETFVRVSGYCEQTDIHSPHITI 720 (1218)
Q Consensus 648 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 720 (1218)
|+|+++++ |+++|+||||||||||+++|+|..+| .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 99999999999999999999999876 48999999987531 1234679999999999999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000937 721 EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgL 800 (1218)
+||+.+..... .....+++++++++.+++.+..+..+ .+||||||||++||++|+.+|++++|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 12233456788999999987666553 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 801 DARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 801 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVME-DGRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 999999999999999876 899999999975 5667899999998 58988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=374.01 Aligned_cols=215 Identities=27% Similarity=0.444 Sum_probs=179.8
Q ss_pred CceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC
Q 000937 613 QPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVN 692 (1218)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~ 692 (1218)
..-.++++|++|.+.. ....+|+|+|++|+|||.+||+|+||||||||+|+|+|+++| .+|+|++|
T Consensus 468 ~~g~I~~~nvsf~y~~------------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~~d 533 (709)
T COG2274 468 LQGEIEFENVSFRYGP------------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRILLD 533 (709)
T ss_pred cCceEEEEEEEEEeCC------------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEEC
Confidence 4457999999999963 223699999999999999999999999999999999999987 48999999
Q ss_pred CEeCc---cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH-------cCCCccccccc
Q 000937 693 GYPKI---QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKT-------IELDGIKESLV 762 (1218)
Q Consensus 693 g~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~~~ 762 (1218)
|.+.. ....|+.+|||+|++.++. -|++||+.++. +..+.++ +.++++. ..+..-.|+.+
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t~v 603 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEE----IIEAAQLAGAHEFIENLPMGYDTPV 603 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhccccccccc
Confidence 99854 3567899999999988765 69999998742 2222222 2222222 24455577888
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
|..+ .+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|.++. +|+|+|+++|+++ ..+.+|++++
T Consensus 604 ~E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiV 679 (709)
T COG2274 604 GEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIV 679 (709)
T ss_pred ccCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEE
Confidence 8765 5799999999999999999999999999999999999999999999985 4799999999874 6899999999
Q ss_pred EecCCEEEEEcCCC
Q 000937 843 LKTGGRIIYSGPLG 856 (1218)
Q Consensus 843 l~~~G~~~~~g~~~ 856 (1218)
|+ +|+++.+|+.+
T Consensus 680 l~-~Gkiv~~gs~~ 692 (709)
T COG2274 680 LD-QGKIVEQGSHE 692 (709)
T ss_pred cc-CCceeccCCHH
Confidence 98 69999999974
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=334.69 Aligned_cols=215 Identities=23% Similarity=0.285 Sum_probs=175.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
..++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|+.++. +.+|+|.+
T Consensus 12 ~~l~i~nl~~~~~--------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~ 77 (269)
T PRK14259 12 IIISLQNVTISYG--------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLF 77 (269)
T ss_pred ceEEEEeEEEEEC--------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 4689999999873 246999999999999999999999999999999999986521 25899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 762 (1218)
+|.++.. ...++.++|++|++.+++ .||+||+.+.+..+. .. ....+.++++++.+++.. ..+..
T Consensus 78 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~- 151 (269)
T PRK14259 78 DGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES- 151 (269)
T ss_pred CCEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC-
Confidence 9987531 234567999999988887 499999988754321 11 123345677888887742 23333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 152 ----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~ 225 (269)
T PRK14259 152 ----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAF 225 (269)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEE
Confidence 358999999999999999999999999999999999999999999999864 799999999985 67789999999
Q ss_pred Eec----------CCEEEEEcCC
Q 000937 843 LKT----------GGRIIYSGPL 855 (1218)
Q Consensus 843 l~~----------~G~~~~~g~~ 855 (1218)
|.+ .|++++.|++
T Consensus 226 l~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 226 FNAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred EeccccccccccccceEEEeCCH
Confidence 984 2678888876
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=328.13 Aligned_cols=212 Identities=23% Similarity=0.332 Sum_probs=176.9
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. + ..|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.
T Consensus 2 l~~~~l~~~~~~--------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 63 (232)
T PRK10771 2 LKLTDITWLYHH--------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDH 63 (232)
T ss_pred eEEEEEEEEECC--------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeec
Confidence 578899988741 1 2389999999999999999999999999999999876 489999999875
Q ss_pred ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 697 IQE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 697 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
... ..++.++|++|++.+++.+|+.||+.+..... .. ..+...++++++++.+++.+..++.+ ..||||||
T Consensus 64 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 135 (232)
T PRK10771 64 TTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LK-LNAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQR 135 (232)
T ss_pred CcCChhhccEEEEecccccccCCcHHHHHhcccccc--cC-CCHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHH
Confidence 431 22456999999999999999999998753211 01 12233456888999999987777764 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcC
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 854 (1218)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|++++.|+
T Consensus 136 qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~g~ 213 (232)
T PRK10771 136 QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVA-DGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCC
Confidence 9999999999999999999999999999999999999998764 899999999985 5667899999998 599999987
Q ss_pred CC
Q 000937 855 LG 856 (1218)
Q Consensus 855 ~~ 856 (1218)
.+
T Consensus 214 ~~ 215 (232)
T PRK10771 214 TD 215 (232)
T ss_pred HH
Confidence 53
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=317.01 Aligned_cols=190 Identities=51% Similarity=0.869 Sum_probs=162.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCFKGEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~--~~~~~~G~i~~~g 693 (1218)
.++++|+++.++... ....+.+++|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~--------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g 72 (194)
T cd03213 3 TLSFRNLTVTVKSSP--------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLING 72 (194)
T ss_pred EEEEEeeEEEEecCC--------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECC
Confidence 578999999885210 001246999999999999999999999999999999999987 65 489999999
Q ss_pred EeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 694 YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 694 ~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
++......++.++|++|++.+++.+|++||+.+..... .||||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G 115 (194)
T cd03213 73 RPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGG 115 (194)
T ss_pred EeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHH
Confidence 98654345677999999998899999999997642100 49999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|+++.++.+.+|++++|. +|++++.|
T Consensus 116 ~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~-~G~i~~~~ 194 (194)
T cd03213 116 ERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLS-QGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEe-CCEEEecC
Confidence 99999999999999999999999999999999999999999987799999999998645778899999998 58988654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=326.95 Aligned_cols=212 Identities=23% Similarity=0.364 Sum_probs=178.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.+. . ++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~ 64 (235)
T cd03299 2 KVENLSKDWK--------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDIT 64 (235)
T ss_pred eeEeEEEEeC--------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcC
Confidence 5677777662 1 379999999999999999999999999999999998876 4899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 698 QE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 698 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.. ..++.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (235)
T cd03299 65 NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQ 136 (235)
T ss_pred cCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHH
Confidence 31 23467999999999999999999998764322 1122334456778899999987777664 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.+|++++|. +|+++..|+.
T Consensus 137 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 214 (235)
T cd03299 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIML-NGKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 999999999999999999999999999999999999998765 999999999985 5677899999997 5899999875
Q ss_pred C
Q 000937 856 G 856 (1218)
Q Consensus 856 ~ 856 (1218)
+
T Consensus 215 ~ 215 (235)
T cd03299 215 E 215 (235)
T ss_pred H
Confidence 3
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=328.37 Aligned_cols=200 Identities=27% Similarity=0.433 Sum_probs=168.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc--ccccceEEEec-cCCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ--ETFVRVSGYCE-QTDIHSPHI 718 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~l 718 (1218)
.+++|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+... ...++.++|++ |++.+++.+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 45799999999999999999999999999999999998876 48999999987432 23456789997 556778899
Q ss_pred CHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
|++|++.+...... ....+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||+
T Consensus 111 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 111 PVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99999988654321 223334456778899999987777764 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 799 GLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVID-KGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEecC
Confidence 99999999999999999765 899999999975 5667899999997 58988654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=335.63 Aligned_cols=217 Identities=21% Similarity=0.343 Sum_probs=181.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++
T Consensus 4 ~l~~~~l~~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 70 (277)
T PRK13642 4 ILEVENLVFKYEKE-----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGEL 70 (277)
T ss_pred eEEEEEEEEEcCCC-----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEE
Confidence 47899999988421 123599999999999999999999999999999999999876 48999999988
Q ss_pred Ccc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDI-HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+.. ...++.++|++|++. .++..||.||+.+..... ....++..++++++++.+++.+..++.+ ..||
T Consensus 71 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (277)
T PRK13642 71 LTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLS 142 (277)
T ss_pred CCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 643 234567999999974 577789999998764321 1223334456788999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|. +|+++
T Consensus 143 ~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~-~G~i~ 219 (277)
T PRK13642 143 GGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMK-AGEII 219 (277)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999876 999999999975 34 4699999998 58999
Q ss_pred EEcCCC
Q 000937 851 YSGPLG 856 (1218)
Q Consensus 851 ~~g~~~ 856 (1218)
..|+++
T Consensus 220 ~~g~~~ 225 (277)
T PRK13642 220 KEAAPS 225 (277)
T ss_pred EeCCHH
Confidence 999863
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=332.79 Aligned_cols=216 Identities=21% Similarity=0.297 Sum_probs=176.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~ 692 (1218)
.++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ |. +.+|+|.++
T Consensus 12 ~l~i~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~ 77 (259)
T PRK14274 12 VYQINGMNLWYG--------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYN 77 (259)
T ss_pred eEEEeeEEEEEC--------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEEC
Confidence 589999999873 2469999999999999999999999999999999999865 21 147999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc----cccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI----KESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~ 763 (1218)
|++... ...++.++|++|++.+++. ||+||+.+...... .....+..++++++++.+++.+. .+..
T Consensus 78 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~-- 152 (259)
T PRK14274 78 GSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ-- 152 (259)
T ss_pred CEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCC--
Confidence 997632 1335679999999888875 99999987643321 11223334567788888888532 2332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.+|++++|
T Consensus 153 ---~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 227 (259)
T PRK14274 153 ---ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFF 227 (259)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999865 799999999975 567789999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
. +|+++..|+++
T Consensus 228 ~-~G~i~~~g~~~ 239 (259)
T PRK14274 228 Y-MGELVECNDTN 239 (259)
T ss_pred E-CCEEEEECCHH
Confidence 7 69999999863
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=333.37 Aligned_cols=224 Identities=18% Similarity=0.262 Sum_probs=180.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++++..+... ...+.+++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~~-----~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 76 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGW-----FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHP 76 (267)
T ss_pred eEEEeceEEEecCCCCc-----ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 37899999988421100 000124699999999999999999999999999999999999877 48999999987
Q ss_pred Cccc---cccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 000937 696 KIQE---TFVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSG 769 (1218)
Q Consensus 696 ~~~~---~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~ 769 (1218)
.... ..++.++|++|++. +++.+|+.|++.+...... ........+.++++++.+++. +..+..+ .+
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 149 (267)
T PRK15112 77 LHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HM 149 (267)
T ss_pred CCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hh
Confidence 6421 22356999999874 5678899999987654321 112333445678899999994 4555543 47
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|+
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~-~G~ 227 (267)
T PRK15112 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH-QGE 227 (267)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999865 899999999985 5667799999997 699
Q ss_pred EEEEcCC
Q 000937 849 IIYSGPL 855 (1218)
Q Consensus 849 ~~~~g~~ 855 (1218)
++..|+.
T Consensus 228 i~~~~~~ 234 (267)
T PRK15112 228 VVERGST 234 (267)
T ss_pred EEecCCH
Confidence 9988875
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=364.76 Aligned_cols=220 Identities=25% Similarity=0.364 Sum_probs=185.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||||+|+|..+|. +|+|.++|.+
T Consensus 4 ~i~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~G~i~~~g~~ 67 (501)
T PRK10762 4 LLQLKGIDKAFP--------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD--AGSILYLGKE 67 (501)
T ss_pred eEEEeeeEEEeC--------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEE
Confidence 378999998873 246999999999999999999999999999999999998764 8999999987
Q ss_pred Cccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 696 KIQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 696 ~~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
.... ..++.++|++|++.+++.+||+||+.++...... ......+.+++++++++.+++.+..+..+ .+|
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (501)
T PRK10762 68 VTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GEL 142 (501)
T ss_pred CCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhC
Confidence 5321 1235699999999899999999999886432110 11122333456788999999988777664 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 143 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~-~G~i~ 220 (501)
T PRK10762 143 SIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFR-DGQFI 220 (501)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEE
Confidence 999999999999999999999999999999999999999999999877999999999985 5677899999998 59999
Q ss_pred EEcCCCCC
Q 000937 851 YSGPLGNH 858 (1218)
Q Consensus 851 ~~g~~~~~ 858 (1218)
..|++++.
T Consensus 221 ~~~~~~~~ 228 (501)
T PRK10762 221 AEREVADL 228 (501)
T ss_pred EecCcCcC
Confidence 99987654
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=329.27 Aligned_cols=217 Identities=24% Similarity=0.264 Sum_probs=177.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
+.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.+
T Consensus 3 ~~l~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~ 68 (251)
T PRK14270 3 IKMESKNLNLWYG--------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLL 68 (251)
T ss_pred cEEEEEEeEEEEC--------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEE
Confidence 3578999998773 246999999999999999999999999999999999986541 24899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 762 (1218)
+|.++.. ...++.++|++|++.+++ .|++||+.+...... ........++++++++.+++.+ ..+..
T Consensus 69 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 144 (251)
T PRK14270 69 DGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS- 144 (251)
T ss_pred CCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC-
Confidence 9988632 123567999999988887 899999988654321 1112233456778889988742 22332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 145 ----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~ 218 (251)
T PRK14270 145 ----ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAF 218 (251)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEE
Confidence 358999999999999999999999999999999999999999999999876 689999999975 56778999999
Q ss_pred EecCCEEEEEcCCC
Q 000937 843 LKTGGRIIYSGPLG 856 (1218)
Q Consensus 843 l~~~G~~~~~g~~~ 856 (1218)
+. +|+++..|+++
T Consensus 219 l~-~G~i~~~~~~~ 231 (251)
T PRK14270 219 FL-MGDLIEFNKTE 231 (251)
T ss_pred EE-CCeEEEeCCHH
Confidence 97 69999998863
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=321.35 Aligned_cols=202 Identities=23% Similarity=0.312 Sum_probs=172.7
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|+
T Consensus 10 ~~l~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~ 73 (214)
T PRK13543 10 PLLAAHALAFSRN--------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGK 73 (214)
T ss_pred ceEEEeeEEEecC--------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--CeeEEECCE
Confidence 3578999998763 246999999999999999999999999999999999998774 899999998
Q ss_pred eCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
++.....++.++|++|++.+++.+|+.||+.+....+. ....+.++++++.+++.+..++.+ ..|||||
T Consensus 74 ~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 142 (214)
T PRK13543 74 TATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG------RRAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQ 142 (214)
T ss_pred EccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC------CcHHHHHHHHHHHcCChhhccCCh-----hhCCHHH
Confidence 86533334568999999888888999999988653321 112345678889999987777664 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
|||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++.
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 99999999999999999999999999999999999999999888999999999986 6788899998875
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=328.62 Aligned_cols=215 Identities=24% Similarity=0.316 Sum_probs=175.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 68 (250)
T PRK14240 3 KISVKDLDLFYG--------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLD 68 (250)
T ss_pred eEEEEEEEEEEC--------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 368899998873 236999999999999999999999999999999999975421 148999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|++... ...++.++|++|++.+++ +|+.||+.+...... ........+.++++++.+++.+ ..+..
T Consensus 69 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 143 (250)
T PRK14240 69 GQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS-- 143 (250)
T ss_pred CEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC--
Confidence 988642 123567999999988877 899999998654321 1112234456778888888742 22333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++|
T Consensus 144 ---~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l 218 (250)
T PRK14240 144 ---ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFF 218 (250)
T ss_pred ---CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999854 899999999975 567789999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|+++..|+.
T Consensus 219 ~-~G~i~~~~~~ 229 (250)
T PRK14240 219 L-NGEIVEFGDT 229 (250)
T ss_pred E-CCEEEEeCCH
Confidence 8 5999998875
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=329.19 Aligned_cols=216 Identities=24% Similarity=0.300 Sum_probs=175.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~ 692 (1218)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. +.+|+|.++
T Consensus 5 ~l~~~~l~~~~~--------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~ 70 (252)
T PRK14239 5 ILQVSDLSVYYN--------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYN 70 (252)
T ss_pred eEEEEeeEEEEC--------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEEC
Confidence 478999998873 2469999999999999999999999999999999999743 31 137999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|++... ...++.++|++|++.+++ .||+||+.+....+. ........+.++++++.+++.+ ..+..
T Consensus 71 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 145 (252)
T PRK14239 71 GHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS-- 145 (252)
T ss_pred CEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC--
Confidence 987632 123567999999988877 899999988653321 1112223456777888888743 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 146 ---~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l 220 (252)
T PRK14239 146 ---ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFF 220 (252)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999865 699999999975 567889999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
. +|++++.|+.+
T Consensus 221 ~-~G~i~~~g~~~ 232 (252)
T PRK14239 221 L-DGDLIEYNDTK 232 (252)
T ss_pred E-CCEEEEeCCHH
Confidence 8 59999998753
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=328.76 Aligned_cols=219 Identities=22% Similarity=0.266 Sum_probs=175.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 68 (249)
T PRK14253 3 KFNIENLDLFYG--------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMD 68 (249)
T ss_pred eEEEeccEEEEC--------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEEC
Confidence 467899998773 246999999999999999999999999999999999987642 248999999
Q ss_pred CEeCcc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCC
Q 000937 693 GYPKIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 693 g~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 768 (1218)
|.++.. ...++.++|++|++.+++ .||.||+.+...... ........+++.+.++.+++.+....... ..+.
T Consensus 69 g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 144 (249)
T PRK14253 69 GEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAF 144 (249)
T ss_pred CEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCcc
Confidence 987531 234567999999988887 899999987643221 11122334556777888887532111111 1135
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
+|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|+
T Consensus 145 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~-~G~ 221 (249)
T PRK14253 145 GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFL-MGE 221 (249)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999976 689999999985 5677899999998 599
Q ss_pred EEEEcCC
Q 000937 849 IIYSGPL 855 (1218)
Q Consensus 849 ~~~~g~~ 855 (1218)
++..|+.
T Consensus 222 i~~~g~~ 228 (249)
T PRK14253 222 LVEHDDT 228 (249)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=340.92 Aligned_cols=212 Identities=25% Similarity=0.402 Sum_probs=177.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
-.++|+|+++.+. +++++|+++||+|++||-+||+|+|||||||++|+|.+..+. +|+|++||+
T Consensus 350 ~~I~F~dV~f~y~-------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~---sG~I~IdG~ 413 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG-------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY---SGSILIDGQ 413 (591)
T ss_pred CcEEEEeeEEEeC-------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc---CCcEEECCe
Confidence 3589999999985 235699999999999999999999999999999999998773 899999999
Q ss_pred eCc---cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCC-------CccccccccC
Q 000937 695 PKI---QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-------DGIKESLVGI 764 (1218)
Q Consensus 695 ~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~ 764 (1218)
++. .+..|+.+|||||+..+|. -||.+|+.|+. +..+. +.+.++.+..++ ++-..|.+|.
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASD----EEVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCH----HHHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 864 3567889999999887765 69999999863 22222 234444444444 4456777887
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..|||||||||+||||++.||+|+++|||||.||.++..++++.+.+ ...|+|+|++.|+. +....||++++++
T Consensus 484 rG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l--~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRL--DLLKDFDKIIVLD 559 (591)
T ss_pred cc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecc--hhHhcCCEEEEEE
Confidence 76 46999999999999999999999999999999999999999999998 34689999999986 5689999999998
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
+|++...|+.++
T Consensus 560 -nG~v~e~gth~e 571 (591)
T KOG0057|consen 560 -NGTVKEYGTHSE 571 (591)
T ss_pred -CCeeEEeccHHH
Confidence 599999998643
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=364.81 Aligned_cols=219 Identities=25% Similarity=0.332 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+|+|+|..+| .+|+|.++|++
T Consensus 5 ~l~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~ 68 (510)
T PRK09700 5 YISMAGIGKSFG--------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNIN 68 (510)
T ss_pred eEEEeeeEEEcC--------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEE
Confidence 478999998873 24699999999999999999999999999999999999876 48999999987
Q ss_pred Cccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhcc-CCC---CChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 696 KIQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRL-APQ---INSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 696 ~~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
.... ..++.++|++|++.+++.+||+||+.++..... ... ....+..++++++++.+|+.+..++.+
T Consensus 69 i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 143 (510)
T PRK09700 69 YNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV----- 143 (510)
T ss_pred CCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----
Confidence 6421 123569999999989999999999987532110 001 112234466888999999987777765
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|++++|. +|
T Consensus 144 ~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~-~G 221 (510)
T PRK09700 144 ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMK-DG 221 (510)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 479999999999999999999999999999999999999999999999888999999999975 5667899999998 59
Q ss_pred EEEEEcCCCC
Q 000937 848 RIIYSGPLGN 857 (1218)
Q Consensus 848 ~~~~~g~~~~ 857 (1218)
++++.|++++
T Consensus 222 ~i~~~g~~~~ 231 (510)
T PRK09700 222 SSVCSGMVSD 231 (510)
T ss_pred EEeeecchhh
Confidence 9999998765
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=322.10 Aligned_cols=211 Identities=25% Similarity=0.397 Sum_probs=176.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.+... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~~~----------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~ 69 (220)
T TIGR02982 2 ISIRNLNHYYGHG----------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQEL 69 (220)
T ss_pred EEEEEEEEEccCC----------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEh
Confidence 5788999877310 1125799999999999999999999999999999999998876 489999999875
Q ss_pred ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000937 697 IQE------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L 770 (1218)
... ..++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++.+..+..+ ++|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~l 142 (220)
T TIGR02982 70 YGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNL 142 (220)
T ss_pred HhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhC
Confidence 321 235679999999999999999999998654321 1223344567889999999987766654 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|+|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ +.+.+|++++|. +|++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~-~g~~ 219 (220)
T TIGR02982 143 SGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHME-DGKL 219 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEE-CCEE
Confidence 99999999999999999999999999999999999999999999976 4899999999974 568899999997 5775
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=330.23 Aligned_cols=216 Identities=24% Similarity=0.298 Sum_probs=176.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~--------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~ 69 (258)
T PRK11701 6 LLSVRGLTKLYG--------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRD 69 (258)
T ss_pred eEEEeeeEEEcC--------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCcc
Confidence 478999998873 24699999999999999999999999999999999998876 48999999987
Q ss_pred -----Cccc---c----ccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccc
Q 000937 696 -----KIQE---T----FVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKES 760 (1218)
Q Consensus 696 -----~~~~---~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~ 760 (1218)
+... . .++.++|++|+.. +.+.+|+.||+.+...... .....+..+.+.++++.+++.+ ..++
T Consensus 70 ~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 147 (258)
T PRK11701 70 GQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD 147 (258)
T ss_pred ccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC
Confidence 4321 1 2346999999973 5678899999976432111 1112233456788899999863 4454
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhce
Q 000937 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 761 ~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|+
T Consensus 148 ~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~ 221 (258)
T PRK11701 148 L-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHR 221 (258)
T ss_pred C-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCE
Confidence 4 3589999999999999999999999999999999999999999999998765 899999999975 45568999
Q ss_pred EEEEecCCEEEEEcCCC
Q 000937 840 LILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~~ 856 (1218)
+++|. +|++++.|+++
T Consensus 222 i~~l~-~g~i~~~~~~~ 237 (258)
T PRK11701 222 LLVMK-QGRVVESGLTD 237 (258)
T ss_pred EEEEE-CCEEEEeCCHH
Confidence 99997 59999998763
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=329.83 Aligned_cols=217 Identities=22% Similarity=0.290 Sum_probs=177.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-c--eeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-C--FKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~--~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+.++. + .+|+|.++
T Consensus 7 ~l~~~~l~~~~~--------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~ 72 (259)
T PRK14260 7 AIKVKDLSFYYN--------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFF 72 (259)
T ss_pred eEEEEEEEEEEC--------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEEC
Confidence 478999998873 246999999999999999999999999999999999987642 1 47999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|+++.. ...++.++|++|++.+++ .|++||+.+....+. ........+.++++++.+++.+ ..+..
T Consensus 73 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 147 (259)
T PRK14260 73 GQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS-- 147 (259)
T ss_pred CEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC--
Confidence 987532 123457999999988887 899999987654321 1122233456778888888742 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 148 ---~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l 222 (259)
T PRK14260 148 ---ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFF 222 (259)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 458999999999999999999999999999999999999999999999865 699999999986 677889999999
Q ss_pred ec----CCEEEEEcCCC
Q 000937 844 KT----GGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~----~G~~~~~g~~~ 856 (1218)
.+ +|++++.|++.
T Consensus 223 ~~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 223 STDESRIGQMVEFGVTT 239 (259)
T ss_pred eccCCCCceEEEeCCHH
Confidence 73 49999999863
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=324.40 Aligned_cols=210 Identities=22% Similarity=0.335 Sum_probs=172.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+. ++++++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 7 ~i~~~~l~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~ 70 (225)
T PRK10247 7 LLQLQNVGYLAG--------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGED 70 (225)
T ss_pred eEEEeccEEeeC--------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEE
Confidence 578999998873 24699999999999999999999999999999999998776 48999999987
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCCCCCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LS 771 (1218)
... ...++.++|++|++.+++ .|++||+.+....+. . ....++++++++.+++. ...++.+ ..||
T Consensus 71 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~---~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 139 (225)
T PRK10247 71 ISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRN--Q---QPDPAIFLDDLERFALPDTILTKNI-----AELS 139 (225)
T ss_pred cCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcC--C---ChHHHHHHHHHHHcCCChHHhcCCc-----ccCC
Confidence 532 223567899999988876 599999987543321 1 11234567899999995 3455543 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++ +.+|++++|.+++..+
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~ 217 (225)
T PRK10247 140 GGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEM 217 (225)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchH
Confidence 99999999999999999999999999999999999999999998764 899999999985 34 5799999996445555
Q ss_pred EEcC
Q 000937 851 YSGP 854 (1218)
Q Consensus 851 ~~g~ 854 (1218)
.+|.
T Consensus 218 ~~~~ 221 (225)
T PRK10247 218 QEAR 221 (225)
T ss_pred hhhh
Confidence 5554
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=327.71 Aligned_cols=220 Identities=23% Similarity=0.307 Sum_probs=176.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.++
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~ 68 (250)
T PRK14262 3 IIEIENFSAYYG--------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFK 68 (250)
T ss_pred eEEEEeeEEEeC--------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEEC
Confidence 378999998873 246899999999999999999999999999999999986531 248999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|.+... ...++.++|++|++.+++ .|++||+.+...... .......++.+++.++.+++.+..+... +..+
T Consensus 69 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 144 (250)
T PRK14262 69 GQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPG 144 (250)
T ss_pred CEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCCh
Confidence 987532 123567999999988887 899999988653321 1112233455678888888853211111 1124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++. +|
T Consensus 145 ~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~-~G 221 (250)
T PRK14262 145 TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMY-RG 221 (250)
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 58999999999999999999999999999999999999999999999865 799999999975 5678899999998 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
+++..|+++
T Consensus 222 ~i~~~g~~~ 230 (250)
T PRK14262 222 ELIEYGPTR 230 (250)
T ss_pred EEEEecCHH
Confidence 999998753
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=331.16 Aligned_cols=217 Identities=23% Similarity=0.302 Sum_probs=177.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.+
T Consensus 24 ~~l~~~nl~~~~~--------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i 89 (272)
T PRK14236 24 TALEVRNLNLFYG--------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89 (272)
T ss_pred cEEEEEEEEEEEC--------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence 3588999999873 236999999999999999999999999999999999986531 25899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 762 (1218)
+|.+... ...++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+ ..+..
T Consensus 90 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 165 (272)
T PRK14236 90 DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN- 165 (272)
T ss_pred CCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC-
Confidence 9988642 1245679999999888875 99999987653321 1112223455778888888853 22322
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 166 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~ 239 (272)
T PRK14236 166 ----AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAF 239 (272)
T ss_pred ----cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEE
Confidence 358999999999999999999999999999999999999999999999976 799999999975 56778999999
Q ss_pred EecCCEEEEEcCCC
Q 000937 843 LKTGGRIIYSGPLG 856 (1218)
Q Consensus 843 l~~~G~~~~~g~~~ 856 (1218)
|. +|+++..|+.+
T Consensus 240 l~-~G~i~~~g~~~ 252 (272)
T PRK14236 240 MY-MGKLVEYGDTD 252 (272)
T ss_pred EE-CCEEEecCCHH
Confidence 98 59999998753
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=328.06 Aligned_cols=213 Identities=20% Similarity=0.279 Sum_probs=174.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG--CFKGEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~--~~~G~i~~~g 693 (1218)
.++++|+++.++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~---------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 4 QIELRNIALQAA---------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred EEEEeCeEEEec---------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 578999998761 25899999999999999999999999999999999987751 1489999999
Q ss_pred EeCccccc-cceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc---cccccccCCCC
Q 000937 694 YPKIQETF-VRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG---IKESLVGIPGV 767 (1218)
Q Consensus 694 ~~~~~~~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~ 767 (1218)
+++..... ++.++|++|++. +.+..|+.+++.+.+.... .. ...+.+.++++.+++.+ ..++. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KP--ADDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CC--hHHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 88643222 356999999974 4567899999876543211 11 12356788999999976 23443 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
.+|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~-~ 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMS-H 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 589999999999999999999999999999999999999999999999765 899999999975 5667899999997 6
Q ss_pred CEEEEEcCC
Q 000937 847 GRIIYSGPL 855 (1218)
Q Consensus 847 G~~~~~g~~ 855 (1218)
|+++..|++
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 999998875
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=332.71 Aligned_cols=220 Identities=23% Similarity=0.404 Sum_probs=176.1
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.
T Consensus 5 ~~l~~~~l~~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~ 69 (272)
T PRK15056 5 AGIVVNDVTVTWR-------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQ 69 (272)
T ss_pred ceEEEEeEEEEec-------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCE
Confidence 3588999998873 124699999999999999999999999999999999999876 4899999998
Q ss_pred eCccccccceEEEeccCCCCC--CCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 695 PKIQETFVRVSGYCEQTDIHS--PHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+......++.++|++|++.+. ...+++|++.++...... .........+.++++++.+++.+..++.+ ..||
T Consensus 70 ~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS 144 (272)
T PRK15056 70 PTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELS 144 (272)
T ss_pred EhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCC
Confidence 864322234699999987542 235788988653210000 00111223456778899999987777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ +|++++
T Consensus 145 gG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~--~G~i~~ 221 (272)
T PRK15056 145 GGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV--KGTVLA 221 (272)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE--CCEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 567788988655 489999
Q ss_pred EcCCCC
Q 000937 852 SGPLGN 857 (1218)
Q Consensus 852 ~g~~~~ 857 (1218)
.|++++
T Consensus 222 ~g~~~~ 227 (272)
T PRK15056 222 SGPTET 227 (272)
T ss_pred ecCHHh
Confidence 998754
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=327.60 Aligned_cols=221 Identities=22% Similarity=0.298 Sum_probs=175.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~ 691 (1218)
+.-+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +. +.+|+|.+
T Consensus 4 ~~~~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 69 (251)
T PRK14244 4 IHASVKNLNLWYG--------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDI 69 (251)
T ss_pred eEEEeeeEEEEEC--------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEE
Confidence 3446788888773 2469999999999999999999999999999999999865 21 25899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCC
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
+|+++.. ...++.++|++|++.+++. |+.||+.+....+. .........+.++++++.+++.+........ .
T Consensus 70 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~ 146 (251)
T PRK14244 70 DGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-S 146 (251)
T ss_pred CCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-C
Confidence 9987532 1235679999999888875 99999988643321 1111223345577889999986522111111 1
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
+.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++.+.+|++++|. +
T Consensus 147 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~-~ 223 (251)
T PRK14244 147 AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQ-S 223 (251)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEE-C
Confidence 35899999999999999999999999999999999999999999999985 4899999999975 5667899999998 5
Q ss_pred CEEEEEcCC
Q 000937 847 GRIIYSGPL 855 (1218)
Q Consensus 847 G~~~~~g~~ 855 (1218)
|+++..|++
T Consensus 224 G~i~~~~~~ 232 (251)
T PRK14244 224 GRIVEYNTT 232 (251)
T ss_pred CEEEEeCCH
Confidence 899998875
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=303.26 Aligned_cols=204 Identities=24% Similarity=0.431 Sum_probs=180.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHI 718 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~l 718 (1218)
.+.+|+|+|..|++|.+++++|||||||||||.+++.+.+.+ +|+|.++|.++.. ....+.++..-|+......+
T Consensus 13 ~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d--~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rl 90 (252)
T COG4604 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD--SGEITIDGLELTSTPSKELAKKLSILKQENHINSRL 90 (252)
T ss_pred CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc--CceEEEeeeecccCChHHHHHHHHHHHhhchhhhee
Confidence 468999999999999999999999999999999999988764 8999999998643 34556678888999888999
Q ss_pred CHHHHHHHHHhhccCCC--CChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000937 719 TIEESLFFSAWLRLAPQ--INSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEP 796 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEP 796 (1218)
||+|-+.|+. .|-+ ....+.+..+++.++.++|.++.|+.. .+||||||||.-||+.|+++.+.++||||
T Consensus 91 TV~dLv~FGR---fPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 91 TVRDLVGFGR---FPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred EHHHHhhcCC---CcccCCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCc
Confidence 9999999973 3322 234566778999999999999999875 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 797 TTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 797 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
.++||...+.++++.|++++++ |+||+++.||.+. ...+.|.++.|+ +|+++..|++++
T Consensus 163 LNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK-~G~vv~~G~~~e 222 (252)
T COG4604 163 LNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALK-NGKVVKQGSPDE 222 (252)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeec-CCEEEecCCHHH
Confidence 9999999999999999999987 9999999999874 456789999998 599999999875
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=327.24 Aligned_cols=217 Identities=23% Similarity=0.296 Sum_probs=175.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCc---eeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGC---FKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~---~~G~i~~~ 692 (1218)
.+.++|+++.++ ++.+++|+|+++++||+++|+||||||||||+|+|+|..+|.+ .+|+|.++
T Consensus 4 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 69 (252)
T PRK14272 4 LLSAQDVNIYYG--------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLD 69 (252)
T ss_pred EEEEeeeEEEEC--------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEEC
Confidence 578899998873 2469999999999999999999999999999999999876532 37999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC----cccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD----GIKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~ 763 (1218)
|.+... ...++.++|++|++.+++.+|+.||+.+...... ....++..+.+++.++.+++. +..++.
T Consensus 70 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 145 (252)
T PRK14272 70 GQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP-- 145 (252)
T ss_pred CEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC--
Confidence 987632 1335679999999999999999999987643221 111222345566667777653 223333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 146 ---~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 220 (252)
T PRK14272 146 ---ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFF 220 (252)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999864 799999999985 566789999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
. +|++++.|+++
T Consensus 221 ~-~G~i~~~~~~~ 232 (252)
T PRK14272 221 L-VGDLVEHGPTD 232 (252)
T ss_pred E-CCEEEEeCCHH
Confidence 8 58999998753
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=329.15 Aligned_cols=222 Identities=21% Similarity=0.271 Sum_probs=178.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ..+|+|.++
T Consensus 7 ~l~~~nl~~~~~--------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~ 72 (261)
T PRK14258 7 AIKVNNLSFYYD--------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFF 72 (261)
T ss_pred eEEEeeEEEEeC--------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEEC
Confidence 478999999873 236899999999999999999999999999999999987652 137999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|+++.. ...++.++|++|+..+++ .|+.||+.+...... .....+..+.+.++++.+++.+..+...+ ..+
T Consensus 73 g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 148 (261)
T PRK14258 73 NQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSA 148 (261)
T ss_pred CEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCc
Confidence 987531 123567999999988887 899999987643221 01222334567888899988542211111 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.+|++++|.++
T Consensus 149 ~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~ 227 (261)
T PRK14258 149 LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGN 227 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccC
Confidence 58999999999999999999999999999999999999999999999875 4899999999985 677889999999732
Q ss_pred ----CEEEEEcCCC
Q 000937 847 ----GRIIYSGPLG 856 (1218)
Q Consensus 847 ----G~~~~~g~~~ 856 (1218)
|++++.|+++
T Consensus 228 ~~~~G~i~~~~~~~ 241 (261)
T PRK14258 228 ENRIGQLVEFGLTK 241 (261)
T ss_pred CCcCceEEEeCCHH
Confidence 8999999863
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=325.08 Aligned_cols=201 Identities=25% Similarity=0.334 Sum_probs=166.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECCEeCccccc-cceEEEeccCCC--CCCCCC
Q 000937 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG--CFKGEIKVNGYPKIQETF-VRVSGYCEQTDI--HSPHIT 719 (1218)
Q Consensus 645 iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~lT 719 (1218)
+++|+|+++++||+++|+||||||||||+|+|+|..+|. +.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999987751 138999999988643222 357999999974 557799
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG---IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEP 796 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEP 796 (1218)
+.|++.+...... .......++++++++.+++.+ ..+.. +..|||||||||+|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 112233456888999999973 34444 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 797 TTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 797 tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|. +|+++..|++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMD-DGRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999875 899999999985 5667899999997 5999998875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=329.43 Aligned_cols=221 Identities=23% Similarity=0.322 Sum_probs=178.7
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~ 691 (1218)
..+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +.+|+|.+
T Consensus 20 ~~l~i~nl~~~~~--------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~ 85 (276)
T PRK14271 20 PAMAAVNLTLGFA--------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLL 85 (276)
T ss_pred cEEEEeeEEEEEC--------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEE
Confidence 3579999999884 246999999999999999999999999999999999987642 25899999
Q ss_pred CCEeCcc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 692 NGYPKIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 692 ~g~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
+|.++.. ...++.++|++|++.+++ .|++||+.+..... ......+..+.+.++++.+++.+..+.... ..+
T Consensus 86 ~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~ 161 (276)
T PRK14271 86 GGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSP 161 (276)
T ss_pred CCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCc
Confidence 9987532 134567999999988887 89999998764321 111233334456778888888643221111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|. +|
T Consensus 162 ~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~-~G 238 (276)
T PRK14271 162 FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFF-DG 238 (276)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 58999999999999999999999999999999999999999999999876 589999999975 5677899999998 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
+++..|+++
T Consensus 239 ~i~~~g~~~ 247 (276)
T PRK14271 239 RLVEEGPTE 247 (276)
T ss_pred EEEEeCCHH
Confidence 999998853
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=317.89 Aligned_cols=194 Identities=25% Similarity=0.318 Sum_probs=163.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~ 65 (204)
T PRK13538 2 LEARNLACERD--------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPI 65 (204)
T ss_pred eEEEEEEEEEC--------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEc
Confidence 56788888773 24699999999999999999999999999999999998876 489999999875
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.++|++|++.+++.+|+.||+.+...... ....++++++++.+|+.+..++.+ ..|||||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 134 (204)
T PRK13538 66 RRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG------PGDDEALWEALAQVGLAGFEDVPV-----RQLSAGQ 134 (204)
T ss_pred ccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC------ccHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHH
Confidence 42 2345678999999988999999999988653321 123356788999999987666654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ....|+.
T Consensus 135 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~ 197 (204)
T PRK13538 135 QRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL--PVASDKV 197 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh--hhccCCc
Confidence 99999999999999999999999999999999999999999877999999999975 3444543
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=329.49 Aligned_cols=215 Identities=20% Similarity=0.281 Sum_probs=174.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--S-GCFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~-~~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ + .+.+|+|.++
T Consensus 21 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 86 (268)
T PRK14248 21 ILEVKDLSIYYG--------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYE 86 (268)
T ss_pred eEEEEEEEEEeC--------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEEC
Confidence 478999999873 2469999999999999999999999999999999999743 1 1248999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|++... ...++.++|++|++.+++. |+.||+.+...... ........+.+.+.++.+++.+ ..+..
T Consensus 87 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 161 (268)
T PRK14248 87 GLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS-- 161 (268)
T ss_pred CEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC--
Confidence 987632 1235679999999888875 99999987643221 1112223445677888888742 22333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 162 ---~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l 236 (268)
T PRK14248 162 ---ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFF 236 (268)
T ss_pred ---cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999965 689999999975 567789999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|++++.|+.
T Consensus 237 ~-~G~i~~~~~~ 247 (268)
T PRK14248 237 L-NGDLVEYDQT 247 (268)
T ss_pred E-CCEEEEeCCH
Confidence 7 5999999875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=341.25 Aligned_cols=230 Identities=25% Similarity=0.430 Sum_probs=195.8
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
.-++.+|++.+++ ..++|+||||++++||++||+|.||||||||+|+|+|.++|+ +|+|.+||+
T Consensus 7 ~ll~~~~i~K~Fg--------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~--~G~I~~~G~ 70 (500)
T COG1129 7 PLLELRGISKSFG--------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD--SGEILIDGK 70 (500)
T ss_pred ceeeeecceEEcC--------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC--CceEEECCE
Confidence 3578999998884 468999999999999999999999999999999999998874 999999999
Q ss_pred eCcc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000937 695 PKIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLA-PQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769 (1218)
Q Consensus 695 ~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 769 (1218)
+... ......++.|+|+..+.|++||.||+.++...+.+ .-...+...+++.++++.+++....+++++ +
T Consensus 71 ~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~ 145 (500)
T COG1129 71 PVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----D 145 (500)
T ss_pred EccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----h
Confidence 8542 22345689999999999999999999877544321 223445566778899999998644677765 7
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
||.||||.|.|||||..+++||+|||||+.|+......+.+.+++++++|.+||++||.++ |+++.||++.+|. +|+.
T Consensus 146 LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlR-DG~~ 223 (500)
T COG1129 146 LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLR-DGRV 223 (500)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEe-CCEE
Confidence 9999999999999999999999999999999999999999999999999999999999996 8999999999998 6999
Q ss_pred EEEcCC-CCC-chhhhhhhh
Q 000937 850 IYSGPL-GNH-SSRVIEYFE 867 (1218)
Q Consensus 850 ~~~g~~-~~~-~~~~~~~f~ 867 (1218)
+..++. ++. .+++++.+-
T Consensus 224 v~~~~~~~~~~~~~lv~~Mv 243 (500)
T COG1129 224 VGTRPTAAETSEDELVRLMV 243 (500)
T ss_pred eeecccccCCCHHHHHHHhh
Confidence 999983 543 344555554
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=294.55 Aligned_cols=205 Identities=23% Similarity=0.363 Sum_probs=171.8
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc-------------cc---cccce
Q 000937 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI-------------QE---TFVRV 704 (1218)
Q Consensus 641 ~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~-------------~~---~~~~~ 704 (1218)
+...+|++||++.+.|+++.|+|.|||||||+|+||.-+.+|. .|.|.+||+.+. .+ ..+..
T Consensus 17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~--~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC--CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 3467999999999999999999999999999999999888874 899999997631 01 12345
Q ss_pred EEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000937 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVEL 784 (1218)
Q Consensus 705 ~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L 784 (1218)
.++|+|+..++.++||.||+.-+..--+ ..++.+..++++..++..|+.+..|... ..|||||+||++|||||
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aIARaL 167 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAIARAL 167 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHHHHHH
Confidence 7999999999999999999875432111 2345666778889999999988777543 47999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 785 VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 785 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.+.. .-+...+++.|. +|.+-.+|+|+
T Consensus 168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh-~G~iEE~G~P~ 237 (256)
T COG4598 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLH-QGKIEEEGPPE 237 (256)
T ss_pred hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEee-cceecccCChH
Confidence 99999999999999999999999999999999999999999997642 233456777776 69999999984
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=361.11 Aligned_cols=212 Identities=21% Similarity=0.350 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|. +|+|.++|.+
T Consensus 11 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~ 74 (510)
T PRK15439 11 LLCARSISKQYS--------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNP 74 (510)
T ss_pred eEEEEeEEEEeC--------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEE
Confidence 488999999883 246999999999999999999999999999999999998764 8999999987
Q ss_pred Cccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+... . .++.++|++|++.+++.+||+||+.+... ...+.+++++++++.+++.+..++.+ .+||
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (510)
T PRK15439 75 CARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP-------KRQASMQKMKQLLAALGCQLDLDSSA-----GSLE 142 (510)
T ss_pred CCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc-------cchHHHHHHHHHHHHcCCCccccCCh-----hhCC
Confidence 5421 1 22458999999999999999999987531 11233456788999999987777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|++++
T Consensus 143 gG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~-~G~i~~ 220 (510)
T PRK15439 143 VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMR-DGTIAL 220 (510)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 5677899999998 599999
Q ss_pred EcCCCC
Q 000937 852 SGPLGN 857 (1218)
Q Consensus 852 ~g~~~~ 857 (1218)
.|++++
T Consensus 221 ~g~~~~ 226 (510)
T PRK15439 221 SGKTAD 226 (510)
T ss_pred ecChHH
Confidence 998754
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=316.95 Aligned_cols=195 Identities=27% Similarity=0.327 Sum_probs=166.1
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..++. +|+|.++|.+..
T Consensus 2 ~i~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 65 (201)
T cd03231 2 EADELTCERD--------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL--AGRVLLNGGPLD 65 (201)
T ss_pred EEEEEEEEeC--------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEecc
Confidence 5678887763 246899999999999999999999999999999999998764 899999998753
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 698 Q--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 698 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
. ...++.++|++|++.+++.+|++||+.+.... ...++++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 131 (201)
T cd03231 66 FQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRPV-----AQLSAGQQ 131 (201)
T ss_pred cccHHhhhheEEeccccccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCch-----hhCCHHHH
Confidence 2 23456799999998888899999999874210 12345788999999987766654 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. +....+++++.+
T Consensus 132 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 132 RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999999999999999999999998878999999999975 567777887765
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=325.64 Aligned_cols=220 Identities=21% Similarity=0.265 Sum_probs=175.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++. +.+|+|.++
T Consensus 4 ~l~~~~l~~~~~--------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 69 (251)
T PRK14249 4 KIKIRGVNFFYH--------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLD 69 (251)
T ss_pred eEEEEEEEEEEC--------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEEC
Confidence 477899998873 246999999999999999999999999999999999987763 136999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|.+... ...++.++|++|++.+++. |++||+.+....+.. ...+...+.++++++.+++.+..+.... ..+
T Consensus 70 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~ 145 (251)
T PRK14249 70 NENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLH-KSG 145 (251)
T ss_pred CEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhh-CCc
Confidence 987532 1345679999999988875 999999886543211 1122233456677777777532111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++.+.+|++++|. +|
T Consensus 146 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~-~G 222 (251)
T PRK14249 146 LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLL-TG 222 (251)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEe-CC
Confidence 5899999999999999999999999999999999999999999999985 5899999999975 5667789999997 68
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
++++.|+++
T Consensus 223 ~i~~~~~~~ 231 (251)
T PRK14249 223 DLVEYGRTG 231 (251)
T ss_pred eEEEeCCHH
Confidence 999998763
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=328.98 Aligned_cols=215 Identities=24% Similarity=0.313 Sum_probs=174.5
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GCFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~ 691 (1218)
..++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|+.++ .+.+|+|.+
T Consensus 38 ~~l~i~~l~~~~~--------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i 103 (285)
T PRK14254 38 TVIEARDLNVFYG--------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTF 103 (285)
T ss_pred ceEEEEEEEEEEC--------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 3588999998873 24699999999999999999999999999999999998652 125899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 762 (1218)
+|.+... ...++.++|++|+..+++. ||.||+.+....+. ... ...++++++++.+++.+ ..+..
T Consensus 104 ~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~- 177 (285)
T PRK14254 104 RGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS- 177 (285)
T ss_pred CCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC-
Confidence 9987532 2345679999999888775 99999988654321 111 23456788899988853 23333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++
T Consensus 178 ----~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v 251 (285)
T PRK14254 178 ----GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAV 251 (285)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEE
Confidence 358999999999999999999999999999999999999999999999976 489999999975 55677899765
Q ss_pred EecCCEEEEEcCC
Q 000937 843 LKTGGRIIYSGPL 855 (1218)
Q Consensus 843 l~~~G~~~~~g~~ 855 (1218)
+.++|+++..|+.
T Consensus 252 ~l~~G~i~~~g~~ 264 (285)
T PRK14254 252 FLTGGELVEFDDT 264 (285)
T ss_pred EeeCCEEEEeCCH
Confidence 4346999998875
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=326.08 Aligned_cols=215 Identities=26% Similarity=0.283 Sum_probs=175.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 6 ~i~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14261 6 ILSTKNLNLWYG--------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYN 71 (253)
T ss_pred eEEEeeeEEEEC--------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEEC
Confidence 578999998873 246999999999999999999999999999999999975431 137999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc----cccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI----KESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~ 763 (1218)
|+++.. ...++.++|++|++.+++. ||+||+.+....+.. ......++.+.++++.+++.+. .++.
T Consensus 72 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 146 (253)
T PRK14261 72 GENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS-- 146 (253)
T ss_pred CEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC--
Confidence 988532 1235679999999888874 999999987543211 1122334567778888887431 2332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 147 ---~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l 221 (253)
T PRK14261 147 ---ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFM 221 (253)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999876 689999999975 566789999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|+++..|++
T Consensus 222 ~-~G~i~~~g~~ 232 (253)
T PRK14261 222 Y-LGKLIEFDKT 232 (253)
T ss_pred E-CCEEEEcCCH
Confidence 7 5999998875
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=359.77 Aligned_cols=220 Identities=20% Similarity=0.360 Sum_probs=181.7
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.++++.+|+|.++|++.
T Consensus 2 l~i~~l~~~~~--------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~ 67 (500)
T TIGR02633 2 LEMKGIVKTFG--------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPL 67 (500)
T ss_pred EEEEeEEEEeC--------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 57889988873 2469999999999999999999999999999999999876522489999999876
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC-CCChhhHHHHHHHHHHHcCCCccc-cccccCCCCCCC
Q 000937 697 IQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-QINSKTKADCVNHVLKTIELDGIK-ESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~L 770 (1218)
... ..++.++|++|++.+++.+||.||+.+........ ....++..++++++++.+++.+.. ++.+ .+|
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 142 (500)
T TIGR02633 68 KASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDY 142 (500)
T ss_pred CCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhC
Confidence 431 12356999999998899999999998864322110 012233345678899999997654 3433 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 143 SgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~-~G~i~ 220 (500)
T TIGR02633 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIR-DGQHV 220 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEe-CCeEe
Confidence 999999999999999999999999999999999999999999999888999999999975 5667899999997 58999
Q ss_pred EEcCCCC
Q 000937 851 YSGPLGN 857 (1218)
Q Consensus 851 ~~g~~~~ 857 (1218)
..|++++
T Consensus 221 ~~~~~~~ 227 (500)
T TIGR02633 221 ATKDMST 227 (500)
T ss_pred eecCccc
Confidence 9998764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=340.74 Aligned_cols=213 Identities=25% Similarity=0.421 Sum_probs=179.6
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|+++.+ ..++|+|+|+++++||.+||+|+||||||||+++|+|-.++. +|+|.+||.+
T Consensus 336 ~l~~~~vsF~y~~~------------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~--~G~i~~~g~~ 401 (573)
T COG4987 336 ALELRNVSFTYPGQ------------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ--QGSITLNGVE 401 (573)
T ss_pred eeeeccceeecCCC------------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC--CCeeeECCcC
Confidence 68999999999742 347999999999999999999999999999999999988874 8999999988
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-------KESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 765 (1218)
+.. ...++.+++++|...+|. -|+++||..+. ++ ...+.+.++++..||.+. .|+.+|+.
T Consensus 402 ~~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~----AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~ 471 (573)
T COG4987 402 IASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PD----ASDEELWAALQQVGLEKLLESAPDGLNTWLGEG 471 (573)
T ss_pred hhhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CC----CCHHHHHHHHHHcCHHHHHHhChhhhhchhccC
Confidence 532 335677899999877664 69999998752 11 223446677888888754 34456665
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
| +.||||||||++|||+|++|.++++|||||.|||+.+++++++.|.+-++ |+|+|++||+.. -.+.||++++|+
T Consensus 472 G-~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~- 546 (573)
T COG4987 472 G-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLD- 546 (573)
T ss_pred C-CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEE-
Confidence 4 67999999999999999999999999999999999999999999998654 899999999975 478999999998
Q ss_pred CCEEEEEcCCCC
Q 000937 846 GGRIIYSGPLGN 857 (1218)
Q Consensus 846 ~G~~~~~g~~~~ 857 (1218)
+|++++.|..++
T Consensus 547 ~Gkiie~G~~~~ 558 (573)
T COG4987 547 NGKIIEEGTHAE 558 (573)
T ss_pred CCeeeecCCHHh
Confidence 699999998754
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=334.38 Aligned_cols=222 Identities=22% Similarity=0.267 Sum_probs=178.7
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GCFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~ 691 (1218)
..++++|+++.+.. +.+.+|+|+|++|++||++||+||||||||||+++|+|..++ .+.+|+|.+
T Consensus 79 ~~i~~~nls~~y~~------------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~i 146 (329)
T PRK14257 79 NVFEIRNFNFWYMN------------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYF 146 (329)
T ss_pred ceEEEEeeEEEecC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 35899999998842 124699999999999999999999999999999999998642 134899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCC-hhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQIN-SKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
+|.++.. ...++.++|++|++.+++ .|++||+.|+.... ... .+...+.++++++.++|.+..++.++..
T Consensus 147 dG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~ 222 (329)
T PRK14257 147 LGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKA 222 (329)
T ss_pred CCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC
Confidence 9998642 234567999999988775 79999999864321 111 2222344677888888753323333332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
...||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||+++ .+.+.+|++++|.
T Consensus 223 -~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~- 298 (329)
T PRK14257 223 -GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFY- 298 (329)
T ss_pred -cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 458999999999999999999999999999999999999999999999875 699999999975 4566799999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|++.
T Consensus 299 ~G~i~e~g~~~ 309 (329)
T PRK14257 299 QGWIEEAGETK 309 (329)
T ss_pred CCEEEEeCCHH
Confidence 69999999874
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=329.78 Aligned_cols=216 Identities=21% Similarity=0.304 Sum_probs=174.8
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~ 691 (1218)
..+.++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|+.+ +. +.+|+|.+
T Consensus 38 ~~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~ 103 (286)
T PRK14275 38 PHVVAKNFSIYYG--------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMF 103 (286)
T ss_pred eEEEEeeeEEEEC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEE
Confidence 3588999999873 2359999999999999999999999999999999999743 20 24899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC----ccccccc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD----GIKESLV 762 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~ 762 (1218)
+|.++.. ...++.++|++|++.+++. ||.||+.+....+.. ......++.+.++++.+++. +..+..
T Consensus 104 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 179 (286)
T PRK14275 104 DGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN- 179 (286)
T ss_pred CCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC-
Confidence 9987532 1245679999999888874 999999986533211 11222345567788888874 223333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++
T Consensus 180 ----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~ 253 (286)
T PRK14275 180 ----ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMF 253 (286)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEE
Confidence 358999999999999999999999999999999999999999999999865 689999999985 56678999999
Q ss_pred EecCCEEEEEcCC
Q 000937 843 LKTGGRIIYSGPL 855 (1218)
Q Consensus 843 l~~~G~~~~~g~~ 855 (1218)
|. +|+++..|++
T Consensus 254 L~-~G~i~~~g~~ 265 (286)
T PRK14275 254 FY-EGVLVEHAPT 265 (286)
T ss_pred EE-CCEEEEeCCH
Confidence 98 5999999875
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=327.77 Aligned_cols=225 Identities=22% Similarity=0.345 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++.... .+...++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 l~~~nl~~~~~~~~~-----~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~ 76 (268)
T PRK10419 4 LNVSGLSHHYAHGGL-----SGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPL 76 (268)
T ss_pred EEEeceEEEecCCcc-----ccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEec
Confidence 678999988742000 0000135799999999999999999999999999999999998776 489999999875
Q ss_pred cc------ccccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000937 697 IQ------ETFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-GIKESLVGIPGV 767 (1218)
Q Consensus 697 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 767 (1218)
.. ...++.++|++|+. .+.+..|+.|++.+..... ......+..+.++++++.+++. +..+...
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 149 (268)
T PRK10419 77 AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP----- 149 (268)
T ss_pred cccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----
Confidence 32 12356799999997 3667899999987653211 1122333445688999999996 4555543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|++++|. +
T Consensus 150 ~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~ 227 (268)
T PRK10419 150 PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-N 227 (268)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-C
Confidence 479999999999999999999999999999999999999999999999865 899999999975 5667899999997 6
Q ss_pred CEEEEEcCCCC
Q 000937 847 GRIIYSGPLGN 857 (1218)
Q Consensus 847 G~~~~~g~~~~ 857 (1218)
|++++.|++++
T Consensus 228 G~i~~~g~~~~ 238 (268)
T PRK10419 228 GQIVETQPVGD 238 (268)
T ss_pred CEEeeeCChhh
Confidence 99999998754
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=329.14 Aligned_cols=217 Identities=19% Similarity=0.226 Sum_probs=175.2
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEE
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIK 690 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~ 690 (1218)
+..+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.
T Consensus 18 ~~~l~~~nl~~~~~--------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (274)
T PRK14265 18 HSVFEVEGVKVFYG--------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLL 83 (274)
T ss_pred CceEEEeeEEEEeC--------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEE
Confidence 34689999999873 246999999999999999999999999999999999986431 2489999
Q ss_pred ECCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccc
Q 000937 691 VNGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESL 761 (1218)
Q Consensus 691 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~ 761 (1218)
++|++... ...++.++|++|+..+++. ||.||+.+....+. ... ...+.+++.++.+++.. ..+..
T Consensus 84 ~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (274)
T PRK14265 84 YRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDKLKEK 158 (274)
T ss_pred ECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHHhcCC
Confidence 99987532 2345679999999888764 99999987643221 111 12344566777777642 22332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEE
Q 000937 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELI 841 (1218)
Q Consensus 762 ~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~ 841 (1218)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|+++
T Consensus 159 -----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~ 231 (274)
T PRK14265 159 -----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTA 231 (274)
T ss_pred -----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEE
Confidence 358999999999999999999999999999999999999999999999965 799999999985 6778899999
Q ss_pred EEe--------cCCEEEEEcCCC
Q 000937 842 LLK--------TGGRIIYSGPLG 856 (1218)
Q Consensus 842 ~l~--------~~G~~~~~g~~~ 856 (1218)
+|. ++|++++.|+++
T Consensus 232 ~l~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 232 FFNTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred EEecccccccccCceEEEeCCHH
Confidence 996 269999999863
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=325.03 Aligned_cols=221 Identities=22% Similarity=0.268 Sum_probs=178.2
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEE
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIK 690 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~ 690 (1218)
++.+..+++++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +.+|+|.
T Consensus 6 ~~~~~~~~~~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~ 71 (261)
T PRK14263 6 PIVMDCKLDKIFYG--------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVH 71 (261)
T ss_pred CceEEEEeEEEEeC--------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEE
Confidence 35577888877662 357999999999999999999999999999999999987641 2489999
Q ss_pred ECCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 691 VNGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 691 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
++|+++.. ...++.++|++|++.++ .+|+.||+.++...+. . .....+.++++++.+++.+..+...+ .
T Consensus 72 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~ 145 (261)
T PRK14263 72 FLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-V 145 (261)
T ss_pred ECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-C
Confidence 99987532 13456799999998877 5999999988754321 1 12234567888999988543222221 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe-
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK- 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~- 844 (1218)
..+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +++|+|+++|+++ ++.+.+|++++|.
T Consensus 146 ~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~ 223 (261)
T PRK14263 146 SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSV 223 (261)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEec
Confidence 246899999999999999999999999999999999999999999999996 4799999999985 5678899999996
Q ss_pred ------cCCEEEEEcCCC
Q 000937 845 ------TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ------~~G~~~~~g~~~ 856 (1218)
++|+++..|+.+
T Consensus 224 ~~~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 224 DISQGTRTGYLVEMGPTA 241 (261)
T ss_pred ccccccCCceEEEeCCHH
Confidence 369999999853
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=325.09 Aligned_cols=215 Identities=21% Similarity=0.303 Sum_probs=174.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--C-ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS--G-CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~--~-~~~G~i~~~ 692 (1218)
.+.++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|..++ . +.+|+|.++
T Consensus 4 ~l~~~~l~~~~~--------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~ 69 (251)
T PRK14251 4 IISAKDVHLSYG--------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFE 69 (251)
T ss_pred eEEEEeeEEEEC--------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEEC
Confidence 478999999873 24699999999999999999999999999999999998752 1 248999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|++... ...++.++|++|++.+++ .||+||+.+...... ....+...+.++++++.+++.. ..+..
T Consensus 70 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 144 (251)
T PRK14251 70 GQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN-- 144 (251)
T ss_pred CEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC--
Confidence 987532 123567999999988776 799999987643221 1112223355778888888842 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|
T Consensus 145 ---~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l 219 (251)
T PRK14251 145 ---AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFL 219 (251)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEE
Confidence 358999999999999999999999999999999999999999999999854 799999999975 567789999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|+++..|+.
T Consensus 220 ~-~G~i~~~~~~ 230 (251)
T PRK14251 220 M-NGDLIEAGPT 230 (251)
T ss_pred E-CCEEEEeCCH
Confidence 7 5999998875
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=328.22 Aligned_cols=209 Identities=24% Similarity=0.426 Sum_probs=163.3
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (237)
T cd03252 2 TFEHVRFRYKP------------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLA 67 (237)
T ss_pred EEEEEEEecCC------------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehH
Confidence 57888887631 124699999999999999999999999999999999999876 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHH-----HHHHHHHHc--CCCccccccccCCCC
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKAD-----CVNHVLKTI--ELDGIKESLVGIPGV 767 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~ 767 (1218)
. ...++.++|++|++.+++ .||.||+.+... ........+ ...+.++.+ ++....+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----G 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----C
Confidence 2 234567999999987764 799999976421 111111111 112233333 333323332 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.+|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ + .+.+|++++|. +|
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~-~~~~d~v~~l~-~G 212 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-T-VKNADRIIVME-KG 212 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-H-HHhCCEEEEEE-CC
Confidence 58999999999999999999999999999999999999999999999964 899999999985 3 46799999998 59
Q ss_pred EEEEEcCC
Q 000937 848 RIIYSGPL 855 (1218)
Q Consensus 848 ~~~~~g~~ 855 (1218)
++++.|++
T Consensus 213 ~i~~~~~~ 220 (237)
T cd03252 213 RIVEQGSH 220 (237)
T ss_pred EEEEEcCH
Confidence 99999875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=323.23 Aligned_cols=219 Identities=21% Similarity=0.321 Sum_probs=175.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCFKGEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~--~~~~~~G~i~~~g 693 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~--~~G~i~~~g 70 (252)
T CHL00131 7 ILEIKNLHASVN--------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI--LEGDILFKG 70 (252)
T ss_pred eEEEEeEEEEeC--------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC--CCceEEECC
Confidence 478999998873 236999999999999999999999999999999999973 33 589999999
Q ss_pred EeCccc---cccc-eEEEeccCCCCCCCCCHHHHHHHHHhhccC----CCCChhhHHHHHHHHHHHcCCC-ccccccccC
Q 000937 694 YPKIQE---TFVR-VSGYCEQTDIHSPHITIEESLFFSAWLRLA----PQINSKTKADCVNHVLKTIELD-GIKESLVGI 764 (1218)
Q Consensus 694 ~~~~~~---~~~~-~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~ 764 (1218)
.+.... ..++ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+++. +..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 149 (252)
T CHL00131 71 ESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN- 149 (252)
T ss_pred EEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc-
Confidence 875431 2222 478999999999999999999875432110 0111112235677888999986 34454432
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh-hceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFES-FDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l 843 (1218)
.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|
T Consensus 150 ---~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l 225 (252)
T CHL00131 150 ---EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVM 225 (252)
T ss_pred ---cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEE
Confidence 259999999999999999999999999999999999999999999999877999999999975 34344 7999999
Q ss_pred ecCCEEEEEcCCC
Q 000937 844 KTGGRIIYSGPLG 856 (1218)
Q Consensus 844 ~~~G~~~~~g~~~ 856 (1218)
. +|++++.|+++
T Consensus 226 ~-~G~i~~~~~~~ 237 (252)
T CHL00131 226 Q-NGKIIKTGDAE 237 (252)
T ss_pred e-CCEEEEecChh
Confidence 7 69999999864
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=371.55 Aligned_cols=211 Identities=26% Similarity=0.422 Sum_probs=175.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.+. +++++|+|+|++++|||.+||+||||||||||+++|+|.. | .+|+|.+||.
T Consensus 348 ~~i~~~~vsf~~~-------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~ 411 (588)
T PRK11174 348 VTIEAEDLEILSP-------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGI 411 (588)
T ss_pred ceEEEEeeEEecc-------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCE
Confidence 3589999997653 1246999999999999999999999999999999999988 6 3899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCC-------CccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-------DGIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~ 764 (1218)
++.+ ..+++.++||+|++.+++ -|++||+.++. ++.+. +.++++++..++ .+-.|+.+|.
T Consensus 412 ~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge 481 (588)
T PRK11174 412 ELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGD 481 (588)
T ss_pred ecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhccccccccccc
Confidence 8643 456788999999998876 59999998752 12222 234444554443 3345788887
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|++ +..+.+|++++++
T Consensus 482 ~G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl--~~i~~aD~Iivl~ 557 (588)
T PRK11174 482 QA-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQL--EDLAQWDQIWVMQ 557 (588)
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecCh--HHHHhCCEEEEEe
Confidence 64 4699999999999999999999999999999999999999999999885 589999999997 4578899999997
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 558 -~G~i~e~G~~~ 568 (588)
T PRK11174 558 -DGQIVQQGDYA 568 (588)
T ss_pred -CCeEeecCCHH
Confidence 69999999853
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=323.99 Aligned_cols=215 Identities=22% Similarity=0.294 Sum_probs=173.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~ 692 (1218)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +. +.+|+|.++
T Consensus 5 ~l~~~~l~~~~~--------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 70 (252)
T PRK14255 5 IITSSDVHLFYG--------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLR 70 (252)
T ss_pred eEEEEeEEEEEC--------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEc
Confidence 478999999873 2469999999999999999999999999999999999754 21 148999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 763 (1218)
|.+... ...++.++|++|++.+++ .|+.||+.+....+.. ...+...+.+.+.++.+++.. ..+..
T Consensus 71 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~-- 145 (252)
T PRK14255 71 GQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES-- 145 (252)
T ss_pred CEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC--
Confidence 987531 133567999999988887 7999999886543211 112222345566777777642 22222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|
T Consensus 146 ---~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l 220 (252)
T PRK14255 146 ---ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFF 220 (252)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999976 589999999985 566789999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|+++..|++
T Consensus 221 ~-~G~i~~~~~~ 231 (252)
T PRK14255 221 L-TGNLIEFADT 231 (252)
T ss_pred E-CCEEEEeCCH
Confidence 7 6999998875
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=326.79 Aligned_cols=215 Identities=21% Similarity=0.236 Sum_probs=172.6
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--S-GCFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~-~~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++
T Consensus 24 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 89 (271)
T PRK14238 24 VFDTQNLNLWYG--------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYR 89 (271)
T ss_pred EEEEeeeEEEEC--------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEEC
Confidence 589999999874 2368999999999999999999999999999999999865 1 1258999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC----cccccccc
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD----GIKESLVG 763 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~ 763 (1218)
|.+... ...++.++|++|++.+++ .||+||+.++..... ........+.+.+.++.+++. +..+..
T Consensus 90 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-- 164 (271)
T PRK14238 90 DQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN-- 164 (271)
T ss_pred CEEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC--
Confidence 987531 123567999999988877 599999988653221 111122234456667766542 222322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|
T Consensus 165 ---~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l 239 (271)
T PRK14238 165 ---AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFF 239 (271)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 358999999999999999999999999999999999999999999999876 799999999975 566789999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|+++..|+.
T Consensus 240 ~-~G~i~~~g~~ 250 (271)
T PRK14238 240 L-NGYVNEYDDT 250 (271)
T ss_pred E-CCEEEEeCCH
Confidence 7 5999999875
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=312.56 Aligned_cols=179 Identities=23% Similarity=0.341 Sum_probs=150.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-----ccccceEEEeccCCC-CC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-----ETFVRVSGYCEQTDI-HS 715 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~ 715 (1218)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++... ...++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 35699999999999999999999999999999999998876 48999999987531 123467899999873 33
Q ss_pred CCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000937 716 PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDE 795 (1218)
Q Consensus 716 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDE 795 (1218)
...||+||+.+..... .....+..+.++++++.+++.+..++.+ .+||||||||++|||+|+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999998865322 1223334456788999999987777654 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Q 000937 796 PTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830 (1218)
Q Consensus 796 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 830 (1218)
||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999878999999999874
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=356.87 Aligned_cols=217 Identities=26% Similarity=0.370 Sum_probs=181.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++
T Consensus 4 ~l~~~~l~~~~~--------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~ 67 (501)
T PRK11288 4 YLSFDGIGKTFP--------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQE 67 (501)
T ss_pred eEEEeeeEEEEC--------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 478999998873 24699999999999999999999999999999999998876 48999999987
Q ss_pred Ccc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+.. ..+++.++|++|++.+++.+||.||+.++............+..++++++++.+++.+..+..+ .+||
T Consensus 68 i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (501)
T PRK11288 68 MRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLS 142 (501)
T ss_pred CCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCC
Confidence 532 1235679999999989999999999988532111011122334456888999999986666554 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|. +|+++.
T Consensus 143 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~-~G~i~~ 220 (501)
T PRK11288 143 IGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFK-DGRYVA 220 (501)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEe
Confidence 99999999999999999999999999999999999999999999878999999999985 5667899999998 589987
Q ss_pred EcCC
Q 000937 852 SGPL 855 (1218)
Q Consensus 852 ~g~~ 855 (1218)
.++.
T Consensus 221 ~~~~ 224 (501)
T PRK11288 221 TFDD 224 (501)
T ss_pred ecCc
Confidence 7654
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=306.42 Aligned_cols=169 Identities=30% Similarity=0.470 Sum_probs=149.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (173)
T cd03230 2 EVRNLSKRYG--------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIK 65 (173)
T ss_pred EEEEEEEEEC--------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcc
Confidence 5788888763 13699999999999999999999999999999999998776 4899999998754
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 698 Q--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 698 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
. ...++.++|++|++.+++.+|+.||+. ||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~ 101 (173)
T cd03230 66 KEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMK 101 (173)
T ss_pred cchHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHH
Confidence 2 234567999999998888899999863 899999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|+++++. +|+
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~-~g~ 172 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILN-NGR 172 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEe-CCC
Confidence 9999999999999999999999999999999999999999877999999999975 5666899999997 465
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=314.88 Aligned_cols=196 Identities=26% Similarity=0.326 Sum_probs=164.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 3 l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 66 (207)
T PRK13539 3 LEGEDLACVRG--------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDI 66 (207)
T ss_pred EEEEeEEEEEC--------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeC
Confidence 67899998773 24699999999999999999999999999999999998776 489999999875
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.....++.++|++|++.+++.+||+||+.+...... . ..+.++++++.+|+.+..+... +.|||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (207)
T PRK13539 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLPF-----GYLSAGQKR 134 (207)
T ss_pred cchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHH
Confidence 322245678999999888889999999987543221 1 1234788999999987666554 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ + ... |+++.+
T Consensus 135 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~-~~~-~~~~~~ 198 (207)
T PRK13539 135 RVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-G-LPG-ARELDL 198 (207)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-h-hcc-CcEEee
Confidence 999999999999999999999999999999999999998878999999999975 3 344 777666
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=357.90 Aligned_cols=207 Identities=24% Similarity=0.363 Sum_probs=174.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc----ccccceEEEeccCCCCCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ----ETFVRVSGYCEQTDIHSPHI 718 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~l 718 (1218)
+++|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|++... ...++.++|++|+..+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 46999999999999999999999999999999999988764 8999999987542 12345699999998888999
Q ss_pred CHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
||+||+.++............+..++++++++.+++.+..++.+ .+|||||||||+||++|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532110100122333456888999999987776664 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCCC
Q 000937 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGNH 858 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~~ 858 (1218)
|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|+++..|++.+.
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~~~ 221 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILR-DGQWIATQPLAGL 221 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEeecChhhC
Confidence 99999999999999999888999999999975 5667899999998 5999999987653
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=319.81 Aligned_cols=209 Identities=24% Similarity=0.422 Sum_probs=168.2
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 3 l~~~~l~~~~~~------------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 68 (220)
T cd03245 3 IEFRNVSFSYPN------------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDI 68 (220)
T ss_pred EEEEEEEEEcCC------------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEh
Confidence 678898887631 124699999999999999999999999999999999998776 489999999875
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcccccccc------CCCC
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG------IPGV 767 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~ 767 (1218)
.. ...++.++|++|++.+++ .||.||+.+... .. ..+.++++++.+++.+..+.... ...+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~----~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LA----DDERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CC----CHHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 223457999999988776 699999876321 11 12345567788888765554321 0123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ..+.+|+++++. +|
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~-~g 214 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMD-SG 214 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEe-CC
Confidence 589999999999999999999999999999999999999999999998764 89999999975 357899999997 58
Q ss_pred EEEEEc
Q 000937 848 RIIYSG 853 (1218)
Q Consensus 848 ~~~~~g 853 (1218)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 887654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=321.78 Aligned_cols=220 Identities=19% Similarity=0.267 Sum_probs=176.3
Q ss_pred eEEEEEeEEEEEecCc----hhhh--hccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeE
Q 000937 615 ITMVFQDLQYSIDTPL----EMRR--RECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGE 688 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~----~~~~--~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~ 688 (1218)
+.+..+|++..++... ..+. ........+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~--~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT--VGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ceE
Confidence 5678888888776421 1110 0011334567999999999999999999999999999999999998764 899
Q ss_pred EEECCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCC
Q 000937 689 IKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 689 i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 768 (1218)
|.++|. +++++|...+.+.+|+.||+.+..... ....++..+.++++++.+++.+..+..+ +
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----K 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----c
Confidence 999985 245666666778899999998764332 1223333455677888888877666553 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|. +|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCE
Confidence 79999999999999999999999999999999999999999999999877999999999975 5667899999997 699
Q ss_pred EEEEcCCC
Q 000937 849 IIYSGPLG 856 (1218)
Q Consensus 849 ~~~~g~~~ 856 (1218)
++..|+.+
T Consensus 221 i~~~g~~~ 228 (264)
T PRK13546 221 LKDYGELD 228 (264)
T ss_pred EEEeCCHH
Confidence 99998764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=324.00 Aligned_cols=215 Identities=24% Similarity=0.303 Sum_probs=173.6
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~ 66 (253)
T TIGR02323 3 LLQVSGLSKSYG--------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRS 66 (253)
T ss_pred eEEEeeeEEEeC--------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEeccc
Confidence 378899998873 23689999999999999999999999999999999999876 48999999976
Q ss_pred -----Ccc---c----cccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccc
Q 000937 696 -----KIQ---E----TFVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKES 760 (1218)
Q Consensus 696 -----~~~---~----~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~ 760 (1218)
... . ..++.++|++|++. +.+.+|+.||+.+..... .. .......+.++++++.+++.+ ..++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~ 144 (253)
T TIGR02323 67 GAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDD 144 (253)
T ss_pred ccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhc
Confidence 321 1 11346899999874 456689999987643211 10 011123456788999999963 5555
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhce
Q 000937 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 761 ~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
. ++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ ++.+.+|+
T Consensus 145 ~-----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~ 218 (253)
T TIGR02323 145 L-----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQR 218 (253)
T ss_pred C-----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 4 3579999999999999999999999999999999999999999999998764 899999999975 56668999
Q ss_pred EEEEecCCEEEEEcCC
Q 000937 840 LILLKTGGRIIYSGPL 855 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~ 855 (1218)
+++|. +|+++..|++
T Consensus 219 ~~~l~-~G~i~~~~~~ 233 (253)
T TIGR02323 219 LLVMQ-QGRVVESGLT 233 (253)
T ss_pred EEEEE-CCEEEEECCH
Confidence 99997 5999998875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=326.02 Aligned_cols=218 Identities=19% Similarity=0.229 Sum_probs=173.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.+.++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.++
T Consensus 10 ~l~i~~v~~~~~--------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 75 (264)
T PRK14243 10 VLRTENLNVYYG--------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFH 75 (264)
T ss_pred EEEEeeeEEEEC--------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEEC
Confidence 478999998873 236999999999999999999999999999999999975421 248999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|+++.. ...++.++|++|++.+++ .|+.||+.+....+. .. ....+.++++++.+++.+..+.... ..+
T Consensus 76 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~ 149 (264)
T PRK14243 76 GKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSG 149 (264)
T ss_pred CEEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCc
Confidence 987531 233567999999988877 599999988653221 11 1233456667777777421111111 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe---
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK--- 844 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~--- 844 (1218)
.+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.
T Consensus 150 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~ 227 (264)
T PRK14243 150 LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVEL 227 (264)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccc
Confidence 57999999999999999999999999999999999999999999999976 589999999985 6788899999997
Q ss_pred -----cCCEEEEEcCC
Q 000937 845 -----TGGRIIYSGPL 855 (1218)
Q Consensus 845 -----~~G~~~~~g~~ 855 (1218)
++|+++..|++
T Consensus 228 ~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 228 TEGGGRYGYLVEFDRT 243 (264)
T ss_pred ccccccCceEEEeCCH
Confidence 25899999875
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=281.22 Aligned_cols=216 Identities=25% Similarity=0.370 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+..+++++.+. ..++|.||+++.+.||.+.++||||||||||++.|.=+..|. +|+..+.|..
T Consensus 2 sirv~~in~~yg--------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~--sg~l~ia~~~ 65 (242)
T COG4161 2 SIQLNGINCFYG--------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNH 65 (242)
T ss_pred ceEEcccccccc--------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC--CCeEEecccc
Confidence 356778887773 457999999999999999999999999999999998766653 8999987754
Q ss_pred C--c----c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCC
Q 000937 696 K--I----Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 696 ~--~----~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 766 (1218)
. + + ...++.+|.|+|+-.++|++||.||+.-+.. +. ...++++.+.++.++++.+.|.+.+|+..
T Consensus 66 fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p---- 139 (242)
T COG4161 66 FDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADRYP---- 139 (242)
T ss_pred cccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhccccccccCc----
Confidence 2 1 1 2356789999999999999999999975432 21 13456667778899999999999988763
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
-.|||||+|||+|||||+.+|++|++||||++|||+-..++++++++++..|.|-+++||..+. .-..+.+++.|. +
T Consensus 140 -lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme-~ 216 (242)
T COG4161 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYME-N 216 (242)
T ss_pred -eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeee-c
Confidence 3699999999999999999999999999999999999999999999999999999999997642 234567888887 6
Q ss_pred CEEEEEcCCC
Q 000937 847 GRIIYSGPLG 856 (1218)
Q Consensus 847 G~~~~~g~~~ 856 (1218)
|++++.|+.+
T Consensus 217 g~ive~g~a~ 226 (242)
T COG4161 217 GHIVEQGDAS 226 (242)
T ss_pred CeeEeecchh
Confidence 9999999864
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=311.62 Aligned_cols=185 Identities=26% Similarity=0.351 Sum_probs=157.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (198)
T TIGR01189 2 AARNLACSRG--------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALA 65 (198)
T ss_pred EEEEEEEEEC--------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcc
Confidence 5678887763 24699999999999999999999999999999999998876 4899999998753
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 698 Q--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 698 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
. ..+++.++|++|++.+++.+|+.||+.+....+. . + .+.++++++.+++.+..++.+ .+||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (198)
T TIGR01189 66 EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQ 133 (198)
T ss_pred cchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHH
Confidence 2 2234678999999888888999999987643321 1 1 235678899999987766654 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 830 (1218)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 134 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 134 RRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 9999999999999999999999999999999999999999878999999999874
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=338.43 Aligned_cols=225 Identities=22% Similarity=0.315 Sum_probs=187.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG--CFKGEIKVNG 693 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~--~~~G~i~~~g 693 (1218)
-++++||+..+... .+...+++||||++++||++||+|.|||||||+.++|.|+.+++ ..+|+|.++|
T Consensus 5 lL~V~nL~v~~~~~----------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g 74 (539)
T COG1123 5 LLEVENLTVEFATD----------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG 74 (539)
T ss_pred eEEEeceEEEEecC----------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECC
Confidence 57899999988643 12357999999999999999999999999999999999987754 2579999999
Q ss_pred EeCcc---c----cccceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccC
Q 000937 694 YPKIQ---E----TFVRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 694 ~~~~~---~----~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 764 (1218)
.++.. . ...+.++|++|++ .+.|-+|+.+.+.-....+.. ...++..+++.++++..+|.+-... +
T Consensus 75 ~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~ 149 (539)
T COG1123 75 RDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---D 149 (539)
T ss_pred cchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---c
Confidence 86421 1 1336799999996 466889999888766555432 2366677788899999999876554 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
..+++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.++ |.++|++|||+. -+.+.+|++++|
T Consensus 150 ~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm 228 (539)
T COG1123 150 RYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVM 228 (539)
T ss_pred cCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEE
Confidence 224699999999999999999999999999999999999999999999999754 999999999986 467889999999
Q ss_pred ecCCEEEEEcCCCC
Q 000937 844 KTGGRIIYSGPLGN 857 (1218)
Q Consensus 844 ~~~G~~~~~g~~~~ 857 (1218)
. +|++++.|+.++
T Consensus 229 ~-~G~iVE~G~~~~ 241 (539)
T COG1123 229 Y-KGEIVETGPTEE 241 (539)
T ss_pred E-CCEEEEecCHHH
Confidence 8 599999999753
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=322.42 Aligned_cols=215 Identities=24% Similarity=0.306 Sum_probs=174.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeE------E
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGE------I 689 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~------i 689 (1218)
.+.++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +|+ +
T Consensus 10 ~i~~~~~~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~--~G~v~~~G~~ 73 (257)
T PRK14246 10 VFNISRLYLYIN--------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY--DSKIKVDGKV 73 (257)
T ss_pred heeeeeEEEecC--------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--cCceeEcCEE
Confidence 378999998873 346999999999999999999999999999999999987763 544 4
Q ss_pred EECCEeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----cccccc
Q 000937 690 KVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKESLV 762 (1218)
Q Consensus 690 ~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 762 (1218)
.++|.+... ...++.++|++|++.+++.+|++||+.+...... ....++..+.++++++.+++.+ ..+..
T Consensus 74 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 150 (257)
T PRK14246 74 LYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP- 150 (257)
T ss_pred EECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC-
Confidence 454554321 2245679999999999999999999988743221 1122334456788899999863 22332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Q 000937 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 763 ~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++
T Consensus 151 ----~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~ 224 (257)
T PRK14246 151 ----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAF 224 (257)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEE
Confidence 357999999999999999999999999999999999999999999999865 699999999975 45678999999
Q ss_pred EecCCEEEEEcCCC
Q 000937 843 LKTGGRIIYSGPLG 856 (1218)
Q Consensus 843 l~~~G~~~~~g~~~ 856 (1218)
|. +|+++..|+.+
T Consensus 225 l~-~g~i~~~g~~~ 237 (257)
T PRK14246 225 LY-NGELVEWGSSN 237 (257)
T ss_pred EE-CCEEEEECCHH
Confidence 97 58999998763
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=322.20 Aligned_cols=198 Identities=24% Similarity=0.374 Sum_probs=168.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCCCHH
Q 000937 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIE 721 (1218)
Q Consensus 645 iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 721 (1218)
+|+|+|+++++||+++|+||||||||||+++|+|+.++ +|+|.++|++... ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 79999999999999999999999999999999998743 7999999987542 22345689999998888889999
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 000937 722 ESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVA-------NPSIIFMD 794 (1218)
Q Consensus 722 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~-------~p~llllD 794 (1218)
||+.+.... ........++++++++.+++.+..++.+ +.||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1122233456788999999987666654 4799999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 795 EPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 795 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++..|+.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLK-QGKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999877999999999975 5778899999997 59999998764
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=312.22 Aligned_cols=194 Identities=21% Similarity=0.304 Sum_probs=163.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
+.++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++.
T Consensus 2 l~~~~l~~~~~--------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~ 65 (200)
T PRK13540 2 LDVIELDFDYH--------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSI 65 (200)
T ss_pred EEEEEEEEEeC--------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCcc
Confidence 57889988773 24699999999999999999999999999999999999876 489999999875
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.++|++|+..+++.+||+||+.+.... . . ....++++++.+++.+..+..+ .+|||||
T Consensus 66 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 132 (200)
T PRK13540 66 KKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S----P--GAVGITELCRLFSLEHLIDYPC-----GLLSSGQ 132 (200)
T ss_pred ccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C----c--chHHHHHHHHHcCCchhhhCCh-----hhcCHHH
Confidence 42 23456799999998888899999999876421 1 1 1235788899999876666554 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEE
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELI 841 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~ 841 (1218)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ....+|..+
T Consensus 133 ~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 133 KRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 99999999999999999999999999999999999999998777999999999974 456676544
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=317.53 Aligned_cols=191 Identities=25% Similarity=0.379 Sum_probs=158.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHH
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIE 721 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 721 (1218)
.+++|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|++... ..+...+.+.+||+
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~~~~tv~ 102 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFNPELTGR 102 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCCCCCcHH
Confidence 35799999999999999999999999999999999998876 48999999986421 11123345779999
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000937 722 ESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLD 801 (1218)
Q Consensus 722 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD 801 (1218)
||+.+...... .......+.++++++.+++.+..++.+ .+||||||||++|||+|+.+|++++|||||+|||
T Consensus 103 enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gLD 174 (224)
T cd03220 103 ENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 (224)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99988654321 122334456788899999987777664 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 802 ARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 802 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++. +|+++..|
T Consensus 175 ~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 224 (224)
T cd03220 175 AAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLE-KGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 99999999999999877899999999975 5667899999997 68988754
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=311.05 Aligned_cols=191 Identities=27% Similarity=0.471 Sum_probs=168.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-------ccccceEEEeccCCCCCCCCCH
Q 000937 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-------ETFVRVSGYCEQTDIHSPHITI 720 (1218)
Q Consensus 648 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 720 (1218)
++++..+.-.++||.|+||||||||+|+|+|+..|+ +|.|.+||....+ ...+|.+|||+|+-.+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 567777665799999999999999999999998885 8999999975321 2346889999999999999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000937 721 EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGL 800 (1218)
Q Consensus 721 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgL 800 (1218)
+.||.|+.... .....+++.+.||+.|+.++.. ..|||||||||+|+|||+++|++|+||||.+.|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999975321 2345788999999999998874 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 801 DARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 801 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
|-..+.+++..|++++++ ...|+.+||.++ |+..++|++++|. +|++..+|+.+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le-~GkV~A~g~~e 214 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLE-NGKVKASGPLE 214 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEec-CCeEEecCcHH
Confidence 999999999999999987 889999999885 8999999999998 69999999864
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=372.83 Aligned_cols=209 Identities=27% Similarity=0.382 Sum_probs=176.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|+++. .++.+|+|+|++++|||.+||+||||||||||+|+|+|+.+|. +|+|.+||++
T Consensus 451 ~I~~~nvsf~Y~~------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~ 516 (686)
T TIGR03797 451 AIEVDRVTFRYRP------------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQD 516 (686)
T ss_pred eEEEEEEEEEcCC------------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEE
Confidence 6899999999852 1346999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 765 (1218)
+.+ ..+++.++||+|++.+++ -|++||+.++. + .+ ++.+.++++..++.+ -.|+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 643 456788999999998876 59999998741 1 11 233556666666543 346777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ ++|+|+++|++ +..+.+|++++|+
T Consensus 586 G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~--~~i~~~D~Iivl~- 658 (686)
T TIGR03797 586 G-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRL--STIRNADRIYVLD- 658 (686)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecCh--HHHHcCCEEEEEE-
Confidence 4 579999999999999999999999999999999999999999999886 58999999987 4578899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 659 ~G~iv~~G~~~ 669 (686)
T TIGR03797 659 AGRVVQQGTYD 669 (686)
T ss_pred CCEEEEECCHH
Confidence 59999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=323.65 Aligned_cols=209 Identities=23% Similarity=0.364 Sum_probs=164.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. .++.+++|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (234)
T cd03251 2 EFKNVTFRYPG------------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVR 67 (234)
T ss_pred EEEEEEEEeCC------------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhh
Confidence 57888887731 123689999999999999999999999999999999999876 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHH-----HHHHHHHHc--CCCccccccccCCCC
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKAD-----CVNHVLKTI--ELDGIKESLVGIPGV 767 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~ 767 (1218)
. ...++.++|++|++.+++ .||+||+.+.... .......+ .+++.++.+ ++.+..+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~ 136 (234)
T cd03251 68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----G 136 (234)
T ss_pred hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----C
Confidence 2 233567999999988776 6999999764321 11111111 123444444 444433333 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++ +.+|++++|. +|
T Consensus 137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~-~G 212 (234)
T cd03251 137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLE-DG 212 (234)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEec-CC
Confidence 58999999999999999999999999999999999999999999999864 899999999985 44 5599999997 58
Q ss_pred EEEEEcCC
Q 000937 848 RIIYSGPL 855 (1218)
Q Consensus 848 ~~~~~g~~ 855 (1218)
+++..|++
T Consensus 213 ~i~~~~~~ 220 (234)
T cd03251 213 KIVERGTH 220 (234)
T ss_pred eEeeeCCH
Confidence 99988875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=325.28 Aligned_cols=252 Identities=21% Similarity=0.339 Sum_probs=205.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+++++++..++ ...+++|||+++++||+.||+|.||||||||+++|.|.++|+ +|+|.++|++
T Consensus 4 ~l~~~~itK~f~--------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~--~GeI~v~G~~ 67 (501)
T COG3845 4 ALEMRGITKRFP--------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD--SGEIRVDGKE 67 (501)
T ss_pred eEEEeccEEEcC--------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC--cceEEECCEE
Confidence 478899988874 357999999999999999999999999999999999999985 9999999998
Q ss_pred Ccc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
..- ...+..||.|.|+..+.|++||.||+..+..-............++++++.+.+||.--.|.+++ +||
T Consensus 68 v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLs 142 (501)
T COG3845 68 VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLS 142 (501)
T ss_pred eccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCC
Confidence 532 23455699999999999999999999987543222223455667789999999999877777765 799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
-||||||.|-++|.++|++|+|||||+-|-|....++++.|++++++|+|||++||... |+.+.+|++.+|. .|+++.
T Consensus 143 VG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR-~Gkvvg 220 (501)
T COG3845 143 VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLR-RGKVVG 220 (501)
T ss_pred cchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEe-CCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999986 8999999999998 589887
Q ss_pred EcC-CCC-CchhhhhhhhcCC-CCCCCCCCCCCCcceeeecc
Q 000937 852 SGP-LGN-HSSRVIEYFEGIP-GVPQIRNNYNPATWMLEVTS 890 (1218)
Q Consensus 852 ~g~-~~~-~~~~~~~~f~~~~-~~~~~~~~~npad~~l~~~~ 890 (1218)
.-+ ..+ ..+++.+.+-+-. ..+.-.....|.+.++++-+
T Consensus 221 t~~~~~~~t~~ela~lMvG~~v~~~~~~~~~~pg~~vL~V~~ 262 (501)
T COG3845 221 TVDPVAETTEEELAELMVGREVVLRVVKPPSTPGEVVLEVED 262 (501)
T ss_pred eecCCCCCCHHHHHHHhcCCccccccccCCCCCCCeEEEEee
Confidence 766 323 2233444433210 11111244567788887754
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=364.94 Aligned_cols=214 Identities=21% Similarity=0.336 Sum_probs=178.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++|.++. +++.+|+|+|+++++||.+||+||||||||||+++|+|+.+|. +|+|.+||.
T Consensus 340 ~~i~~~~vsf~y~~------------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g~ 405 (582)
T PRK11176 340 GDIEFRNVTFTYPG------------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID--EGEILLDGH 405 (582)
T ss_pred CeEEEEEEEEecCC------------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC--CceEEECCE
Confidence 35899999999852 1346999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 764 (1218)
+... ..+++.++|++|++.+++ -|++||+.++. +...+ ++.++++++..++. +-.|+.+|.
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~ 476 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGE 476 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCC
Confidence 8643 356788999999998886 69999997641 11112 23455556655543 345777876
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||++ +..+.+|++++++
T Consensus 477 ~g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~--~~~~~~D~Ii~l~ 552 (582)
T PRK11176 477 NG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRL--STIEKADEILVVE 552 (582)
T ss_pred CC-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEE
Confidence 54 5799999999999999999999999999999999999999999999874 479999999997 4578899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 553 -~g~i~e~g~~~ 563 (582)
T PRK11176 553 -DGEIVERGTHA 563 (582)
T ss_pred -CCEEEEeCCHH
Confidence 59999999864
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=321.01 Aligned_cols=218 Identities=24% Similarity=0.312 Sum_probs=170.7
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECCE
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCFKGEIKVNGY 694 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~--~~~~~~G~i~~~g~ 694 (1218)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|.
T Consensus 2 i~~~nl~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~G~i~~~g~ 65 (248)
T PRK09580 2 LSIKDLHVSVE--------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV--TGGTVEFKGK 65 (248)
T ss_pred eEEEEEEEEeC--------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC--CceEEEECCC
Confidence 57889988773 246999999999999999999999999999999999984 34 5899999998
Q ss_pred eCccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHh-hccCCC---CChhhHHHHHHHHHHHcCCC-ccccccccCC
Q 000937 695 PKIQE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAW-LRLAPQ---INSKTKADCVNHVLKTIELD-GIKESLVGIP 765 (1218)
Q Consensus 695 ~~~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~~~---~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~ 765 (1218)
+.... . .++.++|++|++.+++.+|+.+++.+... ++.... .......+.++++++.+++. +..+..+.
T Consensus 66 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (248)
T PRK09580 66 DLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN-- 143 (248)
T ss_pred ccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC--
Confidence 75321 1 22468999999988888887777654321 110000 11112245677888888885 34444321
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh-hceEEEEe
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFES-FDELILLK 844 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~ 844 (1218)
++|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|+++++.
T Consensus 144 --~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~ 220 (248)
T PRK09580 144 --VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY 220 (248)
T ss_pred --CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE
Confidence 369999999999999999999999999999999999999999999999877999999999975 33344 79988887
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 221 -~g~i~~~g~~~ 231 (248)
T PRK09580 221 -QGRIVKSGDFT 231 (248)
T ss_pred -CCeEEEeCCHH
Confidence 69999999863
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=321.26 Aligned_cols=217 Identities=23% Similarity=0.251 Sum_probs=174.9
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEE
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIK 690 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~ 690 (1218)
+..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.
T Consensus 14 ~~~l~~~~l~~~~~--------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~ 79 (265)
T PRK14252 14 QQKSEVNKLNFYYG--------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEII 79 (265)
T ss_pred CceEEEEEEEEEEC--------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEE
Confidence 34588999999874 246999999999999999999999999999999999987642 1589999
Q ss_pred ECCEeCc---c----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc----ccc
Q 000937 691 VNGYPKI---Q----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG----IKE 759 (1218)
Q Consensus 691 ~~g~~~~---~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~ 759 (1218)
++|.+.. . ...++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+ ..+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 80 LHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred EcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 9997642 1 1235679999999888875 99999987643221 0111222345677778777642 222
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Q 000937 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 760 ~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
.. +..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+
T Consensus 157 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~ 229 (265)
T PRK14252 157 DL-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDY 229 (265)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCE
Confidence 32 357999999999999999999999999999999999999999999999975 699999999975 56678999
Q ss_pred EEEEecCCEEEEEcCC
Q 000937 840 LILLKTGGRIIYSGPL 855 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~ 855 (1218)
+++|. +|+++..|+.
T Consensus 230 i~~l~-~G~i~~~g~~ 244 (265)
T PRK14252 230 TAYMY-MGELIEFGAT 244 (265)
T ss_pred EEEEE-CCEEEEeCCH
Confidence 99997 6999999875
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=319.80 Aligned_cols=220 Identities=23% Similarity=0.320 Sum_probs=175.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~ 692 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +. +.+|+|.+|
T Consensus 3 ~l~~~~v~~~~~--------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 68 (250)
T PRK14266 3 RIEVENLNTYFD--------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLD 68 (250)
T ss_pred EEEEEeEEEEeC--------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEEC
Confidence 467899998773 2469999999999999999999999999999999999753 21 248999999
Q ss_pred CEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCC
Q 000937 693 GYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 693 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 767 (1218)
|.++.. ...++.++|++|++.+++. |+.||+.+..... .....+..++++.++++.+++.+..+.... ..+
T Consensus 69 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~ 144 (250)
T PRK14266 69 GVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLD-KSA 144 (250)
T ss_pred CEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCc
Confidence 987532 1335679999999888874 9999998764322 111222334567888888887532111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.+|+++++. +|
T Consensus 145 ~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~-~G 221 (250)
T PRK14266 145 LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFL-NG 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEE-CC
Confidence 58999999999999999999999999999999999999999999999864 899999999985 6777788888887 59
Q ss_pred EEEEEcCCC
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~~~~g~~~ 856 (1218)
++++.|+++
T Consensus 222 ~i~~~g~~~ 230 (250)
T PRK14266 222 EIIESGLTD 230 (250)
T ss_pred eEEEeCCHH
Confidence 999998863
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=321.13 Aligned_cols=210 Identities=26% Similarity=0.425 Sum_probs=165.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. .+.+++|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~-------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~ 66 (229)
T cd03254 2 EIEFENVNFSYDE-------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGID 66 (229)
T ss_pred eEEEEEEEEecCC-------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEe
Confidence 3678999987731 23589999999999999999999999999999999999876 48999999987
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcccccc-------ccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL-------VGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~ 765 (1218)
+.. ...++.++|++|++.+++. |++||+.+... ... .+.+++.++.+++.+..+.. .+ .
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~ 135 (229)
T cd03254 67 IRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLG-E 135 (229)
T ss_pred HHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhh-c
Confidence 532 2345679999999887775 99999976421 111 12233334444443222211 11 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
.+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||+++ + .+.+|++++|.
T Consensus 136 ~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~-~~~~d~i~~l~- 211 (229)
T cd03254 136 NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-T-IKNADKILVLD- 211 (229)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-H-HhhCCEEEEEe-
Confidence 246899999999999999999999999999999999999999999999986 5899999999975 3 45699999997
Q ss_pred CCEEEEEcCC
Q 000937 846 GGRIIYSGPL 855 (1218)
Q Consensus 846 ~G~~~~~g~~ 855 (1218)
+|++++.|+.
T Consensus 212 ~g~~~~~~~~ 221 (229)
T cd03254 212 DGKIIEEGTH 221 (229)
T ss_pred CCeEEEeCCH
Confidence 5899988764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=326.73 Aligned_cols=224 Identities=23% Similarity=0.311 Sum_probs=175.1
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GCFKGEIKV 691 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~ 691 (1218)
..+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+.+|+|.+
T Consensus 44 ~~l~i~nl~~~~~--------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i 109 (305)
T PRK14264 44 AKLSVEDLDVYYG--------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVEL 109 (305)
T ss_pred ceEEEEEEEEEeC--------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 3588999998873 24699999999999999999999999999999999998652 125899999
Q ss_pred CCEeCcc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC---------CCC-hhhHHHHHHHHHHHcCCCc
Q 000937 692 NGYPKIQ-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP---------QIN-SKTKADCVNHVLKTIELDG 756 (1218)
Q Consensus 692 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~l~l~~ 756 (1218)
+|.++.. ...++.++|++|+..+++ .||+||+.+........ ... .....+.++++++.+++.+
T Consensus 110 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 188 (305)
T PRK14264 110 DGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD 188 (305)
T ss_pred CCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch
Confidence 9987532 123567999999988777 59999999865322100 011 1223456788888888753
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh
Q 000937 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFES 836 (1218)
Q Consensus 757 ~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~ 836 (1218)
..+.... ..+.+|||||||||+||++|+++|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.
T Consensus 189 ~~~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~ 265 (305)
T PRK14264 189 EVNDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARI 265 (305)
T ss_pred hhhHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHh
Confidence 2211111 12458999999999999999999999999999999999999999999999976 489999999985 56678
Q ss_pred hceEEEEecCCEEEEEcCCC
Q 000937 837 FDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 837 ~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+|+++++.++|+++..|+++
T Consensus 266 ~d~i~~~l~~G~i~~~g~~~ 285 (305)
T PRK14264 266 SDQTAVFLTGGELVEYDDTD 285 (305)
T ss_pred cCEEEEEecCCEEEEeCCHH
Confidence 99975443469999999863
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=305.62 Aligned_cols=171 Identities=27% Similarity=0.449 Sum_probs=150.1
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (178)
T cd03229 2 ELKNVSKRYG--------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLT 65 (178)
T ss_pred EEEEEEEEEC--------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 5788888763 24699999999999999999999999999999999998876 4899999998753
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 698 Q-----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 698 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
. ...++.++|++|++.+++.+|++||+.+. |||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~ 103 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSG 103 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCH
Confidence 2 23456799999999888889999987531 899
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|.+ |+
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~ 178 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD-GK 178 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CC
Confidence 9999999999999999999999999999999999999999999887 899999999975 45568999999974 53
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=322.96 Aligned_cols=210 Identities=27% Similarity=0.409 Sum_probs=162.0
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~i~~l~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 68 (238)
T cd03249 2 EFKNVSFRYPSR-----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIR 68 (238)
T ss_pred eEEEEEEecCCC-----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehh
Confidence 578888876310 124699999999999999999999999999999999998876 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-------cccccCCCC
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK-------ESLVGIPGV 767 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~ 767 (1218)
. ...++.++|++|++.+++ .||+||+.+.... ...+ ...+.++..++.+.. ++... ..+
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 137 (238)
T cd03249 69 DLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERG 137 (238)
T ss_pred hcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHH----HHHHHHHHcChHHHHHhhccccceeec-cCC
Confidence 2 223456999999987776 6999999764211 1111 112222222222111 11111 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ +.+|++++|. +|
T Consensus 138 ~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~-~G 213 (238)
T cd03249 138 SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQ-NG 213 (238)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEE-CC
Confidence 5899999999999999999999999999999999999999999999987 7999999999975 34 5899999998 58
Q ss_pred EEEEEcCC
Q 000937 848 RIIYSGPL 855 (1218)
Q Consensus 848 ~~~~~g~~ 855 (1218)
++++.|+.
T Consensus 214 ~i~~~~~~ 221 (238)
T cd03249 214 QVVEQGTH 221 (238)
T ss_pred EEEEeCCH
Confidence 99998875
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=363.13 Aligned_cols=211 Identities=22% Similarity=0.353 Sum_probs=178.6
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++|.++. ++++|+|+|+++++||.+||+|+||||||||+|+|+|+.+|. +|+|.+||.
T Consensus 339 ~~i~~~~v~f~y~~-------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~ 403 (592)
T PRK10790 339 GRIDIDNVSFAYRD-------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT--EGEIRLDGR 403 (592)
T ss_pred CeEEEEEEEEEeCC-------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CceEEECCE
Confidence 35899999999851 236999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 764 (1218)
++.+ ..+++.++||+|++.+++. |++||+.++. ..+ ++.++++++..|+.+ -.|+.+|.
T Consensus 404 ~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e 472 (592)
T PRK10790 404 PLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGE 472 (592)
T ss_pred EhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccC
Confidence 8643 4567889999999999875 9999998742 111 234566677766543 34666766
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+.+|++|+||||||+||+.+++.+.+.|+++.+ ++|+|+++|++ +....+|++++|+
T Consensus 473 ~g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~ 548 (592)
T PRK10790 473 QG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLH 548 (592)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEE
Confidence 44 57999999999999999999999999999999999999999999999864 69999999997 4577899999997
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 549 -~G~i~~~G~~~ 559 (592)
T PRK10790 549 -RGQAVEQGTHQ 559 (592)
T ss_pred -CCEEEEEcCHH
Confidence 69999999864
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=372.23 Aligned_cols=211 Identities=27% Similarity=0.414 Sum_probs=176.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++|+++. .++++|+|+|++|++||.+||+||||||||||+|+|+|+.+|. +|+|.+||.
T Consensus 476 ~~I~~~~vsf~y~~------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~ 541 (710)
T TIGR03796 476 GYVELRNITFGYSP------------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW--SGEILFDGI 541 (710)
T ss_pred CeEEEEEEEEecCC------------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCE
Confidence 36899999999852 1346999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 764 (1218)
++.+ ..+++.++||+|++.+++ .|++||+.++. ++.+ ++.+.++++..++.+ -.|+.+|.
T Consensus 542 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e 611 (710)
T TIGR03796 542 PREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAE 611 (710)
T ss_pred eHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceecc
Confidence 8643 456788999999998875 69999997631 1122 233455566555543 35677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+++|++|+||||||+||+.++..+.+.|++ .++|+|+++|+++ ....+|++++|+
T Consensus 612 ~G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~ 685 (710)
T TIGR03796 612 GG-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLE 685 (710)
T ss_pred CC-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 54 57999999999999999999999999999999999999999999986 4899999999974 577899999997
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 686 -~G~i~~~G~~~ 696 (710)
T TIGR03796 686 -RGKVVQRGTHE 696 (710)
T ss_pred -CCEEEEecCHH
Confidence 69999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=322.41 Aligned_cols=212 Identities=17% Similarity=0.309 Sum_probs=172.6
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. +...+|+|+|++|++||+++|+||||||||||+++|+|+.+. +|+|.++|.+
T Consensus 2 ~i~~~nls~~~~~------------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~---~G~I~i~g~~ 66 (275)
T cd03289 2 QMTVKDLTAKYTE------------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT---EGDIQIDGVS 66 (275)
T ss_pred eEEEEEEEEEeCC------------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCC---CcEEEECCEE
Confidence 3789999998842 124689999999999999999999999999999999998762 7999999988
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccC------CC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI------PG 766 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~ 766 (1218)
+.. ...++.++|++|++.+++ .|++||+.... ... .+.+.+.++.+||.+..+...+. .+
T Consensus 67 i~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~ 135 (275)
T cd03289 67 WNSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG 135 (275)
T ss_pred hhhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCC
Confidence 642 234567999999998887 49999995321 111 23456777888887655543321 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
...||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++. +++|||+++|+++ ....+|++++|. +
T Consensus 136 g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~-~ 211 (275)
T cd03289 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIE-E 211 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEec-C
Confidence 24699999999999999999999999999999999999999999999874 4899999999974 345699999997 6
Q ss_pred CEEEEEcCCCC
Q 000937 847 GRIIYSGPLGN 857 (1218)
Q Consensus 847 G~~~~~g~~~~ 857 (1218)
|++++.|++++
T Consensus 212 G~i~~~g~~~~ 222 (275)
T cd03289 212 NKVRQYDSIQK 222 (275)
T ss_pred CeEeecCCHHH
Confidence 99999998753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=360.70 Aligned_cols=213 Identities=24% Similarity=0.450 Sum_probs=179.2
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++. +++.+|+|+|++++|||.+||+||||||||||+++|+|..+|. +|+|.+||.
T Consensus 337 ~~i~~~~v~f~y~~------------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~--~G~I~i~g~ 402 (574)
T PRK11160 337 VSLTLNNVSFTYPD------------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ--QGEILLNGQ 402 (574)
T ss_pred CeEEEEEEEEECCC------------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCE
Confidence 36899999999852 1246999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc------ccccccCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI------KESLVGIP 765 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~------~~~~~~~~ 765 (1218)
++.+ ..+++.++||+|++.+++ .|++||+.++. + + ..++.+.++++..++.+. .|+.+|..
T Consensus 403 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~----~~~~~i~~al~~~~l~~~i~~p~GldT~vge~ 472 (574)
T PRK11160 403 PIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-N----ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEG 472 (574)
T ss_pred EhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-c----cCHHHHHHHHHHcCCHHHHcCccccCchhcCC
Confidence 8543 356778999999998876 59999998742 1 1 123446677777777643 46667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+ ..||||||||++|||+|+++|++|+|||||++||+.++..+.+.|+++. +++|+|+++|+++ ....+|++++|+
T Consensus 473 g-~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~- 547 (574)
T PRK11160 473 G-RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMD- 547 (574)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEe-
Confidence 3 5799999999999999999999999999999999999999999999985 4899999999985 457799999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 548 ~G~i~~~g~~~ 558 (574)
T PRK11160 548 NGQIIEQGTHQ 558 (574)
T ss_pred CCeEEEeCCHH
Confidence 59999999863
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=313.78 Aligned_cols=209 Identities=22% Similarity=0.274 Sum_probs=166.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC--CE
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVN--GY 694 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~--g~ 694 (1218)
++++|+++.++.... .+.++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~-------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~ 72 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ-------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGA 72 (224)
T ss_pred EEEEeeEEEeecccC-------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCC
Confidence 578899988742100 00124799999999999999999999999999999999999876 48999998 42
Q ss_pred --eCcc---cc----ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccC
Q 000937 695 --PKIQ---ET----FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGI 764 (1218)
Q Consensus 695 --~~~~---~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~ 764 (1218)
+... .. .++.++|++|++.+++.+||+|++.+..... ........+.+.++++.+++.+. .+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 146 (224)
T TIGR02324 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP--- 146 (224)
T ss_pred ccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC---
Confidence 3211 11 1346899999998999999999998764322 12223334567888999999753 3443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|+++.+
T Consensus 147 --~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~ 222 (224)
T TIGR02324 147 --PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDV 222 (224)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEec
Confidence 3589999999999999999999999999999999999999999999999877999999999863 345678998876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=363.66 Aligned_cols=215 Identities=28% Similarity=0.453 Sum_probs=178.4
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++|+|++|.++. ++++|+|+|++++|||.+||+||||||||||+++|.|++++ .+|+|.+||.
T Consensus 327 ~~I~f~~vsf~y~~-------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~ 391 (567)
T COG1132 327 GSIEFENVSFSYPG-------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGI 391 (567)
T ss_pred CeEEEEEEEEEcCC-------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCE
Confidence 45899999999852 35799999999999999999999999999999999999887 4899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHH-----HHHHHcCCCccccccccCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVN-----HVLKTIELDGIKESLVGIPG 766 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~l~~l~l~~~~~~~~~~~~ 766 (1218)
++.. ..+++.++||+|++.+|. -|++||+.++.. +.+.++..+..+ +.++ .+.+..|+.+|..|
T Consensus 392 dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~--~lp~g~dt~vge~G 463 (567)
T COG1132 392 DIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERG 463 (567)
T ss_pred ehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccccceecCCC
Confidence 8643 456788999999998887 899999988621 122222222221 2222 33456789998554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
..||||||||++||||++.+|++|+||||||+||+.+...+.+.++++. +|+|+|+++|+++ ....+|++++|+ +
T Consensus 464 -~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~-~ 538 (567)
T COG1132 464 -VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLD-N 538 (567)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEE-C
Confidence 5799999999999999999999999999999999999999999999877 5789999999985 356699999998 5
Q ss_pred CEEEEEcCCCC
Q 000937 847 GRIIYSGPLGN 857 (1218)
Q Consensus 847 G~~~~~g~~~~ 857 (1218)
|++++.|+.++
T Consensus 539 G~i~e~G~h~e 549 (567)
T COG1132 539 GRIVERGTHEE 549 (567)
T ss_pred CEEEEecCHHH
Confidence 99999999743
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=317.50 Aligned_cols=199 Identities=25% Similarity=0.403 Sum_probs=167.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~--------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~~- 66 (251)
T PRK09544 4 LVSLENVSVSFG--------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGK- 66 (251)
T ss_pred EEEEeceEEEEC--------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCc-
Confidence 478999998873 24699999999999999999999999999999999999876 4899999872
Q ss_pred CccccccceEEEeccCCCCCCC--CCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPH--ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTE 773 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~--lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgG 773 (1218)
..++|++|++.+++. .|+.+++.+. ... ..+.+.++++.+++.+..+..+ ..||||
T Consensus 67 -------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~----~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 124 (251)
T PRK09544 67 -------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGT----KKEDILPALKRVQAGHLIDAPM-----QKLSGG 124 (251)
T ss_pred -------cCEEEeccccccccccChhHHHHHhcc------ccc----cHHHHHHHHHHcCChHHHhCCh-----hhCCHH
Confidence 358999999877665 4777776431 111 1234678899999987776654 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 774 QRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 774 erqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. + +++..
T Consensus 125 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~ 201 (251)
T PRK09544 125 ETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCS 201 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEee
Confidence 999999999999999999999999999999999999999999776 899999999985 5677899999995 4 68888
Q ss_pred cCCC
Q 000937 853 GPLG 856 (1218)
Q Consensus 853 g~~~ 856 (1218)
|+++
T Consensus 202 g~~~ 205 (251)
T PRK09544 202 GTPE 205 (251)
T ss_pred CCHH
Confidence 8763
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=303.69 Aligned_cols=160 Identities=24% Similarity=0.468 Sum_probs=142.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc----cccceEEEeccCC---CCCCC
Q 000937 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE----TFVRVSGYCEQTD---IHSPH 717 (1218)
Q Consensus 645 iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 717 (1218)
+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 79999999999999999999999999999999999876 489999999876431 2356799999984 57888
Q ss_pred CCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000937 718 ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPT 797 (1218)
Q Consensus 718 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPt 797 (1218)
+|++||+.+... ||||||||++||++|+.+|++++|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999876310 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 798 TGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 798 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+.+|++++|. +|+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~-~G~ 181 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMY-EGR 181 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEec-CCc
Confidence 999999999999999999877999999999975 6777899999997 465
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=352.63 Aligned_cols=214 Identities=22% Similarity=0.283 Sum_probs=176.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECC-
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCFKGEIKVNG- 693 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~--~~~~~~G~i~~~g- 693 (1218)
++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|.. +| .+|+|.++|
T Consensus 1 l~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p--~~G~i~~~~~ 64 (520)
T TIGR03269 1 IEVKNLTKKFD--------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIYHVA 64 (520)
T ss_pred CEEEEEEEEEC--------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC--CceEEEEecc
Confidence 35788888773 246999999999999999999999999999999999985 44 489999972
Q ss_pred ----------------------EeCc----------c---ccccceEEEeccC-CCCCCCCCHHHHHHHHHhhccCCCCC
Q 000937 694 ----------------------YPKI----------Q---ETFVRVSGYCEQT-DIHSPHITIEESLFFSAWLRLAPQIN 737 (1218)
Q Consensus 694 ----------------------~~~~----------~---~~~~~~~~~v~q~-~~~~~~lTv~e~l~~~~~~~~~~~~~ 737 (1218)
.++. . ...++.++|++|+ +.+++.+||+||+.+...... ..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~ 141 (520)
T TIGR03269 65 LCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YE 141 (520)
T ss_pred ccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CC
Confidence 2110 0 1134568999997 678888999999988654321 22
Q ss_pred hhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000937 738 SKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817 (1218)
Q Consensus 738 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 817 (1218)
..+..++++++++.+|+.+..+..+ .+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 142 ~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 216 (520)
T TIGR03269 142 GKEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVK 216 (520)
T ss_pred HHHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3344567889999999987776654 48999999999999999999999999999999999999999999999965
Q ss_pred c-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 818 T-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 818 ~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+ |+|||++||+++ .+.+.+|++++|. +|++++.|+++
T Consensus 217 ~~g~tviivtHd~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 254 (520)
T TIGR03269 217 ASGISMVLTSHWPE-VIEDLSDKAIWLE-NGEIKEEGTPD 254 (520)
T ss_pred hcCcEEEEEeCCHH-HHHHhcCEEEEEe-CCEEeeecCHH
Confidence 4 999999999985 4667899999997 58999888763
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=357.91 Aligned_cols=220 Identities=19% Similarity=0.258 Sum_probs=180.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+... .+.+++|+||||++++||++||+||||||||||+++|+|+.+|. +|+|.++|..
T Consensus 12 ~l~v~~l~~~y~~~----------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~--~G~i~~~g~~ 79 (623)
T PRK10261 12 VLAVENLNIAFMQE----------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA--GGLVQCDKML 79 (623)
T ss_pred eEEEeceEEEecCC----------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CeEEEECCEE
Confidence 48899999988421 11347999999999999999999999999999999999998764 8999999863
Q ss_pred Cc-------------cc---cc-cceEEEeccCC--CCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc
Q 000937 696 KI-------------QE---TF-VRVSGYCEQTD--IHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756 (1218)
Q Consensus 696 ~~-------------~~---~~-~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 756 (1218)
.. .. .. ++.+|||+|++ .+++.+||.||+.++..... .....+..++++++++.+||.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~ 157 (623)
T PRK10261 80 LRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPE 157 (623)
T ss_pred eccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCC
Confidence 21 00 11 24689999987 57888999999998765321 1233444567889999999963
Q ss_pred ---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHH
Q 000937 757 ---IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSID 832 (1218)
Q Consensus 757 ---~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~ 832 (1218)
..+.. +.+|||||||||+||+||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||+++ .
T Consensus 158 ~~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~ 231 (623)
T PRK10261 158 AQTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-V 231 (623)
T ss_pred hhhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-H
Confidence 34444 3589999999999999999999999999999999999999999999999865 999999999975 5
Q ss_pred HHHhhceEEEEecCCEEEEEcCCC
Q 000937 833 IFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 833 ~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+.+.+|++++|. +|+++..|+++
T Consensus 232 ~~~~adri~vl~-~G~i~~~g~~~ 254 (623)
T PRK10261 232 VAEIADRVLVMY-QGEAVETGSVE 254 (623)
T ss_pred HHHhCCEEEEee-CCeecccCCHH
Confidence 678899999998 59999988764
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=314.05 Aligned_cols=208 Identities=21% Similarity=0.321 Sum_probs=166.1
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 3 l~~~~l~~~~~~------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 68 (221)
T cd03244 3 IEFKNVSLRYRP------------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL--SSGSILIDGVDI 68 (221)
T ss_pred EEEEEEEEecCC------------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEh
Confidence 678999988742 124699999999999999999999999999999999998776 489999999875
Q ss_pred cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccc-------cccCCC
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES-------LVGIPG 766 (1218)
Q Consensus 697 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~ 766 (1218)
.. ...++.++|++|++.+++ .||+||+.+.. ... .+.+.+.++.+++.+..+. ..+ ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~ 136 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVE-EG 136 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhcccccccccc-cC
Confidence 32 234567999999988765 69999986421 111 1234555666666543321 111 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++ ..+|++++|. +
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~-~ 212 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLD-K 212 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEE-C
Confidence 468999999999999999999999999999999999999999999999864 689999999975 34 5699999997 5
Q ss_pred CEEEEEcC
Q 000937 847 GRIIYSGP 854 (1218)
Q Consensus 847 G~~~~~g~ 854 (1218)
|++++.|+
T Consensus 213 g~~~~~~~ 220 (221)
T cd03244 213 GRVVEFDS 220 (221)
T ss_pred CeEEecCC
Confidence 89988775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=332.97 Aligned_cols=208 Identities=17% Similarity=0.274 Sum_probs=170.7
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.+... ..+.+|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+
T Consensus 21 mL~lknL~~~~~~~-----------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~ 87 (549)
T PRK13545 21 FDKLKDLFFRSKDG-----------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSA 87 (549)
T ss_pred eeEEEEEEEecCCC-----------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEe
Confidence 46788888766321 124699999999999999999999999999999999999876 48999999965
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
. ++.+...+.+.+|++||+.+..... .....+..+.++++++.+++.+..+..+ +.||||||
T Consensus 88 ~----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQr 149 (549)
T PRK13545 88 A----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMK 149 (549)
T ss_pred e----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHH
Confidence 2 1122334567789999998754322 1223334456778899999987777654 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|+++..|++
T Consensus 150 QRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~-~GkIv~~G~~ 227 (549)
T PRK13545 150 SRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLH-YGQVKEYGDI 227 (549)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999999999999999999999878999999999975 5667899999997 5999999986
Q ss_pred C
Q 000937 856 G 856 (1218)
Q Consensus 856 ~ 856 (1218)
+
T Consensus 228 ~ 228 (549)
T PRK13545 228 K 228 (549)
T ss_pred H
Confidence 4
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=302.11 Aligned_cols=176 Identities=27% Similarity=0.494 Sum_probs=150.4
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++. .++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 1 i~~~~~~~~~~~------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~ 66 (178)
T cd03247 1 LSINNVSFSYPE------------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPV 66 (178)
T ss_pred CEEEEEEEEeCC------------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEH
Confidence 357888887742 113699999999999999999999999999999999998776 489999999875
Q ss_pred cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
.. ...++.++|++|++.+++ .|++||+ +..|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~ 103 (178)
T cd03247 67 SDLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGE 103 (178)
T ss_pred HHHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHH
Confidence 32 234567999999987765 6998886 13699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||++|||+|+.+|++++|||||+|||+.++..+++.|++++ +|+|||+++|+++ + .+.+|++++|. +|++++.|
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~-~~~~d~~~~l~-~g~i~~~~ 178 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-G-IEHMDKILFLE-NGKIIMQG 178 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEE-CCEEEecC
Confidence 999999999999999999999999999999999999999985 5899999999985 3 46799999997 58988654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=351.59 Aligned_cols=187 Identities=23% Similarity=0.431 Sum_probs=163.7
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCccc---cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVP---QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~~---~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|+||||++...-. ..+|+|++||+|+++.+. |+.+|+|.|||+||.. ||+||+.|... .
T Consensus 499 LVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-~-------- 568 (716)
T KOG0058|consen 499 LVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-N-------- 568 (716)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-C--------
Confidence 679999999999998775 578999999999998874 5778999999999986 99999999643 1
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++||++++|+||+|+|+.+.+.++ ||.||+.+ ..||||||||++||||++++|
T Consensus 569 -------------~t~e~i~~AAk~ANah~FI~~~p~gY-----------~T~VGEkG-~qLSGGQKQRIAIARALlr~P 623 (716)
T KOG0058|consen 569 -------------ATDEEIEAAAKMANAHEFITNFPDGY-----------NTVVGEKG-SQLSGGQKQRIAIARALLRNP 623 (716)
T ss_pred -------------CCHHHHHHHHHHhChHHHHHhCcccc-----------ccccCCcc-ccccchHHHHHHHHHHHhcCC
Confidence 23467999999999999998766554 99999843 359999999999999999999
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.||+|||+||+||+.++..|.++|.++.+ ++|+++.. ||.++++.+|+|+|+++|++++.|+|+|++.
T Consensus 624 -~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIA--HRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 624 -RVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIA--HRLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred -CEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEe--hhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 79999999999999999999999998875 35655553 6788999999999999999999999999995
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=300.94 Aligned_cols=168 Identities=28% Similarity=0.471 Sum_probs=146.7
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. +++.+++|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~------------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (173)
T cd03246 2 EVENVSFRYPG------------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADIS 67 (173)
T ss_pred EEEEEEEEcCC------------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcc
Confidence 57888887642 124699999999999999999999999999999999999876 4899999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
. ...++.++|++|++.+++ .||+||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~ 101 (173)
T cd03246 68 QWDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQ 101 (173)
T ss_pred cCCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHH
Confidence 2 234567999999987777 4999886 89999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ..+.+|++++|. +|+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~-~G~ 172 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE--TLASADRILVLE-DGR 172 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEEE-CCC
Confidence 99999999999999999999999999999999999999999877999999999974 347899999997 465
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=318.70 Aligned_cols=208 Identities=27% Similarity=0.413 Sum_probs=162.2
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. .+.+++|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~-------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~g~~~~ 66 (236)
T cd03253 2 EFENVTFAYDP-------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV--SSGSILIDGQDIR 66 (236)
T ss_pred EEEEEEEEeCC-------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEhh
Confidence 57888877631 24589999999999999999999999999999999998876 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-------cccccCCCC
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK-------ESLVGIPGV 767 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~ 767 (1218)
. ...++.++|++|+..+++ .|++||+.+... ..... .+.+.++..++.+.. ++.... .+
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~----~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~ 135 (236)
T cd03253 67 EVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDE----EVIEAAKAAQIHDKIMRFPDGYDTIVGE-RG 135 (236)
T ss_pred hCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHH----HHHHHHHHcCcHHHHHhccccccchhhc-CC
Confidence 2 234567999999988775 699999977421 11111 122223333332211 111111 14
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|+++ .+ ..+|++++|. +|
T Consensus 136 ~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~-~g 211 (236)
T cd03253 136 LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLK-DG 211 (236)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEE-CC
Confidence 58999999999999999999999999999999999999999999999977 999999999975 34 5699999998 58
Q ss_pred EEEEEcCC
Q 000937 848 RIIYSGPL 855 (1218)
Q Consensus 848 ~~~~~g~~ 855 (1218)
+++..|+.
T Consensus 212 ~i~~~~~~ 219 (236)
T cd03253 212 RIVERGTH 219 (236)
T ss_pred EEEeeCCH
Confidence 99988764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=367.61 Aligned_cols=212 Identities=26% Similarity=0.411 Sum_probs=174.5
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++|+|++|+++.. +++++|+|+|++++|||.+||+||||||||||+|+|+|..+|. +|+|.+||+
T Consensus 477 ~~I~~~nVsf~Y~~~-----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~ 543 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR-----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT--GGQVLLDGV 543 (711)
T ss_pred CeEEEEEEEEECCCC-----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCE
Confidence 358999999998531 1347999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 764 (1218)
++.+ ...++.++||+|++.+++ .|++||+.++. +..+ ++.+.++++..++.+ -.|+.+|.
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige 613 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC
Confidence 8643 346778999999998875 69999998742 1111 234556666666543 35677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+++|+|++||||||+||+.+++.+.+ .. ..+++|+|+++|+++ ..+.+|++++|+
T Consensus 614 ~G-~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~ 687 (711)
T TIGR00958 614 KG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLK 687 (711)
T ss_pred CC-CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEE
Confidence 54 5799999999999999999999999999999999999999988 22 235899999999974 578899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 688 -~G~ive~Gt~~ 698 (711)
T TIGR00958 688 -KGSVVEMGTHK 698 (711)
T ss_pred -CCEEEEeeCHH
Confidence 69999999864
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=365.56 Aligned_cols=213 Identities=26% Similarity=0.450 Sum_probs=178.0
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++|+++. .++++|+|+|++++|||.+||+||||||||||+|+|+|+.+|. +|+|.+||.
T Consensus 462 ~~I~~~~vsf~Y~~------------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~ 527 (694)
T TIGR03375 462 GEIEFRNVSFAYPG------------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT--EGSVLLDGV 527 (694)
T ss_pred ceEEEEEEEEEeCC------------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCE
Confidence 36899999999852 1346999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 764 (1218)
+..+ ..+++.++||+|++.+++ .|++||+.++. ++.+ ++.+.++++..++. +-.|+.+|.
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e 597 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGE 597 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecC
Confidence 8643 456788999999998876 59999997641 1122 23344555555443 345777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.+|++++|+
T Consensus 598 ~G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~ 673 (694)
T TIGR03375 598 RG-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMD 673 (694)
T ss_pred CC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 54 5799999999999999999999999999999999999999999999986 4799999999974 578999999997
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 674 -~G~i~e~G~~~ 684 (694)
T TIGR03375 674 -NGRIVADGPKD 684 (694)
T ss_pred -CCEEEeeCCHH
Confidence 69999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=288.95 Aligned_cols=229 Identities=25% Similarity=0.342 Sum_probs=192.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+||++++.. +++||++||++|++||+.+||||||||||||.++|+|......++|+|.++|++
T Consensus 3 ~L~I~dLhv~v~~-------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ged 69 (251)
T COG0396 3 MLEIKDLHVEVEG-------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGED 69 (251)
T ss_pred eeEEeeeEEEecC-------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcc
Confidence 4789999998842 258999999999999999999999999999999999987665678999999998
Q ss_pred Ccc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGL 770 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~L 770 (1218)
+.. +..++.+...+|.|.-+|..|+.+.|..+...+........+..+.+++.++.+++.. ..++.+. .++
T Consensus 70 I~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GF 145 (251)
T COG0396 70 ILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGF 145 (251)
T ss_pred cccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCc
Confidence 643 2345567888999999999999999988765543211112344566888999999986 5666654 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhh--ceEEEEecCCE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESF--DELILLKTGGR 848 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~--d~~~~l~~~G~ 848 (1218)
|||||||..|+..++.+|++.+||||-||||..+-+.|-+.++++++.|.+++++||.. ++.+.. |++.+|. +|+
T Consensus 146 SGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~-~Gr 222 (251)
T COG0396 146 SGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLY-DGR 222 (251)
T ss_pred CcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEE-CCE
Confidence 99999999999999999999999999999999999999999999999999999999974 678887 9999998 599
Q ss_pred EEEEcCCCCCchhhhhhhhcC
Q 000937 849 IIYSGPLGNHSSRVIEYFEGI 869 (1218)
Q Consensus 849 ~~~~g~~~~~~~~~~~~f~~~ 869 (1218)
|+..|.+ ++.++++.-
T Consensus 223 Iv~sG~~-----el~~~le~~ 238 (251)
T COG0396 223 IVKSGDP-----ELAEELEEK 238 (251)
T ss_pred EEecCCH-----HHHHHHHHh
Confidence 9999986 456666654
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=316.62 Aligned_cols=208 Identities=26% Similarity=0.406 Sum_probs=164.8
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.
T Consensus 10 ~~l~~~~l~~~~~~~-----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~ 76 (226)
T cd03248 10 GIVKFQNVTFAYPTR-----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGK 76 (226)
T ss_pred ceEEEEEEEEEeCCC-----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCC
Confidence 357899999988421 123699999999999999999999999999999999999876 4899999998
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCCh-hh--HHHHHHHHHHHc--CCCccccccccCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINS-KT--KADCVNHVLKTI--ELDGIKESLVGIPG 766 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~-~~--~~~~~~~~l~~l--~l~~~~~~~~~~~~ 766 (1218)
+... ...++.++|++|++.+++ .||+||+.++.... .... .+ ....+++.++.+ |+.+..+..
T Consensus 77 ~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 147 (226)
T cd03248 77 PISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTEVGEK----- 147 (226)
T ss_pred chHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccchhhcC-----
Confidence 7532 223467999999987775 69999997743211 0000 01 111245677777 666554444
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++ +.+|++++|. +
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~-~ 223 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLD-G 223 (226)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEec-C
Confidence 358999999999999999999999999999999999999999999999865 689999999985 44 5699999997 4
Q ss_pred CE
Q 000937 847 GR 848 (1218)
Q Consensus 847 G~ 848 (1218)
|+
T Consensus 224 g~ 225 (226)
T cd03248 224 GR 225 (226)
T ss_pred Cc
Confidence 65
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=349.48 Aligned_cols=222 Identities=19% Similarity=0.283 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
.++++|+++.++.. .+.+.+|+|+|+++++||++||+||||||||||+++|+|..++. +.+|+|.++
T Consensus 5 ~l~~~~l~~~~~~~----------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 74 (529)
T PRK15134 5 LLAIENLSVAFRQQ----------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFH 74 (529)
T ss_pred eEEEeceEEEecCC----------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEEC
Confidence 47899999988421 01247999999999999999999999999999999999987652 248999999
Q ss_pred CEeCccc------cc-cceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc---ccc
Q 000937 693 GYPKIQE------TF-VRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI---KES 760 (1218)
Q Consensus 693 g~~~~~~------~~-~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~ 760 (1218)
|+++... .. ++.+||++|++. +.+.+|+.|++.+...... .....+..++++++++.+++.+. .++
T Consensus 75 g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 152 (529)
T PRK15134 75 GESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD 152 (529)
T ss_pred CEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh
Confidence 9885321 11 246999999864 5677899999876533211 12233455678899999999753 344
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhce
Q 000937 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 761 ~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
.+ .+|||||||||+|||+|+.+|++|+|||||+|||+.++..+.++|++++++ |+|||++||+++ .+...+|+
T Consensus 153 ~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dr 226 (529)
T PRK15134 153 YP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADR 226 (529)
T ss_pred CC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCE
Confidence 43 589999999999999999999999999999999999999999999999876 899999999985 56678999
Q ss_pred EEEEecCCEEEEEcCCC
Q 000937 840 LILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~~ 856 (1218)
+++|. +|++++.|+++
T Consensus 227 i~~l~-~G~i~~~g~~~ 242 (529)
T PRK15134 227 VAVMQ-NGRCVEQNRAA 242 (529)
T ss_pred EEEEE-CCEEEEeCCHH
Confidence 99998 59999998764
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=366.26 Aligned_cols=211 Identities=26% Similarity=0.403 Sum_probs=175.9
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|.++. ++++|+|+|++|++||.+||+||||||||||+++|+|+.+|. +|+|++||.+
T Consensus 473 ~I~~~~vsf~y~~-------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~--~G~I~idg~~ 537 (708)
T TIGR01193 473 DIVINDVSYSYGY-------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFS 537 (708)
T ss_pred cEEEEEEEEEcCC-------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC--CcEEEECCEE
Confidence 5899999999841 246999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 765 (1218)
+.+ ..+++.++||+|++.+++ -|++||+.++.. +..+ ++.+.++++..++. .-.|+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 543 456788999999998876 499999987521 1122 22344555555443 3457777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+ ..||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ +|+|+|+++|+++ ..+.+|++++|+
T Consensus 609 G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~- 682 (708)
T TIGR01193 609 G-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD- 682 (708)
T ss_pred C-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE-
Confidence 4 579999999999999999999999999999999999999999999985 4899999999974 578899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 683 ~G~i~~~G~~~ 693 (708)
T TIGR01193 683 HGKIIEQGSHD 693 (708)
T ss_pred CCEEEEECCHH
Confidence 59999999863
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=281.30 Aligned_cols=193 Identities=22% Similarity=0.370 Sum_probs=166.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHI 718 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~l 718 (1218)
..++|+++|+++++||..+|.||||||||||+|+++.+.+|+ +|++++.|++.+. +.++..++||.|.+.+|+.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~--~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~- 91 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT--SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD- 91 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC--CceEEEcCccccccChHHHHHHHHHHHcCcccccc-
Confidence 457999999999999999999999999999999999998874 8999999998653 4678889999999999984
Q ss_pred CHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000937 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK-ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPT 797 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPt 797 (1218)
||++|+.|...+|... ...+...+.++.+++.+.. ++. +.+||||||||++|+|.|..-|+||+|||||
T Consensus 92 tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~-----it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 92 TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKN-----ITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcch-----hhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 9999999987766422 1334567788888887532 322 4589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 798 TGLDARAAAIVMRAVKNVA-DTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 798 sgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|+||+.+++.|-++|.++. ++.+.++.+||+++ +....+|+++-+.. |++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~-G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP-GHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc-Ccc
Confidence 9999999999999999986 66899999999986 56789999999974 654
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=311.30 Aligned_cols=195 Identities=28% Similarity=0.407 Sum_probs=160.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCC--CCCCHHHHHHHHH
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHS--PHITIEESLFFSA 728 (1218)
Q Consensus 651 ~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~ 728 (1218)
+++++||+++|+||||||||||+++|+|..++. +|+|.+||++.. ..++.++|++|++.++ ..+|+.||+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA--KGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 468899999999999999999999999988764 899999998753 2346799999998664 3489999998753
Q ss_pred hhccCC-CCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 000937 729 WLRLAP-QINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807 (1218)
Q Consensus 729 ~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~ 807 (1218)
...... ........+.++++++.+++.+..++.+ .+||||||||++||++|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 211000 0111223456788999999987776654 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 808 VMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 808 i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
+.+.|++++++|+|+|++||+++ ++.+.+|+++++ + |++++.|+.++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~ 198 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQ 198 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHH
Confidence 99999999877999999999975 577889999988 4 89999998754
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=349.63 Aligned_cols=124 Identities=26% Similarity=0.371 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEE
Q 000937 717 HITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLSTEQRKRLTIGVELVANP---SIIF 792 (1218)
Q Consensus 717 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p---~lll 792 (1218)
++||.|++.|...+. . .....+.++.+||... .+... .+||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999988865331 1 1223567889999753 44443 479999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEEcCCC
Q 000937 793 MDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK-----TGGRIIYSGPLG 856 (1218)
Q Consensus 793 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~~~~g~~~ 856 (1218)
|||||+|||+.+...+++.|+++.++|.|||+++|+++ ....+|+++.|. ++|++++.|+++
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999874 457899999993 479999999863
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=321.19 Aligned_cols=220 Identities=24% Similarity=0.367 Sum_probs=183.6
Q ss_pred cCCCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEE
Q 000937 610 LPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEI 689 (1218)
Q Consensus 610 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i 689 (1218)
+....-.++|+|++|.++ .++++|+||||++.||+.+||+||||+||||+|++|....+. .+|.|
T Consensus 531 l~~~~G~i~fsnvtF~Y~-------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv--~sGsI 595 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYD-------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV--NSGSI 595 (790)
T ss_pred ccccCCeEEEEEeEEecC-------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc--cCceE
Confidence 344456799999999985 357899999999999999999999999999999999987665 48999
Q ss_pred EECCEeCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHH--HH-HHHHcCCCcccccccc
Q 000937 690 KVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCV--NH-VLKTIELDGIKESLVG 763 (1218)
Q Consensus 690 ~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~--~~-~l~~l~l~~~~~~~~~ 763 (1218)
.+||+++.. ...|+.+|.||||..++. -|+..|+.|+. +..+.++..+.+ .. --+.++..+-.++.+|
T Consensus 596 ~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak-----~~AsneevyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 596 TIDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK-----PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred EEcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC-----CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 999999653 456788999999888875 58889998852 122333332221 11 2346788888999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
..|.+ |||||||||+|||+++.+|.+++|||.||+||..+.+.|...|.++++ ++|.|++.|+++ ..-.+|.++++
T Consensus 670 ERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS--TivnAD~ILvi 745 (790)
T KOG0056|consen 670 ERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS--TIVNADLILVI 745 (790)
T ss_pred hcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh--heecccEEEEE
Confidence 88764 999999999999999999999999999999999999999999999975 799999999986 35578999999
Q ss_pred ecCCEEEEEcCC
Q 000937 844 KTGGRIIYSGPL 855 (1218)
Q Consensus 844 ~~~G~~~~~g~~ 855 (1218)
. +|+|++.|..
T Consensus 746 ~-~G~IvErG~H 756 (790)
T KOG0056|consen 746 S-NGRIVERGRH 756 (790)
T ss_pred e-CCeEeecCcH
Confidence 8 6999999975
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=303.40 Aligned_cols=181 Identities=27% Similarity=0.357 Sum_probs=153.3
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECCEe
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCFKGEIKVNGYP 695 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~--~~~~~~G~i~~~g~~ 695 (1218)
+++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|.. +| .+|+|.+||++
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p--~~G~i~~~g~~ 65 (200)
T cd03217 2 EIKDLHVSVG--------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV--TEGEILFKGED 65 (200)
T ss_pred eEEEEEEEeC--------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC--CccEEEECCEE
Confidence 5788888763 246999999999999999999999999999999999984 44 58999999998
Q ss_pred Cccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQE---T-FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
.... . .++.++|++|++.+++..|+++++ +.. .+.||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~-----~~~LS 106 (200)
T cd03217 66 ITDLPPEERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYV-----NEGFS 106 (200)
T ss_pred CCcCCHHHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhc-----cccCC
Confidence 6431 1 234599999998888888887765 000 13699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHH-hhceEEEEecCCEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFE-SFDELILLKTGGRII 850 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~-~~d~~~~l~~~G~~~ 850 (1218)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+ .+|++++|. +|+++
T Consensus 107 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~-~G~i~ 184 (200)
T cd03217 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLY-DGRIV 184 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 3444 699999997 58999
Q ss_pred EEcCC
Q 000937 851 YSGPL 855 (1218)
Q Consensus 851 ~~g~~ 855 (1218)
..|+.
T Consensus 185 ~~~~~ 189 (200)
T cd03217 185 KSGDK 189 (200)
T ss_pred EEccH
Confidence 98853
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=356.30 Aligned_cols=211 Identities=26% Similarity=0.395 Sum_probs=174.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|.++. ++.+|+|+|++++|||.++|+||||||||||+|+|+|+.+| .+|+|.+||.+
T Consensus 334 ~I~~~~vsf~y~~-------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~ 398 (588)
T PRK13657 334 AVEFDDVSFSYDN-------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTD 398 (588)
T ss_pred eEEEEEEEEEeCC-------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 5899999999852 23589999999999999999999999999999999999887 48999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 765 (1218)
... ..+++.++|++|++.+++ -|++||+.++. ++.+. +.+.++++..++. +-.|+.+|..
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~ 468 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR-----PDATD----EEMRAAAERAQAHDFIERKPDGYDTVVGER 468 (588)
T ss_pred hhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCC
Confidence 543 356778999999998875 69999998741 11222 2344455554443 3356666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
...||||||||++|||+|+++|++++||||||+||+.++..+.+.|+++. +++|+|++||++ +..+.+|++++|.
T Consensus 469 -g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~--~~~~~~D~ii~l~- 543 (588)
T PRK13657 469 -GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRL--STVRNADRILVFD- 543 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecH--HHHHhCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999875 479999999997 4578899999997
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 544 ~G~i~~~g~~~ 554 (588)
T PRK13657 544 NGRVVESGSFD 554 (588)
T ss_pred CCEEEEeCCHH
Confidence 59999999853
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=300.83 Aligned_cols=175 Identities=30% Similarity=0.496 Sum_probs=145.8
Q ss_pred EEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc
Q 000937 619 FQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ 698 (1218)
Q Consensus 619 ~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 698 (1218)
++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~l~~~~~--------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~ 65 (180)
T cd03214 2 VENLSVGYG--------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLAS 65 (180)
T ss_pred eeEEEEEEC--------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCc
Confidence 567777763 24699999999999999999999999999999999999876 48999999987532
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000937 699 ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 699 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGer 775 (1218)
..+++.++|++| +++.+++.+..++. ++.||||||
T Consensus 66 ~~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~ 103 (180)
T cd03214 66 LSPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FNELSGGER 103 (180)
T ss_pred CCHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cccCCHHHH
Confidence 122334666666 45566666544444 347999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 776 qRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|+++ ++.+.+|+++++. +|++++.|
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~-~g~i~~~~ 180 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLK-DGRIVAQG 180 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 9999999999999999999999999999999999999999876 899999999985 5668899999998 58887653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=352.44 Aligned_cols=213 Identities=25% Similarity=0.391 Sum_probs=173.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. +++++|+|+|++++|||.++|+||||||||||+++|+|..+|. +|+|.+||.+
T Consensus 316 ~i~~~~v~~~y~~------------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~ 381 (544)
T TIGR01842 316 HLSVENVTIVPPG------------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT--SGSVRLDGAD 381 (544)
T ss_pred eEEEEEEEEEcCC------------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEe
Confidence 5899999998852 1246899999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCC-------CccccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-------DGIKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 765 (1218)
... ..+++.++|++|++.+++. |++||+.+.. +..+.+ .+.+.++..++ .+-.|+.+|..
T Consensus 382 i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~ 451 (544)
T TIGR01842 382 LKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPE----KIIEAAKLAGVHELILRLPDGYDTVIGPG 451 (544)
T ss_pred hhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHH----HHHHHHHHhChHHHHHhCccccccccCCC
Confidence 543 3456789999999988875 9999997531 111222 22223333322 22345666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
...||||||||++|||||+++|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|+++ ..+.+|++++|.
T Consensus 452 -g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~- 527 (544)
T TIGR01842 452 -GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQ- 527 (544)
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEE-
Confidence 3579999999999999999999999999999999999999999999998767899999999974 567899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 528 ~G~i~~~g~~~ 538 (544)
T TIGR01842 528 DGRIARFGERD 538 (544)
T ss_pred CCEEEeeCCHH
Confidence 59999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=295.74 Aligned_cols=218 Identities=21% Similarity=0.368 Sum_probs=182.3
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
+.-+.++|++..+. +++||+|+|++|+|||-.+|+|||||||||||++++|..+|. +|.+.+.|
T Consensus 29 ~~li~l~~v~v~r~--------------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G 92 (257)
T COG1119 29 EPLIELKNVSVRRN--------------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLG 92 (257)
T ss_pred cceEEecceEEEEC--------------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeee
Confidence 34589999998773 578999999999999999999999999999999999988774 89999999
Q ss_pred EeCcc----ccccceEEEeccC--CCCCCCCCHHHHHHHHH--hhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 694 YPKIQ----ETFVRVSGYCEQT--DIHSPHITIEESLFFSA--WLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 694 ~~~~~----~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
+.... ...++.||+|.-. ..+.++.+|+|-+.-+. ..........++..+++..+++.+|+.+..|+..+
T Consensus 93 ~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-- 170 (257)
T COG1119 93 RRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-- 170 (257)
T ss_pred eeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh--
Confidence 87432 3467889999643 34456778888774322 12222212345566788999999999999998875
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEecCCCHHHHHhhceEEEE
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT--GRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
.||-||||||-|||||+.+|++||||||++|||...+..+.+.|.+++.. +.++|++||+++ |+-..|++++++
T Consensus 171 ---~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll 246 (257)
T COG1119 171 ---SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLL 246 (257)
T ss_pred ---hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEe
Confidence 79999999999999999999999999999999999999999999999865 889999999986 788899999999
Q ss_pred ecCCEEEEEcC
Q 000937 844 KTGGRIIYSGP 854 (1218)
Q Consensus 844 ~~~G~~~~~g~ 854 (1218)
+ +|+++++|.
T Consensus 247 ~-~g~v~~~g~ 256 (257)
T COG1119 247 K-EGEVVAQGK 256 (257)
T ss_pred e-CCceeeccc
Confidence 8 599999874
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=303.16 Aligned_cols=198 Identities=20% Similarity=0.291 Sum_probs=160.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~ 71 (207)
T cd03369 6 EIEVENLSVRYAP------------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE--EGKIEIDGID 71 (207)
T ss_pred eEEEEEEEEEeCC------------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCeEEECCEE
Confidence 4789999988742 1236899999999999999999999999999999999988764 8999999987
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
... ...++.++|++|++.+++ .|++||+.+.. .... +.+.+.++ + +.. +..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~~~-----~~~LS~ 128 (207)
T cd03369 72 ISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----SEG-----GLNLSQ 128 (207)
T ss_pred hHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----cCC-----CCcCCH
Confidence 532 223567999999987776 59999996421 1111 12233333 1 222 358999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||+++ .+ ..+|++++|. +|+++..
T Consensus 129 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~-~~~d~v~~l~-~g~i~~~ 204 (207)
T cd03369 129 GQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TI-IDYDKILVMD-AGEVKEY 204 (207)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEE-CCEEEec
Confidence 99999999999999999999999999999999999999999985 4899999999975 34 4599999998 5899887
Q ss_pred cC
Q 000937 853 GP 854 (1218)
Q Consensus 853 g~ 854 (1218)
|+
T Consensus 205 g~ 206 (207)
T cd03369 205 DH 206 (207)
T ss_pred CC
Confidence 75
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=360.65 Aligned_cols=136 Identities=23% Similarity=0.335 Sum_probs=108.0
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCc
Q 000937 714 HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLSTEQRKRLTIGVELV---ANPS 789 (1218)
Q Consensus 714 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGerqRv~ia~~L~---~~p~ 789 (1218)
.+...||.|+|.++..-.........+..+++ ++++.+||.+. .+... .+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999886542211111123334455 47888999765 45553 479999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEEcCCCC
Q 000937 790 IIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK-----TGGRIIYSGPLGN 857 (1218)
Q Consensus 790 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~~~~g~~~~ 857 (1218)
+++|||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|+++..|++++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 99999999999999999999999999888999999999975 348999999995 3589999998753
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=316.29 Aligned_cols=212 Identities=22% Similarity=0.289 Sum_probs=164.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++. ..+.+++|+|++++|||+++|+||||||||||+++|+|+.++ .+|+|.++|+
T Consensus 18 ~~i~~~~l~~~~~~------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~ 83 (257)
T cd03288 18 GEIKIHDLCVRYEN------------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI--FDGKIVIDGI 83 (257)
T ss_pred ceEEEEEEEEEeCC------------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC--CCCeEEECCE
Confidence 35889999998742 124699999999999999999999999999999999998876 4899999998
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-------cccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK-------ESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~ 764 (1218)
++.. ...++.++|++|++.+++ .|++||+.... .... +.+.++++..++.+.. ++..+.
T Consensus 84 ~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~ 152 (257)
T cd03288 84 DISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE 152 (257)
T ss_pred EhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEecc
Confidence 8542 234567999999987776 59999874311 0111 1122333333332211 111221
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.++++. ++.|||+++|+++ .+ ..+|++++|.
T Consensus 153 -~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~-~~~dri~~l~ 228 (257)
T cd03288 153 -GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TI-LDADLVLVLS 228 (257)
T ss_pred -CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HH-HhCCEEEEEE
Confidence 235899999999999999999999999999999999999999999999874 4899999999986 34 4599999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+++
T Consensus 229 -~G~i~~~g~~~ 239 (257)
T cd03288 229 -RGILVECDTPE 239 (257)
T ss_pred -CCEEEEeCCHH
Confidence 59999998763
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=318.78 Aligned_cols=223 Identities=27% Similarity=0.414 Sum_probs=184.7
Q ss_pred cccCCCceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceee
Q 000937 608 MILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKG 687 (1218)
Q Consensus 608 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G 687 (1218)
+.+|...-.++.+++++. + + ..++.+|+|+||++.+||.++|+||||||||||.|+|.|..+| .+|
T Consensus 326 m~LP~P~g~L~Ve~l~~~-P--P---------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p--~~G 391 (580)
T COG4618 326 MPLPAPQGALSVERLTAA-P--P---------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP--TSG 391 (580)
T ss_pred CCCCCCCceeeEeeeeec-C--C---------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc--CCC
Confidence 445555667899999882 2 2 1356899999999999999999999999999999999998877 489
Q ss_pred EEEECCEeCc---cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHH-----HHHHHHHHHcCCCcccc
Q 000937 688 EIKVNGYPKI---QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKA-----DCVNHVLKTIELDGIKE 759 (1218)
Q Consensus 688 ~i~~~g~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~ 759 (1218)
.|++||.+.. .+.+-+.+||.||+-.+|+ -||.||+. |...+.+.++.- ..+.++ .+.+.+-.|
T Consensus 392 ~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa-----Rf~~~~d~~kIieAA~lAgvHel--Il~lP~GYd 463 (580)
T COG4618 392 SVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA-----RFGEEADPEKVIEAARLAGVHEL--ILRLPQGYD 463 (580)
T ss_pred cEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH-----hccccCCHHHHHHHHHHcChHHH--HHhCcCCcc
Confidence 9999998754 3456788999999888877 59999994 232222222111 112232 346778899
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Q 000937 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDE 839 (1218)
Q Consensus 760 ~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 839 (1218)
|.+|+.+ ..||||||||+++||||-.+|.+++||||-|+||.+....+.+.|..++++|.|+|+++|.|+ +...+|+
T Consensus 464 T~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dk 540 (580)
T COG4618 464 TRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDK 540 (580)
T ss_pred CccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcce
Confidence 9999765 689999999999999999999999999999999999999999999999999999999999985 6889999
Q ss_pred EEEEecCCEEEEEcCCC
Q 000937 840 LILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 840 ~~~l~~~G~~~~~g~~~ 856 (1218)
+++|. +|++..+|+.+
T Consensus 541 ilvl~-~G~~~~FG~r~ 556 (580)
T COG4618 541 ILVLQ-DGRIAAFGPRE 556 (580)
T ss_pred eeeec-CChHHhcCCHH
Confidence 99997 69999999974
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=345.54 Aligned_cols=207 Identities=17% Similarity=0.220 Sum_probs=173.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+| .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~--------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~~~~~ 66 (490)
T PRK10938 3 SLQISQGTFRLS--------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL--LSGERQSQFSH 66 (490)
T ss_pred eEEEEeEEEEcC--------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCceEEECCcc
Confidence 378899999873 23599999999999999999999999999999999998876 48999999876
Q ss_pred Ccc---ccccceEEEeccCCCC--C------CCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIH--S------PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~--~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 764 (1218)
... ...++.++|++|++.. + ..+||+|++.+. ....++++++++.+++.+..+..+
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~-- 133 (490)
T PRK10938 67 ITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF-- 133 (490)
T ss_pred cccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc--
Confidence 432 1233558999997542 1 147888876431 122456788999999987777765
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|.
T Consensus 134 ---~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~ 209 (490)
T PRK10938 134 ---KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLA 209 (490)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 479999999999999999999999999999999999999999999999888999999999985 5678899999997
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+++
T Consensus 210 -~G~i~~~~~~~ 220 (490)
T PRK10938 210 -DCTLAETGERE 220 (490)
T ss_pred -CCEEEEeCCHH
Confidence 59999998764
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=299.30 Aligned_cols=191 Identities=21% Similarity=0.294 Sum_probs=157.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++.+++ +|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 l~~~~l~~~~~--------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i 64 (195)
T PRK13541 2 LSLHQLQFNIE--------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYYKNCNI 64 (195)
T ss_pred eEEEEeeEEEC--------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCccc
Confidence 57889988873 134555 9999999999999999999999999999998876 489999999876
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerq 776 (1218)
.... ++.++|++|+..+++.+||+||+.+..... . ..+.++++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~ 130 (195)
T PRK13541 65 NNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQK 130 (195)
T ss_pred Chhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHH
Confidence 4322 345899999988888999999998754321 0 1345677888999877666553 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceE
Q 000937 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDEL 840 (1218)
Q Consensus 777 Rv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 840 (1218)
|++||++|+.+|++++|||||+|||+.++..+.+.|++.+++|+|+|+++|+++ ..+.+|-+
T Consensus 131 rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 131 IVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhhee
Confidence 999999999999999999999999999999999999877777999999999975 34455543
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=290.78 Aligned_cols=164 Identities=26% Similarity=0.376 Sum_probs=142.4
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 2 ~~~~~~~~~~~-------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~--- 63 (166)
T cd03223 2 ELENLSLATPD-------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW--GSGRIGMPEG--- 63 (166)
T ss_pred EEEEEEEEcCC-------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCC---
Confidence 57888887631 24699999999999999999999999999999999998776 4899999873
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000937 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777 (1218)
Q Consensus 698 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqR 777 (1218)
+.++|++|++.++ ..|++||+.+. . ...||||||||
T Consensus 64 -----~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~r 99 (166)
T cd03223 64 -----EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------W-----DDVLSGGEQQR 99 (166)
T ss_pred -----ceEEEECCCCccc-cccHHHHhhcc---------------------------------C-----CCCCCHHHHHH
Confidence 5689999997654 67999998642 0 24799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 778 LTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 778 v~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||+++ ....+|+++++.++|.
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 99999999999999999999999999999999999886 689999999974 4578999999987663
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=288.80 Aligned_cols=158 Identities=26% Similarity=0.440 Sum_probs=137.8
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+.
T Consensus 1 l~~~~l~~~~~--------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~ 64 (163)
T cd03216 1 LELRGITKRFG--------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP--DSGEILVDGKEV 64 (163)
T ss_pred CEEEEEEEEEC--------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEC
Confidence 35788888773 23699999999999999999999999999999999999876 489999999875
Q ss_pred ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 697 IQE----TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 697 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
... ..++.++|++| |||
T Consensus 65 ~~~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~ 85 (163)
T cd03216 65 SFASPRDARRAGIAMVYQ-----------------------------------------------------------LSV 85 (163)
T ss_pred CcCCHHHHHhcCeEEEEe-----------------------------------------------------------cCH
Confidence 421 12345777776 899
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+.+|+++++. +|++++
T Consensus 86 G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~-~g~i~~ 162 (163)
T cd03216 86 GERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLR-DGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEe
Confidence 9999999999999999999999999999999999999999999877999999999974 4667899999997 588864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=359.42 Aligned_cols=213 Identities=27% Similarity=0.444 Sum_probs=176.0
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++|.++. +++.+|+|+|++++|||.+||+||||||||||+|+|+|+.+|. +|+|++||.
T Consensus 454 ~~i~~~~vsf~y~~------------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~--~G~I~idg~ 519 (694)
T TIGR01846 454 GAITFENIRFRYAP------------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGV 519 (694)
T ss_pred CeEEEEEEEEEcCC------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCE
Confidence 46899999999852 1246999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~ 764 (1218)
++.+ ..+++.++||+|++.+++ .|++||+.++. +..+ .+.+.++++..++. +-.|+.++.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8643 356778999999988876 69999997631 1122 22344445554443 235677776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ .+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +|+|+|++||+++ ..+.+|++++|+
T Consensus 590 ~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 KG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 54 5799999999999999999999999999999999999999999999984 5899999999984 467799999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|++++.|+.+
T Consensus 666 -~G~i~~~g~~~ 676 (694)
T TIGR01846 666 -KGQIAESGRHE 676 (694)
T ss_pred -CCEEEEeCCHH
Confidence 59999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=348.72 Aligned_cols=212 Identities=22% Similarity=0.389 Sum_probs=174.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. +++.+|+|+|+++++||.++|+||||||||||+++|+|..+|. +|+|.+||++
T Consensus 313 ~I~~~~v~~~y~~------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~--~G~i~~~g~~ 378 (569)
T PRK10789 313 ELDVNIRQFTYPQ------------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS--EGDIRFHDIP 378 (569)
T ss_pred cEEEEEEEEECCC------------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCEEEECCEE
Confidence 5889999998852 1246899999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCC-------CccccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-------DGIKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~ 765 (1218)
... ..+++.++|++|++.+++ .|++||+.++. +..+. +.++++++..++ .+-.|+.+|..
T Consensus 379 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 448 (569)
T PRK10789 379 LTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR-----PDATQ----QEIEHVARLASVHDDILRLPQGYDTEVGER 448 (569)
T ss_pred HhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCC
Confidence 543 345678999999998886 59999997641 11122 234444555444 33446666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+ ..||||||||++|||+|+++|++++|||||++||+.++..+.+.|+++. +|+|+|+++|+++ ..+.+|++++|.
T Consensus 449 g-~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~- 523 (569)
T PRK10789 449 G-VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQ- 523 (569)
T ss_pred C-CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEe-
Confidence 3 5799999999999999999999999999999999999999999999975 5899999999974 467899999997
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 524 ~G~i~~~g~~~ 534 (569)
T PRK10789 524 HGHIAQRGNHD 534 (569)
T ss_pred CCEEEEecCHH
Confidence 59999999863
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=281.45 Aligned_cols=219 Identities=25% Similarity=0.377 Sum_probs=184.7
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC-
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG- 693 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g- 693 (1218)
..+..+|++++++ ...+|+|+||++.|||+-+|+|||||||||+|++|+|...| .+|+++++|
T Consensus 4 ~iL~~~~vsVsF~--------------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp--~~G~v~f~g~ 67 (249)
T COG4674 4 IILYLDGVSVSFG--------------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP--QEGEVLFDGD 67 (249)
T ss_pred ceEEEeceEEEEc--------------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC--CcceEEEcCc
Confidence 4578888888874 46799999999999999999999999999999999998776 389999999
Q ss_pred EeCcc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCC-----CCChhhHHHHHHHHHHHcCCCccccccccC
Q 000937 694 YPKIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAP-----QINSKTKADCVNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 694 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 764 (1218)
.++.. +..+..+|--+|.+..|+.+||+|||..+.....+- .....+.+++++++++..||.+.++...+
T Consensus 68 ~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~- 146 (249)
T COG4674 68 TDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA- 146 (249)
T ss_pred hhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-
Confidence 55432 123456888999999999999999999875422110 01123445689999999999998888765
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.||.||||++.|++-++++|++|+||||++|+-.+...+.-++|++++. +++|+++.||+. -+-+.++++.+|.
T Consensus 147 ----~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh 220 (249)
T COG4674 147 ----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLH 220 (249)
T ss_pred ----hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEe
Confidence 6999999999999999999999999999999999999999999999975 689999999975 3567789999997
Q ss_pred cCCEEEEEcCCCC
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~~~~g~~~~ 857 (1218)
.|.+...|+.++
T Consensus 221 -~G~VL~EGsld~ 232 (249)
T COG4674 221 -EGSVLAEGSLDE 232 (249)
T ss_pred -ccceeecccHHH
Confidence 599999999764
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=352.53 Aligned_cols=213 Identities=24% Similarity=0.390 Sum_probs=177.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++++++. .++.+|+|+|+++++||.++|+|+||||||||+++|+|+.+|. +|+|.+||.+
T Consensus 330 ~i~~~~v~f~y~~------------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~--~G~I~i~g~~ 395 (571)
T TIGR02203 330 DVEFRNVTFRYPG------------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD--SGQILLDGHD 395 (571)
T ss_pred eEEEEEEEEEcCC------------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEe
Confidence 5899999999852 1246999999999999999999999999999999999998874 8999999988
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 765 (1218)
..+ ...++.++|++|++.+++ -|++||+.++. +++. .++.++++++..++.+ -.|+.+|..
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~----~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~ 466 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQA----DRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466 (571)
T ss_pred HHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCC----CHHHHHHHHHHcChHHHHHhCcCcccceecCC
Confidence 542 346678999999998775 59999997641 1112 2334566677666543 346667765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+ +.||||||||++|||+++++|++++||||||+||+.+++.+.+.|++++ +++|+|++||++ +..+.+|+++++.
T Consensus 467 g-~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~- 541 (571)
T TIGR02203 467 G-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMD- 541 (571)
T ss_pred C-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEe-
Confidence 3 5799999999999999999999999999999999999999999999875 479999999997 4678899999997
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 542 ~g~i~~~g~~~ 552 (571)
T TIGR02203 542 DGRIVERGTHN 552 (571)
T ss_pred CCEEEeeCCHH
Confidence 59999998864
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=339.89 Aligned_cols=124 Identities=27% Similarity=0.367 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCcEEE
Q 000937 717 HITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLSTEQRKRLTIGVELVA---NPSIIF 792 (1218)
Q Consensus 717 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGerqRv~ia~~L~~---~p~lll 792 (1218)
++||.|.+.|...+. . .....++++.+||... .+.. .++|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~------~---i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP------S---ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc------c---hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 468888887764321 0 1124567888898753 3444 35799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe-----cCCEEEEEcCCC
Q 000937 793 MDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK-----TGGRIIYSGPLG 856 (1218)
Q Consensus 793 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~~G~~~~~g~~~ 856 (1218)
|||||+|||+..+..+++.|+++.++|.|||+++|+++ +...+|+++.|. ++|++++.|+++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999874 457899999993 479999999863
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=348.89 Aligned_cols=188 Identities=28% Similarity=0.429 Sum_probs=157.5
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|++|.++. ++++|+|+|+++++||.+||+||||||||||+|+|+|..+|. +|+|.+||.
T Consensus 333 ~~I~~~~vsf~Y~~-------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~--~G~I~i~g~ 397 (529)
T TIGR02868 333 PTLELRDLSFGYPG-------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL--QGEVTLDGV 397 (529)
T ss_pred ceEEEEEEEEecCC-------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCE
Confidence 35899999999852 235999999999999999999999999999999999998874 899999998
Q ss_pred eCc--cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccCC
Q 000937 695 PKI--QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGIP 765 (1218)
Q Consensus 695 ~~~--~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 765 (1218)
++. ...+++.++||+|++.+++ -|++||+.++. ++.+ ++.++++++..++. +-.|+.+|..
T Consensus 398 ~i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 467 (529)
T TIGR02868 398 SVSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR-----PDAT----DEELWAALERVGLADWLRSLPDGLDTVLGEG 467 (529)
T ss_pred EhhhHHHHHHhheEEEccCccccc-ccHHHHHhccC-----CCCC----HHHHHHHHHHcCCHHHHHhCcccccchhccc
Confidence 854 3456778999999998876 59999998751 1112 23455666665554 3457888875
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 829 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 829 (1218)
+ ..||||||||++|||||+++|++|+||||||+||++++..+.+.|+++. +++|+|+++|++
T Consensus 468 G-~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 468 G-ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 5 4699999999999999999999999999999999999999999999863 579999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=345.49 Aligned_cols=211 Identities=25% Similarity=0.333 Sum_probs=171.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. ++++|+|+|+++++||.++|+||||||||||+++|+|..+| .+|+|.+||.+
T Consensus 334 ~i~~~~v~~~y~~-------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 398 (585)
T TIGR01192 334 AVEFRHITFEFAN-------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP--TVGQILIDGID 398 (585)
T ss_pred eEEEEEEEEECCC-------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC--CCCEEEECCEE
Confidence 5899999998842 23589999999999999999999999999999999999887 48999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcC-------CCccccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE-------LDGIKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 765 (1218)
... ..+++.++|++|++.+++ .|++||+.++. +..+.++ +.+.++..+ +.+..|+.+|..
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~ 468 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR-----EGATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGER 468 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhccccccchhcCC
Confidence 543 346678999999988775 69999998742 1122222 222333322 233345666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
...||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++. +|+|+|+++|+++ ..+.+|++++|.
T Consensus 469 -~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~- 543 (585)
T TIGR01192 469 -GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLD- 543 (585)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999874 5899999999984 457899999998
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 544 ~G~i~~~g~~~ 554 (585)
T TIGR01192 544 QGRLIEKGSFQ 554 (585)
T ss_pred CCEEEEECCHH
Confidence 59999999863
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=300.12 Aligned_cols=196 Identities=22% Similarity=0.371 Sum_probs=149.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 1 l~~~~l~~~~~~~~---------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~--~~G~i~~~g--- 66 (204)
T cd03250 1 ISVEDASFTWDSGE---------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--LSGSVSVPG--- 66 (204)
T ss_pred CEEeEEEEecCCCC---------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCCeEEEcC---
Confidence 35788888763200 0013699999999999999999999999999999999998876 489999998
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-------cccccCCCCCC
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK-------ESLVGIPGVSG 769 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~~~ 769 (1218)
.++|++|++.++ ..|++||+.+... ... +...+.++.+++.+.. ++.... ...+
T Consensus 67 -------~i~~~~q~~~l~-~~t~~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 127 (204)
T cd03250 67 -------SIAYVSQEPWIQ-NGTIRENILFGKP------FDE----ERYEKVIKACALEPDLEILPDGDLTEIGE-KGIN 127 (204)
T ss_pred -------EEEEEecCchhc-cCcHHHHhccCCC------cCH----HHHHHHHHHcCcHHHHHhccCcccceecC-CCCc
Confidence 489999998877 5799999977421 111 1122333333332211 111221 2468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR-AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 770 LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||+|||||++|||+|+.+|++++|||||+|||+.++..+.+ ++++++++|+|||++||+++ .+. .+|++++|.+ |+
T Consensus 128 lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~-~~d~i~~l~~-G~ 204 (204)
T cd03250 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLP-HADQIVVLDN-GR 204 (204)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHh-hCCEEEEEeC-CC
Confidence 99999999999999999999999999999999999999998 56777666899999999975 344 4999999974 53
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=320.30 Aligned_cols=185 Identities=27% Similarity=0.431 Sum_probs=158.9
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChh
Q 000937 661 LMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSK 739 (1218)
Q Consensus 661 l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 739 (1218)
|+|||||||||||++|+|+.++. +|+|.++|++... ...++.++|++|+..+++++||+||+.|+...+ .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~--~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC--ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 68999999999999999998774 8999999988643 223567999999999999999999999875432 12233
Q ss_pred hHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 000937 740 TKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT- 818 (1218)
Q Consensus 740 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 818 (1218)
+..++++++++.+++.+..++.. .+|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 44567889999999988777664 479999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 819 g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
|+|+|++||+++ ++...+|++++|. +|+++..|++++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~-~G~i~~~g~~~~ 187 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMR-KGKIAQIGTPEE 187 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 999999999985 6778899999998 599999998743
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=291.08 Aligned_cols=166 Identities=33% Similarity=0.543 Sum_probs=142.5
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.++. .+..+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++..
T Consensus 2 ~~~~l~~~~~~------------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~ 67 (171)
T cd03228 2 EFKNVSFSYPG------------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLR 67 (171)
T ss_pred EEEEEEEEcCC------------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhh
Confidence 57788877631 113699999999999999999999999999999999999876 4899999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000937 698 Q---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 698 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGe 774 (1218)
. ...++.++|++|++.+++ .|+.||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~ 101 (171)
T cd03228 68 DLDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQ 101 (171)
T ss_pred hcCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHH
Confidence 2 233567999999987665 5888876 89999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++||+++ ++ +.+|++++|.+ |
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~~~~l~~-g 170 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TI-RDADRIIVLDD-G 170 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-HhCCEEEEEcC-C
Confidence 9999999999999999999999999999999999999999864 799999999985 44 44999999974 5
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=301.67 Aligned_cols=188 Identities=25% Similarity=0.366 Sum_probs=148.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc-------ccccceEEEeccCCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ-------ETFVRVSGYCEQTDIHS 715 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~ 715 (1218)
+.+++|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 4699999999999999999999999999999999999876 48999999986432 11345699999998777
Q ss_pred CCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000937 716 PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE-------SLVGIPGVSGLSTEQRKRLTIGVELVANP 788 (1218)
Q Consensus 716 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~~~~LSgGerqRv~ia~~L~~~p 788 (1218)
..|++||+.+... ... +..+++++.+++.+..+ +..+. .+..||||||||++||++|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGE-RGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCccc-CCCcCCHHHHHHHHHHHHHhhCC
Confidence 5799999976421 111 12334555556543221 11111 24689999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 789 SIIFMDEPTTGLDARAAAIVMR--AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 789 ~llllDEPtsgLD~~~~~~i~~--~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
++++|||||+|||+.++..+++ +++.+.++|+|+|++||+++ . ...+|++++|. +|
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~-~~~~d~i~~l~-~G 217 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-Y-LPHADWIIAMK-DG 217 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-H-HhhCCEEEEec-CC
Confidence 9999999999999999999998 67777666899999999985 3 46799999987 45
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=349.65 Aligned_cols=214 Identities=24% Similarity=0.376 Sum_probs=175.5
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++.. +++.+|+|+|++++|||.++|+||||||||||+|+|+|+.+|. +|+|.+||.
T Consensus 336 ~~i~~~~v~f~y~~~-----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~--~G~I~i~g~ 402 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR-----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ--SGRILLDGV 402 (576)
T ss_pred ceEEEEEEEEECCCC-----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCE
Confidence 358999999998531 1246999999999999999999999999999999999998874 899999998
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 764 (1218)
++.+ ..+++.++|+||++.+++ .|++||+.++. +..+ ++.++++++..++.+ -.|+.+|.
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~-----~~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~ 472 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR-----PDAT----DEEVEAAARAAHAHEFISALPEGYDTYLGE 472 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC-----CCCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCC
Confidence 8643 345678999999888765 69999997641 1111 233555666655532 23555665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
. ...||||||||++|||+++++|++++||||||+||+.+++.+.+.|+++. +++|+|++||++ +....+|+++.+.
T Consensus 473 ~-g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~ 548 (576)
T TIGR02204 473 R-GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMD 548 (576)
T ss_pred C-CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEE
Confidence 4 35799999999999999999999999999999999999999999999985 489999999987 4578899999998
Q ss_pred cCCEEEEEcCCC
Q 000937 845 TGGRIIYSGPLG 856 (1218)
Q Consensus 845 ~~G~~~~~g~~~ 856 (1218)
+|+++..|+.+
T Consensus 549 -~g~~~~~g~~~ 559 (576)
T TIGR02204 549 -QGRIVAQGTHA 559 (576)
T ss_pred -CCEEEeeecHH
Confidence 59999999853
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=304.46 Aligned_cols=201 Identities=20% Similarity=0.265 Sum_probs=158.2
Q ss_pred eeeeceEEEEe-----CCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCC
Q 000937 644 QLLDDVTGTLR-----PGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHI 718 (1218)
Q Consensus 644 ~iL~~vs~~i~-----~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 718 (1218)
+.++|++++++ +||+++|+||||||||||+++|+|..+|. +|+|.++|. .++|++|+....+.+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~--~G~i~~~g~---------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD--EGDIEIELD---------TVSYKPQYIKADYEG 76 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CCeEEECCc---------eEEEecccccCCCCC
Confidence 35677777775 79999999999999999999999988764 899999884 489999998777889
Q ss_pred CHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
||+|++.+...... . .....+++++.+++.+..++.+ .+|||||||||+||++|+.+|++++|||||+
T Consensus 77 tv~e~l~~~~~~~~-----~--~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~ 144 (246)
T cd03237 77 TVRDLLSSITKDFY-----T--HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSA 144 (246)
T ss_pred CHHHHHHHHhhhcc-----c--cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999876432110 0 1223567888999987766654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEE--EEcCCCCCchhhhhhhhcC
Q 000937 799 GLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRII--YSGPLGNHSSRVIEYFEGI 869 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~--~~g~~~~~~~~~~~~f~~~ 869 (1218)
+||+.++..+.+.|++++++ |+|||++||++. .+...+|++++|.. +..+ ..+++....+.+..|++..
T Consensus 145 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 145 YLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHC
Confidence 99999999999999999764 899999999975 45668999999963 3222 2334433333455555544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=292.77 Aligned_cols=202 Identities=27% Similarity=0.439 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc--ccccceEEEec-cCCCCCCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ--ETFVRVSGYCE-QTDIHSPHIT 719 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~lT 719 (1218)
..+++|+||+|++|++++++|||||||||+||+|+|+..| .+|.|.++|.+... +.+-+.+++|+ |...+...+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p--~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP--TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc--CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 4589999999999999999999999999999999999887 48999999987432 33445666654 4455666777
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsg 799 (1218)
+.|.+....... +.+.++-+++.+.+.+.|++++..+..+ +.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888876654433 3455666788899999999998877775 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 800 LDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 800 LD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
||..++..+.+.|++..+ .+.||+.+||+.+ ++...||++++++ .|+++|+|+.+
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~-~Gqlv~dg~l~ 242 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLID-QGQLVFDGTLA 242 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEee-CCcEeecccHH
Confidence 999999999999999865 4999999999997 8999999999998 59999999974
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=343.80 Aligned_cols=200 Identities=31% Similarity=0.485 Sum_probs=166.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|+++. +++++|+|+|++++|||.++|+||||||||||+|+|+|+.+|. +|+|.+||.+
T Consensus 320 ~i~~~~v~f~y~~------------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~I~~~g~~ 385 (529)
T TIGR02857 320 SLEFSGLSVAYPG------------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVP 385 (529)
T ss_pred eEEEEEEEEECCC------------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEe
Confidence 5899999999852 1246999999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccCC
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 765 (1218)
..+ ..+++.++||+|++.+++ .|++||+.++. +..+ ++.++++++..++.+ -.|+.+|..
T Consensus 386 i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~ 455 (529)
T TIGR02857 386 LADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR-----PDAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEG 455 (529)
T ss_pred hhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC-----CCCC----HHHHHHHHHHcCcHHHHHhCcccccchhccc
Confidence 643 456778999999998886 69999998742 1111 234555666666543 346777764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 843 (1218)
+ ..||||||||++|||+|+++|++++||||||+||+.+++.+.+.|+++. +++|+|+++|++ +..+.+|++++|
T Consensus 456 g-~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~--~~~~~~d~i~~l 529 (529)
T TIGR02857 456 G-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRL--ALAERADRIVVL 529 (529)
T ss_pred c-ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCH--HHHHhCCEEEeC
Confidence 4 5799999999999999999999999999999999999999999999875 589999999997 456889999874
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=337.70 Aligned_cols=219 Identities=23% Similarity=0.365 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+||++
T Consensus 4 ~l~~~nl~~~y~~~----------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~ 71 (648)
T PRK10535 4 LLELKDIRRSYPSG----------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP--TSGTYRVAGQD 71 (648)
T ss_pred EEEEeeEEEEeCCC----------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEE
Confidence 47899999988421 1124699999999999999999999999999999999999876 48999999998
Q ss_pred Cccc---c----ccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCC
Q 000937 696 KIQE---T----FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~~---~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 768 (1218)
+... . .++.++|++|+..+++.+|+.||+.+..... .....+.++++.++++.+++.+..|... .
T Consensus 72 i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~ 143 (648)
T PRK10535 72 VATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----S 143 (648)
T ss_pred cCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----c
Confidence 5431 1 1457999999999999999999998764322 1223444567888999999987777664 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
.||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|+++|+++ ..+.+|++++|. +|+
T Consensus 144 ~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~-~G~ 220 (648)
T PRK10535 144 QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIR-DGE 220 (648)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEE-CCE
Confidence 79999999999999999999999999999999999999999999999877999999999874 456799999998 599
Q ss_pred EEEEcCCCC
Q 000937 849 IIYSGPLGN 857 (1218)
Q Consensus 849 ~~~~g~~~~ 857 (1218)
+++.|+.++
T Consensus 221 i~~~g~~~~ 229 (648)
T PRK10535 221 IVRNPPAQE 229 (648)
T ss_pred EEeecCccc
Confidence 999998854
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=302.02 Aligned_cols=199 Identities=21% Similarity=0.370 Sum_probs=156.3
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
+..++++|+++. . +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|
T Consensus 37 ~~~l~i~nls~~-~---------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~--~G~I~i~g 98 (282)
T cd03291 37 DNNLFFSNLCLV-G---------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS--EGKIKHSG 98 (282)
T ss_pred CCeEEEEEEEEe-c---------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECC
Confidence 456899999873 1 25899999999999999999999999999999999998764 89999988
Q ss_pred EeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccc-------cccccCCC
Q 000937 694 YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK-------ESLVGIPG 766 (1218)
Q Consensus 694 ~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~ 766 (1218)
.++|++|++.+++. ||+||+.+.... .. ..+.+.++.+++.+.. ++.++. .
T Consensus 99 ----------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~ 156 (282)
T cd03291 99 ----------RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-G 156 (282)
T ss_pred ----------EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-C
Confidence 28999999887774 999999864211 11 1122333333433211 222221 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 767 VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV-KNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 767 ~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.+ ++++ ++.|||++||+++ . ...+|++++|.
T Consensus 157 ~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~-~~~~d~i~~l~- 232 (282)
T cd03291 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-H-LKKADKILILH- 232 (282)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-H-HHhCCEEEEEE-
Confidence 3579999999999999999999999999999999999999999865 5554 5799999999975 3 46799999997
Q ss_pred CCEEEEEcCCC
Q 000937 846 GGRIIYSGPLG 856 (1218)
Q Consensus 846 ~G~~~~~g~~~ 856 (1218)
+|++++.|+++
T Consensus 233 ~G~i~~~g~~~ 243 (282)
T cd03291 233 EGSSYFYGTFS 243 (282)
T ss_pred CCEEEEECCHH
Confidence 59999998863
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=294.83 Aligned_cols=186 Identities=19% Similarity=0.208 Sum_probs=150.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-ECCEeCccccccceEEEeccCCCCCCCCCHHHH
Q 000937 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIK-VNGYPKIQETFVRVSGYCEQTDIHSPHITIEES 723 (1218)
Q Consensus 645 iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 723 (1218)
+|+|||+++++||+++|+||||||||||+++|+|..+|. +|+|. ++|... .+.+...+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD--EGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC--CCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 799999999999999999999999999999999988764 89997 776432 12245567889999999
Q ss_pred HHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000937 724 LFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803 (1218)
Q Consensus 724 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~ 803 (1218)
+.+...... ...++ ..+.+.+.+++.+..++.+ ++||||||||++||++|+.+|++++|||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~---~~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDE---FSHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHH---HHHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 988654321 11221 2233445667776666654 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCC
Q 000937 804 AAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 804 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
++..+.+.+.+..+ ++|+|++||+++ ++...+|++++|. +|++++.|+.+
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 188 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLL-HGKITMCEDLA 188 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEE-CCeEEEeCCHH
Confidence 99999998865443 468999999985 5667899999997 59999999874
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=334.44 Aligned_cols=206 Identities=20% Similarity=0.260 Sum_probs=167.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|.++. ++++|+|+|+++++||.++|+||||||||||+++|+|..+|. +|+|.+||.+
T Consensus 322 ~i~~~~v~f~y~~-------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~ 386 (547)
T PRK10522 322 TLELRNVTFAYQD-------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKP 386 (547)
T ss_pred eEEEEEEEEEeCC-------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEE
Confidence 6899999999852 236899999999999999999999999999999999998874 8999999998
Q ss_pred Ccc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 696 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
... ..+++.++|++|++.+++ .|++|| . . ...++.+++.++.+++.+..+...+......|||
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSg 452 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSK 452 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHH-Hhhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCH
Confidence 643 345678999999987765 467766 0 1 1223456778888888754332111001247999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
|||||++|||||+++|++|+||||||+||+.++..+.+.|.+..+ .|+|+|+++|++ +....+|++++++ +|+++.
T Consensus 453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~-~G~i~e 529 (547)
T PRK10522 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMR-NGQLSE 529 (547)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEE-CCEEEE
Confidence 999999999999999999999999999999999999999986643 589999999987 4578999999998 588886
Q ss_pred Ec
Q 000937 852 SG 853 (1218)
Q Consensus 852 ~g 853 (1218)
..
T Consensus 530 ~~ 531 (547)
T PRK10522 530 LT 531 (547)
T ss_pred ec
Confidence 63
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=312.19 Aligned_cols=190 Identities=32% Similarity=0.442 Sum_probs=164.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCC--ccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEE--FVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~--~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|+|++||||||+.+...|. .+|+|.++|.+..+ ...++.+|||+|++.++|.|||+|+|+|.+++++...
T Consensus 36 llG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~----- 110 (293)
T COG1131 36 LLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK----- 110 (293)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh-----
Confidence 6899999999999999995 56999999998875 2456779999999999999999999999999986321
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+.. +..++++++.+||.+.++..+ +++|||||||++||++|+.+|
T Consensus 111 -----~~~------------------------~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P- 155 (293)
T COG1131 111 -----EEA------------------------EERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDP- 155 (293)
T ss_pred -----hHH------------------------HHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCC-
Confidence 010 113688999999999666555 579999999999999999888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHHHHh
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~yF~~ 234 (1218)
++|+|||||+|||+.++.++++.|+++++++++||++|-|++ .++..+||+|++|++|+++++|+.+++...+..
T Consensus 156 ~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 156 ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 899999999999999999999999999987668999997754 578888999999999999999999998876654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-32 Score=331.67 Aligned_cols=205 Identities=18% Similarity=0.334 Sum_probs=167.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|++++++ ++++|+|+|++|++||+++|+||||||||||||+|+|..+|. +|+|.++|.
T Consensus 2 l~i~~ls~~~~--------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~~~-- 63 (530)
T PRK15064 2 LSTANITMQFG--------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS--AGNVSLDPN-- 63 (530)
T ss_pred EEEEEEEEEeC--------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCC--
Confidence 57889998873 246999999999999999999999999999999999988764 899999872
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHHh-hc----------cCCC------------------CChhhHHHHHHH
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAW-LR----------LAPQ------------------INSKTKADCVNH 747 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~----------~~~~------------------~~~~~~~~~~~~ 747 (1218)
+.++|++|++.+++.+||+|++.++.. .+ .... ....+.++++++
T Consensus 64 ------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (530)
T PRK15064 64 ------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGE 137 (530)
T ss_pred ------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 348999999988899999999986421 00 0000 000122356788
Q ss_pred HHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Q 000937 748 VLKTIELDGIK-ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTI 826 (1218)
Q Consensus 748 ~l~~l~l~~~~-~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~ 826 (1218)
+++.+|+.+.. +..+ .+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|
T Consensus 138 ~l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivs 209 (530)
T PRK15064 138 LLLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIIS 209 (530)
T ss_pred HHHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEe
Confidence 89999997533 3333 47999999999999999999999999999999999999999999863 589999999
Q ss_pred cCCCHHHHHhhceEEEEecCCEE-EEEcCC
Q 000937 827 HQPSIDIFESFDELILLKTGGRI-IYSGPL 855 (1218)
Q Consensus 827 H~~~~~~~~~~d~~~~l~~~G~~-~~~g~~ 855 (1218)
|+++ .+.+.+|++++|. +|++ ++.|++
T Consensus 210 Hd~~-~~~~~~d~i~~l~-~g~i~~~~g~~ 237 (530)
T PRK15064 210 HDRH-FLNSVCTHMADLD-YGELRVYPGNY 237 (530)
T ss_pred CCHH-HHHhhcceEEEEe-CCEEEEecCCH
Confidence 9975 5677899999998 5888 477875
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-32 Score=332.32 Aligned_cols=211 Identities=20% Similarity=0.258 Sum_probs=168.9
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.++.+. ..++.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.
T Consensus 336 ~~i~~~~v~f~y~~~~---------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~--~G~i~~~g~ 404 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE---------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ--EGEILLDGA 404 (555)
T ss_pred ceEEEEEEEEEeCCCC---------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCE
Confidence 4689999999985310 01236999999999999999999999999999999999998874 899999999
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcccccc-ccCCCCCCC
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL-VGIPGVSGL 770 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~L 770 (1218)
++.. ..+++.++||+|++.++. -|+++|+. ....++.++++++.+++.+..+.. -|......|
T Consensus 405 ~i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~------------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~L 471 (555)
T TIGR01194 405 AVSADSRDDYRDLFSAIFADFHLFD-DLIGPDEG------------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTAL 471 (555)
T ss_pred ECCCCCHHHHHhhCcEEccChhhhh-hhhhcccc------------cchhHHHHHHHHHHcCCchhhcccccccCCcccC
Confidence 8643 345678999999987765 47777731 112334567788888887654332 222223579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK-NVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~-~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|||||||++|||+|+.+|++++|||||++||+.+++.+.+.+. .++.+|+|+|+++|+++ ..+.+|++++|+ +|++
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~-~G~i 548 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLA-AGCI 548 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999998664 55567999999999874 578999999998 5888
Q ss_pred EEE
Q 000937 850 IYS 852 (1218)
Q Consensus 850 ~~~ 852 (1218)
+..
T Consensus 549 ~~~ 551 (555)
T TIGR01194 549 VKD 551 (555)
T ss_pred EEe
Confidence 753
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-32 Score=292.73 Aligned_cols=185 Identities=23% Similarity=0.304 Sum_probs=160.0
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
+.|++|||||||.....+ ..+|+|.+||.++...+ .|+.+|++.|+..|+.+.||.||+.|..++.+.
T Consensus 37 IIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~--- 113 (339)
T COG1135 37 IIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV--- 113 (339)
T ss_pred EEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCC---
Confidence 358999999999998776 57899999998887654 367789999999999999999999998887641
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
++++.+ .+|.++++..||++.+|.+ ...|||||||||+||||+.
T Consensus 114 -------~k~ei~------------------------~RV~elLelVgL~dk~~~y-----P~qLSGGQKQRVaIARALa 157 (339)
T COG1135 114 -------PKAEIK------------------------QRVAELLELVGLSDKADRY-----PAQLSGGQKQRVAIARALA 157 (339)
T ss_pred -------CHHHHH------------------------HHHHHHHHHcCChhhhccC-----chhcCcchhhHHHHHHHHh
Confidence 223322 2478899999999999865 4679999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHh-ccceEEEEcCCcEEEecChhhHHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFH-LFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~-lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.+| +||++|||||+|||.++..|++.|+++.++.|.||++..|+ .++++ .+|||.||++|++++.|+..++..
T Consensus 158 ~~P-~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE--m~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 158 NNP-KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred cCC-CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech--HHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 888 89999999999999999999999999999999999998876 45655 499999999999999999887763
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=329.18 Aligned_cols=207 Identities=24% Similarity=0.350 Sum_probs=168.0
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|+++.+.. ++.+|+|+||+|++||+++|+|||||||||||++|+|..+| .+|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~~-------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~ 69 (556)
T PRK11819 5 YIYTMNRVSKVVPP-------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG 69 (556)
T ss_pred EEEEEeeEEEEeCC-------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC
Confidence 35889999998831 24799999999999999999999999999999999999876 4899999751
Q ss_pred eCccccccceEEEeccCCCCCCCCCHHHHHHHHHh-hc------------cCCCCC--------------------hhhH
Q 000937 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAW-LR------------LAPQIN--------------------SKTK 741 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~------------~~~~~~--------------------~~~~ 741 (1218)
..+||++|++.+++.+||.||+.++.. .+ ...... ..+.
T Consensus 70 --------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (556)
T PRK11819 70 --------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDL 141 (556)
T ss_pred --------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccch
Confidence 358999999999999999999987532 00 000000 0012
Q ss_pred HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 000937 742 ADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821 (1218)
Q Consensus 742 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~t 821 (1218)
.++++++++.+|+.. .+..+ .+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|
T Consensus 142 ~~~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~t 212 (556)
T PRK11819 142 DSQLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GT 212 (556)
T ss_pred HHHHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---Ce
Confidence 345778888999853 45543 4799999999999999999999999999999999999999999999862 59
Q ss_pred EEEEecCCCHHHHHhhceEEEEecCCEEE-EEcCC
Q 000937 822 IVCTIHQPSIDIFESFDELILLKTGGRII-YSGPL 855 (1218)
Q Consensus 822 vi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~~ 855 (1218)
||++||+++ .+.+.+|++++|. +|+++ +.|+.
T Consensus 213 viiisHd~~-~~~~~~d~i~~l~-~g~i~~~~g~~ 245 (556)
T PRK11819 213 VVAVTHDRY-FLDNVAGWILELD-RGRGIPWEGNY 245 (556)
T ss_pred EEEEeCCHH-HHHhhcCeEEEEe-CCEEEEecCCH
Confidence 999999985 5667899999998 58876 77765
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=302.87 Aligned_cols=202 Identities=19% Similarity=0.272 Sum_probs=154.3
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..+.++|++|.++. +..++++++|-+++++-+|++||||||||||||++.|...| ..|.|.-.-+
T Consensus 388 pvi~~~nv~F~y~~-------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H 452 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD-------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSH 452 (614)
T ss_pred CeEEEeccccCCCC-------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--cccccccccc
Confidence 46889999988752 22689999999999999999999999999999999998877 3787754332
Q ss_pred eCccccccceEEEeccC--CCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000937 695 PKIQETFVRVSGYCEQT--DIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLST 772 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSg 772 (1218)
. .+++..|+ +.+.-+.++-|++.=. ...+...+.++.++..+||.+..+... .++||+
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~p----~~~LS~ 512 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVVP----MSQLSD 512 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCccccccc----hhhccc
Confidence 2 12333332 3334456777766421 112344566888999999985443321 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYS 852 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~ 852 (1218)
|||+||..|+.++.+|.+|+|||||+|||..+...+.+.|... ..+||.++||.. -+-+.++++.+..+++...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999998888764 358999999975 366778888888876666676
Q ss_pred cCC
Q 000937 853 GPL 855 (1218)
Q Consensus 853 g~~ 855 (1218)
|..
T Consensus 589 G~i 591 (614)
T KOG0927|consen 589 GDI 591 (614)
T ss_pred ccH
Confidence 753
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-32 Score=254.88 Aligned_cols=180 Identities=28% Similarity=0.363 Sum_probs=156.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCEeCcc-ccccceEEEeccCCCCCCCCC
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-CFKGEIKVNGYPKIQ-ETFVRVSGYCEQTDIHSPHIT 719 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lT 719 (1218)
...+|.|+|++|.+||++-||||||||||||+..+.|...+. ..+|++.+|+++.+. ...+|++|..+|++.+||+++
T Consensus 14 g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 357899999999999999999999999999999999976543 468999999998654 345788999999999999999
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsg 799 (1218)
|.+|+.|+ +++....+.++..++..++..||.+..+.. +.+||||||-||++-|+|+..|+.++||||+|.
T Consensus 94 Vg~Nl~fA----lp~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~ 164 (213)
T COG4136 94 VGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFSR 164 (213)
T ss_pred cccceEEe----cCcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchhH
Confidence 99999985 455555567777889999999999887765 358999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH-HHhcCCEEEEEecCCC
Q 000937 800 LDARAAAIVMRAVKN-VADTGRTIVCTIHQPS 830 (1218)
Q Consensus 800 LD~~~~~~i~~~l~~-l~~~g~tvi~~~H~~~ 830 (1218)
||..-+.++.+.+-. +...|..+|.+|||..
T Consensus 165 LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 165 LDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999999999987654 4556999999999864
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=282.68 Aligned_cols=190 Identities=25% Similarity=0.357 Sum_probs=158.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|++..++..... .......+++||||+|++||+++|+|+||||||||-|+|.|+.+| ++|+|.++|++
T Consensus 4 ll~v~~l~k~f~~~~~~-----~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p--t~G~i~f~g~~ 76 (268)
T COG4608 4 LLEVKNLKKYFPVGKGF-----GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP--TSGEILFEGKD 76 (268)
T ss_pred eEEEeccEEEEeccccc-----CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC--CCceEEEcCcc
Confidence 46888998888754221 111135799999999999999999999999999999999999887 48999999987
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGe 774 (1218)
+.... .++..+++.++++.+|+.. ..++. +++|||||
T Consensus 77 i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----PhelSGGQ 114 (268)
T COG4608 77 ITKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYRY-----PHELSGGQ 114 (268)
T ss_pred hhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----CcccCchh
Confidence 53211 2345567889999999764 33332 36899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEc
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g 853 (1218)
|||+.|||||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++++||.+ -+-..+|++.+|. .|+++..|
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy-~G~iVE~g 192 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMY-LGKIVEIG 192 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEe-cCceeEec
Confidence 99999999999999999999999999999999999999999866 999999999986 4566789999998 59999999
Q ss_pred CCC
Q 000937 854 PLG 856 (1218)
Q Consensus 854 ~~~ 856 (1218)
+.+
T Consensus 193 ~~~ 195 (268)
T COG4608 193 PTE 195 (268)
T ss_pred CHH
Confidence 864
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=355.39 Aligned_cols=213 Identities=24% Similarity=0.377 Sum_probs=170.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC-CE
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVN-GY 694 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~-g~ 694 (1218)
.++++|+++.++.. +++++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.+| |.
T Consensus 382 ~I~~~nVsf~Y~~~-----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~i~~g~ 448 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR-----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT--EGDIIINDSH 448 (1466)
T ss_pred cEEEEEEEEEcCCC-----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC--CCeEEEeCCc
Confidence 68999999998531 1246999999999999999999999999999999999998874 8999995 66
Q ss_pred eCcc---ccccceEEEeccCCCCCCCCCHHHHHHHHHhhcc---------CC-----C----------------------
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRL---------AP-----Q---------------------- 735 (1218)
Q Consensus 695 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~---------~~-----~---------------------- 735 (1218)
++.. ..+++.+|||+|++.+++ .|++||+.++..... .. .
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence 6432 335678999999998887 599999998631000 00 0
Q ss_pred ---C---------ChhhHHHHHHHHHHHcCCCc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000937 736 ---I---------NSKTKADCVNHVLKTIELDG-------IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEP 796 (1218)
Q Consensus 736 ---~---------~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEP 796 (1218)
. ......+.+.++++.+++.+ ..|+.+|.. ...||||||||++|||||+++|+||+||||
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEp 606 (1466)
T PTZ00265 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEA 606 (1466)
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 0 00112244666777666543 346667755 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 797 TTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 797 tsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
||+||+.++..+.+.|+++++ +|+|+|+++|+++ ..+.+|++++|.+
T Consensus 607 TSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 607 TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSN 654 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeC
Confidence 999999999999999999975 5899999999985 4578999999985
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=325.82 Aligned_cols=206 Identities=23% Similarity=0.342 Sum_probs=164.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++++++. .+.+|+|+|++|++||+++|+|||||||||||++|+|+.+| .+|+|.+++
T Consensus 4 ~i~~~nls~~~~~-------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-- 66 (552)
T TIGR03719 4 IYTMNRVSKVVPP-------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAP-- 66 (552)
T ss_pred EEEEeeEEEecCC-------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecC--
Confidence 4789999998731 24699999999999999999999999999999999999876 489999875
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhh-cc-----------CCCCChh---------------------hHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWL-RL-----------APQINSK---------------------TKA 742 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~-~~-----------~~~~~~~---------------------~~~ 742 (1218)
...+||++|++.+++++||.||+.++... +. ......+ ...
T Consensus 67 ------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (552)
T TIGR03719 67 ------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLD 140 (552)
T ss_pred ------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhH
Confidence 13589999999889999999999875321 00 0000010 011
Q ss_pred HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 000937 743 DCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTI 822 (1218)
Q Consensus 743 ~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 822 (1218)
.+++++++.+++.. .+.. +..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.||
T Consensus 141 ~~~~~~l~~~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tv 211 (552)
T TIGR03719 141 RKLEIAMDALRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTV 211 (552)
T ss_pred HHHHHHHhhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeE
Confidence 34566777777743 3444 3579999999999999999999999999999999999999999999875 3599
Q ss_pred EEEecCCCHHHHHhhceEEEEecCCEEE-EEcCC
Q 000937 823 VCTIHQPSIDIFESFDELILLKTGGRII-YSGPL 855 (1218)
Q Consensus 823 i~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~~ 855 (1218)
|++||+++ .+...+|++++|. +|+++ +.|+.
T Consensus 212 IiisHd~~-~~~~~~d~v~~l~-~g~i~~~~g~~ 243 (552)
T TIGR03719 212 VAVTHDRY-FLDNVAGWILELD-RGRGIPWEGNY 243 (552)
T ss_pred EEEeCCHH-HHHhhcCeEEEEE-CCEEEEecCCH
Confidence 99999975 5667789999998 58865 67765
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=294.82 Aligned_cols=192 Identities=20% Similarity=0.237 Sum_probs=157.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-----------ECCEeCccc--c-c--cceEEE
Q 000937 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIK-----------VNGYPKIQE--T-F--VRVSGY 707 (1218)
Q Consensus 644 ~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~--~~~~~~ 707 (1218)
.+|+|+| .+++||+++|+|||||||||||++|+|+.+|. +|+|. ++|.+.... . . ...++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~--~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN--LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC--CceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5899999 59999999999999999999999999998874 89996 778765321 1 1 123689
Q ss_pred eccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000937 708 CEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVAN 787 (1218)
Q Consensus 708 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~ 787 (1218)
++|...+++ .++.+++.+.. . .....+.++++++.+++.+..+..+ ..||||||||++||++|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhC
Confidence 999877777 48888887642 1 1223456788999999987666553 47999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 788 PSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 788 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+.+|+++++. |++.+.|-.
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~~ 222 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGVV 222 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCcceee
Confidence 9999999999999999999999999999877999999999975 4556799999984 567766644
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-32 Score=337.77 Aligned_cols=187 Identities=28% Similarity=0.425 Sum_probs=163.6
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.||+|||||||+|...| ..+|+|++||.|+.+.+ .|+.++||+||+.+|. -||+||+.++.--
T Consensus 504 IvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p~--------- 573 (709)
T COG2274 504 IVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGNPE--------- 573 (709)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCCCC---------
Confidence 468999999999999999 46899999999999876 4788999999999886 5999999985210
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++|+.++++.|.+|.|+.+++.++ ||.||+. +.+||||||||++|||+++.+|
T Consensus 574 -------------~~~e~i~~A~~~ag~~~fI~~lP~gy-----------~t~v~E~-G~~LSGGQrQrlalARaLl~~P 628 (709)
T COG2274 574 -------------ATDEEIIEAAQLAGAHEFIENLPMGY-----------DTPVGEG-GANLSGGQRQRLALARALLSKP 628 (709)
T ss_pred -------------CCHHHHHHHHHHhCcHHHHHhccccc-----------ccccccC-CCCCCHHHHHHHHHHHHhccCC
Confidence 23467899999999999999877666 9999985 3679999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..|.+.|+++.. |+|+|+.. ||+++++.+|+|+||.+||++++|+++|+++
T Consensus 629 -~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~Ia--HRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 629 -KILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIA--HRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred -CEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEE--ccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 79999999999999999999999999863 56666655 5566999999999999999999999999997
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=273.05 Aligned_cols=155 Identities=22% Similarity=0.350 Sum_probs=129.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHH
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEE 722 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 722 (1218)
+.+++++ +++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.+ ++|++|+..
T Consensus 13 ~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~---------i~~~~q~~~--------- 71 (177)
T cd03222 13 FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDGIT---------PVYKPQYID--------- 71 (177)
T ss_pred EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CcEEEECCEE---------EEEEcccCC---------
Confidence 5688885 899999999999999999999999999998774 8999999853 678777421
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000937 723 SLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA 802 (1218)
Q Consensus 723 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~ 802 (1218)
||||||||++|||+|+.+|++++|||||+|||+
T Consensus 72 -----------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~ 104 (177)
T cd03222 72 -----------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI 104 (177)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC-CEEEEEecCCCHHHHHhhceEEEEecCCEEEEE--cCCCCCchhhhhhhh
Q 000937 803 RAAAIVMRAVKNVADTG-RTIVCTIHQPSIDIFESFDELILLKTGGRIIYS--GPLGNHSSRVIEYFE 867 (1218)
Q Consensus 803 ~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~--g~~~~~~~~~~~~f~ 867 (1218)
.++..+.+.++++++++ +|||++||+++ .+.+.+|+++++.+ +-.++. |++....+....|+.
T Consensus 105 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (177)
T cd03222 105 EQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEG-EPGVYGIASQPKGTREGINRFLR 170 (177)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcC-CCccceeccCCcchhHHHHHHHH
Confidence 99999999999997775 99999999974 45667999999975 444443 666544444445554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=266.31 Aligned_cols=205 Identities=23% Similarity=0.385 Sum_probs=165.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccc---cceEEEeccCCC--CC
Q 000937 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETF---VRVSGYCEQTDI--HS 715 (1218)
Q Consensus 641 ~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~---~~~~~~v~q~~~--~~ 715 (1218)
..+++|+++|++|..|+++-|+|.||||||||+|+|+|...+ ++|+|.++|.++++... ...++-|+|++. ..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~--t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP--TSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc--CCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 457899999999999999999999999999999999998877 48999999999765322 234677899875 58
Q ss_pred CCCCHHHHHHHHHhhccCCCCC---hhhHHHHHHHHHHHc--CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000937 716 PHITIEESLFFSAWLRLAPQIN---SKTKADCVNHVLKTI--ELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSI 790 (1218)
Q Consensus 716 ~~lTv~e~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~l--~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~l 790 (1218)
+.+|+.||+..+..-...+... ...+.+...+-++.+ ||++..++.+| -|||||||-++++.|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 9999999998865421111111 122333334444444 56677777766 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcC
Q 000937 791 IFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 791 lllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~ 854 (1218)
|+|||-|++|||.++..+++.-.++.++ +.|.+++||.+. +...+-+|.++|+ +|+|+.+-.
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh-~G~IvlDv~ 232 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLH-SGKIVLDVT 232 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEe-CCeEEEEcc
Confidence 9999999999999999999999998755 789999999886 5678889999997 699997744
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-32 Score=272.92 Aligned_cols=185 Identities=25% Similarity=0.335 Sum_probs=151.0
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCC----ccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEE----FVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~----~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
+.|++|||||||.+-..+ ..+|+|.++|.++.. ...|+.+|+|.|+-.|||.+||-||+..|-..-.
T Consensus 33 iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~------ 106 (240)
T COG1126 33 IIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK------ 106 (240)
T ss_pred EECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHc------
Confidence 579999999999998777 468999999976642 1357789999999999999999999999753210
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
.++++|-+ ....++|+.+||.+.+|.+ ...|||||||||+|||+|..+
T Consensus 107 ---~~~k~eA~------------------------~~A~~lL~~VGL~~ka~~y-----P~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 107 ---KLSKAEAR------------------------EKALELLEKVGLADKADAY-----PAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred ---CCCHHHHH------------------------HHHHHHHHHcCchhhhhhC-----ccccCcHHHHHHHHHHHHcCC
Confidence 11111111 1134679999999999965 467999999999999999998
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
| +|+++|||||+|||....+|.+.++++|+ .|.|.||..|- ..=.-+-+|||+.|++|++++.|++++..
T Consensus 155 P-~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHE-M~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 155 P-KVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHE-MGFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred C-CEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEech-hHHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 8 89999999999999999999999999997 57888887663 33445669999999999999999888665
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=284.32 Aligned_cols=225 Identities=22% Similarity=0.316 Sum_probs=185.2
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---CFKGEIKVN 692 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~ 692 (1218)
-+..+|++..+... .+..+++++|||.+++||.+||+|+||||||-..+.+.|+.+.. ..+|+|.++
T Consensus 6 lL~v~nLsV~f~~~----------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~ 75 (534)
T COG4172 6 LLSIRNLSVAFHQE----------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFD 75 (534)
T ss_pred ceeeeccEEEEecC----------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEc
Confidence 47889999888643 24578999999999999999999999999999999999976542 247999999
Q ss_pred CEeCc---cccc----cceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcccccccc
Q 000937 693 GYPKI---QETF----VRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763 (1218)
Q Consensus 693 g~~~~---~~~~----~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 763 (1218)
|.+.- +... -..|+.++|++. +.|-.|+.+-+.-..++. ...+.+..++++.++++..|+.+-...+-.
T Consensus 76 G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~ 153 (534)
T COG4172 76 GEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDA 153 (534)
T ss_pred ChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhh
Confidence 99842 2222 246899999974 678888887776554443 345566777888899999999877666655
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEE
Q 000937 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 764 ~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~ 842 (1218)
.| .+|||||||||.||+||+++|++|+.||||++||...+.+|+++|++|.++ |..++++|||++. +-+.+|++.+
T Consensus 154 yP--HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~V 230 (534)
T COG4172 154 YP--HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYV 230 (534)
T ss_pred CC--cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEEE
Confidence 44 689999999999999999999999999999999999999999999999765 9999999999863 5566799999
Q ss_pred EecCCEEEEEcCCC
Q 000937 843 LKTGGRIIYSGPLG 856 (1218)
Q Consensus 843 l~~~G~~~~~g~~~ 856 (1218)
|. .|++++.|+.+
T Consensus 231 M~-~G~ivE~~~t~ 243 (534)
T COG4172 231 MQ-HGEIVETGTTE 243 (534)
T ss_pred Ee-ccEEeecCcHH
Confidence 98 59999999864
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=294.65 Aligned_cols=215 Identities=26% Similarity=0.430 Sum_probs=178.7
Q ss_pred CceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC
Q 000937 613 QPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVN 692 (1218)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~ 692 (1218)
.+..+.|.++++.++ +++++|+++|+.+++|+.+|++||||+||||++++|-..+++. +|.|.+|
T Consensus 259 ~~g~v~F~~V~F~y~-------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~--sG~I~id 323 (497)
T COG5265 259 RLGAVAFINVSFAYD-------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITID 323 (497)
T ss_pred ccceEEEEEEEeecc-------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc--CceEEEc
Confidence 345689999999885 3578999999999999999999999999999999999988864 8999999
Q ss_pred CEeCc---cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHH-----HHHHHHHcCCCccccccccC
Q 000937 693 GYPKI---QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADC-----VNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 693 g~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~ 764 (1218)
|+++. ....++.+|.|||+..++. -|...|+.|+. +..+.++..+. +.+.++ .+.+..++.+|.
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vge 395 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGE 395 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccch
Confidence 99854 3456788999999888765 58889988752 22333333222 222222 456678899998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+.+ |||||||||+|||+++.+|+||+|||.||+||..+.+.+...|++++ .|+|.+++.|+++ ..-.+|++++|+
T Consensus 396 rglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls--ti~~adeiivl~ 471 (497)
T COG5265 396 RGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS--TIIDADEIIVLD 471 (497)
T ss_pred heee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh--hccCCceEEEee
Confidence 7764 99999999999999999999999999999999999999999999986 5899999999986 356789999998
Q ss_pred cCCEEEEEcCC
Q 000937 845 TGGRIIYSGPL 855 (1218)
Q Consensus 845 ~~G~~~~~g~~ 855 (1218)
+|++++.|+-
T Consensus 472 -~g~i~erg~h 481 (497)
T COG5265 472 -NGRIVERGTH 481 (497)
T ss_pred -CCEEEecCcH
Confidence 5999999985
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=269.98 Aligned_cols=154 Identities=23% Similarity=0.333 Sum_probs=127.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHH
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIE 721 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 721 (1218)
.+++|+|+|+++++||+++|+||||||||||||+|.+ .+|++.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~--~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPK--FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcccc--cccccEEEEhH-----------
Confidence 3579999999999999999999999999999999963 2789999886321 11233677766
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC--CcEEEEeCCCC
Q 000937 722 ESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLSTEQRKRLTIGVELVAN--PSIIFMDEPTT 798 (1218)
Q Consensus 722 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSgGerqRv~ia~~L~~~--p~llllDEPts 798 (1218)
.++++.+++... .+.. ++.||||||||++||++|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 134566777642 4443 357999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
|||+.++..+.+.|++++++|+|||++||+++ ..+.+|++++|.+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~--~~~~~d~i~~l~~ 163 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD--VLSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEECC
Confidence 99999999999999999877999999999975 3578999999963
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=262.43 Aligned_cols=143 Identities=30% Similarity=0.454 Sum_probs=127.0
Q ss_pred EEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCc
Q 000937 618 VFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697 (1218)
Q Consensus 618 ~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 697 (1218)
+++|+++.+. +.++++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 2 ~~~~l~~~~~--------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~--- 62 (144)
T cd03221 2 ELENLSKTYG--------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGST--- 62 (144)
T ss_pred EEEEEEEEEC--------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCe---
Confidence 5778887663 23699999999999999999999999999999999999876 4899999984
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000937 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777 (1218)
Q Consensus 698 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqR 777 (1218)
+.++|++| ||+||+||
T Consensus 63 -----~~i~~~~~-----------------------------------------------------------lS~G~~~r 78 (144)
T cd03221 63 -----VKIGYFEQ-----------------------------------------------------------LSGGEKMR 78 (144)
T ss_pred -----EEEEEEcc-----------------------------------------------------------CCHHHHHH
Confidence 45889888 89999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCE
Q 000937 778 LTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 778 v~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|+++ ++.+.+|+++++.+ |+
T Consensus 79 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~-g~ 144 (144)
T cd03221 79 LALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELED-GK 144 (144)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeC-CC
Confidence 99999999999999999999999999999999999986 479999999975 56677899999974 53
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=325.70 Aligned_cols=201 Identities=16% Similarity=0.261 Sum_probs=160.4
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. ++++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.+++
T Consensus 451 ~i~~~nv~~~~~~-------------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~--~~G~i~~~~-- 513 (659)
T TIGR00954 451 GIKFENIPLVTPN-------------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV--YGGRLTKPA-- 513 (659)
T ss_pred eEEEEeeEEECCC-------------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEeecC--
Confidence 5899999997631 23699999999999999999999999999999999998776 379998764
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccC----CCCCCCC
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI----PGVSGLS 771 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~----~~~~~LS 771 (1218)
++.++|++|++.+++. |++||+.++....... .....++.++++++.+++.+..++..|. .....||
T Consensus 514 ------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LS 584 (659)
T TIGR00954 514 ------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLS 584 (659)
T ss_pred ------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCC
Confidence 3568999999988776 9999998753211000 0111234567888889987655442210 0135799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
||||||++|||+|+++|++++|||||+|||+.++..+.+.+++ .|+|+|+++|+++ ..+.+|+++++..+|
T Consensus 585 gGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~~g 655 (659)
T TIGR00954 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDGRG 655 (659)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999998876 3899999999975 468899999997444
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-32 Score=305.07 Aligned_cols=187 Identities=21% Similarity=0.319 Sum_probs=159.9
Q ss_pred CCCCCCCCcchhhcccce--eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTG--LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g--~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
..|++|||||+|.+..=. ..+|+|++||.++++.+ .|+.+||||||..+|.. ||-+|+.|..-
T Consensus 383 IvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~----------- 450 (591)
T KOG0057|consen 383 IVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP----------- 450 (591)
T ss_pred EECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC-----------
Confidence 358999999999876554 48999999999999765 47889999999999976 99999999632
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
. +.++|+.++||.+..|+.+.++ ++..+|.||+.+ +-||||||||||+||+++++|
T Consensus 451 -s----------as~eeV~e~~k~a~~hd~i~~l-----------~~GY~T~VGerG-~~LSGGekQrvslaRa~lKda- 506 (591)
T KOG0057|consen 451 -S----------ASDEEVVEACKRAGLHDVISRL-----------PDGYQTLVGERG-LMLSGGEKQRVSLARAFLKDA- 506 (591)
T ss_pred -C----------cCHHHHHHHHHHcCcHHHHHhc-----------cccchhhHhhcc-cccccchHHHHHHHHHHhcCC-
Confidence 1 1235688889999998877765 455599999842 339999999999999999998
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|+++|||||.||+.|+.++++.+.+.. .++|+|+..|.+ ++...||+|++|++|++.+.|+|+|++.
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 5999999999999999999999999843 589999998665 4999999999999999999999999997
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=324.05 Aligned_cols=216 Identities=25% Similarity=0.391 Sum_probs=188.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+..++++..+.. .+.+++++|+.|++||+.+++|||||||||++|+|+|..++ .+|++.++|.+
T Consensus 564 ~~~~~~L~k~y~~-------------~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~--t~G~a~i~g~~ 628 (885)
T KOG0059|consen 564 ALVLNNLSKVYGG-------------KDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP--TSGEALIKGHD 628 (885)
T ss_pred eEEEcceeeeecc-------------hhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC--CcceEEEecCc
Confidence 4566777766532 11299999999999999999999999999999999999887 48999999988
Q ss_pred Ccc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000937 696 KIQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771 (1218)
Q Consensus 696 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LS 771 (1218)
+.. ...++.+||+||+|.+++.+|.+|++.+.++++.- .....++.++.+++.++|.+..|+.++ .+|
T Consensus 629 i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~---~~~di~~~v~~ll~~~~L~~~~~~~~~-----~yS 700 (885)
T KOG0059|consen 629 ITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGL---PRSDIGSAIEKLLRLVGLGPYANKQVR-----TYS 700 (885)
T ss_pred cccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCC---ChhHHHHHHHHHHHHcCChhhhccchh-----hCC
Confidence 643 22567899999999999999999999999998753 334455668999999999999998865 799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEE
Q 000937 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIY 851 (1218)
Q Consensus 772 gGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~ 851 (1218)
||+|||+++|.||+.+|++++|||||+|+||.+++.++++++++.++|+.||+|||.++ |...+|||+.+|. +|++..
T Consensus 701 gG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv-~G~l~c 778 (885)
T KOG0059|consen 701 GGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMV-IGQLRC 778 (885)
T ss_pred CcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheee-cCeeEE
Confidence 99999999999999999999999999999999999999999999988889999999875 5667899999998 599999
Q ss_pred EcCCC
Q 000937 852 SGPLG 856 (1218)
Q Consensus 852 ~g~~~ 856 (1218)
-|++.
T Consensus 779 iGs~q 783 (885)
T KOG0059|consen 779 IGSPQ 783 (885)
T ss_pred ecChH
Confidence 99973
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=265.11 Aligned_cols=229 Identities=22% Similarity=0.307 Sum_probs=188.7
Q ss_pred EEEEEeEEEEEecCchh----hhh----c--cCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 000937 616 TMVFQDLQYSIDTPLEM----RRR----E--CGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCF 685 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~----~~~----~--~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~ 685 (1218)
.+.++|++..++..... ... . ........+|+||||++++||.+||+|+||||||||||+|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 46778888777655321 000 0 11344578999999999999999999999999999999999999884
Q ss_pred eeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCC
Q 000937 686 KGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765 (1218)
Q Consensus 686 ~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 765 (1218)
+|+|.++|+-...-. =.--+.|.+|.+||+.+.+.+. ..+.++.++.++++++.-+|.+..|.++
T Consensus 81 ~G~v~v~G~v~~li~---------lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVAPLIE---------LGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEehhhh---------cccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 899999996421110 1123457899999999876543 3456778889999999999999999886
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+.+|.||+-|++.|.+...+|++|++||-.+--|+.=+++-.+.++++.++++|||+++|+++ .+-+.||+.++|.
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~- 221 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLE- 221 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEe-
Confidence 589999999999999999999999999999999999999999999999888899999999986 6889999999998
Q ss_pred CCEEEEEcCCCCCchhhhhhhhcC
Q 000937 846 GGRIIYSGPLGNHSSRVIEYFEGI 869 (1218)
Q Consensus 846 ~G~~~~~g~~~~~~~~~~~~f~~~ 869 (1218)
.|++.+.|.+ +++.++|...
T Consensus 222 ~G~i~~~G~~----~~vi~~Y~~~ 241 (249)
T COG1134 222 HGQIRMEGSP----EEVIPAYEED 241 (249)
T ss_pred CCEEEEcCCH----HHHHHHHHHh
Confidence 5999999998 5677777653
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=259.48 Aligned_cols=177 Identities=28% Similarity=0.385 Sum_probs=155.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccc--cccceEEEeccCCCCCCCC
Q 000937 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE--TFVRVSGYCEQTDIHSPHI 718 (1218)
Q Consensus 641 ~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~l 718 (1218)
+...++.++||++.+||.+-|.|||||||||||++|+|+..|. +|+|+++|.++... .+++..-|+-..+-+=+.+
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~--~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL 90 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD--AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL 90 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC--CCeEEecCCCCccchhhHHHHHHHhhccccccchh
Confidence 3458999999999999999999999999999999999998874 89999999886532 2445677888888888999
Q ss_pred CHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 719 TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 719 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
||.|||.|-...... ...+.+.++++.+||.+..|.+++ .||-||||||+|||-.+..+++-+||||++
T Consensus 91 Ta~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~t 159 (209)
T COG4133 91 TALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFT 159 (209)
T ss_pred hHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCccc
Confidence 999999997654422 123457889999999999999875 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Q 000937 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 830 (1218)
+||......+-.++..-+.+|-.||.+||||.
T Consensus 160 aLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 160 ALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 99999999999999998888999999999985
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=314.75 Aligned_cols=204 Identities=24% Similarity=0.313 Sum_probs=157.0
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|+++++. .+.+|+|+||+|++||++||+||||||||||||+|+|..+|+ +|+|.++|..
T Consensus 2 i~i~nls~~~g--------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd--~G~I~~~~~~- 64 (638)
T PRK10636 2 IVFSSLQIRRG--------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD--GGSYTFPGNW- 64 (638)
T ss_pred EEEEEEEEEeC--------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCCC-
Confidence 67899998883 357999999999999999999999999999999999987764 8999998742
Q ss_pred ccccccceEEEeccCCCCCCCCCHHHHHHHHH-----------------------hhcc-CCCCChhhHHHHHHHHHHHc
Q 000937 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSA-----------------------WLRL-APQINSKTKADCVNHVLKTI 752 (1218)
Q Consensus 697 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-----------------------~~~~-~~~~~~~~~~~~~~~~l~~l 752 (1218)
.++|++|+.... ..|+.+.+.-.. .+.. ...........+++++++.+
T Consensus 65 -------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 136 (638)
T PRK10636 65 -------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL 136 (638)
T ss_pred -------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Confidence 368888864332 245544432100 0000 00000112245678899999
Q ss_pred CCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCH
Q 000937 753 ELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSI 831 (1218)
Q Consensus 753 ~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 831 (1218)
|+. +..+..+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||..
T Consensus 137 gl~~~~~~~~~-----~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~- 207 (638)
T PRK10636 137 GFSNEQLERPV-----SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD- 207 (638)
T ss_pred CCCchhhcCch-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-
Confidence 996 4556654 479999999999999999999999999999999999999999998875 569999999975
Q ss_pred HHHHhhceEEEEecCCEEE-EEcCC
Q 000937 832 DIFESFDELILLKTGGRII-YSGPL 855 (1218)
Q Consensus 832 ~~~~~~d~~~~l~~~G~~~-~~g~~ 855 (1218)
.+...+|++++|. +|++. |.|+.
T Consensus 208 ~l~~~~d~i~~L~-~G~i~~~~g~~ 231 (638)
T PRK10636 208 FLDPIVDKIIHIE-QQSLFEYTGNY 231 (638)
T ss_pred HHHHhcCEEEEEe-CCEEEEecCCH
Confidence 5667899999997 58885 55654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=340.22 Aligned_cols=204 Identities=23% Similarity=0.363 Sum_probs=165.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++.. .++++|+|+|+++++||.++|+||||||||||+++|.|..++. +|.+.
T Consensus 614 ~I~~~~vsF~y~~~-----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~--~G~i~----- 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK-----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA--ETSSV----- 675 (1495)
T ss_pred cEEEEeeEEEcCCC-----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc--CCCEE-----
Confidence 58999999998531 1246899999999999999999999999999999999988763 66552
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCC-------CccccccccCCCCC
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL-------DGIKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~~~ 768 (1218)
..++.++||+|++.++. -|++|||.|+.. .+ +++.+++++..++ .+-.++.+|..|.
T Consensus 676 ----~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~~------~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~- 739 (1495)
T PLN03232 676 ----VIRGSVAYVPQVSWIFN-ATVRENILFGSD------FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGV- 739 (1495)
T ss_pred ----EecCcEEEEcCcccccc-ccHHHHhhcCCc------cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCc-
Confidence 23567999999998875 699999998621 11 2334555555544 3345688887764
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA-VKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.||||||||++||||+.++|+|++||||||+||+.+++++.+. ++.. .+|+|+|++||+++ ....+|++++|. +|
T Consensus 740 ~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~-~G 815 (1495)
T PLN03232 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVS-EG 815 (1495)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEe-CC
Confidence 6999999999999999999999999999999999999988765 5544 36899999999974 578899999997 69
Q ss_pred EEEEEcCCCC
Q 000937 848 RIIYSGPLGN 857 (1218)
Q Consensus 848 ~~~~~g~~~~ 857 (1218)
+++..|+.++
T Consensus 816 ~i~~~Gt~~e 825 (1495)
T PLN03232 816 MIKEEGTFAE 825 (1495)
T ss_pred EEEEecCHHH
Confidence 9999998653
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=245.71 Aligned_cols=224 Identities=21% Similarity=0.294 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeC
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++.+|++.++......- .+....+++.|||+++.|+.+||+|.||||||||.|+|+|..+| ++|+|++||++.
T Consensus 5 LeV~nLsKtF~~~~~lf-----~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P--TsG~il~n~~~L 77 (267)
T COG4167 5 LEVRNLSKTFRYRTGLF-----RRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGEILINDHPL 77 (267)
T ss_pred hhhhhhhhhhhhhhhhh-----hhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC--CCceEEECCccc
Confidence 35566666554332221 11235689999999999999999999999999999999999887 499999999986
Q ss_pred ccc---cccceEEEeccCCC--CCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCC
Q 000937 697 IQE---TFVRVSGYCEQTDI--HSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~~---~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~L 770 (1218)
... ...+.+-.++|++. +.|.+.+.+-|.... ++..+...+.+.+++.+.++..||.. .++.. +..|
T Consensus 78 ~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-----~~~l 150 (267)
T COG4167 78 HFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-----PHML 150 (267)
T ss_pred cccchHhhhhheeeeecCCccccChhhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccccccc-----hhhc
Confidence 432 22366889999874 668888888777654 44455667778888999999999863 33433 3579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEecCCEE
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
|.||||||++||||+.+|+|++.||...+||...+.++.+++-++.++ |.+-|.++.+.. -+-...|++++|. +|++
T Consensus 151 a~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~-EG~v 228 (267)
T COG4167 151 APGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMH-EGEV 228 (267)
T ss_pred CchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEe-cCce
Confidence 999999999999999999999999999999999999999999999765 999999999876 3667789999998 5999
Q ss_pred EEEcCCC
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 ~~~g~~~ 856 (1218)
++.|.+.
T Consensus 229 vE~G~t~ 235 (267)
T COG4167 229 VERGSTA 235 (267)
T ss_pred eecCChh
Confidence 9999874
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=338.88 Aligned_cols=203 Identities=21% Similarity=0.367 Sum_probs=167.5
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCcee-eEEEECCE
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFK-GEIKVNGY 694 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~-G~i~~~g~ 694 (1218)
.++++|+++.++.. .++.+|+|+|+++++||.++|+||||||||||+++|.|..++ .+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~-----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~GG~I~l--- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK-----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP--RSDASVVI--- 677 (1622)
T ss_pred ceEEEeeEEEccCC-----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc--CCCceEEE---
Confidence 58999999998531 124689999999999999999999999999999999998876 47 89875
Q ss_pred eCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 000937 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELD-------GIKESLVGIPGV 767 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~ 767 (1218)
++.++||+|++.++. .|++|||.|+.. . .+++.+++++..+|. +-.++.+|..+
T Consensus 678 -------~~~Iayv~Q~p~Lfn-gTIreNI~fg~~------~----d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G- 738 (1622)
T PLN03130 678 -------RGTVAYVPQVSWIFN-ATVRDNILFGSP------F----DPERYERAIDVTALQHDLDLLPGGDLTEIGERG- 738 (1622)
T ss_pred -------cCeEEEEcCccccCC-CCHHHHHhCCCc------c----cHHHHHHHHHHhCcHHHHHhCCCcccccccCCC-
Confidence 346899999998875 699999998621 1 134455666665553 33577888765
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR-AVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
..||||||||++||||+.++|+|++||||||+||+.+++++.+ .++.+. +|+|+|++||++ +....+|++++|. +
T Consensus 739 ~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~-~ 814 (1622)
T PLN03130 739 VNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVH-E 814 (1622)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEe-C
Confidence 4699999999999999999999999999999999999988864 566553 589999999997 4578899999998 6
Q ss_pred CEEEEEcCCCC
Q 000937 847 GRIIYSGPLGN 857 (1218)
Q Consensus 847 G~~~~~g~~~~ 857 (1218)
|+++..|+.++
T Consensus 815 G~i~e~Gt~~e 825 (1622)
T PLN03130 815 GMIKEEGTYEE 825 (1622)
T ss_pred CEEEEeCCHHH
Confidence 99999998654
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-30 Score=323.62 Aligned_cols=187 Identities=24% Similarity=0.303 Sum_probs=159.1
Q ss_pred CCCCCCCCcchhhcccce--eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTG--LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g--~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
+.|++|||||||.+...| ..+|+|++||.|+++.+ +|+.++||+|++.+|+. ||||||.|+..
T Consensus 381 IvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~----------- 448 (588)
T PRK11174 381 LVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP----------- 448 (588)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----------
Confidence 569999999999999988 45899999999998764 46789999999999975 99999999521
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+ .+++|++++++.+.+++++.++ ++..||.||+. ...||||||||++|||+++.+|
T Consensus 449 -~----------~~~eei~~al~~a~l~~~i~~l-----------p~G~dT~vge~-G~~LSGGQrQRialARAll~~~- 504 (588)
T PRK11174 449 -D----------ASDEQLQQALENAWVSEFLPLL-----------PQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPC- 504 (588)
T ss_pred -C----------CCHHHHHHHHHHhCHHHHHHhc-----------ccccccccccC-CCCCCHHHHHHHHHHHHHhcCC-
Confidence 0 1224678888888888777654 44559999986 3569999999999999999988
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..|.+.|+++. .++|+|+..|++ ++.+.+|+|++|.+|++++.|+|+++++
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 7999999999999999999999999875 367777776776 6889999999999999999999999985
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=256.24 Aligned_cols=141 Identities=36% Similarity=0.597 Sum_probs=124.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCCC
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHIT 719 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 719 (1218)
+.+++++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKLPLEELRRRIGYVPQ--------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccCCHHHHHhceEEEee---------
Confidence 3699999999999999999999999999999999998876 48999999987532 123456788877
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsg 799 (1218)
||+||+||++||++++.+|++++|||||+|
T Consensus 81 --------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 81 --------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEec
Q 000937 800 LDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 800 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
||..++..+.+.++++.+.++|+++++|+++ ++...+|+++++.+
T Consensus 111 lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~ 155 (157)
T cd00267 111 LDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKD 155 (157)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 9999999999999998777899999999975 45555799999974
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-31 Score=288.60 Aligned_cols=187 Identities=23% Similarity=0.352 Sum_probs=159.2
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|+|||||.+..=- .-+|+|++||.|++... .|..+|.||||.++|.. |+--|++||-
T Consensus 569 lVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----------- 636 (790)
T KOG0056|consen 569 LVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK----------- 636 (790)
T ss_pred EECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC-----------
Confidence 679999999999986653 56899999999998643 46778999999999975 9999999961
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
| + ..++|+.+++|+|..|+-+ +++++..+|+||+.+.| |||||||||+|||.+++.|
T Consensus 637 ~-~----------AsneevyaAAkAA~IHdrI-----------l~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 637 P-S----------ASNEEVYAAAKAAQIHDRI-----------LQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAP 693 (790)
T ss_pred C-C----------CChHHHHHHHHHhhHHHHH-----------hcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCC
Confidence 0 1 2346788889988777544 55666669999984332 8999999999999999998
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++|||+||+||..++++|+.+|.+++. +++|||++ ||.+++-++|.|+++++|++++.|.|+|++.
T Consensus 694 -~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvA---HRLSTivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 694 -SIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVA---HRLSTIVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred -cEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEe---eeehheecccEEEEEeCCeEeecCcHHHHHh
Confidence 79999999999999999999999999985 56777777 7888999999999999999999999999995
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=308.63 Aligned_cols=204 Identities=24% Similarity=0.316 Sum_probs=155.0
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++++. .+.+|+|+||+|++||+++|+|||||||||||++|+|..+|+ +|+|.++|..
T Consensus 3 ~l~i~~ls~~~~--------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~--~G~I~~~~~~ 66 (635)
T PRK11147 3 LISIHGAWLSFS--------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD--DGRIIYEQDL 66 (635)
T ss_pred EEEEeeEEEEeC--------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CeEEEeCCCC
Confidence 378899998883 246999999999999999999999999999999999987764 8999998731
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHH------------------------------Hhhcc-CCCCChhhHHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFS------------------------------AWLRL-APQINSKTKADC 744 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~------------------------------~~~~~-~~~~~~~~~~~~ 744 (1218)
.++|++|.+......+|.+++..+ ..+.. ...........+
T Consensus 67 --------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 138 (635)
T PRK11147 67 --------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENR 138 (635)
T ss_pred --------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 246666654333334555543211 00000 000001122456
Q ss_pred HHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Q 000937 745 VNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVC 824 (1218)
Q Consensus 745 ~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~ 824 (1218)
++++++.+|+.. +.. +.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+
T Consensus 139 ~~~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvli 208 (635)
T PRK11147 139 INEVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIF 208 (635)
T ss_pred HHHHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEE
Confidence 788899999862 444 3589999999999999999999999999999999999999999999987 359999
Q ss_pred EecCCCHHHHHhhceEEEEecCCEEE-EEcCC
Q 000937 825 TIHQPSIDIFESFDELILLKTGGRII-YSGPL 855 (1218)
Q Consensus 825 ~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~~ 855 (1218)
+|||+. .+...+|+++.|. +|+++ +.|+.
T Consensus 209 vsHd~~-~l~~~~d~i~~L~-~G~i~~~~g~~ 238 (635)
T PRK11147 209 ISHDRS-FIRNMATRIVDLD-RGKLVSYPGNY 238 (635)
T ss_pred EeCCHH-HHHHhcCeEEEEE-CCEEEEecCCH
Confidence 999975 4667799999998 58887 45654
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-30 Score=321.05 Aligned_cols=187 Identities=29% Similarity=0.419 Sum_probs=159.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.||+|||||||.+...+. .+|+|++||.|+++.+ +|+.++||+|+..+|. -||+||+.|+..
T Consensus 360 iVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~---------- 428 (567)
T COG1132 360 IVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP---------- 428 (567)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC----------
Confidence 4699999999999999983 4799999999999765 4678899999999998 699999999621
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
+ .+++|+++++|++++|+++.+++ +..||.||+. +..||||||||++|||+++++|
T Consensus 429 --~----------at~eei~~a~k~a~~~d~I~~lp-----------~g~dt~vge~-G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 429 --D----------ATDEEIEEALKLANAHEFIANLP-----------DGYDTIVGER-GVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred --C----------CCHHHHHHHHHHhChHHHHHhCc-----------ccccceecCC-CccCCHHHHHHHHHHHHHhcCC
Confidence 0 12357888999999988887654 4559999953 4569999999999999999998
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..|++.++++.+ ++|+++..|++ +++..+|+|+||++|++++.|+|++++.
T Consensus 485 -~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRl--sti~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 485 -PILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRL--STIKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred -CEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccH--hHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 69999999999999999999999998763 45655555554 6888899999999999999999999996
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=244.06 Aligned_cols=209 Identities=27% Similarity=0.404 Sum_probs=155.6
Q ss_pred EEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe-
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP- 695 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~- 695 (1218)
++.++++..|. ...-.+||||.+.|||+.+|+|+|||||||||++|+++..|+ .|+|.+.-.+
T Consensus 7 L~V~~lsk~Yg--------------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~--~G~v~Y~~r~~ 70 (258)
T COG4107 7 LSVSGLSKLYG--------------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDG 70 (258)
T ss_pred eeehhhhhhhC--------------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC--CCeEEEEcCCC
Confidence 56667666552 234588999999999999999999999999999999998874 8999886532
Q ss_pred --C-----cccc----ccceEEEeccCCCCCCCC------CHHHHHH-HHHhhccCCCCChhhHHHHHHHHHHHcCCCcc
Q 000937 696 --K-----IQET----FVRVSGYCEQTDIHSPHI------TIEESLF-FSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757 (1218)
Q Consensus 696 --~-----~~~~----~~~~~~~v~q~~~~~~~l------Tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 757 (1218)
. .+.+ .+...|+|.|++.-=-.+ .+.|-++ .++ | + --..++.+.++++..+++..
T Consensus 71 ~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~--R---H--YG~iR~~a~~WL~~VEI~~~ 143 (258)
T COG4107 71 QPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA--R---H--YGNIRAEAQDWLEEVEIDLD 143 (258)
T ss_pred CchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh--h---h--hhhHHHHHHHHHHhcccCcc
Confidence 1 1111 123479999986432122 2334332 111 1 1 11233446677888777532
Q ss_pred c-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHH
Q 000937 758 K-ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFE 835 (1218)
Q Consensus 758 ~-~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~ 835 (1218)
. |.. ++..||||+||+.|||.|++.|+++|+||||.|||...+..++++++.+..+ |.+++++|||.. +..
T Consensus 144 RiDD~-----PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~--Var 216 (258)
T COG4107 144 RIDDL-----PRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA--VAR 216 (258)
T ss_pred cccCc-----ccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH--HHH
Confidence 1 221 4689999999999999999999999999999999999999999999999766 999999999864 444
Q ss_pred -hhceEEEEecCCEEEEEcCCC
Q 000937 836 -SFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 836 -~~d~~~~l~~~G~~~~~g~~~ 856 (1218)
+.|+.++|. +|++++.|-.+
T Consensus 217 Lla~rlmvmk-~g~vve~GLTD 237 (258)
T COG4107 217 LLADRLMVMK-QGQVVESGLTD 237 (258)
T ss_pred Hhhhcceeec-CCCEecccccc
Confidence 468888887 69999999654
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=308.90 Aligned_cols=181 Identities=22% Similarity=0.259 Sum_probs=150.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-----------ECCEeCccc-----cccceE
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIK-----------VNGYPKIQE-----TFVRVS 705 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~-----~~~~~~ 705 (1218)
+..+|++++ .+++||+++|+||||||||||||+|+|..+|. +|+|. ++|.++... ..+..+
T Consensus 86 ~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~--~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 86 NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN--LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC--CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 346899999 99999999999999999999999999988874 89997 899875321 111235
Q ss_pred EEeccCCCCCCC---CCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHH
Q 000937 706 GYCEQTDIHSPH---ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGV 782 (1218)
Q Consensus 706 ~~v~q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~ 782 (1218)
++.+|.....|. .||+|++... ...+.++++++.+++.+..|+.+ .+|||||||||+||+
T Consensus 163 ~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~ia~ 225 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDI-----SELSGGELQRVAIAA 225 (590)
T ss_pred eecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHH
Confidence 666665444443 3999988531 12346788999999988777765 479999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 783 ELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 783 ~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
+|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+...+|+++++.
T Consensus 226 al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~ 285 (590)
T PRK13409 226 ALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAY 285 (590)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 99999999999999999999999999999999988 999999999985 5677889999986
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=248.13 Aligned_cols=186 Identities=18% Similarity=0.311 Sum_probs=158.6
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
+.|.+|||||||.-..-| ..+|+|++||.+.+... .+|-++.+.||..+|+.|||+||+.+... | .+..
T Consensus 30 i~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~---P----~LkL 102 (231)
T COG3840 30 ILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS---P----GLKL 102 (231)
T ss_pred EECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC---c----cccc
Confidence 468999999999988888 46899999999998654 35778999999999999999999988532 1 1111
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
. ..+ ...++.++...||..+.+-+-| .|||||||||++||.++... +
T Consensus 103 ~--a~~-------------------------r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~-P 149 (231)
T COG3840 103 N--AEQ-------------------------REKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQ-P 149 (231)
T ss_pred C--HHH-------------------------HHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccC-C
Confidence 1 111 1246788999999999987754 49999999999999999988 4
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
||+||||-|+||+.-+.+....+.+++++++.|+++..|||. ++.+.+|+++++++|+|.++|+.++...
T Consensus 150 ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 150 ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999999999999999999999999999999989876 7889999999999999999999987763
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=267.76 Aligned_cols=173 Identities=23% Similarity=0.317 Sum_probs=136.3
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHHHHH
Q 000937 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLF 725 (1218)
Q Consensus 646 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 725 (1218)
|.-=.+++..||+++++||||-||||+.++|+|..+|+ +|+ .. .-.++|-||--.--...||++.+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 44445788899999999999999999999999998874 665 11 123678888655557789999876
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000937 726 FSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAA 805 (1218)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~ 805 (1218)
-...-+.. ..-...++.+-|.|+.+.|..+ .+|||||.|||+||.+|..++++.+||||++-||.+.+
T Consensus 424 ~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFG-------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcc-------cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 43322111 1123457788899998888876 48999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhhceEEEEe
Q 000937 806 AIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 806 ~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
..+-+.||++... ++|.+++.||.-+ +--..|++++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999865 8999999998743 223457777764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-29 Score=258.93 Aligned_cols=187 Identities=24% Similarity=0.302 Sum_probs=162.6
Q ss_pred CCCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
.|.|++||||||+.|-... ..+|+|++||.++.+.+ +||.+|||-|+--|||.+||.||+.+--++++-+
T Consensus 31 vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~---- 106 (309)
T COG1125 31 VLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD---- 106 (309)
T ss_pred EEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCC----
Confidence 3679999999999997776 45799999999999764 5788999999999999999999999987776421
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcc--cccceecCCcCCcCCccccchhhHHHHHh
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDI--CADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~--~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
+++. +.+++++++.+||+. .+| .+.+.|||||+|||-||||+.
T Consensus 107 ------k~~i------------------------~~r~~ELl~lvgL~p~~~~~-----RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 107 ------KERI------------------------KKRADELLDLVGLDPSEYAD-----RYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred ------HHHH------------------------HHHHHHHHHHhCCCHHHHhh-----cCchhcCcchhhHHHHHHHHh
Confidence 1111 124788999999974 455 456789999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.+| +|+++|||-++|||.++.++++.++++-++-++|||...| -..|.++++|||++|++|+++.+|++++++.
T Consensus 152 adP-~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTH-DidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 152 ADP-PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTH-DIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred cCC-CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEec-CHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 988 6999999999999999999999999999999999999865 7899999999999999999999999999885
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=293.06 Aligned_cols=186 Identities=27% Similarity=0.382 Sum_probs=154.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|||||+|.....|. .+|+|++||.+.++.+ +++.++||+|++.+|+. |+|||+.++..-
T Consensus 352 lvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~--------- 421 (559)
T COG4988 352 LVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD--------- 421 (559)
T ss_pred EECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc---------
Confidence 6799999999999999994 6799999999999775 67889999999999985 999999996321
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
..++++.++.+.+...++..+ ++..||.||+. ++||||||+|||++||+++.++
T Consensus 422 -------------~s~e~i~~al~~a~l~~~v~~------------p~GLdt~ige~-G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 422 -------------ASDEEIIAALDQAGLLEFVPK------------PDGLDTVIGEG-GAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred -------------CCHHHHHHHHHHhcHHHhhcC------------CCcccchhccC-CCCCCHHHHHHHHHHHHhcCCC
Confidence 112345555555544444332 45669999985 5889999999999999998876
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+++++||||++||..|+..|++.|.++++ ++|++++- |+.+.....|+|++|++|+++++|.++++.+
T Consensus 476 -~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~it--Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 476 -SLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVIT--HRLEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred -CEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEE--cChHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 79999999999999999999999999996 34555544 6677999999999999999999999999975
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=263.12 Aligned_cols=174 Identities=26% Similarity=0.370 Sum_probs=146.4
Q ss_pred CCCCCCCCCcchhhcccce---eEEEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVP-------QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVG 72 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~~-------~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~ 72 (1218)
.+.|++|||||||....+| ..+|.|.++|.++...+. ++.+|||.|+-.|+|++||+||+...+..++..
T Consensus 35 aI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~ 114 (226)
T COG1136 35 AIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS 114 (226)
T ss_pred EEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC
Confidence 3579999999999999998 467999999988886542 356899999999999999999999877665421
Q ss_pred CchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCccccc-ceecCCcCCcCCccccchhhHHH
Q 000937 73 SRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICAD-TLVGDAIRRGISGGQKRRLTTGR 151 (1218)
Q Consensus 73 ~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~d-T~VG~~~~rGLSGGeKrRvSIA~ 151 (1218)
.+++ ....+.+++.+||++-.+ ..+ ..|||||||||||||
T Consensus 115 ----------~~~~------------------------~~~~~~l~~~lgl~~~~~~~~p-----~eLSGGqqQRVAIAR 155 (226)
T COG1136 115 ----------AGRR------------------------KRAAEELLEVLGLEDRLLKKKP-----SELSGGQQQRVAIAR 155 (226)
T ss_pred ----------hhHH------------------------HHHHHHHHHhcCChhhhccCCc-----hhcCHHHHHHHHHHH
Confidence 0000 113567899999997776 554 459999999999999
Q ss_pred HHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCc
Q 000937 152 EMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGK 218 (1218)
Q Consensus 152 ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ 218 (1218)
+++.+| +|++.||||..||+.++..|++.+++++++.|+|+|++. |.+++...+||++.|.+|+
T Consensus 156 AL~~~P-~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VT--Hd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 156 ALINNP-KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVT--HDPELAKYADRVIELKDGK 219 (226)
T ss_pred HHhcCC-CeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEc--CCHHHHHhCCEEEEEeCCe
Confidence 998887 899999999999999999999999999988898888886 4566899999999999999
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=279.37 Aligned_cols=187 Identities=26% Similarity=0.371 Sum_probs=164.6
Q ss_pred CCCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
.|.|++||||||+.+..-|. .+|+|.+||.++++... +|.+++|.|...|+|.+||+||+.|..++++..
T Consensus 33 vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~------ 106 (338)
T COG3839 33 VLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVP------ 106 (338)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCc------
Confidence 37899999999999999983 67999999999998654 578999999999999999999999998887421
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+++ + +.+|+++.+.|+|+|-.|.+. +.|||||||||||||+++++|
T Consensus 107 ----k~e----------i--------------~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQRVAlaRAlVr~P- 152 (338)
T COG3839 107 ----KAE----------I--------------DKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKP- 152 (338)
T ss_pred ----hHH----------H--------------HHHHHHHHHHcCChhHHhcCc-----ccCChhhHHHHHHHHHHhcCC-
Confidence 122 1 124788999999999999764 679999999999999999998
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++||||.|.||+......-..++++-++.+.|+|...| --.|...++|||+||.+|++...|++.++.+
T Consensus 153 ~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTH-Dq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTH-DQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred CEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcC-CHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 7999999999999999999999999998878888777755 5679999999999999999999999999986
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=329.45 Aligned_cols=203 Identities=22% Similarity=0.392 Sum_probs=163.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|+++.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 636 ~i~~~~~~~~~~~------------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g-- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR------------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKG-- 699 (1522)
T ss_pred cEEEEEeEEEcCC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc--CCcEEEECC--
Confidence 5899999998842 124699999999999999999999999999999999998876 489999987
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHc------CC-CccccccccCCCCC
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI------EL-DGIKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l------~l-~~~~~~~~~~~~~~ 768 (1218)
.++||+|++.++ +.|++||+.|+.. ... ++.+++++.. +. .+-.++.+|..+ .
T Consensus 700 --------~i~yv~Q~~~l~-~~Ti~eNI~~g~~------~~~----~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g-~ 759 (1522)
T TIGR00957 700 --------SVAYVPQQAWIQ-NDSLRENILFGKA------LNE----KYYQQVLEACALLPDLEILPSGDRTEIGEKG-V 759 (1522)
T ss_pred --------EEEEEcCCcccc-CCcHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhcCCCCCceecCCC-C
Confidence 389999998765 5799999988521 111 1122333332 22 223355666654 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH--HhcCCEEEEEecCCCHHHHHhhceEEEEecC
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV--ADTGRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 769 ~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l--~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
+||||||||++|||||+.+|++++||||||+||+.+++.+.+.+.+. ..+|+|+|++||+++ ....+|++++|. +
T Consensus 760 ~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~-~ 836 (1522)
T TIGR00957 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMS-G 836 (1522)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEec-C
Confidence 79999999999999999999999999999999999999999998753 235899999999975 456799999997 6
Q ss_pred CEEEEEcCCCC
Q 000937 847 GRIIYSGPLGN 857 (1218)
Q Consensus 847 G~~~~~g~~~~ 857 (1218)
|+++..|+.++
T Consensus 837 G~i~~~g~~~~ 847 (1522)
T TIGR00957 837 GKISEMGSYQE 847 (1522)
T ss_pred CeEEeeCCHHH
Confidence 99999998653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-30 Score=280.07 Aligned_cols=184 Identities=24% Similarity=0.434 Sum_probs=160.3
Q ss_pred CCCCCCCcchhhcccce---eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 5 NDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 5 ~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
.+.+|+|||||+...=- .-+|.|++||.|+++.. .|+.+|.|||+-+||.. |+..|+.|+-.
T Consensus 295 Vg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~----------- 362 (497)
T COG5265 295 VGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRP----------- 362 (497)
T ss_pred EeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCc-----------
Confidence 47899999999986543 46899999999999764 46788999999999965 99999999621
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCc--CCccccchhhHHHHHhhC
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRG--ISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rG--LSGGeKrRvSIA~ell~~ 156 (1218)
. ..++|+.++++++..|.+++.+++.+ ||.||+ || |||||||||+|||.++++
T Consensus 363 -~----------at~eev~aaa~~aqi~~fi~~lP~gy-----------~t~Vge---rglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 363 -D----------ATAEEVGAAAEAAQIHDFIQSLPEGY-----------DTGVGE---RGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred -c----------ccHHHHHHHHHHhhhhHHHHhCchhh-----------hcccch---heeeccCchHHHHHHHHHHhcC
Confidence 1 13357888999999999999988877 999998 55 899999999999999999
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
| +||+|||+||+||+.++.+++.+|+++++ +++|++++ ||.+++-.+|.|+||++|++++.|+|.+++.
T Consensus 418 p-~il~~deatsaldt~te~~iq~~l~~~~~-~rttlvia---hrlsti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 418 P-PILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIA---HRLSTIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred C-CEEEEehhhhHhhhhHHHHHHHHHHHHhC-CCeEEEEe---ehhhhccCCceEEEeeCCEEEecCcHHHHHH
Confidence 9 69999999999999999999999999984 55666666 7788999999999999999999999999996
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=287.58 Aligned_cols=186 Identities=26% Similarity=0.347 Sum_probs=158.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+.. .++.++||+|+..+||.+||+||+.|..+.++.
T Consensus 35 llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-------- 106 (356)
T PRK11650 35 LVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM-------- 106 (356)
T ss_pred EECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC--------
Confidence 6899999999999999994 5799999999887542 246789999999999999999999998654321
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
++.+. ...++++++.+||++..|..+ +.|||||||||+|||+++.+| +
T Consensus 107 --~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P-~ 154 (356)
T PRK11650 107 --PKAEI------------------------EERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREP-A 154 (356)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCC-C
Confidence 11111 113578899999998888765 459999999999999999888 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
||+|||||||||+.+...+.+.|+++.++.|+|+|++.|++ .++..++|+|++|.+|+++..|+++++.+
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 99999999999999999999999999876688999988765 57899999999999999999999998753
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=268.20 Aligned_cols=190 Identities=26% Similarity=0.355 Sum_probs=158.5
Q ss_pred CCCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
.+.|++|||||||.+-..|. .+|+|+++|.++.+.. ..+.++||||+....+.+||+|-..+...=. ..
T Consensus 32 ~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~---~~-- 106 (258)
T COG1120 32 GILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPH---LG-- 106 (258)
T ss_pred EEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcc---cc--
Confidence 36799999999999999983 5799999999998754 3467899999998888999999998852210 00
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
.....+++ ....++..|+.+|+.+-++..+. .|||||||||-|||++..+
T Consensus 107 ~~~~~~~~-------------------------D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 107 LFGRPSKE-------------------------DEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQE 156 (258)
T ss_pred cccCCCHh-------------------------HHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcC
Confidence 00000111 01146788999999999998775 4999999999999999888
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
| +||+||||||.||-....++++.+++++++.|+|+|+++|.+. -....+|++++|.+|+++.+|++.+++
T Consensus 157 ~-~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 157 T-PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred C-CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhc
Confidence 8 7999999999999999999999999999988999999999654 678899999999999999999998777
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=285.82 Aligned_cols=186 Identities=20% Similarity=0.310 Sum_probs=159.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+.. .++.++||+|+..+||.+||+||+.|+.+.++.
T Consensus 35 l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-------- 106 (353)
T TIGR03265 35 LLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM-------- 106 (353)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC--------
Confidence 6799999999999999995 5799999999887532 356789999999999999999999998654321
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
++++. +..++++++.+||++..|..+ +.|||||||||+|||+++.+| +
T Consensus 107 --~~~~~------------------------~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P-~ 154 (353)
T TIGR03265 107 --GRAEV------------------------AERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSP-G 154 (353)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCC-C
Confidence 11111 113678899999999888765 469999999999999999988 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|+|||||||||..+...+.+.|+++.++.++|+|++.|.+ .++..++|+|++|++|+++++|+++++.+
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999877788998888866 48899999999999999999999988874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=282.85 Aligned_cols=185 Identities=21% Similarity=0.274 Sum_probs=155.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
+.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|+..+++.+||+||+.|..++.+.
T Consensus 36 IiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~--- 112 (343)
T TIGR02314 36 VIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT--- 112 (343)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCC---
Confidence 5799999999999999994 4799999999887543 245789999999999999999999997654321
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
++++. ...+.++++.+||.+..|... +.|||||||||+|||+++
T Consensus 113 -------~~~~~------------------------~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 113 -------PKDEI------------------------KRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALA 156 (343)
T ss_pred -------CHHHH------------------------HHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHH
Confidence 01111 113567899999999888765 469999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| +||+|||||||||+.+...+++.|++++++.|.|||++.|+ ...+.+.+|+|++|++|++++.|++.++.
T Consensus 157 ~~P-~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~-~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 157 SNP-KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE-MDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred hCC-CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 887 89999999999999999999999999987668999998776 44667889999999999999999998875
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=254.40 Aligned_cols=187 Identities=22% Similarity=0.336 Sum_probs=155.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
..|.+|+|||||.+...|. .+|+|.++|.++.... .|+..|++.|+-.||..|||.||+.|-.+-.+
T Consensus 39 iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~---- 114 (263)
T COG1127 39 ILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT---- 114 (263)
T ss_pred EECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc----
Confidence 4689999999999999984 5899999999998654 34568999999999999999999999544221
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCccc-ccceecCCcCCcCCccccchhhHHHHH
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDIC-ADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~-~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
++ ++++ ++ ..+..-|+..||... +| .+...||||+|||+++|||+
T Consensus 115 -~l----p~~~----------i~--------------~lv~~KL~~VGL~~~~~~-----~~PsELSGGM~KRvaLARAi 160 (263)
T COG1127 115 -KL----PESL----------IR--------------ELVLMKLELVGLRGAAAD-----LYPSELSGGMRKRVALARAI 160 (263)
T ss_pred -cC----CHHH----------HH--------------HHHHHHHHhcCCChhhhh-----hCchhhcchHHHHHHHHHHH
Confidence 11 1221 11 123344788899765 44 44577999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
..+| +|+|+|||||||||.++..+.+.++++.+.-|.|+++..|+ -++++..+|++++|.+||++.+||++++..
T Consensus 161 aldP-ell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHD-l~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 161 ALDP-ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD-LDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred hcCC-CEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECC-hHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9998 89999999999999999999999999998889898887664 668999999999999999999999999985
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=280.43 Aligned_cols=185 Identities=28% Similarity=0.350 Sum_probs=157.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc--ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV--PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~--~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.... .++.++||+|++.+++.+||+|+|.|.+++++..
T Consensus 38 llGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~------ 111 (306)
T PRK13537 38 LLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS------ 111 (306)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC------
Confidence 6899999999999999995 4799999999886432 3567899999999999999999999877654311
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
.++. ...++.+++.+||.+.+|+.++ .||||||||++||++++.+|
T Consensus 112 ----~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P- 157 (306)
T PRK13537 112 ----AAAA------------------------RALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDP- 157 (306)
T ss_pred ----HHHH------------------------HHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCC-
Confidence 1110 0124678999999999998875 59999999999999998887
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||+|||+.+...+++.|+++++ .|+||+++-|++ .++...+|+|++|++|++++.|+++++..
T Consensus 158 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 89999999999999999999999999975 589999997764 47888999999999999999999998875
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-29 Score=259.95 Aligned_cols=172 Identities=24% Similarity=0.343 Sum_probs=149.1
Q ss_pred CCCCCCCCCcchhhccccee---EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
++.|++|||||||.....|. .+|+|.++|.+++. ....++||.|++.++|=+||+||+.|+.+.++..
T Consensus 33 silGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~------- 103 (248)
T COG1116 33 AILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS------- 103 (248)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC--CCCCEEEEeccCcccchhhHHhhheehhhccccc-------
Confidence 57899999999999999994 67999999999854 3567899999999999999999999998876411
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
++|.+ ..+++.|+..||.+..|.. .+.|||||||||+|||+++.+| +
T Consensus 104 ---~~e~~------------------------~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVaiARAL~~~P-~ 150 (248)
T COG1116 104 ---KAEAR------------------------ERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVAIARALATRP-K 150 (248)
T ss_pred ---hHhHH------------------------HHHHHHHHHcCCcchhhcC-----ccccChHHHHHHHHHHHHhcCC-C
Confidence 12221 1357789999999999965 5679999999999999999888 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCC
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEG 217 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G 217 (1218)
||+||||-++||+.|+..+.+.|.++.++.++|+++..|- =.|.+.+.|||+||+++
T Consensus 151 lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHd-i~EAv~LsdRivvl~~~ 207 (248)
T COG1116 151 LLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD-VDEAVYLADRVVVLSNR 207 (248)
T ss_pred EEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC-HHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999998889999988774 56889999999999984
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-28 Score=282.31 Aligned_cols=186 Identities=22% Similarity=0.295 Sum_probs=157.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-------QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-------~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++...+. ++.++||+|+..+||.+||+||+.|..+..+.
T Consensus 24 l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~-- 101 (363)
T TIGR01186 24 IMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-- 101 (363)
T ss_pred EECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCC--
Confidence 6799999999999999984 67999999999876442 56789999999999999999999998665421
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
++++. ...+.++++.+||++..|..++ .|||||||||+|||++
T Consensus 102 --------~~~~~------------------------~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL 144 (363)
T TIGR01186 102 --------PEQER------------------------KEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARAL 144 (363)
T ss_pred --------CHHHH------------------------HHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHH
Confidence 01111 1135678999999888887664 4999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+.+| +||+|||||||||+.++..+.+.++++.+..++|||++.|.. .++..++|+|++|.+|++++.|+++++..
T Consensus 145 ~~~p-~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 145 AAEP-DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred hcCC-CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9888 799999999999999999999999999876689999887754 46789999999999999999999988763
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-29 Score=316.57 Aligned_cols=184 Identities=18% Similarity=0.286 Sum_probs=154.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ .|+.++||+|++.+|+. |+||||.++..
T Consensus 484 IvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~---------- 552 (686)
T TIGR03797 484 IVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP---------- 552 (686)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC----------
Confidence 5699999999999999994 4799999999998764 46789999999999875 99999998521
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++|+.++++.+..+.++..+ ++..||.||+.+ +.||||||||++|||+++.+|
T Consensus 553 -------------~~~e~i~~al~~a~l~~~i~~l-----------p~G~dt~ige~G-~~LSGGQrQRialARAll~~p 607 (686)
T TIGR03797 553 -------------LTLDEAWEAARMAGLAEDIRAM-----------PMGMHTVISEGG-GTLSGGQRQRLLIARALVRKP 607 (686)
T ss_pred -------------CCHHHHHHHHHHcCcHHHHHhc-----------cccccccccCCC-CCCCHHHHHHHHHHHHHhcCC
Confidence 0123466677777766665544 455699999863 679999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+.+.|+++ ++|+|++.|++ ++.+.+|+|++|++|+++++|+++++++
T Consensus 608 -~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 608 -RILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred -CEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 799999999999999999999999875 35777666654 6899999999999999999999999874
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-28 Score=281.86 Aligned_cols=186 Identities=24% Similarity=0.356 Sum_probs=158.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+... ++.++||+|+..+||.+||+||+.|..+.++..
T Consensus 37 llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~------- 109 (351)
T PRK11432 37 LLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVP------- 109 (351)
T ss_pred EECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCC-------
Confidence 6799999999999999994 57999999998875433 467899999999999999999999987654211
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
+++. +..++++++.+||.+..|... +.|||||||||+|||+|+.+| +
T Consensus 110 ---~~~~------------------------~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P-~ 156 (351)
T PRK11432 110 ---KEER------------------------KQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKP-K 156 (351)
T ss_pred ---HHHH------------------------HHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCC-C
Confidence 1111 113577899999998887664 469999999999999999988 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
||+|||||||||+.+..++.+.|+++.++.++|+|++.|.+ .++..++|+|++|++|+++..|+++++..
T Consensus 157 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 157 VLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999876688988887755 57889999999999999999999998753
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-28 Score=261.49 Aligned_cols=189 Identities=23% Similarity=0.358 Sum_probs=159.3
Q ss_pred CCCCCCCCCcchhhccccee---EEEEEEECCc---ccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCch
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGY---KLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRA 75 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~---~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~ 75 (1218)
-|+|++|||||||.+..-|. ..|.|.+||. |.+... ..+.+|||.|+-.+|+.|||.+|+.|+.+++. .
T Consensus 32 aLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~-~--- 107 (345)
T COG1118 32 ALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-E--- 107 (345)
T ss_pred EEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc-c---
Confidence 37899999999999999984 5799999999 666532 34678999999999999999999999998872 1
Q ss_pred hhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 76 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
.|. ..+. +..++++|+...|++.++- +...|||||||||++||++..
T Consensus 108 -~p~---~~~~------------------------r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 108 -RPS---EAEI------------------------RARVEELLRLVQLEGLADR-----YPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred -CCC---hhhH------------------------HHHHHHHHHHhcccchhhc-----CchhcChHHHHHHHHHHHhhc
Confidence 111 1111 1246788999999888775 467899999999999999999
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.| +||+||||.++||+.-..++-+.|+++-++.|.|++...| --.|+++++|+|++|++|+|...||++|+-+
T Consensus 155 eP-~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH-D~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 155 EP-KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH-DQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred CC-CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC-CHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 88 7999999999999999999999999988776777777655 5679999999999999999999999999875
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-29 Score=254.57 Aligned_cols=196 Identities=20% Similarity=0.287 Sum_probs=159.0
Q ss_pred CCCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
.+.|++|||||||.+-..| ..+|+|++||.++.... +|+.+||+.|+..+.|.+||-||+.....-+.+--
T Consensus 34 aiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~ 113 (258)
T COG3638 34 AIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTW 113 (258)
T ss_pred EEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHH
Confidence 4679999999999998887 45799999998887653 46778999999999999999999988643221000
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
..+..-.|++++. ..=+.|+.+|+.+.+-++.++ |||||+|||+|||+|
T Consensus 114 -~slfglfsk~dk~-------------------------~Al~aLervgi~~~A~qra~~-----LSGGQQQRVaIARaL 162 (258)
T COG3638 114 -RSLFGLFSKEDKA-------------------------QALDALERVGILDKAYQRAST-----LSGGQQQRVAIARAL 162 (258)
T ss_pred -HHHhCCCCHHHHH-------------------------HHHHHHHHcCcHHHHHHHhcc-----CCcchhHHHHHHHHH
Confidence 0011111222221 123458999999999998765 999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEF 231 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~y 231 (1218)
+.+| +|++-||||+.||+.++..||+.|++++++.|.|+|+.+||-- -.-+.||||+-|.+|+++|.||++++-+.
T Consensus 163 ~Q~p-kiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~~~ 238 (258)
T COG3638 163 VQQP-KIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELTDE 238 (258)
T ss_pred hcCC-CEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecCCcEEEeCChhhhhHH
Confidence 8888 9999999999999999999999999999999999999999843 34677999999999999999999987764
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-28 Score=245.37 Aligned_cols=185 Identities=23% Similarity=0.292 Sum_probs=160.5
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|+|.+||||||+.+...+ ..+|.|++||.+..+. ..|+.+|.++-+--++.-||+||||.|.+++.+
T Consensus 33 lLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~-------- 104 (245)
T COG4555 33 LLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG-------- 104 (245)
T ss_pred EEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhh--------
Confidence 679999999999998887 4589999999988743 346778888888889999999999999999864
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+++++-++ ..+++.+.|+|.+|.|+++|+ +|-|+||||+|||+++.+|
T Consensus 105 --l~~~~~ka------------------------ri~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARAlvh~P- 152 (245)
T COG4555 105 --LSRKEIKA------------------------RIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARALVHDP- 152 (245)
T ss_pred --hhhhHHHH------------------------HHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHHHhcCC-
Confidence 33444322 357789999999999999985 9999999999999998888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++|||||||||-.+...+.+.++++.. .|++||.+-| -.+|+-.++|+|+++++|++|+.|+...+..
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH-~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSH-IMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecc-cHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 89999999999999999999999998864 6899999965 7888888999999999999999999987764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-28 Score=323.52 Aligned_cols=191 Identities=22% Similarity=0.385 Sum_probs=151.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHHH
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEE 722 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 722 (1218)
+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~--~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP--SEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 4699999999999999999999999999999999999887 489999988 3899999998887 49999
Q ss_pred HHHHHHhhccCCCCChhhHHHHHH--HHHHHcCC-CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000937 723 SLFFSAWLRLAPQINSKTKADCVN--HVLKTIEL-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTG 799 (1218)
Q Consensus 723 ~l~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~l-~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsg 799 (1218)
|+.|+... ..+..++..+ .+.+.++. .+..++.+|..+ ..||||||||++||||++.+|++++|||||+|
T Consensus 506 NI~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g-~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 506 NIIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG-ITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred HHHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccCcC-CCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99986321 1111111111 11122222 122345566553 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 800 LDARAAAIVMRA-VKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 800 LD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
||+.++..+.+. ++++. +|+|+|++||+++ ....+|++++|. +|+++..|+.++
T Consensus 579 LD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~--~~~~ad~ii~l~-~g~i~~~g~~~~ 633 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLM-SNKTRILVTSKLE--HLKKADKILLLH-EGVCYFYGTFSE 633 (1490)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH--HHHhCCEEEEEE-CCEEEEEcCHHH
Confidence 999999999984 66664 4899999999985 456799999998 699999998653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=284.66 Aligned_cols=206 Identities=26% Similarity=0.357 Sum_probs=160.8
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|++..+. .+.+++|+|+++.+|+.+||+|+||||||||||+|+|...|. +|+|...+.
T Consensus 3 ~i~~~~ls~~~g--------------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~--~G~i~~~~~- 65 (530)
T COG0488 3 MITLENLSLAYG--------------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD--SGEVTRPKG- 65 (530)
T ss_pred eEEEeeeEEeeC--------------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC--CCeEeecCC-
Confidence 477889988873 468999999999999999999999999999999999988764 899976541
Q ss_pred CccccccceEEEeccCCCCCCCCCHHHHHHHHHhhc-------------cCCC--------------CChhhHHHHHHHH
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLR-------------LAPQ--------------INSKTKADCVNHV 748 (1218)
Q Consensus 696 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~~~~~ 748 (1218)
-.++|++|+....+..||.+.+.-+..-. .+.. ....+.+.+++.+
T Consensus 66 -------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~ 138 (530)
T COG0488 66 -------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEA 138 (530)
T ss_pred -------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHH
Confidence 24899999999999999999876542100 0000 0001112456777
Q ss_pred HHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 000937 749 LKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQ 828 (1218)
Q Consensus 749 l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 828 (1218)
+..+|+.+. ++.+ .+||||||.||+||++|+.+|++|+|||||++||..+..-+-+.|++. .| |+|+||||
T Consensus 139 L~gLg~~~~-~~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD 209 (530)
T COG0488 139 LLGLGFPDE-DRPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD 209 (530)
T ss_pred HhcCCCCcc-cCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC
Confidence 888888766 6665 479999999999999999999999999999999999999999999864 46 99999998
Q ss_pred CCHHHHHhhceEEEEecCCEEEEEcCC
Q 000937 829 PSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 829 ~~~~~~~~~d~~~~l~~~G~~~~~g~~ 855 (1218)
-. -+-+.|++++-++.+.-..|.|..
T Consensus 210 R~-FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 210 RY-FLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HH-HHHHHhhheEEecCCceeEecCCH
Confidence 42 344567888888753344566654
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=257.81 Aligned_cols=191 Identities=19% Similarity=0.300 Sum_probs=132.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHH-HHHhCCCCCCceeeEEEE------------CCEe-Ccccccc-ceEE
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLL-DVLAGRKTSGCFKGEIKV------------NGYP-KIQETFV-RVSG 706 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl-~~l~g~~~~~~~~G~i~~------------~g~~-~~~~~~~-~~~~ 706 (1218)
..++|+|+|+++++||+++|+||||||||||+ ..+.. .|++.+ .... ......+ ....
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 45799999999999999999999999999995 44431 121111 0000 0000111 1223
Q ss_pred EeccCCC--CCCCCCHHH---HHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHH
Q 000937 707 YCEQTDI--HSPHITIEE---SLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVSGLSTEQRKRLTI 780 (1218)
Q Consensus 707 ~v~q~~~--~~~~lTv~e---~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~LSgGerqRv~i 780 (1218)
+..|++. ..+..+|.. ...+...+. ......++ .+.++.+++.+ ..+... .+||||||||++|
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~l 148 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRL 148 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHH
Confidence 3333332 234455542 222211111 11112223 46788899875 345543 5899999999999
Q ss_pred HHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE------ecCCEEEEE
Q 000937 781 GVELVANP--SIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL------KTGGRIIYS 852 (1218)
Q Consensus 781 a~~L~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l------~~~G~~~~~ 852 (1218)
|++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|||++||+++ ..+.+|++++| . +|+++++
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~--~~~~~d~i~~l~~~~~~~-~G~iv~~ 225 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED--TIRAADHVIDIGPGAGVH-GGEIVAQ 225 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH--HHHhCCEEEEeCCCcccc-CCEEEec
Confidence 99999998 599999999999999999999999999878999999999975 35789999999 5 6899887
Q ss_pred c
Q 000937 853 G 853 (1218)
Q Consensus 853 g 853 (1218)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 6
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-28 Score=267.54 Aligned_cols=186 Identities=24% Similarity=0.294 Sum_probs=152.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+.. .++.++||+|++.+++.+||+|++.+.......
T Consensus 31 l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~--- 107 (235)
T cd03261 31 IIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTR--- 107 (235)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccC---
Confidence 6799999999999999995 4799999999876432 345689999999999999999999987542110
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
.+.++. ...++.+++.+||.+..++.++ .|||||||||+|||+++
T Consensus 108 ------~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 108 ------LSEEEI------------------------REIVLEKLEAVGLRGAEDLYPA-----ELSGGMKKRVALARALA 152 (235)
T ss_pred ------CCHHHH------------------------HHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHh
Confidence 001110 0124667899999887777664 59999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| +|++|||||+|||+.+...+++.|++++++.++|||++-|.+. ++...+|+|++|.+|++++.|+++++.
T Consensus 153 ~~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 153 LDP-ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred cCC-CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 887 7999999999999999999999999998655789888877654 677889999999999999999988764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-28 Score=280.89 Aligned_cols=186 Identities=20% Similarity=0.316 Sum_probs=157.1
Q ss_pred CCCCCCCCcchhhccccee---EE--EEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VT--GEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~--G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|||||||.+...|. .+ |+|.+||.++.+.. .++.++||+|+..+||.+||+||+.|+.+.++.
T Consensus 36 llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~------ 109 (362)
T TIGR03258 36 LIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM------ 109 (362)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC------
Confidence 6799999999999999994 46 99999999886533 245689999999999999999999998764321
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
++++. +..++++++.+||++..|..+ +.|||||||||+|||+|+.+|
T Consensus 110 ----~~~~~------------------------~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvaLARAL~~~P 156 (362)
T TIGR03258 110 ----PKADI------------------------AERVADALKLVGLGDAAAHLP-----AQLSGGMQQRIAIARAIAIEP 156 (362)
T ss_pred ----CHHHH------------------------HHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 01111 113578899999999888876 459999999999999999888
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhc-CCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHIT-DATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~-g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||||||+.+..++.+.|+++.++. |+|+|++.|. ..++..++|+|++|.+|+++.+|+++++..
T Consensus 157 -~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd-~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 157 -DVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD-QDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred -CEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 8999999999999999999999999998764 7888888775 457899999999999999999999998864
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-28 Score=277.71 Aligned_cols=185 Identities=26% Similarity=0.359 Sum_probs=156.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|.++|.++... ..++.++||+|++.+++.+||+|+|.|.+++++..
T Consensus 24 l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~------ 97 (302)
T TIGR01188 24 FLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP------ 97 (302)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC------
Confidence 6799999999999999995 479999999987542 23456899999999999999999999987654310
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
..+. ...++++++.+||.+..|+.++ .|||||||||+||++++.+|
T Consensus 98 ----~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p- 143 (302)
T TIGR01188 98 ----KDEA------------------------EERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQP- 143 (302)
T ss_pred ----HHHH------------------------HHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 1110 0125678999999998888764 59999999999999998887
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||+|||+.+...+++.|+++++ .|+|||++-|++ .++...+|+|++|.+|++++.|+++++..
T Consensus 144 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 144 DVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 89999999999999999999999999975 488999987764 47788999999999999999999998765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-28 Score=260.63 Aligned_cols=186 Identities=24% Similarity=0.333 Sum_probs=155.9
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccC----CccccceEEeecccc-ccCCCCCHHHHHHHHhhccCCCCch
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLE----EFVPQKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRA 75 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~----~~~~~~~~~yV~Q~D-~l~~~LTVrEtL~Faa~lk~~~~~~ 75 (1218)
+.|++|||||||.+...|. .+|.|.++|.+.. ....++.+|||.|++ ..+-.-||.|-+.|..+..+.
T Consensus 35 i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~---- 110 (235)
T COG1122 35 LIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL---- 110 (235)
T ss_pred EECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCC----
Confidence 5689999999999999994 5699999999876 234578899999995 566677999999998776542
Q ss_pred hhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 76 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
++++. +.+++.+++..||.+.+|... ..|||||||||+||..+..
T Consensus 111 ------~~~e~------------------------~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqkqRvaIA~vLa~ 155 (235)
T COG1122 111 ------PREEI------------------------EERVAEALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAM 155 (235)
T ss_pred ------CHHHH------------------------HHHHHHHHHHcCchhhccCCc-----cccCCcceeeHHhhHHHHc
Confidence 11111 124788899999999988764 4599999999999988888
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+| +||+|||||||||+....++++.++++...+|.|+|++-| -...+...+|++++|++|+++++|++.++.+
T Consensus 156 ~P-~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tH-d~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 156 GP-EILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTH-DLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred CC-CEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeC-cHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 87 9999999999999999999999999999877788888766 4556777799999999999999999877664
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-28 Score=279.70 Aligned_cols=186 Identities=23% Similarity=0.326 Sum_probs=157.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.... .++.++||+|+..+||.+||+||+.|+.+.++.
T Consensus 45 LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-------- 116 (375)
T PRK09452 45 LLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT-------- 116 (375)
T ss_pred EECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC--------
Confidence 6899999999999999994 5799999999886533 246789999999999999999999998654321
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
++++. +..++++++.+||++..|..+ +.|||||||||+|||+++.+| +
T Consensus 117 --~~~~~------------------------~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRVaLARaL~~~P-~ 164 (375)
T PRK09452 117 --PAAEI------------------------TPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRVAIARAVVNKP-K 164 (375)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCC-C
Confidence 01111 113577899999999888765 469999999999999999988 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
||+|||||||||..+...+.+.|+++.++.|+|+|++.|. ..++..++|+|++|.+|+++..|+++++.+
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd-~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD-QEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999988778888888775 457899999999999999999999988764
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-28 Score=313.02 Aligned_cols=187 Identities=25% Similarity=0.385 Sum_probs=155.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.|+++.+ +|+.++||+|++.+|+. ||||||.+..+-.
T Consensus 505 IvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~-------- 575 (708)
T TIGR01193 505 IVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKEN-------- 575 (708)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCCC--------
Confidence 5699999999999999984 5799999999988754 46789999999999875 9999999853100
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++++.++++.+.+++++.++ ++..||.||+. .+.||||||||++|||+++.+|
T Consensus 576 -------------~~~~~i~~a~~~a~l~~~i~~l-----------p~gldt~i~e~-G~~LSgGQrQRialARall~~p 630 (708)
T TIGR01193 576 -------------VSQDEIWAACEIAEIKDDIENM-----------PLGYQTELSEE-GSSISGGQKQRIALARALLTDS 630 (708)
T ss_pred -------------CCHHHHHHHHHHhCCHHHHHhc-----------ccccCcEecCC-CCCCCHHHHHHHHHHHHHhhCC
Confidence 1123566777777776666544 45569999985 4679999999999999999998
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+++.|+++ .++|+|++.|++ ++...+|+|++|++|++++.|+++++++
T Consensus 631 -~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 631 -KVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred -CEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 799999999999999999999999874 357777766665 5889999999999999999999999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-28 Score=279.45 Aligned_cols=186 Identities=20% Similarity=0.286 Sum_probs=157.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|+..+||.+||+||+.|+.+.+..
T Consensus 50 llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-------- 121 (377)
T PRK11607 50 LLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL-------- 121 (377)
T ss_pred EECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC--------
Confidence 6899999999999999995 5899999999886532 356789999999999999999999998654321
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
++.+. ...++++++.+||.+..|..+ +.|||||||||+|||+++.+| +
T Consensus 122 --~~~~~------------------------~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVaLARAL~~~P-~ 169 (377)
T PRK11607 122 --PKAEI------------------------ASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRP-K 169 (377)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC-C
Confidence 01111 113577899999998877665 469999999999999999888 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
||+|||||||||..+...+.+.|+++.++.|.|+|++-|.+ .++..++|+|++|++|+++..|+++++.+
T Consensus 170 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 99999999999999999999999998876788988887754 47899999999999999999999998764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-28 Score=305.24 Aligned_cols=188 Identities=23% Similarity=0.364 Sum_probs=154.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ +++.++||+|++.+|+ .||||||.++.. +
T Consensus 374 IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~----~----- 443 (582)
T PRK11176 374 LVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYART----E----- 443 (582)
T ss_pred EECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCCC----C-----
Confidence 5689999999999999995 4699999999988754 4677899999999997 599999988521 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
. ..++|++.+++.+..++++.+ |++..||.+|+. .+.||||||||++|||+++.+|
T Consensus 444 --~----------~~~~~i~~al~~~~l~~~i~~-----------lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~ 499 (582)
T PRK11176 444 --Q----------YSREQIEEAARMAYAMDFINK-----------MDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_pred --C----------CCHHHHHHHHHHhCcHHHHHh-----------cccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCC
Confidence 0 012346666666666555544 455669999985 3669999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+.+.|+++++ ++|+|+.-|++ ++.+.+|+|++|++|++++.|+++++++
T Consensus 500 -~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 500 -PILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred -CEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 79999999999999999999999998753 56777666665 6899999999999999999999999985
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-28 Score=304.79 Aligned_cols=186 Identities=20% Similarity=0.310 Sum_probs=155.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ +++.++||+|++.+|+. |++|||.++..
T Consensus 372 IvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~---------- 440 (592)
T PRK10790 372 LVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD---------- 440 (592)
T ss_pred EECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC----------
Confidence 4689999999999999995 4699999999988654 46789999999999986 99999999521
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
..+++++++++++..+.++..+ ++..||.||+. ...||||||||++|||+++.+|
T Consensus 441 -------------~~d~~i~~a~~~~gl~~~i~~l-----------p~Gldt~i~e~-g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 441 -------------ISEEQVWQALETVQLAELARSL-----------PDGLYTPLGEQ-GNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred -------------CCHHHHHHHHHHcCcHHHHHhc-----------cccccccccCC-CCCCCHHHHHHHHHHHHHHhCC
Confidence 0123466677777666555543 45569999984 3569999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++||||||+||+.++..+.+.|+++++ ++|+|+..|++ +....+|+|++|++|++++.|+++++++
T Consensus 496 -~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 496 -QILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred -CEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 79999999999999999999999998763 56777776765 6888999999999999999999999984
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-28 Score=243.83 Aligned_cols=186 Identities=23% Similarity=0.334 Sum_probs=149.8
Q ss_pred CCCCCCCCcchhhcccc--------eeEEEEEEECCcccCCc-----cccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000937 4 LNDRIGFGLSVISWFCT--------GLVTGEVSYNGYKLEEF-----VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQG 70 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~--------g~~~G~V~~nG~~~~~~-----~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~ 70 (1218)
|.|++||||||+.+-.. -+++|+|.++|.++-+. .+|+.+|.|.|.+.-|| +|+.||+.|..++.+
T Consensus 38 lIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g 116 (253)
T COG1117 38 LIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG 116 (253)
T ss_pred EECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc
Confidence 67999999999988654 26899999999998764 25788999999999999 899999999999886
Q ss_pred CCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHH
Q 000937 71 VGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 71 ~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
... . + .++-++...+.|..|+..++.. | ....||||||+||++||
T Consensus 117 ~~~-~---------~------ldeiVe~sLk~AaLWdEVKDrL--------------~-----~sa~~LSGGQQQRLcIA 161 (253)
T COG1117 117 IKD-K---------E------LDEIVESSLKKAALWDEVKDRL--------------H-----KSALGLSGGQQQRLCIA 161 (253)
T ss_pred cch-H---------H------HHHHHHHHHHHhHhHHHhHHHh--------------h-----CCccCCChhHHHHHHHH
Confidence 432 0 1 0122455666666666555431 1 12357999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
|++...| +||+||||||+|||.++..|=+.+.++.+ .-|||+..| -.....+-.|+...+..|++|++|+.+++.
T Consensus 162 RalAv~P-eVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTH-nmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 162 RALAVKP-EVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTH-NMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHhcCC-cEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeC-CHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9998888 89999999999999999999999999974 457777656 455678889999999999999999998765
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-28 Score=277.11 Aligned_cols=185 Identities=22% Similarity=0.289 Sum_probs=155.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|++||.++.... .++.++||+|+..+++.+||+||+.|.....+.
T Consensus 36 iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~--- 112 (343)
T PRK11153 36 VIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT--- 112 (343)
T ss_pred EECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC---
Confidence 6799999999999999995 5799999999886532 245689999999999999999999997654321
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
+.++. ...++++++.+||.+..|+.+ +.|||||||||+|||+++
T Consensus 113 -------~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 113 -------PKAEI------------------------KARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALA 156 (343)
T ss_pred -------CHHHH------------------------HHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHH
Confidence 01110 012567899999998888765 459999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| +||+|||||+|||+.+...+++.|+++++..|+|+|++.|++. ++...+|+|++|++|++++.|+++++.
T Consensus 157 ~~p-~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 157 SNP-KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred cCC-CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 887 7999999999999999999999999998766889999888654 677889999999999999999998775
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-28 Score=279.42 Aligned_cols=186 Identities=20% Similarity=0.331 Sum_probs=156.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+.. .++.++||+|+..++|.+||+||+.|..+.++.
T Consensus 34 l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~-------- 105 (369)
T PRK11000 34 FVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA-------- 105 (369)
T ss_pred EECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCC--------
Confidence 6899999999999999995 4799999999886532 245689999999999999999999997654321
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
+.++. ...++++++.+||++..|..+ +.|||||||||+|||+++.+| +
T Consensus 106 --~~~~~------------------------~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P-~ 153 (369)
T PRK11000 106 --KKEEI------------------------NQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEP-S 153 (369)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCC-C
Confidence 01111 113577899999998888766 459999999999999999888 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
||+|||||||||+.+...+.+.|+++.++.|+|+|++-|++ .++..++|+|++|.+|++++.|+++++..
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999876688988887765 47889999999999999999999988754
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=276.17 Aligned_cols=190 Identities=21% Similarity=0.306 Sum_probs=156.6
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|++||.++..... ++.++||+|+..++|.+||+||+.|..+.+....
T Consensus 33 llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~------ 106 (353)
T PRK10851 33 LLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE------ 106 (353)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc------
Confidence 6799999999999999994 57999999998865332 3568999999999999999999999865421000
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
..++++. ...++++++.+||++..|..+ +.|||||||||+|||+++.+| +
T Consensus 107 ~~~~~~~------------------------~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P-~ 156 (353)
T PRK10851 107 RPNAAAI------------------------KAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEP-Q 156 (353)
T ss_pred CCCHHHH------------------------HHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCC-C
Confidence 0001111 113577899999998888765 459999999999999999888 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|+|||||||||+.+...+.+.|+++.++.++|+|++.|. ..++..++|+|++|++|++++.|+++++..
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd-~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD-QEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999987668888887664 467899999999999999999999988863
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-28 Score=311.33 Aligned_cols=185 Identities=28% Similarity=0.376 Sum_probs=153.9
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.|+++.+ +|+.++||+|++.+|+ .||||||.++.. +
T Consensus 510 IvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~~----~----- 579 (710)
T TIGR03796 510 LVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWDP----T----- 579 (710)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCCC----C-----
Confidence 5699999999999999994 5799999999998754 4778999999999996 599999987421 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++++.++++.+..++++.++ ++..||.||+. ++.||||||||++|||+++.+|
T Consensus 580 -------------~~~~~i~~al~~~~l~~~i~~l-----------p~gl~t~i~e~-G~~LSGGQrQRiaLARall~~p 634 (710)
T TIGR03796 580 -------------IPDADLVRACKDAAIHDVITSR-----------PGGYDAELAEG-GANLSGGQRQRLEIARALVRNP 634 (710)
T ss_pred -------------CCHHHHHHHHHHhCCHHHHHhC-----------cCcccceeccC-CCCCCHHHHHHHHHHHHHhhCC
Confidence 1123466677777666655543 45569999976 4679999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+.+.|++ .++|+|++-|++ ++...+|+|++|++|+++++|+++++++
T Consensus 635 -~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 635 -SILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred -CEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 79999999999999999999999986 367777776654 6889999999999999999999999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=297.50 Aligned_cols=216 Identities=18% Similarity=0.209 Sum_probs=148.4
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-CceeeEEEECC
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTS-GCFKGEIKVNG 693 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~-~~~~G~i~~~g 693 (1218)
-.|.++|+++++. .+.+|+|+|++|++||.+||+|||||||||||++|+|+... -+.+|+|.+.+
T Consensus 176 ~~I~i~nls~~y~--------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~ 241 (718)
T PLN03073 176 KDIHMENFSISVG--------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVE 241 (718)
T ss_pred eeEEEceEEEEeC--------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEe
Confidence 4689999999883 24699999999999999999999999999999999996311 12367776544
Q ss_pred EeCccc-----------------cccceEEEeccCCCCCCCCCHHHHHHHH---------------HhhccCCCCChhhH
Q 000937 694 YPKIQE-----------------TFVRVSGYCEQTDIHSPHITIEESLFFS---------------AWLRLAPQINSKTK 741 (1218)
Q Consensus 694 ~~~~~~-----------------~~~~~~~~v~q~~~~~~~lTv~e~l~~~---------------~~~~~~~~~~~~~~ 741 (1218)
+..... ..++.+++++|++.+... ++.++.... ..+..-........
T Consensus 242 Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (718)
T PLN03073 242 QEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTA 320 (718)
T ss_pred ccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchH
Confidence 321000 001224555554322110 111110000 00000000001123
Q ss_pred HHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 000937 742 ADCVNHVLKTIELD-GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGR 820 (1218)
Q Consensus 742 ~~~~~~~l~~l~l~-~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~ 820 (1218)
++++.++++.+|+. +..++.+ .+|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ |.
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~ 392 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PK 392 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CC
Confidence 44566777888885 3345443 479999999999999999999999999999999999999999999886 68
Q ss_pred EEEEEecCCCHHHHHhhceEEEEecCCEEE-EEcCC
Q 000937 821 TIVCTIHQPSIDIFESFDELILLKTGGRII-YSGPL 855 (1218)
Q Consensus 821 tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~-~~g~~ 855 (1218)
|||+++|+.. .+.+.||++++|. +|++. |.|+.
T Consensus 393 tviivsHd~~-~l~~~~d~i~~l~-~g~i~~~~g~~ 426 (718)
T PLN03073 393 TFIVVSHARE-FLNTVVTDILHLH-GQKLVTYKGDY 426 (718)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCCH
Confidence 9999999974 4566799999998 58886 56654
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-28 Score=309.05 Aligned_cols=187 Identities=24% Similarity=0.383 Sum_probs=156.9
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.|+++.+ +|+.++||+|++.+|+. ||+|||.++..
T Consensus 496 IvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~---------- 564 (694)
T TIGR03375 496 IIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP---------- 564 (694)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC----------
Confidence 5699999999999999984 5799999999998764 46789999999999975 99999988521
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
+ .+++|+.++++.+..++++..+ ++..||.||+. ...||||||||++|||+++.+|
T Consensus 565 --~----------~~~~~i~~a~~~~~l~~~i~~l-----------p~gl~T~i~e~-G~~LSgGQrQRlalARall~~p 620 (694)
T TIGR03375 565 --Y----------ADDEEILRAAELAGVTEFVRRH-----------PDGLDMQIGER-GRSLSGGQRQAVALARALLRDP 620 (694)
T ss_pred --C----------CCHHHHHHHHHHcChHHHHHhC-----------cccccceecCC-CCCCCHHHHHHHHHHHHHhcCC
Confidence 0 1123567777777777666544 45569999985 4569999999999999999888
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++||||||+||+.++..+++.|+++.+ ++|+|++.|++ ++.+.+|+|++|++|+++++|+|+++++
T Consensus 621 -~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl--~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 621 -PILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT--SLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 79999999999999999999999998763 56777766665 5889999999999999999999999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-28 Score=301.63 Aligned_cols=186 Identities=26% Similarity=0.400 Sum_probs=154.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ +|+.++||+|++.+|+. |++||+.++..-
T Consensus 371 ivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~--------- 440 (574)
T PRK11160 371 LLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAPN--------- 440 (574)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCCc---------
Confidence 5689999999999999984 5799999999988764 46678999999988874 999999985310
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++++.++++.+..+.++.+ + +..||.||+. .+.||||||||++|||+++.+|
T Consensus 441 -------------~~~~~i~~al~~~~l~~~i~~-p-----------~GldT~vge~-g~~LSgGqrqRialARall~~~ 494 (574)
T PRK11160 441 -------------ASDEALIEVLQQVGLEKLLED-D-----------KGLNAWLGEG-GRQLSGGEQRRLGIARALLHDA 494 (574)
T ss_pred -------------cCHHHHHHHHHHcCCHHHHcC-c-----------cccCchhcCC-CCCCCHHHHHHHHHHHHHhcCC
Confidence 012345666666666655554 3 4459999985 4569999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+.+.|+++. .++|+|++.|+++ +...+|+|++|++|++++.|+|+++++
T Consensus 495 -~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 495 -PLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLT--GLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred -CEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChh--HHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 7999999999999999999999999885 3678877777764 678899999999999999999999985
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-28 Score=270.56 Aligned_cols=188 Identities=24% Similarity=0.351 Sum_probs=162.9
Q ss_pred CCCCCCCCCcchhhcccce---eEEEEEEECCcccCCccc-cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVP-QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~~-~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
.|+|++||||||+.+...| ..+|+|.+||.+++..-. +|.+++|.|+-.|||+|||+||+.|..+++...
T Consensus 35 ~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~------ 108 (352)
T COG3842 35 TLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKL------ 108 (352)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCC------
Confidence 4789999999999999998 467999999999997643 678999999999999999999999998754211
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
.+++. +.++++.++.++|++-++-+. ..|||||+|||++||+|+..|
T Consensus 109 ---~~~~i------------------------~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQqQRVALARAL~~~P- 155 (352)
T COG3842 109 ---KKAEI------------------------KARVEEALELVGLEGFADRKP-----HQLSGGQQQRVALARALVPEP- 155 (352)
T ss_pred ---CHHHH------------------------HHHHHHHHHHcCchhhhhhCh-----hhhChHHHHHHHHHHHhhcCc-
Confidence 01111 124788899999999877654 569999999999999999888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||-|+||..-..++...|+++.++.|.|.|...| .-.|...+.|||+||++|++...|+++|+-.
T Consensus 156 ~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTH-DqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 156 KVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTH-DQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred chhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEEC-CHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 8999999999999999999999999999989999888766 5679999999999999999999999998874
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=253.61 Aligned_cols=187 Identities=25% Similarity=0.373 Sum_probs=154.5
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCccccceEEeeccc---cccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVPQKLSAYVSQY---DLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~~~~~~~yV~Q~---D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.|..-| ..+|+|.++|.+.+....+..+|||||. |.-|| +||+|.+....--+...
T Consensus 35 iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~----- 108 (254)
T COG1121 35 LIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGW----- 108 (254)
T ss_pred EECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccc-----
Confidence 679999999999999999 4689999999998866555689999993 67788 59999998863222110
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
....++++ ...+++.|+..|+.+.+|-.||+ |||||+|||-|||+|+.+|
T Consensus 109 ~~~~~~~d-------------------------~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p 158 (254)
T COG1121 109 FRRLNKKD-------------------------KEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNP 158 (254)
T ss_pred cccccHHH-------------------------HHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCC
Confidence 00111111 12478899999999999999986 9999999999999998887
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||+|+|+.++..+.+.|+++.++ |+||+++-| --..+.+.||+|+.|+ ++++++|+++++..
T Consensus 159 -~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtH-DL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 159 -DLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTH-DLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred -CEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeC-CcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 899999999999999999999999999986 999999755 5557889999999996 67889999988774
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=314.96 Aligned_cols=189 Identities=26% Similarity=0.365 Sum_probs=147.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCccccccceEEEeccCCCCCCCCCHH
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIE 721 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 721 (1218)
.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++ +.++|++|++.++ +.||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~--~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI--SEGRVWAE----------RSIAYVPQQAWIM-NATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEEC----------CeEEEEeCCCccC-CCcHH
Confidence 35699999999999999999999999999999999998876 48999763 4589999998876 57999
Q ss_pred HHHHHHHhhccCCCCChhhHH-----HHHHHHHHHc--CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000937 722 ESLFFSAWLRLAPQINSKTKA-----DCVNHVLKTI--ELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMD 794 (1218)
Q Consensus 722 e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllD 794 (1218)
||+.|+.. ...+... ...++.++.+ |+ ++.+|.. ...|||||||||+|||||+.+|++++||
T Consensus 739 enI~~~~~------~~~~~~~~~~~~~~l~~~l~~l~~g~----~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illLD 807 (1560)
T PTZ00243 739 GNILFFDE------EDAARLADAVRVSQLEADLAQLGGGL----ETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLLD 807 (1560)
T ss_pred HHHHcCCh------hhHHHHHHHHHHhhhHHHHHHhhccc----hHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99987421 0111101 1122233333 22 3344443 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 795 EPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 795 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
|||++||+.++..+++.+.....+|+|+|++||+++ ..+.+|++++|. +|++++.|+.++
T Consensus 808 EP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~-~G~i~~~G~~~~ 867 (1560)
T PTZ00243 808 DPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALG-DGRVEFSGSSAD 867 (1560)
T ss_pred CccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEE-CCEEEEecCHHH
Confidence 999999999999888754322235899999999874 467899999998 699999998643
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-28 Score=275.54 Aligned_cols=187 Identities=24% Similarity=0.357 Sum_probs=150.7
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.||+||||||+.....| .-+|+|++||.++...+ ++..+++++|...+|.+ |+|+||+.|..-
T Consensus 369 IlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~--------- 438 (573)
T COG4987 369 ILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPD--------- 438 (573)
T ss_pred EECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCC---------
Confidence 579999999999999998 46799999999988654 35678899998877765 999999997321
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++|+.++.+++--+.+..+ .++..||.+|+. ++++|||||||++|||.++.+-
T Consensus 439 -------------AsDEel~~aL~qvgL~~l~~~-----------~p~gl~t~lge~-G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 439 -------------ASDEELWAALQQVGLEKLLES-----------APDGLNTWLGEG-GRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred -------------CCHHHHHHHHHHcCHHHHHHh-----------ChhhhhchhccC-CCcCCchHHHHHHHHHHHHcCC
Confidence 122344444444433332222 233559999986 4779999999999999999877
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++++|||||.|||+.|+.++++.+.+.++ ++|+++..|+-+ =.+.||+|+||.+||+++.|.+.+++.
T Consensus 494 -pl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 494 -PLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred -CeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 69999999999999999999999998764 788888876544 678999999999999999999999985
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=261.18 Aligned_cols=189 Identities=23% Similarity=0.326 Sum_probs=152.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|++||.++..... ++.++||+|++.+++.+||+|++.|+.........
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~----- 107 (239)
T cd03296 33 LLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSER----- 107 (239)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhcccccc-----
Confidence 6799999999999999995 57999999998764322 34689999999999999999999987543211000
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
....+. ...++.+++.+||.+..+..++ .|||||||||+|||+++.+| +
T Consensus 108 -~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p-~ 156 (239)
T cd03296 108 -PPEAEI------------------------RAKVHELLKLVQLDWLADRYPA-----QLSGGQRQRVALARALAVEP-K 156 (239)
T ss_pred -CCHHHH------------------------HHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCC-C
Confidence 000000 0124667899999887777654 59999999999999999888 7
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
||+|||||+|||+.+...+.+.|++++++.|+|+|++-|++ .++...+|++++|.+|++++.|+++++.
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999875588999988876 4577889999999999999999988764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=238.74 Aligned_cols=134 Identities=33% Similarity=0.564 Sum_probs=118.5
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCCCHHH
Q 000937 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIEE 722 (1218)
Q Consensus 646 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e 722 (1218)
|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999998876 48999999998754 345678999999999999999999
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000937 723 SLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 723 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~~p~llllDEPts 798 (1218)
+ ...++++++++.+++.+..++.++.+ ...||+|||||++||++|+.+|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 8 12345788999999988888877554 36899999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-28 Score=307.84 Aligned_cols=185 Identities=24% Similarity=0.368 Sum_probs=152.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.|+++.+ .|+.++||+|++.+|+ .||||||.+...-
T Consensus 512 IvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~~--------- 581 (711)
T TIGR00958 512 LVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLTD--------- 581 (711)
T ss_pred EECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCCC---------
Confidence 5699999999999999984 4799999999998754 4567899999999887 5999999985210
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++++.++++.+.++.++.++ ++..||.+|+. .+.||||||||++|||+++.+|
T Consensus 582 -------------~~~e~i~~al~~a~l~~~i~~l-----------p~GldT~ige~-G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 582 -------------TPDEEIMAAAKAANAHDFIMEF-----------PNGYDTEVGEK-GSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred -------------CCHHHHHHHHHHcCCHHHHHhC-----------CCccCCcccCC-CCcCCHHHHHHHHHHHHHhcCC
Confidence 0123566777777776666543 45569999975 4669999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+.+ ... ..++|+|+..|++ ++.+.+|+|++|++|++++.|+|+++++
T Consensus 637 -~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIiItHrl--~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 637 -RVLILDEATSALDAECEQLLQE-SRS---RASRTVLLIAHRL--STVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred -CEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEEEeccH--HHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 7999999999999999999888 222 2467877777665 5889999999999999999999999985
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=271.92 Aligned_cols=186 Identities=24% Similarity=0.320 Sum_probs=155.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|+..++|.+||+||+.|..+.++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~-------- 72 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKV-------- 72 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCC--------
Confidence 5799999999999999994 4799999999876432 245689999999999999999999997654321
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
+.++. +..++++++.+||.+..|..+ +.|||||||||+|||+++.+| +
T Consensus 73 --~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p-~ 120 (325)
T TIGR01187 73 --PRAEI------------------------KPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKP-K 120 (325)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCC-C
Confidence 00110 012567899999998888765 459999999999999999888 7
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|+|||||+|||+.+...+.+.|+++.++.|+|+|++.|.+ .++..++|+|++|.+|++++.|+++++.+
T Consensus 121 lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999876688999887765 47889999999999999999999988764
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=254.13 Aligned_cols=197 Identities=26% Similarity=0.352 Sum_probs=149.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh--------CCC--CCC---------ceeeEEEECCEeCcccc---
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLA--------GRK--TSG---------CFKGEIKVNGYPKIQET--- 700 (1218)
Q Consensus 643 ~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~--------g~~--~~~---------~~~G~i~~~g~~~~~~~--- 700 (1218)
..-|+|||..|+.|++++|.|+||||||||++.+. +.. .++ ...--|.++..|+....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 35699999999999999999999999999998552 110 010 01124677766542100
Q ss_pred -------c----------------c---ceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCC
Q 000937 701 -------F----------------V---RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIEL 754 (1218)
Q Consensus 701 -------~----------------~---~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 754 (1218)
+ . ..+.|..++......+||.|++.|...+. ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 0 0 01345555555567899999998865432 12346678999999
Q ss_pred Ccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Q 000937 755 DGI-KESLVGIPGVSGLSTEQRKRLTIGVELVAN---PSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830 (1218)
Q Consensus 755 ~~~-~~~~~~~~~~~~LSgGerqRv~ia~~L~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 830 (1218)
... .+.. ..+||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|+++
T Consensus 159 ~~l~l~~~-----~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCc-----cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 763 4444 358999999999999999996 7999999999999999999999999999888999999999874
Q ss_pred HHHHHhhceEEEEe-----cCCEEEEEcCC
Q 000937 831 IDIFESFDELILLK-----TGGRIIYSGPL 855 (1218)
Q Consensus 831 ~~~~~~~d~~~~l~-----~~G~~~~~g~~ 855 (1218)
..+.+|+++.|. ++|++++.|++
T Consensus 234 --~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 --VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred --HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 457899999993 47999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-27 Score=258.11 Aligned_cols=182 Identities=31% Similarity=0.517 Sum_probs=149.2
Q ss_pred CCCCCCCCcchhhccccee------EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL------VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~------~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.....++.++||+|++.+++.+||+||+.|++........
T Consensus 38 l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~--- 114 (226)
T cd03234 38 ILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKS--- 114 (226)
T ss_pred EECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhccccc---
Confidence 6799999999999999984 4799999999876544566789999999999999999999997654321100
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHH-HHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDY-NLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~-vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
. .... ....+. .++.+++.+..|+.+ +.|||||||||+|||+++.+
T Consensus 115 ~----~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 115 S----DAIR------------------------KKRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred c----hHHH------------------------HHHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHHHHhC
Confidence 0 0000 001233 688888887777654 46999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
| +||+|||||+|||+.+...+.+.++++++ .++|+|++.|++..++.+.+|++++|.+|+++++|
T Consensus 162 p-~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 162 P-KVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred C-CEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 7 89999999999999999999999999875 47899999999988999999999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-27 Score=271.38 Aligned_cols=185 Identities=28% Similarity=0.343 Sum_probs=156.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|.++|.++.+. ..++.++||+|+..+++.+||+|++.|.+.+.+..
T Consensus 72 LlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~------ 145 (340)
T PRK13536 72 LLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS------ 145 (340)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC------
Confidence 6799999999999999994 579999999987643 23567899999999999999999999866543210
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
..+. ...++.+++.+||.+..|+.++ .||||||||++||++++.+|
T Consensus 146 ----~~~~------------------------~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~P- 191 (340)
T PRK13536 146 ----TREI------------------------EAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALINDP- 191 (340)
T ss_pred ----HHHH------------------------HHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 1110 0124567899999999998875 59999999999999998888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||+|||+.+...+++.|+++++ .|+|||++-|.. .++-+.+|+|++|++|+++++|+++++..
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 89999999999999999999999999975 589999997754 57889999999999999999999999875
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-27 Score=264.25 Aligned_cols=186 Identities=25% Similarity=0.327 Sum_probs=153.6
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-------QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-------~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+... ++.++||+|++.+++.+||+|++.+....++..
T Consensus 55 l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~- 133 (269)
T cd03294 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP- 133 (269)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCC-
Confidence 6799999999999999995 47999999998764321 245899999999999999999999875433100
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
..+. ...++++++.+||.+..|+.++ .|||||||||+|||++
T Consensus 134 ---------~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral 175 (269)
T cd03294 134 ---------RAER------------------------EERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARAL 175 (269)
T ss_pred ---------HHHH------------------------HHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHH
Confidence 0000 0124677899999988888764 5999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+.+| +||+|||||+|||..+...+.+.|+++++..|+|+|++.|++. ++...+|++++|.+|+++++|+++++.+
T Consensus 176 ~~~p-~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 176 AVDP-DILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred hcCC-CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9888 8999999999999999999999999998656889999887654 6778899999999999999999887753
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-27 Score=228.04 Aligned_cols=211 Identities=21% Similarity=0.288 Sum_probs=162.3
Q ss_pred EEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEe
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.+..+|++.++....+ ..-+.++++|+|++++.||++++=||||+||||||++|-|-+.++ +|+|.+.-..
T Consensus 4 ~l~v~~~~KtFtlH~q-------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d--~G~I~v~H~g 74 (235)
T COG4778 4 PLNVSNVSKTFTLHQQ-------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD--EGQILVRHEG 74 (235)
T ss_pred eeeeecchhheEeeec-------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC--CceEEEEeCc
Confidence 3556677665533211 112457999999999999999999999999999999999977764 8999886432
Q ss_pred --C-----cc----ccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccC
Q 000937 696 --K-----IQ----ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764 (1218)
Q Consensus 696 --~-----~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 764 (1218)
+ .. ...++.+|||.|.-...|..+..|-++-.+.-+ ....+...+++.+++..|++.+..=.+.
T Consensus 75 ~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~La-- 149 (235)
T COG4778 75 EWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLA-- 149 (235)
T ss_pred chhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCC--
Confidence 1 11 123456899999888888887777665443322 3445666777889999999875332221
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHH-HhhceEEEE
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIF-ESFDELILL 843 (1218)
Q Consensus 765 ~~~~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~-~~~d~~~~l 843 (1218)
+.+.||||+|||.|||.++.|-+||+|||||+.||..++..++++|++-+.+|..+|=+-||- ++- ..+||++-+
T Consensus 150 --PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe--evre~vadR~~~~ 225 (235)
T COG4778 150 --PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE--EVREAVADRLLDV 225 (235)
T ss_pred --CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH--HHHHHHhhheeec
Confidence 358999999999999999999999999999999999999999999999888899999999973 443 356887766
Q ss_pred e
Q 000937 844 K 844 (1218)
Q Consensus 844 ~ 844 (1218)
.
T Consensus 226 ~ 226 (235)
T COG4778 226 S 226 (235)
T ss_pred c
Confidence 4
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-27 Score=274.33 Aligned_cols=186 Identities=23% Similarity=0.331 Sum_probs=155.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-------QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-------~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+... ++.++||+|+..+++.+||+||+.|..+.++..
T Consensus 59 LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~- 137 (400)
T PRK10070 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGIN- 137 (400)
T ss_pred EECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCC-
Confidence 6799999999999999995 47999999998865321 246899999999999999999999986544210
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
.++. ...++++++.+||.+..|..+ +.|||||||||+|||++
T Consensus 138 ---------~~~~------------------------~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL 179 (400)
T PRK10070 138 ---------AEER------------------------REKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARAL 179 (400)
T ss_pred ---------HHHH------------------------HHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHH
Confidence 1111 012467899999998888765 45999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+.+| +||+|||||+|||+.+...+++.|+++.++.++|||++.|.+ .++..++|+|++|.+|++++.|+++++..
T Consensus 180 ~~~P-~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 180 AINP-DILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred hcCC-CEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 9888 799999999999999999999999999866688999888765 46788999999999999999999987753
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-27 Score=259.85 Aligned_cols=194 Identities=21% Similarity=0.293 Sum_probs=152.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+... +..++||+|++.+++.+||+|++.+............
T Consensus 31 l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~ 110 (236)
T cd03219 31 LIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLL 110 (236)
T ss_pred EECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccccccc
Confidence 6799999999999999995 47999999998765331 2358999999999999999999998754321000000
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
........+ ....++++++.+||++..|+.+ +.|||||||||+|||+++.+
T Consensus 111 ~~~~~~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~ 161 (236)
T cd03219 111 ARARREERE------------------------ARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATD 161 (236)
T ss_pred ccccccHHH------------------------HHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcC
Confidence 000000000 0113567889999988777765 45999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
| ++++|||||+|||..+...+.+.|+++++ .|+|+|++-|++. ++...+|++++|.+|++++.|+++++.
T Consensus 162 p-~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 162 P-KLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred C-CEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 7 79999999999999999999999999986 6889888877654 667889999999999999999988764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-27 Score=233.43 Aligned_cols=180 Identities=22% Similarity=0.311 Sum_probs=151.7
Q ss_pred CCCCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000937 2 SSLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVG 72 (1218)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~ 72 (1218)
-.|.|.+||||||+.+...+ ...|+|++||+++.... .|+.+|+|.||-.+++..||.||..|+.+..+..
T Consensus 31 ~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~ 110 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKP 110 (223)
T ss_pred EEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCC
Confidence 35789999999999998887 46799999999998653 4788999999999999999999999999887632
Q ss_pred CchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHH
Q 000937 73 SRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGRE 152 (1218)
Q Consensus 73 ~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~e 152 (1218)
+++. +..|.++|+..||.|.++.. ...|||||+|||+||||
T Consensus 111 ----------~~~i------------------------~~rV~~~L~~VgL~~k~~~l-----P~~LSGGEQQRvaIARA 151 (223)
T COG2884 111 ----------PREI------------------------RRRVSEVLDLVGLKHKARAL-----PSQLSGGEQQRVAIARA 151 (223)
T ss_pred ----------HHHH------------------------HHHHHHHHHHhccchhhhcC-----ccccCchHHHHHHHHHH
Confidence 1221 12467889999999999854 46799999999999999
Q ss_pred HhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhc-cceEEEEcCCcEEEecC
Q 000937 153 MLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHL-FDDIILMAEGKILYHGP 224 (1218)
Q Consensus 153 ll~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~l-FD~IlvL~~G~ivy~G~ 224 (1218)
++-+| ++|+-||||-.||+..+.+|++.+.++.+ .|+||+++.| ..+++.. =-+++.|++|+++....
T Consensus 152 iV~~P-~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATH--d~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 152 IVNQP-AVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATH--DLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HccCC-CeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEec--cHHHHHhccCcEEEEeCCEEEeccc
Confidence 87776 89999999999999999999999999986 6999999975 3455554 45899999999987654
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-27 Score=255.87 Aligned_cols=179 Identities=24% Similarity=0.332 Sum_probs=146.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|++.+++.+||+|++.++....+.
T Consensus 31 i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-------- 102 (213)
T cd03259 31 LLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGV-------- 102 (213)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCC--------
Confidence 6799999999999999995 5799999999876432 245689999999999999999999987543210
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
...+. ...++.+++.+||.+..|..++ .||||||||++|||+++.+| +
T Consensus 103 --~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p-~ 150 (213)
T cd03259 103 --PKAEI------------------------RARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALAREP-S 150 (213)
T ss_pred --CHHHH------------------------HHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCC-C
Confidence 00000 0124667899999888887664 59999999999999999887 7
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
|++|||||+|||+.+...+++.|++++++.|+|||++-|.+ .++...+|++++|.+|++++.|
T Consensus 151 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 151 LLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999865688998887765 4677889999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-27 Score=268.78 Aligned_cols=185 Identities=29% Similarity=0.351 Sum_probs=153.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|.++|.++... ..++.++||+|++.+++.+||+|++.+.+...+.
T Consensus 35 l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~------- 107 (303)
T TIGR01288 35 LLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM------- 107 (303)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCC-------
Confidence 6799999999999999994 479999999987532 1345689999999999999999999976543210
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+.++. ...++.+++.+||.+..|+.++ .|||||||||+||++++.+|
T Consensus 108 ---~~~~~------------------------~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p- 154 (303)
T TIGR01288 108 ---STREI------------------------EAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDP- 154 (303)
T ss_pred ---CHHHH------------------------HHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 00000 0124567899999998888764 59999999999999998887
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||+|||+.+...+.+.|+++++ .|+|||++-|++. ++...+|+|++|.+|++++.|+++++..
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 89999999999999999999999999975 5889999887654 7778899999999999999999998864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-27 Score=258.92 Aligned_cols=185 Identities=25% Similarity=0.316 Sum_probs=152.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.... .++.++||+|++.+++.+||+||+.+.+..++..
T Consensus 36 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~-- 113 (233)
T cd03258 36 IIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVP-- 113 (233)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCC--
Confidence 6799999999999999995 4799999999876432 2456899999999999999999999875433110
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
..+. ...++.+++.+||.+..+..+ +.|||||||||+|||+++
T Consensus 114 --------~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 114 --------KAEI------------------------EERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALA 156 (233)
T ss_pred --------HHHH------------------------HHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHh
Confidence 0000 012467799999988877765 469999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| ++++|||||+|||+.+...+.+.|+++++..|+|+|++.|++ .++...+|++++|.+|++++.|+.+++.
T Consensus 157 ~~p-~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 157 NNP-KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred cCC-CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 887 799999999999999999999999999876688999988875 4667889999999999999999987764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-27 Score=233.82 Aligned_cols=187 Identities=21% Similarity=0.327 Sum_probs=161.1
Q ss_pred CCCCCCCCcchhhcccceeE---EEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGLV---TGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~~---~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|+|++||||||.=....|.+ +|.|.+||.|++.+-. |.-+||.|||...|-.|||+||++-..+.+..+.+
T Consensus 35 LLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~-- 112 (243)
T COG1137 35 LLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLK-- 112 (243)
T ss_pred EECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchh--
Confidence 78999999999999888865 6999999999997643 23468999999999999999999998877632111
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
.+++ +...+.+|++|+|.|++|..- -.||||||||+-|||+|..+
T Consensus 113 ------~~~~------------------------~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 113 ------KAER------------------------KEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAAN 157 (243)
T ss_pred ------HHHH------------------------HHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcC
Confidence 0111 123578999999999999864 34999999999999999998
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
| +.++||||-+|.||.+-.+|.+.++.+.. +|.-|++|=|.-+ |+....||.+++++|+++.+|+++++.+
T Consensus 158 P-~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 158 P-KFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred C-CEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 8 89999999999999999999999999986 5899999988776 8999999999999999999999999885
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-27 Score=255.98 Aligned_cols=180 Identities=26% Similarity=0.363 Sum_probs=149.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLE 80 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~~ 80 (1218)
|.|++|||||||.+...|. .+|+|.++|.++.. .++.++||+|++.+++.+||+|++.+....++..
T Consensus 35 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-------- 104 (220)
T cd03293 35 LVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVP-------- 104 (220)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcCCC--------
Confidence 6799999999999999995 47999999998764 3456899999999999999999999875543210
Q ss_pred hhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCceE
Q 000937 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKA 160 (1218)
Q Consensus 81 ~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~I 160 (1218)
..+. ...++.+++.+||.+..+..+ +.||||||||++|||+++.+| ++
T Consensus 105 --~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p-~l 152 (220)
T cd03293 105 --KAEA------------------------RERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDP-DV 152 (220)
T ss_pred --HHHH------------------------HHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCC-CE
Confidence 0000 012467789999988878765 459999999999999999888 79
Q ss_pred EEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEc--CCcEEEecChh
Q 000937 161 MFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMA--EGKILYHGPRE 226 (1218)
Q Consensus 161 LlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~--~G~ivy~G~~~ 226 (1218)
++|||||+|||+.+...+++.|+++.+..++|||++-|++. ++...+|++++|. +|++++.++.+
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 99999999999999999999999987656889998887654 6678899999999 79999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-27 Score=255.94 Aligned_cols=184 Identities=28% Similarity=0.319 Sum_probs=151.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|++||.++... ..++.++||+|+..+++.+||+|++.+..+.++..
T Consensus 31 i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~------ 104 (220)
T cd03265 31 LLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP------ 104 (220)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC------
Confidence 6799999999999999995 579999999877532 22456899999999999999999999875443210
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
.++. ...++.+++.+||++..|+.++ .|||||||||+||++++.+|
T Consensus 105 ----~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la~al~~~p- 150 (220)
T cd03265 105 ----GAER------------------------RERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIARSLVHRP- 150 (220)
T ss_pred ----HHHH------------------------HHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 0000 0124677999999988887764 59999999999999999888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
++++|||||+|||+.+...+.+.|++++++.++|+|++-|.+. ++...+|++++|.+|++++.|+++++
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 7999999999999999999999999998655788888877544 67788999999999999999987753
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-27 Score=258.09 Aligned_cols=184 Identities=22% Similarity=0.322 Sum_probs=151.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV----PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~----~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|++||.++.... .++.++||+|++.+++.+||+|++.+....++.
T Consensus 31 l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----- 105 (232)
T cd03218 31 LLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGL----- 105 (232)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCC-----
Confidence 6799999999999999995 5799999999875432 134589999999999999999999986433210
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
...+. ...++.+++.+||.+..++.+ +.|||||||||+||++++.+
T Consensus 106 -----~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 106 -----SKKER------------------------EEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATN 151 (232)
T ss_pred -----CHHHH------------------------HHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcC
Confidence 00000 112467889999988888765 45999999999999999888
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
| ++|+|||||+|||+.+...+.+.|+++++ .++|+|++-|++. ++...+|++++|++|++++.|+.+++.
T Consensus 152 p-~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 152 P-KFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred C-CEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 7 89999999999999999999999999875 5788888877654 788999999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-27 Score=263.62 Aligned_cols=186 Identities=27% Similarity=0.374 Sum_probs=150.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-----cccceEEeecccc-ccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-----VPQKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-----~~~~~~~yV~Q~D-~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+. ..++.++||+|++ ..+...||+|++.|.....+.
T Consensus 38 i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~--- 114 (287)
T PRK13637 38 LIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL--- 114 (287)
T ss_pred EECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCC---
Confidence 6799999999999999995 579999999988642 2345789999985 234457999999986543210
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc--ccccceecCCcCCcCCccccchhhHHHH
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD--ICADTLVGDAIRRGISGGQKRRLTTGRE 152 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~--~~~dT~VG~~~~rGLSGGeKrRvSIA~e 152 (1218)
++++. ...++++++.+||. +..|+.+ +.||||||||++|||+
T Consensus 115 -------~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~~~-----~~LSgGq~qrv~iAra 158 (287)
T PRK13637 115 -------SEEEI------------------------ENRVKRAMNIVGLDYEDYKDKSP-----FELSGGQKRRVAIAGV 158 (287)
T ss_pred -------CHHHH------------------------HHHHHHHHHHcCCCchhhccCCc-----ccCCHHHHHHHHHHHH
Confidence 11111 11356789999997 5666654 5699999999999999
Q ss_pred HhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 153 MLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 153 ll~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++.+| +||+|||||+|||+.+...+++.|+++++..|+|||++.|.+ .++...+|+|++|++|++++.|+++++.+
T Consensus 159 L~~~P-~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 159 VAMEP-KILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHcCC-CEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 98888 799999999999999999999999999876688999988865 46678899999999999999999988753
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-27 Score=258.21 Aligned_cols=183 Identities=21% Similarity=0.281 Sum_probs=147.8
Q ss_pred CCCCCCCCcchhhcccceeE--------EEEEEECCcccCCcc-----ccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000937 4 LNDRIGFGLSVISWFCTGLV--------TGEVSYNGYKLEEFV-----PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQG 70 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~~--------~G~V~~nG~~~~~~~-----~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~ 70 (1218)
|.|++|||||||.+...|.. +|+|+++|.++.+.. .++.++||+|++.++ .+||+||+.++....+
T Consensus 31 i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~ 109 (227)
T cd03260 31 LIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG 109 (227)
T ss_pred EECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC
Confidence 67999999999999999865 699999999876432 245689999998888 7999999998755331
Q ss_pred CCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHH
Q 000937 71 VGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 71 ~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
.. ...+. ...++++++.+||.+..+..+. .+.||||||||++||
T Consensus 110 ~~---------~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la 153 (227)
T cd03260 110 IK---------LKEEL------------------------DERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLA 153 (227)
T ss_pred CC---------cHHHH------------------------HHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHH
Confidence 00 00000 0124677899999887776531 256999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhh
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRES 227 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~ 227 (1218)
|+++.+| ++|+|||||+|||+.+...+++.|+++++ . +|+|++.|++. ++...+|++++|.+|++++.|++++
T Consensus 154 ~al~~~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 154 RALANEP-EVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHhcCC-CEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999887 79999999999999999999999999976 3 78888877654 6778899999999999999999875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=294.20 Aligned_cols=205 Identities=24% Similarity=0.415 Sum_probs=169.6
Q ss_pred eEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCE
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
..++++|.+++-+.+ ...+.|+|||++|++|+++||+||-|||||+||.+|.|..+. .+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~~-----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~--~sG~v~v~gs 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE-----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK--LSGSVAVNGS 583 (1381)
T ss_pred ceEEEeeeeEecCCC-----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc--ccceEEEcCe
Confidence 457889988876431 123489999999999999999999999999999999997765 5899999984
Q ss_pred eCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCc-------cccccccCCCC
Q 000937 695 PKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-------IKESLVGIPGV 767 (1218)
Q Consensus 695 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~ 767 (1218)
++||+|++-++. -|||||+.|+.. -.+++.+++++...|.+ ...|.+|..|+
T Consensus 584 ----------iaYv~Q~pWI~n-gTvreNILFG~~----------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi 642 (1381)
T KOG0054|consen 584 ----------VAYVPQQPWIQN-GTVRENILFGSP----------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGI 642 (1381)
T ss_pred ----------EEEeccccHhhC-CcHHHhhhcCcc----------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc
Confidence 799999988764 699999999632 12345666776665543 33466888776
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 768 ~~LSgGerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
+||||||||+++|||+-+|++|++||.|.|++|++..+++.+..-+-.-+++|+|++|||. +..+.+|.+++|+ +|
T Consensus 643 -nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~-~G 718 (1381)
T KOG0054|consen 643 -NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLK-DG 718 (1381)
T ss_pred -CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEec-CC
Confidence 6999999999999999999999999999999999999999865444444689999999985 6789999999998 69
Q ss_pred EEEEEcCCCC
Q 000937 848 RIIYSGPLGN 857 (1218)
Q Consensus 848 ~~~~~g~~~~ 857 (1218)
++...|+.++
T Consensus 719 ~I~~~Gty~e 728 (1381)
T KOG0054|consen 719 KIVESGTYEE 728 (1381)
T ss_pred eEecccCHHH
Confidence 9999999864
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-27 Score=258.76 Aligned_cols=185 Identities=26% Similarity=0.330 Sum_probs=151.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.... .++.++||+|++.+++.+||+||+.+..+..+..
T Consensus 32 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----- 106 (242)
T cd03295 32 LIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWP----- 106 (242)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCC-----
Confidence 6799999999999999995 4799999999876432 2456799999999999999999999875432110
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcc--cccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDI--CADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~--~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
..+. ...+.++++.+||.+ ..|..+ +.|||||||||+|||+++.
T Consensus 107 -----~~~~------------------------~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 107 -----KEKI------------------------RERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAA 152 (242)
T ss_pred -----HHHH------------------------HHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhc
Confidence 0000 012467789999985 556544 5699999999999999998
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
+| ++++|||||+|||+.+...+.+.|+++++..|+|+|++.|++. ++...+|+|++|.+|++++.|+++++.
T Consensus 153 ~p-~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 153 DP-PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred CC-CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 88 7999999999999999999999999998655889999888764 667889999999999999999988764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-26 Score=254.92 Aligned_cols=198 Identities=21% Similarity=0.276 Sum_probs=148.9
Q ss_pred ceEEEEEeEEEEEecCchhhhhccCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
+..+.+.++++.++.. +. +++.+++..++.-+-.+++|+||+||||++|++.|...| ..|.+.+++
T Consensus 360 ~p~l~i~~V~f~y~p~-----------~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~ 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS-----------EY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP 425 (582)
T ss_pred CCeeEEEeeeccCCCc-----------ch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc
Confidence 4567888888776421 11 688999999999999999999999999999999996654 367765543
Q ss_pred EeCccccccceEEEeccCCCCCCCCCHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCH
Q 000937 694 YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-KESLVGIPGVSGLST 772 (1218)
Q Consensus 694 ~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~LSg 772 (1218)
+.+++|..|...-+..+.|.+- .+-..++ +.. .++.+++-+..+||+.- +... +.+|||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~----~~ee~r~hl~~~Gl~g~la~~s-----i~~LSG 485 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF--PGK----TEEEIRRHLGSFGLSGELALQS-----IASLSG 485 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHHH-HHHHHhC--CCC----CHHHHHHHHHhcCCCchhhhcc-----ccccCC
Confidence 4568888887655545555443 3333222 111 23446678889999742 2222 458999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEE
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 773 GerqRv~ia~~L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~ 850 (1218)
|||-||++|.....+|.+|+|||||+.||-.+-..+.+.|+.. +..||++||+.+ -+-..|+.+.+.. +|++.
T Consensus 486 GQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve-~g~vt 558 (582)
T KOG0062|consen 486 GQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVE-DGKVT 558 (582)
T ss_pred cchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEc-CCcEE
Confidence 9999999999999999999999999999999999988888875 458999999854 3455688888887 57765
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-27 Score=241.43 Aligned_cols=186 Identities=23% Similarity=0.362 Sum_probs=154.3
Q ss_pred CCCCCCCCCcchhhccccee---EEEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCch
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRA 75 (1218)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~ 75 (1218)
.|.||+||||||+.+..+|. .+|+|.++|.|++.... |.-++||||..-.||.|||+|||..++..+..
T Consensus 33 ~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~---- 108 (237)
T COG0410 33 ALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD---- 108 (237)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----
Confidence 47899999999999999994 47999999999996542 35578999999999999999999987654310
Q ss_pred hhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhC-CcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILG-LDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 76 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lg-L~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
++.++ ...|.+.+.|= |..-++.+-|+ |||||+|=++|||+|+
T Consensus 109 -------~~~~~------------------------~~~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaRALm 152 (237)
T COG0410 109 -------KEAQE------------------------RDLEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAIARALM 152 (237)
T ss_pred -------ccccc------------------------ccHHHHHHHChhHHHHhcCcccC-----CChHHHHHHHHHHHHh
Confidence 00000 00244444443 55666777665 9999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.+| ++|+|||||.||-|.-..+|.++++++.++.|.||+.. .|--....+.+|+.+||..|++++.|+.+++.+
T Consensus 153 ~~P-klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLV-EQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 153 SRP-KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLV-EQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred cCC-CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEE-eccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 998 99999999999999999999999999998777777775 899999999999999999999999999999885
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-27 Score=253.55 Aligned_cols=179 Identities=24% Similarity=0.325 Sum_probs=148.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.++|.++.... .++.++||+|++.+++.+||+|++.+.++.++..
T Consensus 31 l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~------- 103 (213)
T cd03301 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP------- 103 (213)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCC-------
Confidence 6799999999999999995 4799999999876432 2346899999999999999999999875433100
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
.++. ...++.+++.+||.+..|..++ .||||||||++|||+++.+| +
T Consensus 104 ---~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~laral~~~p-~ 150 (213)
T cd03301 104 ---KDEI------------------------DERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGRAIVREP-K 150 (213)
T ss_pred ---HHHH------------------------HHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHHHHhcCC-C
Confidence 0000 0124677899999988887764 59999999999999998887 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
+++|||||+|||+.+...+.+.|++++++.++|+|++.|++ .++...+|+|++|.+|+++++|
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999876688999998876 3667789999999999999887
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-27 Score=271.20 Aligned_cols=180 Identities=27% Similarity=0.396 Sum_probs=153.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-------cccceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-------VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-------~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+. ..++.++||+|+..++|.+||+||+.|..+-
T Consensus 29 l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~----- 103 (352)
T PRK11144 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK----- 103 (352)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh-----
Confidence 6799999999999999995 479999999887531 1245689999999999999999999985320
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
.. ...++++++.+||++..|..+ +.|||||||||+|||++
T Consensus 104 -----------~~------------------------~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL 143 (352)
T PRK11144 104 -----------SM------------------------VAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRAL 143 (352)
T ss_pred -----------hh------------------------HHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHH
Confidence 00 012467799999998888765 45999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+.+| ++|+|||||+|||+.+...+.+.|++++++.++|+|++-|.+ .++..++|++++|.+|+++++|+++++..
T Consensus 144 ~~~p-~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 144 LTAP-ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred HcCC-CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9888 899999999999999999999999999876688888887765 47889999999999999999999998864
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-27 Score=243.86 Aligned_cols=185 Identities=25% Similarity=0.298 Sum_probs=153.5
Q ss_pred CCCCCCCCcchhhcccce---eEEEEEEECCcccCCcc----ccceEEeecccc--ccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV----PQKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g---~~~G~V~~nG~~~~~~~----~~~~~~yV~Q~D--~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
+.|++|||||||+...-| ..+|+|+++|.+..... .++.+-+|.||+ .+-|..||++.|.=+.+..+..
T Consensus 38 ivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~-- 115 (252)
T COG1124 38 IVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS-- 115 (252)
T ss_pred EEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCcc--
Confidence 568999999999999998 46799999998877643 456788999997 6789999999998776653211
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
..++ .+.++++.+||....=. .+...|||||||||+|||||.
T Consensus 116 --------~~~~--------------------------~i~~~L~~VgL~~~~l~----R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 116 --------KSQQ--------------------------RIAELLDQVGLPPSFLD----RRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred --------HHHH--------------------------HHHHHHHHcCCCHHHHh----cCchhcChhHHHHHHHHHHhc
Confidence 1111 14677899999864332 234569999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.+| ++|+||||||+||+...-+|++.|.++.+..+.|.++.-| -..-+..++|||+||.+|++++.+|..++.+
T Consensus 158 ~~P-klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH-dl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 158 PEP-KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH-DLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred cCC-CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC-cHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 998 8999999999999999999999999999888888888755 4556788999999999999999999999886
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-27 Score=258.64 Aligned_cols=193 Identities=22% Similarity=0.302 Sum_probs=151.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|++.+++.+||+|++.++...... ..
T Consensus 32 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~ 110 (241)
T cd03256 32 LIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRS-TW 110 (241)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccch-hh
Confidence 6799999999999999985 4799999999876432 245689999999999999999999886431100 00
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
.... .....+ ....++.+++.+||.+..+..+ +.|||||||||+|||+++
T Consensus 111 ~~~~-~~~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 111 RSLF-GLFPKE------------------------EKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALM 160 (241)
T ss_pred hhhc-ccCcHH------------------------HHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHh
Confidence 0000 000000 0112466789999987777654 469999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| +||+|||||+|||+.+...+.+.|++++++.|+|||++.|++. ++...+|++++|.+|++++.|+++++.
T Consensus 161 ~~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 161 QQP-KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred cCC-CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 887 7999999999999999999999999998666889999888655 567799999999999999999988764
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-27 Score=271.40 Aligned_cols=184 Identities=25% Similarity=0.408 Sum_probs=153.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-------cccceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-------VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-------~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++... ..++.++||+|++.+++.+||+||+.|+.+...
T Consensus 28 l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~--- 104 (354)
T TIGR02142 28 IFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR--- 104 (354)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccC---
Confidence 6799999999999999995 479999999887532 124568999999999999999999998653210
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
..+. ...++++++.+||++..|..+ +.|||||||||+|||++
T Consensus 105 ---------~~~~------------------------~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL 146 (354)
T TIGR02142 105 ---------PSER------------------------RISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRAL 146 (354)
T ss_pred ---------hhHH------------------------HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHH
Confidence 0000 012467899999998888765 45999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+.+| ++|+|||||+|||+.+...+.+.|++++++.|+|+|++.|++. ++..++|+|++|.+|++++.|+++++..
T Consensus 147 ~~~p-~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 147 LSSP-RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HcCC-CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 9888 7999999999999999999999999998766889888887654 6788899999999999999999988764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-27 Score=263.72 Aligned_cols=184 Identities=21% Similarity=0.294 Sum_probs=149.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-------cccceEEeecccc--ccCCCCCHHHHHHHHhhccCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-------VPQKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGV 71 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-------~~~~~~~yV~Q~D--~l~~~LTVrEtL~Faa~lk~~ 71 (1218)
|.|++|||||||.+...|. .+|+|.+||.++... ..++.++||+|++ .++ ..||+||+.|..+..+.
T Consensus 38 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~ 116 (290)
T PRK13634 38 IIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGV 116 (290)
T ss_pred EECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCC
Confidence 6799999999999999995 579999999987521 2245689999985 344 47999999987543211
Q ss_pred CCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc-ccccceecCCcCCcCCccccchhhHH
Q 000937 72 GSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD-ICADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 72 ~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
+.++. ...++.+++.+||. +..|+.+ +.|||||||||+||
T Consensus 117 ----------~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~lA 157 (290)
T PRK13634 117 ----------SEEDA------------------------KQKAREMIELVGLPEELLARSP-----FELSGGQMRRVAIA 157 (290)
T ss_pred ----------CHHHH------------------------HHHHHHHHHHCCCChhhhhCCc-----ccCCHHHHHHHHHH
Confidence 01110 01356789999997 5677665 45999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
|+++.+| +||+|||||+|||+.+...+++.|++++++.|+|||++.|.+. ++...+|+|++|++|++++.|+++++.
T Consensus 158 raL~~~P-~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 158 GVLAMEP-EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HHHHcCC-CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999888 8999999999999999999999999998766889999887655 677889999999999999999988764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-27 Score=265.71 Aligned_cols=184 Identities=23% Similarity=0.329 Sum_probs=155.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+. ..++.++||+|++.+++.+||+|+|.|.+++.+..
T Consensus 33 l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~------ 106 (301)
T TIGR03522 33 FLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK------ 106 (301)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC------
Confidence 6899999999999999995 589999999987642 23456899999999999999999999987654310
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+++. ...++.+++.+||.+..|..++ .|||||||||+||++++.+|
T Consensus 107 ----~~~~------------------------~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p- 152 (301)
T TIGR03522 107 ----GQLL------------------------KQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDP- 152 (301)
T ss_pred ----HHHH------------------------HHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 1110 0124678999999999988764 59999999999999998888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||+|||+.+...+++.|+++++ ++|||++-|++ .++-+++|+|++|++|++++.|+.+++..
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 89999999999999999999999999863 68888887754 47888999999999999999999999875
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-27 Score=255.88 Aligned_cols=181 Identities=19% Similarity=0.300 Sum_probs=147.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-------QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~-------~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+... ++.++||+|+..+++.+||+||+.|.....+.
T Consensus 40 l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-- 117 (233)
T PRK11629 40 IVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK-- 117 (233)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCC--
Confidence 6799999999999999995 58999999998865431 24589999999999999999999997543210
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
..++. ...++++++.+||++..++.+ +.||||||||++|||++
T Consensus 118 --------~~~~~------------------------~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al 160 (233)
T PRK11629 118 --------KPAEI------------------------NSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARAL 160 (233)
T ss_pred --------CHHHH------------------------HHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHH
Confidence 00010 012467789999988777765 45999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChh
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRE 226 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~ 226 (1218)
+.+| +||+|||||+|||+.+...+.+.|+++++..|+|+|++-|++. + ...+|++++|.+|++++.|+.-
T Consensus 161 ~~~p-~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~-~~~~~~~~~l~~G~i~~~~~~~ 230 (233)
T PRK11629 161 VNNP-RLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-L-AKRMSRQLEMRDGRLTAELSLM 230 (233)
T ss_pred hcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H-HHhhCEEEEEECCEEEEEeccC
Confidence 9887 8999999999999999999999999987656889999888764 3 4457999999999999998753
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=262.71 Aligned_cols=195 Identities=20% Similarity=0.312 Sum_probs=154.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-------cccceEEeecccc--ccCCCCCHHHHHHHHhhccCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-------VPQKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGV 71 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-------~~~~~~~yV~Q~D--~l~~~LTVrEtL~Faa~lk~~ 71 (1218)
+.|++|||||||.+...|. .+|+|++||.++... ..++.++||+|++ .+++ .||.|++.|..+..+.
T Consensus 37 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~ 115 (288)
T PRK13643 37 LIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGI 115 (288)
T ss_pred EECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCC
Confidence 6799999999999999995 579999999987521 2345689999985 4555 6999999997653321
Q ss_pred CCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc-ccccceecCCcCCcCCccccchhhHH
Q 000937 72 GSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD-ICADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 72 ~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
++.+. +..++++++.+||. +..+..+ +.||||||||++||
T Consensus 116 ----------~~~~~------------------------~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGqkqrvaiA 156 (288)
T PRK13643 116 ----------PKEKA------------------------EKIAAEKLEMVGLADEFWEKSP-----FELSGGQMRRVAIA 156 (288)
T ss_pred ----------CHHHH------------------------HHHHHHHHHHcCCChhhccCCc-----ccCCHHHHHHHHHH
Confidence 01111 11356778999996 4556543 56999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
|+++.+| +||+|||||+|||+.+...+.+.|+++++ .|+|||++.|.+ .++...+|+|++|.+|+++++|+++++.+
T Consensus 157 ~aL~~~p-~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 157 GILAMEP-EVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHhCC-CEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999888 79999999999999999999999999875 588999988765 56778999999999999999999998753
Q ss_pred ---HHHhCCCCCCC
Q 000937 231 ---FFESCGFRCPD 241 (1218)
Q Consensus 231 ---yF~~lG~~~p~ 241 (1218)
+++..|+.+|.
T Consensus 234 ~~~~~~~~~~~~p~ 247 (288)
T PRK13643 234 EVDFLKAHELGVPK 247 (288)
T ss_pred CHHHHHHcCCCCCh
Confidence 34556666555
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-27 Score=254.69 Aligned_cols=182 Identities=27% Similarity=0.410 Sum_probs=149.6
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|++||.++... ..++.++||+|++.+++.+||+|++.+..+..+..
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~------ 106 (220)
T cd03263 33 LLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP------ 106 (220)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC------
Confidence 6799999999999999994 479999999987542 23456899999999999999999999875543210
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
.++. ...++++++.+||.+..++.++ .||||||||++|||+++.+|
T Consensus 107 ----~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p- 152 (220)
T cd03263 107 ----KSEI------------------------KEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIALIGGP- 152 (220)
T ss_pred ----HHHH------------------------HHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 0000 0124677899999888887764 59999999999999999887
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
++++|||||+|||+.+...+.+.|+++++ ++|+|++-|++. ++...+|++++|.+|++++.|+++++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 89999999999999999999999999874 488888877655 56678999999999999999998764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-27 Score=299.65 Aligned_cols=187 Identities=22% Similarity=0.349 Sum_probs=154.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ +|+.++||+|++.+|+ .||+|||.++.. +
T Consensus 488 ivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~~----~----- 557 (694)
T TIGR01846 488 IVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCNP----G----- 557 (694)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCCC----C-----
Confidence 5689999999999999994 5799999999998764 4677899999998887 599999988421 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++++.++++.+..++++.+ |++..||.+|+. .+.||||||||++|||+++.+|
T Consensus 558 -------------~~~~~i~~a~~~~~l~~~i~~-----------lp~gl~t~i~~~-g~~LSgGq~qri~lARall~~~ 612 (694)
T TIGR01846 558 -------------APFEHVIHAAKLAGAHDFISE-----------LPQGYNTEVGEK-GANLSGGQRQRIAIARALVGNP 612 (694)
T ss_pred -------------CCHHHHHHHHHHcChHHHHHh-----------CcCccCcEecCC-CCCCCHHHHHHHHHHHHHHhCC
Confidence 011345556666655554443 345669999986 4679999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+|||||||||+.++..+.+.|+++. .++|+|++.|++ ++...+|+|++|++|+++++|+++++++
T Consensus 613 -~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~--~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 613 -RILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRL--STVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred -CEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCCh--HHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 7999999999999999999999999875 467888877766 5778899999999999999999999885
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=265.62 Aligned_cols=190 Identities=21% Similarity=0.263 Sum_probs=152.4
Q ss_pred CCCCCCCCcchhhcccceeE------EEEEEECCcccCCccc------c-ceEEeecccc--ccCCCCCHHHHHHHHhhc
Q 000937 4 LNDRIGFGLSVISWFCTGLV------TGEVSYNGYKLEEFVP------Q-KLSAYVSQYD--LHIPEMTVRETLDFSTYC 68 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~~------~G~V~~nG~~~~~~~~------~-~~~~yV~Q~D--~l~~~LTVrEtL~Faa~l 68 (1218)
|.|++|||||||.+...|.. +|+|.+||.++..... | +.++||+|++ .+.|.+||.|++.+....
T Consensus 47 ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~ 126 (330)
T PRK09473 47 IVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML 126 (330)
T ss_pred EECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHH
Confidence 67999999999999999853 8999999999865431 2 3689999997 788999999999876543
Q ss_pred cCCCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhh
Q 000937 69 QGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLT 148 (1218)
Q Consensus 69 k~~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvS 148 (1218)
... .+.++. ...+.++++.+||.+..+. + +.+.+.|||||||||+
T Consensus 127 ~~~---------~~~~~~------------------------~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~QRv~ 171 (330)
T PRK09473 127 HKG---------MSKAEA------------------------FEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQRVM 171 (330)
T ss_pred hcC---------CCHHHH------------------------HHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHHHHH
Confidence 210 001110 0124667888999764433 2 2456789999999999
Q ss_pred HHHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 149 TGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 149 IA~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
|||+++.+| ++|++||||||||..+..++++.|+++.++.|+|+|++.|... .+..++|+|+||++|++++.|+++++
T Consensus 172 IArAL~~~P-~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i 249 (330)
T PRK09473 172 IAMALLCRP-KLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDV 249 (330)
T ss_pred HHHHHHcCC-CEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999988 8999999999999999999999999998766889988877654 55678999999999999999999988
Q ss_pred HH
Q 000937 229 LE 230 (1218)
Q Consensus 229 ~~ 230 (1218)
..
T Consensus 250 ~~ 251 (330)
T PRK09473 250 FY 251 (330)
T ss_pred Hh
Confidence 64
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-27 Score=293.22 Aligned_cols=187 Identities=20% Similarity=0.322 Sum_probs=152.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ .|+.++||+|++.+|+ .|+||||.++.. +
T Consensus 366 IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~----~----- 435 (588)
T PRK13657 366 IVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGRP----D----- 435 (588)
T ss_pred EECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCCC----C-----
Confidence 5689999999999999995 5799999999988754 4567999999999886 599999988521 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
.+++++..+++.+..+.++.+ |++..||.+|+. .+.||||||||++|||+++.+|
T Consensus 436 -------------~~d~~i~~al~~~~l~~~i~~-----------lp~gldt~i~~~-g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 436 -------------ATDEEMRAAAERAQAHDFIER-----------KPDGYDTVVGER-GRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred -------------CCHHHHHHHHHHhCHHHHHHh-----------CcccccchhcCC-CCCCCHHHHHHHHHHHHHhcCC
Confidence 011245555555554444433 455669999985 4569999999999999999888
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++||||||+||+.++..+.+.|+++. .++|+|++-|++ ++.+.+|+|++|.+|++++.|+++++++
T Consensus 491 -~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 491 -PILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred -CEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 7999999999999999999999999875 367777777776 5789999999999999999999999874
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=264.14 Aligned_cols=195 Identities=22% Similarity=0.353 Sum_probs=150.9
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-------------------cccceEEeecccc--ccCCCCCHH
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-------------------VPQKLSAYVSQYD--LHIPEMTVR 59 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-------------------~~~~~~~yV~Q~D--~l~~~LTVr 59 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+. ..++.++||+|++ .+++ .||+
T Consensus 57 I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~ 135 (320)
T PRK13631 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIE 135 (320)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHH
Confidence 5799999999999999995 579999999887532 2346689999986 4665 5999
Q ss_pred HHHHHHhhccCCCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc-ccccceecCCcCCc
Q 000937 60 ETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD-ICADTLVGDAIRRG 138 (1218)
Q Consensus 60 EtL~Faa~lk~~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~-~~~dT~VG~~~~rG 138 (1218)
|++.|.....+. +.++. ...++++++.+||. +..+.. .+.
T Consensus 136 eni~~~~~~~~~----------~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~-----~~~ 176 (320)
T PRK13631 136 KDIMFGPVALGV----------KKSEA------------------------KKLAKFYLNKMGLDDSYLERS-----PFG 176 (320)
T ss_pred HHHHhhHHhcCC----------CHHHH------------------------HHHHHHHHHHcCCChhHhcCC-----ccc
Confidence 999986532210 01110 01246678999996 455544 356
Q ss_pred CCccccchhhHHHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCc
Q 000937 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGK 218 (1218)
Q Consensus 139 LSGGeKrRvSIA~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ 218 (1218)
|||||||||+|||+++.+| +||+|||||+|||+.++..+++.|+++++ .|+|||++.|.+. ++...+|+|++|.+|+
T Consensus 177 LSgGqkqRvaiAraL~~~p-~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~-~~~~~adri~vl~~G~ 253 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQP-EILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTME-HVLEVADEVIVMDKGK 253 (320)
T ss_pred CCHHHHHHHHHHHHHHcCC-CEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 9999999999999999888 79999999999999999999999999875 5889888877643 5678899999999999
Q ss_pred EEEecChhhHHH---HHHhCCCCCCC
Q 000937 219 ILYHGPRESVLE---FFESCGFRCPD 241 (1218)
Q Consensus 219 ivy~G~~~~l~~---yF~~lG~~~p~ 241 (1218)
+++.|+++++.. .++..|...|.
T Consensus 254 i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 254 ILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred EEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 999999987752 23444544433
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=251.57 Aligned_cols=177 Identities=22% Similarity=0.318 Sum_probs=146.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLE 80 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~~ 80 (1218)
|.|++|||||||.+...|. .+|+|++||.++.. ..++.++||+|+..+++.+||+|++.+..+.++..
T Consensus 31 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-------- 101 (210)
T cd03269 31 LLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK-------- 101 (210)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC--------
Confidence 6799999999999999984 57999999998764 34567899999999999999999999875543210
Q ss_pred hhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCceE
Q 000937 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKA 160 (1218)
Q Consensus 81 ~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~I 160 (1218)
..+. ...++++++.+||.+..++.+ +.||||||||++||++++.+| ++
T Consensus 102 --~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p-~~ 149 (210)
T cd03269 102 --KEEA------------------------RRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDP-EL 149 (210)
T ss_pred --hHHH------------------------HHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCC-CE
Confidence 0000 012467789999988888765 459999999999999999887 79
Q ss_pred EEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 161 MFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 161 LlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
++|||||+|||+.+...+.+.|+++++ .++|++++-|++. ++.+.+|++++|.+|++++.|
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999875 4788888877654 567789999999999999875
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=258.78 Aligned_cols=186 Identities=20% Similarity=0.284 Sum_probs=151.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|+..+++.+||+||+.+.......
T Consensus 38 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~--- 114 (269)
T PRK11831 38 IMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ--- 114 (269)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccC---
Confidence 6799999999999999995 4799999998876432 244689999999999999999999886432100
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
.+..+. ...+..+++.+||.+..|..++ .|||||||||+|||+++
T Consensus 115 ------~~~~~~------------------------~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~laral~ 159 (269)
T PRK11831 115 ------LPAPLL------------------------HSTVMMKLEAVGLRGAAKLMPS-----ELSGGMARRAALARAIA 159 (269)
T ss_pred ------CCHHHH------------------------HHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHh
Confidence 000000 0124567899999988887764 59999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| ++|+|||||+|||+.+...+.+.|+++++..|+|||++.|.+ .++...+|++++|.+|++++.|+++++.
T Consensus 160 ~~p-~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 160 LEP-DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred cCC-CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 887 799999999999999999999999999865578988887764 4677889999999999999999988764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=253.86 Aligned_cols=184 Identities=25% Similarity=0.319 Sum_probs=148.6
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLE 80 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~~ 80 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+...+ .+||+|++.+++.+||+|++.+........
T Consensus 16 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~--~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-------- 85 (230)
T TIGR01184 16 LIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD--RMVVFQNYSLLPWLTVRENIALAVDRVLPD-------- 85 (230)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--heEEecCcccCCCCCHHHHHHHHHHhcccC--------
Confidence 6799999999999999985 479999999988654322 489999999999999999999863210000
Q ss_pred hhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCceE
Q 000937 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKA 160 (1218)
Q Consensus 81 ~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~I 160 (1218)
....+. ...++++++.+||++..++.+ +.||||||||++|||+++.+| ++
T Consensus 86 ~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p-~l 135 (230)
T TIGR01184 86 LSKSER------------------------RAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRP-KV 135 (230)
T ss_pred CCHHHH------------------------HHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCC-CE
Confidence 000000 012467789999998888765 459999999999999999888 89
Q ss_pred EEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 161 MFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 161 LlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
++|||||+|||+.+...+.+.|++++++.|+|||++-|++. ++...+|++++|.+|++++.|+..++
T Consensus 136 llLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 136 LLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999999999999999998766889988877654 67788999999999999999976544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=245.22 Aligned_cols=168 Identities=18% Similarity=0.233 Sum_probs=131.1
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-------ceeeEEEECCEeCccccccceEEEeccCCCCCCCCC
Q 000937 647 DDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-------CFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHIT 719 (1218)
Q Consensus 647 ~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~-------~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 719 (1218)
+++++++++| +++|+||||||||||+++|+|..++. ...|++.++|++.......+.+++++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999875431 12357878877643333356799999987665
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCcEEEEeC
Q 000937 720 IEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELV----ANPSIIFMDE 795 (1218)
Q Consensus 720 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~----~~p~llllDE 795 (1218)
|. .. ..++++++++. .+..++.+ ..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~----~~-------~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS----II-------SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee----EE-------ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 00 12345566665 34444443 579999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCC
Q 000937 796 PTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 796 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
||+|||+..+..+.+.|+++++ +.|||++||+++ ..+.+|+++.+...+
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~~~ 192 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTMQE 192 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEecc
Confidence 9999999999999999999865 789999999974 467899999987654
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=253.07 Aligned_cols=178 Identities=22% Similarity=0.364 Sum_probs=146.6
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|++||.++... ..++.++||+|++.+++.+||+|++.+....++.
T Consensus 36 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~------- 108 (218)
T cd03266 36 LLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL------- 108 (218)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC-------
Confidence 6799999999999999995 479999999987642 2345689999999999999999999986543211
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
...+. ...++++++.+||.+..+..+ +.||||||||++|||+++.+|
T Consensus 109 ---~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p- 155 (218)
T cd03266 109 ---KGDEL------------------------TARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIARALVHDP- 155 (218)
T ss_pred ---CHHHH------------------------HHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHHHHhcCC-
Confidence 00000 112467899999988888765 459999999999999998887
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
++|+|||||+|||+.+...+.+.|+++++ .++|+|++.|++ .++...+|++++|++|++++.|
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 79999999999999999999999999875 578999888866 4677889999999999998875
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=266.52 Aligned_cols=186 Identities=25% Similarity=0.313 Sum_probs=153.6
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCc----ccCCcc------cc-ceEEeeccccccCCCCCHHHHHHHHhhcc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGY----KLEEFV------PQ-KLSAYVSQYDLHIPEMTVRETLDFSTYCQ 69 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~----~~~~~~------~~-~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk 69 (1218)
|.|++|||||||.+...|. .+|+|+++|. ++...+ .| +.++||+|+..++|.+||+||+.|..+.+
T Consensus 55 I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~ 134 (382)
T TIGR03415 55 LMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ 134 (382)
T ss_pred EECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc
Confidence 6799999999999999995 4799999996 333221 11 46899999999999999999999986543
Q ss_pred CCCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhH
Q 000937 70 GVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTT 149 (1218)
Q Consensus 70 ~~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSI 149 (1218)
+.. +.+. ...++++++.+||++..|..++ .|||||||||+|
T Consensus 135 g~~----------~~~~------------------------~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~L 175 (382)
T TIGR03415 135 GMP----------EAER------------------------RKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGL 175 (382)
T ss_pred CCC----------HHHH------------------------HHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHH
Confidence 210 1111 0124677999999988887764 499999999999
Q ss_pred HHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 150 GREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 150 A~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
||+++.+| +||+|||||||||+.+..++++.|+++.++.++|||++.|.+. ++.+++|+|++|.+|+++..|+++++.
T Consensus 176 ARALa~~P-~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 176 ARAFAMDA-DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHHHhcCC-CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99998887 8999999999999999999999999998766889999887644 678999999999999999999998886
Q ss_pred H
Q 000937 230 E 230 (1218)
Q Consensus 230 ~ 230 (1218)
.
T Consensus 254 ~ 254 (382)
T TIGR03415 254 L 254 (382)
T ss_pred h
Confidence 3
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=252.62 Aligned_cols=174 Identities=22% Similarity=0.317 Sum_probs=142.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|++.+++.+||+|++.|..+.++..
T Consensus 34 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-- 111 (216)
T TIGR00960 34 LVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVP-- 111 (216)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCC--
Confidence 6799999999999999995 4799999999875422 3456899999999999999999999975533210
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
.++. ...++++++.+||++..|..++ .|||||||||+|||+++
T Consensus 112 --------~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~ 154 (216)
T TIGR00960 112 --------PRDA------------------------NERVSAALEKVGLEGKAHALPM-----QLSGGEQQRVAIARAIV 154 (216)
T ss_pred --------HHHH------------------------HHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHh
Confidence 0000 0124677899999888887654 59999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcE
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKI 219 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~i 219 (1218)
.+| +||+|||||+|||+.+...+.+.|+++++ .++|+|++-|.+ .++...+|++++|.+|++
T Consensus 155 ~~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 155 HKP-PLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred cCC-CEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 887 89999999999999999999999999875 478888887765 366678999999999974
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=252.98 Aligned_cols=182 Identities=22% Similarity=0.391 Sum_probs=147.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP----QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~----~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|+++|.++..... ++.++||+|++.+++.+||+|++.+...... .
T Consensus 31 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~-- 105 (222)
T cd03224 31 LLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR---R-- 105 (222)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC---c--
Confidence 6799999999999999995 47999999988765331 3458999999999999999999998754321 0
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHh-CCcccccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKIL-GLDICADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~l-gL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
.+. ...++.+++.+ +|.+..|+.+ +.||||||||++|||+++.
T Consensus 106 -------~~~------------------------~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 106 -------AKR------------------------KARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMS 149 (222)
T ss_pred -------hhH------------------------HHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhc
Confidence 000 00134556666 4766667654 4599999999999999998
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
+| ++++|||||+|||+.+...+++.|+++++ .++|+|++.|.+ .++...+|++++|.+|++++.|+.+++.
T Consensus 150 ~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 150 RP-KLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CC-CEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 87 79999999999999999999999999876 578988887765 4667889999999999999999987754
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=256.68 Aligned_cols=192 Identities=21% Similarity=0.245 Sum_probs=150.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+.. .++.++||+|++.+++.+||+||+.++...... ..
T Consensus 33 l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~ 111 (243)
T TIGR02315 33 IIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKP-TW 111 (243)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhccccccc-ch
Confidence 6799999999999999995 4799999998876421 245689999999999999999999875321100 00
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
..+.. ...++ ....++++++.+||.+..|..+ +.|||||||||+|||+++
T Consensus 112 ~~~~~-~~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~ 161 (243)
T TIGR02315 112 RSLLG-RFSEE------------------------DKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALA 161 (243)
T ss_pred hhhhc-cccHH------------------------HHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHh
Confidence 00000 00000 0112466789999988777654 459999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
.+| +||+|||||+|||+.+...+.+.|++++++.++|+|++.|++. ++...+|++++|.+|++++.|+++++
T Consensus 162 ~~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 162 QQP-DLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred cCC-CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 887 7999999999999999999999999987656889998888654 56688999999999999999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=252.45 Aligned_cols=174 Identities=25% Similarity=0.378 Sum_probs=142.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-------ccceEEeeccccccCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-------~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.... .++.++||+|++.+++.+||+|++.|.+..++..
T Consensus 35 l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~- 113 (218)
T cd03255 35 IVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVP- 113 (218)
T ss_pred EEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCC-
Confidence 6799999999999999995 4799999999876432 1346899999999999999999999976543210
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~el 153 (1218)
..+. ...++.+++.+||.+..|..+ +.|||||||||+|||++
T Consensus 114 ---------~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al 155 (218)
T cd03255 114 ---------KKER------------------------RERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARAL 155 (218)
T ss_pred ---------HHHH------------------------HHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHH
Confidence 0000 112467799999988777765 45999999999999999
Q ss_pred hhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcE
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKI 219 (1218)
Q Consensus 154 l~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~i 219 (1218)
+.+| +||+|||||+|||+.+...+.+.|++++++.++|||++-|++.. + ..+|++++|.+|++
T Consensus 156 ~~~p-~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~G~i 218 (218)
T cd03255 156 ANDP-KIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRDGKI 218 (218)
T ss_pred ccCC-CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeCCcC
Confidence 9887 79999999999999999999999999986568899999888753 4 48999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=259.17 Aligned_cols=184 Identities=20% Similarity=0.287 Sum_probs=151.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeecccc-ccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D-~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+.. .++.++||+|++ ..++..||+||+.|..+..+.
T Consensus 38 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~----- 112 (279)
T PRK13650 38 IIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGI----- 112 (279)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCC-----
Confidence 6799999999999999995 5799999999886432 345689999996 467788999999987543211
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
++++. ...++++++.+||++-.|..+ +.||||||||++|||+++.+
T Consensus 113 -----~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 113 -----PHEEM------------------------KERVNEALELVGMQDFKEREP-----ARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred -----CHHHH------------------------HHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcC
Confidence 01110 112567899999998878765 45999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
| +||+|||||+|||+.+...+++.|+++++..|+|||++.|++. ++ ..+|+|++|.+|+++..|++++..
T Consensus 159 p-~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 159 P-KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred C-CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 8 7999999999999999999999999998766899999988865 34 579999999999999999988765
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=263.43 Aligned_cols=187 Identities=23% Similarity=0.266 Sum_probs=150.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeecccc--ccCCCCCHHHHHHHHhhccCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVG 72 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D--~l~~~LTVrEtL~Faa~lk~~~ 72 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+.. .++.++||+|++ .++|.+||+|++.+..+....+
T Consensus 52 lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~ 131 (331)
T PRK15079 52 VVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPK 131 (331)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccC
Confidence 6799999999999999984 5799999999987542 245689999997 6899999999999865432100
Q ss_pred CchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc-ccccceecCCcCCcCCccccchhhHHH
Q 000937 73 SRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD-ICADTLVGDAIRRGISGGQKRRLTTGR 151 (1218)
Q Consensus 73 ~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGeKrRvSIA~ 151 (1218)
.++++. ...+.++++.+||. +..|... ..|||||||||+|||
T Consensus 132 --------~~~~~~------------------------~~~~~~~l~~vgl~~~~~~~~p-----~~LSgG~~QRv~iAr 174 (331)
T PRK15079 132 --------LSRQEV------------------------KDRVKAMMLKVGLLPNLINRYP-----HEFSGGQCQRIGIAR 174 (331)
T ss_pred --------CCHHHH------------------------HHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHHHHHHHH
Confidence 011111 11246778999994 4556544 569999999999999
Q ss_pred HHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 152 EMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 152 ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
+++.+| ++|++||||+|||..+..++++.|+++.++.+.|+|++.|.. ..+...+|+|++|.+|++++.|+.+++.
T Consensus 175 AL~~~P-~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 175 ALILEP-KLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred HHhcCC-CEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999988 899999999999999999999999999876688888887643 4566789999999999999999998876
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=252.73 Aligned_cols=185 Identities=24% Similarity=0.305 Sum_probs=150.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc--ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV--PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~--~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
+.|++|||||||.+...|. .+|+|++||.++.+.. .++.++||+|++.+++.+||+|++.+.+..+..
T Consensus 32 i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~------- 104 (236)
T TIGR03864 32 LLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGL------- 104 (236)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCC-------
Confidence 6799999999999999995 4799999999876432 224689999999888999999999886543210
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
...+. ...++++++.+||++..|+.++ .||||||||++|||+++.+|
T Consensus 105 ---~~~~~------------------------~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p- 151 (236)
T TIGR03864 105 ---SRAEA------------------------RERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRP- 151 (236)
T ss_pred ---CHHHH------------------------HHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 00000 0124667889999888887664 59999999999999999888
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++|||||+|||+.+...+.+.|+++++..|+|+|++-|.+.. + ..+|++++|.+|++++.|+++++..
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 79999999999999999999999999986568899998887763 3 4599999999999999999887764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=250.36 Aligned_cols=174 Identities=26% Similarity=0.332 Sum_probs=144.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
+.|++|||||||.+...|. .+|+|.+||.++.+. ..++.++||+|++.+++.+||+|++.+.......
T Consensus 31 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-------- 102 (208)
T cd03268 31 FLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI-------- 102 (208)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC--------
Confidence 6799999999999999985 589999999987542 2245689999999999999999999886532210
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
. +..++++++.+||.+..|..++ .|||||||||+||++++.+| +
T Consensus 103 ---~---------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p-~ 146 (208)
T cd03268 103 ---R---------------------------KKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNP-D 146 (208)
T ss_pred ---c---------------------------HHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHHHHHHHHHhcCC-C
Confidence 0 0124667899999888777654 59999999999999998887 7
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
+++|||||+|||+.+...+.+.|+++++ .++|+|++.|++. ++...+|++++|.+|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999876 5789888877654 566789999999999999876
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-26 Score=254.97 Aligned_cols=183 Identities=22% Similarity=0.321 Sum_probs=147.5
Q ss_pred CCCCCCCCcchhhcccceeE--------EEEEEECCcccCCc-----cccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000937 4 LNDRIGFGLSVISWFCTGLV--------TGEVSYNGYKLEEF-----VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQG 70 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~~--------~G~V~~nG~~~~~~-----~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~ 70 (1218)
|.|++|||||||.+...|.. +|+|++||.++.+. ..++.++||+|+..+++ +||+||+.+..+.++
T Consensus 32 i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~ 110 (247)
T TIGR00972 32 LIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG 110 (247)
T ss_pred EECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC
Confidence 67999999999999999854 89999999987642 12456899999998898 999999998754331
Q ss_pred CCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc----ccccceecCCcCCcCCccccch
Q 000937 71 VGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD----ICADTLVGDAIRRGISGGQKRR 146 (1218)
Q Consensus 71 ~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~----~~~dT~VG~~~~rGLSGGeKrR 146 (1218)
.. +.++. ...+..+++.+||. +..|..+ +.||||||||
T Consensus 111 ~~---------~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~qr 152 (247)
T TIGR00972 111 IK---------DKKEL------------------------DEIVEESLKKAALWDEVKDRLHDSA-----LGLSGGQQQR 152 (247)
T ss_pred CC---------CHHHH------------------------HHHHHHHHHHcCCCcchhhHhhCCc-----ccCCHHHHHH
Confidence 00 00010 01246678899997 5555544 4699999999
Q ss_pred hhHHHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChh
Q 000937 147 LTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRE 226 (1218)
Q Consensus 147 vSIA~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~ 226 (1218)
++|||+++.+| ++++|||||+|||+.+...+.+.|+++++ ++|+|++-|++. ++...+|++++|++|+++++|+++
T Consensus 153 v~laral~~~p-~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 228 (247)
T TIGR00972 153 LCIARALAVEP-EVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTE 228 (247)
T ss_pred HHHHHHHhcCC-CEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999887 89999999999999999999999999875 378888877544 667889999999999999999988
Q ss_pred hHH
Q 000937 227 SVL 229 (1218)
Q Consensus 227 ~l~ 229 (1218)
++.
T Consensus 229 ~~~ 231 (247)
T TIGR00972 229 QIF 231 (247)
T ss_pred HHH
Confidence 764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-26 Score=251.82 Aligned_cols=186 Identities=17% Similarity=0.286 Sum_probs=152.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.... .++.++||+|++.+++.+||+||+.+...... . .
T Consensus 30 l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~----~-- 102 (232)
T PRK10771 30 ILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL-K----L-- 102 (232)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc-C----C--
Confidence 6799999999999999995 5799999999876432 23468999999999999999999988532110 0 0
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
.+.. +..++++++.+||++..|+.++ .||||||||++|||+++.+| +
T Consensus 103 ---~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p-~ 149 (232)
T PRK10771 103 ---NAAQ------------------------REKLHAIARQMGIEDLLARLPG-----QLSGGQRQRVALARCLVREQ-P 149 (232)
T ss_pred ---CHHH------------------------HHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCC-C
Confidence 0000 1125677999999988888764 59999999999999999888 7
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+++|||||+|||..+...+.+.|+++++..|+|+|++-|++. ++.+.+|++++|.+|++++.|+.+++.+
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999988656889998877654 6678899999999999999999887663
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-27 Score=291.76 Aligned_cols=188 Identities=23% Similarity=0.370 Sum_probs=153.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ .++.++||+|++.+|+. |+||||.+...-
T Consensus 363 IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~--------- 432 (571)
T TIGR02203 363 LVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRTE--------- 432 (571)
T ss_pred EECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCCC---------
Confidence 4689999999999999995 4699999999988654 35678999999988865 999999885210
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
+ .++++++.+++.+..+.++.+ |++..||.||+. .+.||||||||++|||+++.+|
T Consensus 433 --~----------~~~~~i~~~l~~~~l~~~i~~-----------lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~ 488 (571)
T TIGR02203 433 --Q----------ADRAEIERALAAAYAQDFVDK-----------LPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDA 488 (571)
T ss_pred --C----------CCHHHHHHHHHHcChHHHHHh-----------CcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCC
Confidence 0 112345556666555544443 445569999986 4679999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++||||||+||+.++..+.+.|++.+ .++|+|+.-|+| +..+.+|+|++|++|+++..|+++++++
T Consensus 489 -~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 489 -PILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred -CEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 7999999999999999999999999875 357777776766 6789999999999999999999999874
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-26 Score=253.62 Aligned_cols=184 Identities=24% Similarity=0.341 Sum_probs=150.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-----cccceEEeeccccccCCCCCHHHHHHHHhh-ccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-----VPQKLSAYVSQYDLHIPEMTVRETLDFSTY-CQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-----~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~-lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+. ..++.++||+|++.+++.+||+|++.|+.. .++.
T Consensus 32 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~--- 108 (240)
T PRK09493 32 IIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGA--- 108 (240)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCC---
Confidence 6799999999999999995 479999999987642 224568999999999999999999988642 1110
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
..++. ...++++++.+||++..|..+ +.||||||||++|||+++
T Consensus 109 -------~~~~~------------------------~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 109 -------SKEEA------------------------EKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALA 152 (240)
T ss_pred -------CHHHH------------------------HHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHh
Confidence 00000 112467889999987777655 469999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
.+| +|++|||||+|||..+...+.+.|+++++ .++|+|++.|++. ++...+|++++|.+|++++.|+.+++.
T Consensus 153 ~~p-~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 153 VKP-KLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred cCC-CEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 888 79999999999999999999999999875 4789888887654 567789999999999999999988765
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-26 Score=256.44 Aligned_cols=185 Identities=23% Similarity=0.317 Sum_probs=152.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeecccc-ccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D-~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+.. .++.++||+|++ ..++.+||+||+.|..+..+.
T Consensus 38 i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~----- 112 (279)
T PRK13635 38 IVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV----- 112 (279)
T ss_pred EECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCC-----
Confidence 6799999999999999995 5799999999886532 245689999997 467778999999987543210
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
..++. ...++++++.+||.+..++.++ .|||||||||+|||+++.+
T Consensus 113 -----~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 113 -----PREEM------------------------VERVDQALRQVGMEDFLNREPH-----RLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred -----CHHHH------------------------HHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcC
Confidence 01110 1135778899999988887764 5999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
| +||+|||||+|||+.+...+++.|+++++..|+||+++.|++.. + ..+|++++|.+|++++.|+.+++..
T Consensus 159 p-~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 159 P-DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred C-CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHhc
Confidence 8 89999999999999999999999999987668999999888653 3 4699999999999999999887763
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-26 Score=258.31 Aligned_cols=186 Identities=21% Similarity=0.283 Sum_probs=149.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCC--c---cccceEEeeccccc-cCCCCCHHHHHHHHhhccCCCCc
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEE--F---VPQKLSAYVSQYDL-HIPEMTVRETLDFSTYCQGVGSR 74 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~--~---~~~~~~~yV~Q~D~-l~~~LTVrEtL~Faa~lk~~~~~ 74 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.. . ..++.++||+|++. .+...||+|++.|.....+.
T Consensus 37 i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~--- 113 (283)
T PRK13636 37 ILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL--- 113 (283)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCC---
Confidence 6799999999999999995 57999999998741 1 23456899999863 33457999999986432210
Q ss_pred hhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHh
Q 000937 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 75 ~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell 154 (1218)
+.++. ...++++++.+||.+..|+.+ +.||||||||++|||+++
T Consensus 114 -------~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~ 157 (283)
T PRK13636 114 -------PEDEV------------------------RKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLV 157 (283)
T ss_pred -------CHHHH------------------------HHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHH
Confidence 11111 012577899999998877765 459999999999999999
Q ss_pred hCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
.+| +||+|||||+|||+.+...+.+.|+++++..|+||+++-|++. ++...+|++++|++|++++.|+++++..
T Consensus 158 ~~p-~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 158 MEP-KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred cCC-CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 888 7999999999999999999999999998755889998877544 4566899999999999999999988764
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-26 Score=255.95 Aligned_cols=183 Identities=20% Similarity=0.235 Sum_probs=147.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeecccc-ccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYD-LHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D-~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+.. .++.++||+|++ ..++..||+|++.|..+..+.
T Consensus 36 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~----- 110 (274)
T PRK13647 36 LLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGL----- 110 (274)
T ss_pred EECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCC-----
Confidence 6799999999999999995 5799999999886432 235689999986 245568999999986442210
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
++.+. ...++++++.+||.+..|..++ .|||||||||+|||+++.+
T Consensus 111 -----~~~~~------------------------~~~~~~~l~~~~L~~~~~~~~~-----~LSgG~~qrv~laraL~~~ 156 (274)
T PRK13647 111 -----DKDEV------------------------ERRVEEALKAVRMWDFRDKPPY-----HLSYGQKKRVAIAGVLAMD 156 (274)
T ss_pred -----CHHHH------------------------HHHHHHHHHHCCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcC
Confidence 01110 0124677999999988887764 5999999999999999988
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
| ++|+|||||+|||+.+...+++.|+++++ .|+||+++-|.+. ++.+.+|+|++|++|++++.|+++++
T Consensus 157 p-~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 157 P-DVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred C-CEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 8 89999999999999999999999999986 4889888877643 56688999999999999999998653
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-26 Score=286.19 Aligned_cols=188 Identities=25% Similarity=0.366 Sum_probs=151.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ .++.++||+|++.+|+. |++||+.+... .
T Consensus 349 ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~----~----- 418 (544)
T TIGR01842 349 IIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE----N----- 418 (544)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC----C-----
Confidence 5689999999999999984 5799999999987654 45678999999999976 99999985321 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
. .++++.++++.+.++++... |++..||.+|+. .+.||||||||++|||+++.+|
T Consensus 419 ---~----------~~~~~~~~~~~~~~~~~i~~-----------l~~gl~t~~~~~-g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 419 ---A----------DPEKIIEAAKLAGVHELILR-----------LPDGYDTVIGPG-GATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred ---C----------CHHHHHHHHHHhChHHHHHh-----------CccccccccCCC-cCCCCHHHHHHHHHHHHHhcCC
Confidence 0 01234445555544433332 345569999875 4669999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+||+|||||||||+.++..+.+.|+++.. .++|+|++.|+++ +.+.+|+|++|++|++++.|+++++.+
T Consensus 474 -~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 474 -KLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred -CEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 79999999999999999999999998853 4788888888774 678899999999999999999998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-26 Score=253.33 Aligned_cols=185 Identities=23% Similarity=0.318 Sum_probs=147.7
Q ss_pred CCCCCCCCcchhhcccceeE--------EEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000937 4 LNDRIGFGLSVISWFCTGLV--------TGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVG 72 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~~--------~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~ 72 (1218)
|.|++|||||||.+...|.. +|+|++||.++.+.. .++.++||+|++.+++.+||+||+.+..+.+...
T Consensus 34 i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~ 113 (250)
T PRK14247 34 LMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLV 113 (250)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcccc
Confidence 67999999999999999963 899999999876432 3456899999998899999999999875432100
Q ss_pred CchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcc----cccceecCCcCCcCCccccchhh
Q 000937 73 SRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDI----CADTLVGDAIRRGISGGQKRRLT 148 (1218)
Q Consensus 73 ~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~----~~dT~VG~~~~rGLSGGeKrRvS 148 (1218)
. +.++. ...+.++++.+||.+ ..|+.+ +.|||||||||+
T Consensus 114 ~--------~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~qrv~ 156 (250)
T PRK14247 114 K--------SKKEL------------------------QERVRWALEKAQLWDEVKDRLDAPA-----GKLSGGQQQRLC 156 (250)
T ss_pred C--------CHHHH------------------------HHHHHHHHHHcCCCcchhhhhcCCc-----ccCCHHHHHHHH
Confidence 0 00000 012466788899864 334443 569999999999
Q ss_pred HHHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 149 TGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 149 IA~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
|||+++.+| +|++|||||+|||+.+...+.+.|+++++ ++|+|++.|++. ++...+|++++|++|++++.|+++++
T Consensus 157 laral~~~p-~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 157 IARALAFQP-EVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHhcCC-CEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999998877 89999999999999999999999999863 688888887654 66788999999999999999998877
Q ss_pred H
Q 000937 229 L 229 (1218)
Q Consensus 229 ~ 229 (1218)
.
T Consensus 233 ~ 233 (250)
T PRK14247 233 F 233 (250)
T ss_pred H
Confidence 5
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-26 Score=245.02 Aligned_cols=157 Identities=36% Similarity=0.647 Sum_probs=135.3
Q ss_pred CCCCCCCCcchhhccccee------EEEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCCCch
Q 000937 4 LNDRIGFGLSVISWFCTGL------VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRA 75 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~------~~G~V~~nG~~~~~~--~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~ 75 (1218)
|.|++|||||||.+...|. .+|+|++||.++.+. ..++.++||+|++.+++.+||+||+.+++++.
T Consensus 38 i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------ 111 (202)
T cd03233 38 VLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------ 111 (202)
T ss_pred EECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc------
Confidence 6799999999999999995 379999999987643 23556899999999999999999998863210
Q ss_pred hhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhh
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 76 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~ 155 (1218)
.|. ..+.||||||||++||++++.
T Consensus 112 ---------------------------------------------------~~~-----~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 112 ---------------------------------------------------GNE-----FVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ---------------------------------------------------ccc-----chhhCCHHHHHHHHHHHHHhh
Confidence 121 235699999999999999998
Q ss_pred CCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 156 ~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
+| ++++|||||+|||+.+...+++.++++++..++|+|++.||+..++.+.+|++++|++|++++.|
T Consensus 136 ~p-~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RA-SVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CC-CEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 88 79999999999999999999999999987557788888898888999999999999999999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-26 Score=248.48 Aligned_cols=179 Identities=20% Similarity=0.292 Sum_probs=145.8
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||||.+...|. .+|+|++||.++.... .++.++||+|++.+++.+||+||+.++......
T Consensus 29 l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-------- 100 (211)
T cd03298 29 IVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK-------- 100 (211)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC--------
Confidence 6799999999999999984 5799999999876432 245689999999999999999999886432100
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
..+ +. +..++++++.+||.+..|+.+ +.||||||||++|||+++.+| +
T Consensus 101 -~~~-~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p-~ 148 (211)
T cd03298 101 -LTA-ED------------------------RQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDK-P 148 (211)
T ss_pred -ccH-HH------------------------HHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCC-C
Confidence 000 00 112467899999988888765 469999999999999999887 8
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
+++|||||+|||..+...+++.|++++++.++|+|++-|++ .++-+.+|++++|.+|++++.|
T Consensus 149 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 149 VLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999865688988887654 4666889999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-26 Score=267.79 Aligned_cols=188 Identities=21% Similarity=0.311 Sum_probs=153.3
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+.. .++.++||+|+..+++.+||+|++.+...-... . .
T Consensus 34 liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~--~--~ 109 (402)
T PRK09536 34 LVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS--R--F 109 (402)
T ss_pred EECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcc--c--c
Confidence 6799999999999999994 4899999999887532 345689999999998999999999985321100 0 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
. ..+. + ....++++++.+||.+-.|..+ +.|||||||||.|||+|+.+|
T Consensus 110 ~-~~~~-~------------------------~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 110 D-TWTE-T------------------------DRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred c-CCCH-H------------------------HHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCC
Confidence 0 0000 0 0123578899999998888765 459999999999999999888
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
+||+|||||+|||+.+..++++.|+++++ .|+|||++.|. ..++.+.+|++++|++|++++.|++++++
T Consensus 159 -~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHd-l~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 159 -PVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHD-LDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred -CEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECC-HHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 79999999999999999999999999986 58899998875 44677899999999999999999998765
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-26 Score=259.34 Aligned_cols=185 Identities=22% Similarity=0.248 Sum_probs=149.4
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-------cccceEEeecccc--ccCCCCCHHHHHHHHhhccCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-------VPQKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGV 71 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-------~~~~~~~yV~Q~D--~l~~~LTVrEtL~Faa~lk~~ 71 (1218)
|.|++|||||||.+...|. .+|+|++||.++... ..++.++||+|++ .+++ .||+|++.|.....+.
T Consensus 38 i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~ 116 (286)
T PRK13646 38 IVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKM 116 (286)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCC
Confidence 6799999999999999995 469999999987532 2355789999985 4665 5999999986542210
Q ss_pred CCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc-ccccceecCCcCCcCCccccchhhHH
Q 000937 72 GSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD-ICADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 72 ~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
+.++. ...++++++.+||. +..|+.+ +.|||||||||+||
T Consensus 117 ----------~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~la 157 (286)
T PRK13646 117 ----------NLDEV------------------------KNYAHRLLMDLGFSRDVMSQSP-----FQMSGGQMRKIAIV 157 (286)
T ss_pred ----------CHHHH------------------------HHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHH
Confidence 01110 01246778999997 6777654 46999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
|+++.+| +||+|||||+|||+.+...+.+.|+++++..|+|||++.|++. ++...+|+|++|++|++++.|+++++..
T Consensus 158 raL~~~p-~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 158 SILAMNP-DIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHhCC-CEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999888 8999999999999999999999999998766889999877654 5678899999999999999999887653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-26 Score=248.62 Aligned_cols=177 Identities=23% Similarity=0.400 Sum_probs=144.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc--ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV--PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~--~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~ 78 (1218)
|.|++|||||||.+...|. .+|+|.+||.++.+.. .++.++||+|++.+++.+||+|++.+....++..
T Consensus 30 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~------ 103 (211)
T cd03264 30 LLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP------ 103 (211)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC------
Confidence 6799999999999999984 5799999998876432 3456899999999999999999999865433110
Q ss_pred hhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCc
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~ 158 (1218)
+.+. ...++.+++.+||.+..|+.++ .|||||||||+|||+++.+|
T Consensus 104 ----~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p- 149 (211)
T cd03264 104 ----SKEV------------------------KARVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDP- 149 (211)
T ss_pred ----HHHH------------------------HHHHHHHHHHCCCHHHHhCchh-----hCCHHHHHHHHHHHHHhcCC-
Confidence 0000 0124677899999988887664 59999999999999999887
Q ss_pred eEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEec
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHG 223 (1218)
Q Consensus 159 ~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G 223 (1218)
++++|||||+|||+.+...+.+.|+++++ ++|+|++-|++. ++...+|++++|.+|++++.|
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 150 SILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 89999999999999999999999999875 478888766543 566789999999999999876
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-26 Score=249.25 Aligned_cols=186 Identities=24% Similarity=0.357 Sum_probs=153.1
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~-~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~ 79 (1218)
|.|++|||||+|.+...|. .+|+|+++|.++.+.. .++.++||+|++.+++.+||+|++.++....+..
T Consensus 30 i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~------- 102 (235)
T cd03299 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVD------- 102 (235)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCC-------
Confidence 6799999999999999994 5799999999886532 2456899999999999999999999864332100
Q ss_pred hhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCce
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~ 159 (1218)
..+. ...+++.++.+||.+..++.+ +.||||||||++|||+++.+| +
T Consensus 103 ---~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p-~ 149 (235)
T cd03299 103 ---KKEI------------------------ERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNP-K 149 (235)
T ss_pred ---HHHH------------------------HHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCC-C
Confidence 0000 012356788999988888776 459999999999999999988 7
Q ss_pred EEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 160 ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+++|||||+|||+.+...+.+.|++++...++|++++.|++ .++...+|++++|++|++++.|+++++..
T Consensus 150 llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 150 ILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999998765588999998876 45677899999999999999999887653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-26 Score=249.87 Aligned_cols=185 Identities=21% Similarity=0.265 Sum_probs=148.6
Q ss_pred CCCCCCCCcchhhccccee-------EEEEEEECCcccCCcccc-ceEEeeccccc--cCCCCCHHHHHHHHhhccCCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL-------VTGEVSYNGYKLEEFVPQ-KLSAYVSQYDL--HIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~-------~~G~V~~nG~~~~~~~~~-~~~~yV~Q~D~--l~~~LTVrEtL~Faa~lk~~~~ 73 (1218)
|.|++|||||||.+...|. .+|+|++||.++.....+ +.++||+|++. +.+.+|++|++.+.....+..
T Consensus 17 i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~- 95 (230)
T TIGR02770 17 LVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKL- 95 (230)
T ss_pred EECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCcc-
Confidence 6799999999999999994 489999999988654332 46899999974 567899999998764322100
Q ss_pred chhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcc---cccceecCCcCCcCCccccchhhHH
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDI---CADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 74 ~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~---~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
. .+. ...++++++.+||.+ ..+..+ +.|||||||||+||
T Consensus 96 --------~-~~~------------------------~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~la 137 (230)
T TIGR02770 96 --------S-KQA------------------------RALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIA 137 (230)
T ss_pred --------H-HHH------------------------HHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHH
Confidence 0 000 112567899999984 344443 45999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
|+++.+| +||+|||||+|||..+...+.+.|++++++.++|||++-|++. ++...+|++++|.+|++++.|+++++.
T Consensus 138 ral~~~p-~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 138 LALLLEP-PFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHhcCC-CEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999888 7999999999999999999999999998656889998877655 677889999999999999999988775
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-26 Score=287.31 Aligned_cols=187 Identities=23% Similarity=0.331 Sum_probs=151.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~---~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~ 77 (1218)
+.|++|||||||.+...|. .+|+|++||.++++.+ +++.++||+|++.+|+. |++||+.+... .
T Consensus 346 ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~----~----- 415 (569)
T PRK10789 346 ICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP----D----- 415 (569)
T ss_pred EECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC----C-----
Confidence 5799999999999999984 5799999999987653 35678999999998875 99999988521 0
Q ss_pred hhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCC
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p 157 (1218)
. ++++++.+++.+..+.++ ..|++..||.+|+. ...||||||||++|||+++.+|
T Consensus 416 ---~----------~~~~~~~~~~~~~l~~~i-----------~~lp~gl~t~~~~~-g~~LSgGq~qRi~lARall~~~ 470 (569)
T PRK10789 416 ---A----------TQQEIEHVARLASVHDDI-----------LRLPQGYDTEVGER-GVMLSGGQKQRISIARALLLNA 470 (569)
T ss_pred ---C----------CHHHHHHHHHHcCCHHHH-----------HhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCC
Confidence 0 112234444444333322 24566779999985 4569999999999999999988
Q ss_pred ceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+|++|||||||||+.++..+++.|+++. .++|+|++.|++ ++.+.+|+|++|++|+++++|+++++.+
T Consensus 471 -~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~--~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 471 -EILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRL--SALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred -CEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--hHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 7999999999999999999999999875 478888888876 4778899999999999999999999874
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-27 Score=227.10 Aligned_cols=195 Identities=26% Similarity=0.413 Sum_probs=165.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCEeCcc---ccccceEEEeccCCCCCCCCCHH
Q 000937 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITIE 721 (1218)
Q Consensus 645 iL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 721 (1218)
-|-.+|+++..||+.-++|||||||||||..++|+.+. +|+|.++|.+... ....|..+|..|+..-...+.|.
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~---sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~ 90 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW 90 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC---CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhh
Confidence 36789999999999999999999999999999998764 8999999998643 23456678999988777788998
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-----CC--cEEEEe
Q 000937 722 ESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVA-----NP--SIIFMD 794 (1218)
Q Consensus 722 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~LSgGerqRv~ia~~L~~-----~p--~llllD 794 (1218)
..+... . +.+++...++++.+.+++++...+.+ ..|||||-|||-+|...+. || ++|+||
T Consensus 91 ~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD 157 (248)
T COG4138 91 HYLTLH----Q----PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD 157 (248)
T ss_pred hhhhhc----C----chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEec
Confidence 887642 2 23456667888888999886665543 5899999999999987664 44 699999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEecCCEEEEEcCCCC
Q 000937 795 EPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 795 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~~G~~~~~g~~~~ 857 (1218)
||.++||...+..+-.+|.+++.+|++||++.||.+ ...+.+|++.+++ .|++...|..++
T Consensus 158 EP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~-rG~l~~~G~~~e 218 (248)
T COG4138 158 EPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-RGKLLASGRREE 218 (248)
T ss_pred CCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHh-cCeEEeecchhh
Confidence 999999999999999999999999999999999998 6788999999998 499999998765
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-26 Score=251.48 Aligned_cols=185 Identities=18% Similarity=0.327 Sum_probs=150.7
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV----PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRAD 76 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~----~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~ 76 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.... .++.++||+|++.+++.+||+||+.+..+....
T Consensus 34 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~----- 108 (241)
T PRK10895 34 LLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDD----- 108 (241)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccc-----
Confidence 6799999999999999995 5799999999876432 245689999999999999999999886543210
Q ss_pred hhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhC
Q 000937 77 ILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156 (1218)
Q Consensus 77 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~ 156 (1218)
....+. ...++.+++.+||.+..|..+ +.|||||||||+|||+++.+
T Consensus 109 ----~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~ 155 (241)
T PRK10895 109 ----LSAEQR------------------------EDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAAN 155 (241)
T ss_pred ----cCHHHH------------------------HHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHHHHHHHHHhcC
Confidence 000000 112466789999987766654 46999999999999999888
Q ss_pred CceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 157 p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
| ++|+|||||+|||+.+...+.+.++++++ .|+|+|++-|++ .++...+|++++|.+|++++.|+++++.
T Consensus 156 p-~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 156 P-KFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred C-CEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 7 89999999999999999999999999875 578988887765 4788899999999999999999988764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-26 Score=253.13 Aligned_cols=184 Identities=21% Similarity=0.292 Sum_probs=149.0
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCc-----------cccceEEeeccccccCCCCCHHHHHHHHhhc-
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF-----------VPQKLSAYVSQYDLHIPEMTVRETLDFSTYC- 68 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~-----------~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~l- 68 (1218)
|.|++|||||||.+...|. .+|+|.++|.++... ..++.++||+|++.+++.+||+||+.++...
T Consensus 34 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (250)
T PRK11264 34 IIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV 113 (250)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh
Confidence 6799999999999999995 479999999887531 1245689999999999999999999885421
Q ss_pred cCCCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhh
Q 000937 69 QGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLT 148 (1218)
Q Consensus 69 k~~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvS 148 (1218)
+.. ...+. ...+..+++.+||.+..|+.+ +.|||||||||+
T Consensus 114 ~~~----------~~~~~------------------------~~~~~~~l~~~gl~~~~~~~~-----~~LS~Gq~qrv~ 154 (250)
T PRK11264 114 KGE----------PKEEA------------------------TARARELLAKVGLAGKETSYP-----RRLSGGQQQRVA 154 (250)
T ss_pred cCC----------CHHHH------------------------HHHHHHHHHHcCCcchhhCCh-----hhCChHHHHHHH
Confidence 110 00000 012456788999988777654 469999999999
Q ss_pred HHHHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhH
Q 000937 149 TGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESV 228 (1218)
Q Consensus 149 IA~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l 228 (1218)
|||+++.+| +||+|||||+|||+.+...+.+.|+++++ .|+|+|++-|.+. ++...+|++++|.+|++++.|+++++
T Consensus 155 la~al~~~p-~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 155 IARALAMRP-EVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred HHHHHhcCC-CEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999887 79999999999999999999999999875 4788888877654 67788999999999999999998876
Q ss_pred H
Q 000937 229 L 229 (1218)
Q Consensus 229 ~ 229 (1218)
.
T Consensus 232 ~ 232 (250)
T PRK11264 232 F 232 (250)
T ss_pred h
Confidence 4
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-26 Score=259.43 Aligned_cols=187 Identities=21% Similarity=0.288 Sum_probs=151.2
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCcc------ccceEEeecccc--ccCCCCCHHHHHHHHhhccCCC
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV------PQKLSAYVSQYD--LHIPEMTVRETLDFSTYCQGVG 72 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~------~~~~~~yV~Q~D--~l~~~LTVrEtL~Faa~lk~~~ 72 (1218)
|.|++|||||||.+...|. .+|+|+++|.++.+.. .++.++||+|++ .+.|.+||.+++.+......
T Consensus 46 IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~-- 123 (327)
T PRK11308 46 VVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT-- 123 (327)
T ss_pred EECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--
Confidence 6799999999999999995 4799999999886542 245689999997 68999999999987654321
Q ss_pred CchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCc-ccccceecCCcCCcCCccccchhhHHH
Q 000937 73 SRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLD-ICADTLVGDAIRRGISGGQKRRLTTGR 151 (1218)
Q Consensus 73 ~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~-~~~dT~VG~~~~rGLSGGeKrRvSIA~ 151 (1218)
.+.+++. ...+.++++.+||. +..|..+ +.|||||||||+|||
T Consensus 124 -------~~~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~p-----~~LSgGq~QRv~iAr 167 (327)
T PRK11308 124 -------SLSAAER------------------------REKALAMMAKVGLRPEHYDRYP-----HMFSGGQRQRIAIAR 167 (327)
T ss_pred -------CCCHHHH------------------------HHHHHHHHHHCCCChHHhcCCC-----ccCCHHHHHHHHHHH
Confidence 0011111 11356789999996 3566654 569999999999999
Q ss_pred HHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHHH
Q 000937 152 EMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 152 ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~~ 230 (1218)
+++.+| +||++||||+|||..+..++++.|+++.++.|+|+|++.|. ...+...+|+|++|++|++++.|+.+++.+
T Consensus 168 AL~~~P-~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd-l~~~~~~adrv~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 168 ALMLDP-DVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD-LSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred HHHcCC-CEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999988 89999999999999999999999999987678888887664 335567899999999999999999988864
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-26 Score=259.87 Aligned_cols=187 Identities=19% Similarity=0.245 Sum_probs=147.1
Q ss_pred CCCCCCCCcchhhcccceeE--------EEEEEECCcccCCc-----cccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000937 4 LNDRIGFGLSVISWFCTGLV--------TGEVSYNGYKLEEF-----VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQG 70 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~~--------~G~V~~nG~~~~~~-----~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~ 70 (1218)
+.||+|||||+|.+...|.. +|+|.+||.++.+. ..++.++||+|++.+++ .||+||+.|.....+
T Consensus 113 IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~ 191 (329)
T PRK14257 113 FIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG 191 (329)
T ss_pred EECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC
Confidence 57999999999999999864 89999999998632 34567899999998885 799999998643211
Q ss_pred CCCchhhhhhhhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHH
Q 000937 71 VGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTG 150 (1218)
Q Consensus 71 ~~~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA 150 (1218)
.+.++.. +..+..+++..+|.+..++.++. ....|||||||||+||
T Consensus 192 ----------~~~~~~~-----------------------~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 192 ----------INDRKIL-----------------------EKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQQQRLCIA 237 (329)
T ss_pred ----------CChHHHH-----------------------HHHHHHHHHHcCCcchhhhhhhC-CcccCCHHHHHHHHHH
Confidence 0001100 01134557777776555566654 3466999999999999
Q ss_pred HHHhhCCceEEEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChhhHH
Q 000937 151 REMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 151 ~ell~~p~~ILlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~~l~ 229 (1218)
|+++.+| +||+|||||+|||+.+...+.+.|+++++ ++|+|++.|++. .+...+|+|++|.+|+++++|++.++.
T Consensus 238 RAl~~~p-~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 238 RAIALEP-EVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHhCC-CEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999888 79999999999999999999999999874 578888877643 445669999999999999999999886
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-26 Score=253.10 Aligned_cols=174 Identities=23% Similarity=0.280 Sum_probs=145.5
Q ss_pred CCCCCCCCcchhhccccee---EEEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCCchhhhhh
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLE 80 (1218)
Q Consensus 4 ~~~~~~~~~~~l~~~~~g~---~~G~V~~nG~~~~~~~~~~~~~yV~Q~D~l~~~LTVrEtL~Faa~lk~~~~~~~~~~~ 80 (1218)
|.|++|||||||.+...|. .+|+|.++|.++.+ .++.++||+|++.+++.+||+||+.+....
T Consensus 43 I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~------------ 108 (257)
T PRK11247 43 VVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVIDNVGLGLKG------------ 108 (257)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHHHHHhcccc------------
Confidence 6799999999999999995 47999999987653 355689999999999999999999884210
Q ss_pred hhhhhHhhhcCCCCChhhHHHHhHhhhhhhhhhHHHHHHHhCCcccccceecCCcCCcCCccccchhhHHHHHhhCCceE
Q 000937 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKA 160 (1218)
Q Consensus 81 ~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~vl~~lgL~~~~dT~VG~~~~rGLSGGeKrRvSIA~ell~~p~~I 160 (1218)
..+ ..++.+++.+||.+..+..+ +.|||||||||+|||+++.+| ++
T Consensus 109 --~~~--------------------------~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~laraL~~~p-~l 154 (257)
T PRK11247 109 --QWR--------------------------DAALQALAAVGLADRANEWP-----AALSGGQKQRVALARALIHRP-GL 154 (257)
T ss_pred --hHH--------------------------HHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCC-CE
Confidence 000 02356788999988777665 459999999999999999887 79
Q ss_pred EEeeCCCCCcChhhHHHHHHHHHHHHHhcCCEEEEEeccCChhHHhccceEEEEcCCcEEEecChh
Q 000937 161 MFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRE 226 (1218)
Q Consensus 161 LlLDEpTSGLDs~sa~~vv~~L~~la~~~g~TiIitihQps~ei~~lFD~IlvL~~G~ivy~G~~~ 226 (1218)
++|||||+|||+.+...+.+.|+++++..++|+|++-|++. ++...+|+|++|.+|++++.|+.+
T Consensus 155 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 155 LLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999987666889888877655 567889999999999999988764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1218 | ||||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-11 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-11 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-11 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 8e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-09 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-09 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-09 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-09 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 7e-09 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 7e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 8e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 6e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-07 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-07 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-07 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-07 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 5e-07 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 6e-07 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 6e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 7e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 9e-07 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 9e-07 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-06 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 1e-06 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 6e-06 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 9e-06 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-06 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 9e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 3e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 4e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 5e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 8e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-04 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 3e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 3e-04 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 4e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 4e-04 |
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1218 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 7e-23 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 8e-09 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-21 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-08 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-20 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-09 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 6e-20 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 4e-05 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 7e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-17 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-12 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-11 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-13 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-12 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-09 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-04 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-08 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 4e-07 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 8e-04 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 6e-07 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-06 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-06 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-05 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-06 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-06 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-06 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 4e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 8e-06 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-05 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-05 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 4e-05 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 6e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-04 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-04 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 8e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 3e-04 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-04 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 4e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 4e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 7e-23
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 16/186 (8%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQE-TFV 702
L ++ + G + L+G +GAGKTT L +++ + +SG + V G ++E V
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 703 RVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
R Y + ++ E L F A +S + V + L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821
V S ++L I L+ NP + +DEPT+GLD A V + +K + G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 822 IVCTIH 827
I+ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 45/219 (20%), Positives = 73/219 (33%), Gaps = 67/219 (30%)
Query: 20 TGLVT---GEVSYNGYKLEE----------FVPQKLSAYVSQYDLHIPEMTVRETLDFST 66
+ L+ G V+ G + E ++P++ AY M E L F
Sbjct: 62 STLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY--------RNMQGIEYLRF-- 111
Query: 67 YCQGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDIC 126
V S E E + + +I GL
Sbjct: 112 ----VAG----FYASSSSEIEEMV------------------------ERATEIAGLGEK 139
Query: 127 ADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLA 186
V S G R+L R ++V P + +D+ T+GLD+ + ++ L+ +
Sbjct: 140 IKDRVS-----TYSKGMVRKLLIARALMVNP-RLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 187 HITDATILIS--LLQPSPETFHLFDDIILMAEGKILYHG 223
TIL+S + E L D I L+ G I+ G
Sbjct: 194 Q-EGLTILVSSHNM---LEVEFLCDRIALIHNGTIVETG 228
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 3e-21
Identities = 44/208 (21%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L+ +T T+ G + G +G GKTTLL ++ + G EI NG P I + +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG----EIIYNGVP-ITKVKGK 79
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763
+ + + I I++E+ L A L K + + L+++E+ +K+
Sbjct: 80 I-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 130
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA-DTGRTI 822
+ LS +R+ + L+ N I +D+P +D + V++++ + + G I
Sbjct: 131 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 823 VCTIHQPSIDIFESFDELILLKTGGRII 850
+ + D L I
Sbjct: 188 ISSRE-----ELSYCDVNENLHKYSTKI 210
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 26/210 (12%), Positives = 59/210 (28%), Gaps = 65/210 (30%)
Query: 20 TGLVT---GEVSYNGYKLEE------FVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQG 70
+ + GE+ YNG + + F+P+++ +++V + L G
Sbjct: 56 STYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVP--------RKISVEDYLKAVASLYG 107
Query: 71 VGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTL 130
V + + I L+ + + L
Sbjct: 108 V------------KVNKNEI------------------------MDALESVEVLDLKKKL 131
Query: 131 VGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITD 190
+S G RR+ +LV + +D +D + +++ + +
Sbjct: 132 ------GELSQGTIRRVQLASTLLVNA-EIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 184
Query: 191 ATILISLLQPSPETFHLFDDIILMAEGKIL 220
I+ S E D + +
Sbjct: 185 IVIIS-----SREELSYCDVNENLHKYSTK 209
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 1e-20
Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 29/226 (12%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR--KTSGCFKGEIKVNGYP--KIQE 699
+L ++ + G L G++GAGKTTLL++L TSG + + G K+
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG----TVNLFGKMPGKVGY 90
Query: 700 TFVRVS---GYCEQTDIH---SPHITIEE---SLFFSAWLRLAPQINSKTKADCVNHVLK 750
+ V G+ + + + S F + Q + + +LK
Sbjct: 91 SAETVRQHIGFVSH-SLLEKFQEGERVIDVVISGAFKSIGVY--QDIDDEIRNEAHQLLK 147
Query: 751 TIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR 810
+ + + +G LST +++R+ I L+ P ++ +DEP GLD A ++
Sbjct: 148 LVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202
Query: 811 AVKNVADTGR--TIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+ +++D+ ++ H +I +F +++LLK G+ I G
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK-DGQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 118 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQ 177
LK++G+ A +G +S G+K+R+ R ++ P + + +D+ GLD
Sbjct: 146 LKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQP-QVLILDEPAAGLDFIARES 199
Query: 178 IVTCLQHLA--HITDATILIS-LLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229
+++ L L+ + T A I ++ ++ E F I+L+ +G+ + G E +L
Sbjct: 200 LLSILDSLSDSYPTLAMIYVTHFIE---EITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 6e-20
Identities = 48/238 (20%), Positives = 89/238 (37%), Gaps = 38/238 (15%)
Query: 627 DTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFK 686
+ L + + L + L G + A++G +G GK+TLLD+L G +
Sbjct: 2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI--Q 59
Query: 687 GEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESL---------FFSAWLRLAPQIN 737
G+I+V I G+ Q ++ + + F+
Sbjct: 60 GKIEVYQ--SI--------GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKP-------- 101
Query: 738 SKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPT 797
L + L + + + LS QR+ + I + + +I +DEPT
Sbjct: 102 KSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPT 156
Query: 798 TGLDARAAAIVMRAVKNVA-DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+ LD IV+ + ++A T+V T HQP+ + ++ +LL + G
Sbjct: 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLN--KQNFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 23/112 (20%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 118 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQ 177
L L L A +SGGQ++ + R + K + +D+ T+ LD++
Sbjct: 113 LDYLNLTHLAKREFTS-----LSGGQRQLILIAR-AIASECKLILLDEPTSALDLANQDI 166
Query: 178 IVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229
+++ L LA + T++ + QP+ + + + +L+ + + G ++L
Sbjct: 167 VLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQNFKF-GETRNIL 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 7e-19
Identities = 49/224 (21%), Positives = 84/224 (37%), Gaps = 34/224 (15%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ET 700
L ++G +R G + L+G +GAGK+TLL +AG + G I+ G P
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK---GSIQFAGQPLEAWSATK 70
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
Y Q + L L KT+ + +N V + LD
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYL----TLHQHD----KTRTELLNDVAGALALDDKLGR 122
Query: 761 LVGIPGVSGLSTEQRKRLTI-------GVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
+ LS + +R+ + + ++ +DEP LD + + + +
Sbjct: 123 ST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 177
Query: 814 NVADTGRTIVCTIHQPSIDI---FESFDELILLKTGGRIIYSGP 854
++ G IV + H D+ LLK GG+++ SG
Sbjct: 178 ALSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 41/221 (18%), Positives = 87/221 (39%), Gaps = 28/221 (12%)
Query: 638 GLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYPK 696
G ++ L+++ + G ++G +G+GKTTLL ++G SG I +NG
Sbjct: 13 GKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPYSG----NIFINGME- 66
Query: 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
+++ + + + +T+ + ++ L+ D +LK ++L
Sbjct: 67 VRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELK-------GLDRDLFLEMLKALKLG- 118
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
E ++ + LS Q + + L + P I+ +DEP +DA ++ R +K
Sbjct: 119 --EEILRRK-LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY- 174
Query: 817 DTGRTIVCTIHQPSIDIFESF---DELILLKTGGRIIYSGP 854
G+ + H ++ + G R+
Sbjct: 175 --GKEGILVTH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 4e-15
Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 39/187 (20%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKV-----NGYPKI 697
+L+ G + +MG +G GKTTL+ +LAG + G ++ V PK
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKF 426
Query: 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
T LFF ++ Q + V+K + +D I
Sbjct: 427 PGTV--------------------RQLFFK---KIRGQFLNPQFQT---DVVKPLRIDDI 460
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN-VA 816
+ V LS + +R+ I + L I +DEP+ LD+ I + ++ +
Sbjct: 461 IDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL 515
Query: 817 DTGRTIV 823
+T
Sbjct: 516 HNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 4e-12
Identities = 37/192 (19%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPK------I 697
T RPG + L+G +G GK+T L +LAG + G F + K +
Sbjct: 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSEL 152
Query: 698 QETFVRV------SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKT 751
Q F ++ + Q + P L+L + + V +K
Sbjct: 153 QNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM----EKSPEDVKRYIKI 208
Query: 752 IELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
++L+ + + + LS + +R IG+ V + DEP++ LD + +
Sbjct: 209 LQLENVLKR-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQI 263
Query: 812 VKNVADTGRTIV 823
++++ + ++
Sbjct: 264 IRSLLAPTKYVI 275
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 42/233 (18%)
Query: 638 GLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP 695
G + + L++V+ + G + G +G+GK+TLL ++AG TSG ++ +G
Sbjct: 15 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG----DVLYDGER 70
Query: 696 K-IQETFVRVSGYCEQTDIHSPH-----ITIEESLFFSAWLRLAPQINSKTKADCVNHVL 749
K E + G Q P + + + F A + N D V V
Sbjct: 71 KKGYEIRRNI-GIAFQ----YPEDQFFAERVFDEVAF------AVK-NFYPDRDPVPLVK 118
Query: 750 KTIELDGIKESLVGIPGVS-------GLSTEQRKRLTI-GVELVANPSIIFMDEPTTGLD 801
K +E VG+ S LS +++R+ I V +V P I+ +DEP GLD
Sbjct: 119 KAMEF-------VGLDFDSFKDRVPFFLSGGEKRRVAIASV-IVHEPDILILDEPLVGLD 170
Query: 802 ARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
++R V+ G+T++ H + D +++L+ G+ ++ G
Sbjct: 171 REGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLE-KGKKVFDGT 221
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 4e-14
Identities = 36/190 (18%), Positives = 75/190 (39%), Gaps = 24/190 (12%)
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRV 704
+ ++ G++ ++G +G GKTT + +LAG ++ N +
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG---------QLIPNLCEDNDSWDNVI 156
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQ---INSKTKADCVNHVLKTIELDGIKESL 761
+ ++ + ++ + PQ + K V +LK ++ G E +
Sbjct: 157 RAF-RGNELQNYFERLKNGEIRPV---VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEV 212
Query: 762 VGIPG--------VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
V + LS + +R+ I L+ F DEP++ LD R V R ++
Sbjct: 213 VKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272
Query: 814 NVADTGRTIV 823
+A+ G+ ++
Sbjct: 273 RLANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 25/179 (13%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L+ G +R G + ++G +G GKTT + +LAG + +G+++ + V+
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEWDL---------TVA 420
Query: 706 GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765
Y Q T+ E L + ++NS +LK + + + + V
Sbjct: 421 -YKPQYIKAEYEGTVYE-LLSKI---DSSKLNSNFY---KTELLKPLGIIDLYDRNV--- 469
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIV 823
LS + +R+ I L+ + I +DEP+ LD V RA++++ + +T +
Sbjct: 470 --EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-13
Identities = 47/219 (21%), Positives = 83/219 (37%), Gaps = 28/219 (12%)
Query: 611 PFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKT 670
+ + DL S D +M+ + L G + G + ++G +G GKT
Sbjct: 249 EIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKT 308
Query: 671 TLLDVLAGRKTSGCFKGEIKVNG---YPKIQETFVRVSGYCEQTDIHSPHITIEESLFFS 727
T +L G T+ +G + K Q F G +Q + + +++L S
Sbjct: 309 TFARILVGEITA--DEGSVTPEKQILSYKPQRIFPNYDGTVQQY-LENA---SKDALSTS 362
Query: 728 AWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVAN 787
+W V K + L + ES V + LS + ++L I L
Sbjct: 363 SWF--------------FEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKE 403
Query: 788 PSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTI 826
+ +D+P++ LD IV +A+K V + + I
Sbjct: 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 3e-11
Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 26/187 (13%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQT 711
T + + ++G +G GKTT+L +LAG K E R G
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRGKEIYN 76
Query: 712 DIHSPHITIEESLFFSAWLRLAPQI-----NSKTKADCVNHVLKTIELDGIKESLVGIPG 766
+S L++ +I SK VN +L I+ G K+ + +
Sbjct: 77 YFKEL---------YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLN 127
Query: 767 VSG--------LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
++ LS +RL + L+ + D+P++ LD R + +A++ +
Sbjct: 128 MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN 187
Query: 819 GRTIVCT 825
IV
Sbjct: 188 KYVIVVD 194
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 21/151 (13%)
Query: 89 RIIPDPDIDTYMKATSVHRLKKNLQTDYN---LKILGLDICADTLVGDAIRRGISGGQKR 145
RI P+ D + + + + + K L L ++ V D +SGG+ +
Sbjct: 338 RIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQ 392
Query: 146 RLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILI-----SLLQP 200
+L + +D+ ++ LD+ + + ++ + A I S+
Sbjct: 393 KLYIAATLAKEA-DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHD- 450
Query: 201 SPETFHLFDDIILMAEGKILYHGPRESVLEF 231
++ D II+ +G+ G S +
Sbjct: 451 -----YIADRIIVF-KGEPEKAGLATSPVTL 475
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 2e-13
Identities = 81/532 (15%), Positives = 155/532 (29%), Gaps = 154/532 (28%)
Query: 628 TPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTL-LDVLAGRKTSGCFK 686
+ R + L + LL+ LRP + GV G+GKT + LDV K
Sbjct: 127 AKYNVSRLQPYLKLRQALLE-----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 687 GEIKVNGYPKIQETF-VRVSGYCEQTDIHSPHITIE--ESLFFSAWLRLAPQINSKTKAD 743
+I F + + C +SP +E + L + QI+ +
Sbjct: 182 FKI-----------FWLNL-KNC-----NSPETVLEMLQKLLY--------QIDPNWTSR 216
Query: 744 CVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR-LTIGVEL--VANPSII--FMDEPTT 798
+ + + I+ L + L ++ + L + L V N F
Sbjct: 217 SDHSSNIKLRIHSIQAELRRL-----LKSKPYENCLLV---LLNVQNAKAWNAF------ 262
Query: 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESF--DEL--ILLKTGGRIIYSGP 854
+ ++ K V D T H + DE+ +LLK P
Sbjct: 263 --NLSCKILLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 855 LGNHSSRVIEYFEGIPGV-----PQIRNNYNPATW----------MLEVTSASTEAELGL 899
E P IR+ ATW + + +S
Sbjct: 320 R--------EVLTTNPRRLSIIAESIRD--GLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 900 DFSQIYED---------------SLLYENNKE-----LVRQLSTSGGAAR---------- 929
++ ++++ SL++ + + +V +L +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 930 DLHFTTRFSQNGWGQF-KSCLWKQHLSYWRTPSYNLMRIL--NTIAASFLFGLLFWNKG- 985
++ + +S + YN+ + + + +L + + G
Sbjct: 430 SIYLELKVKLENEYALHRSIV----------DHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 986 --KEINNQQDLFNILGSLYASFIFLGSMNCSSALPYAASERTV-------MYREQ---SA 1033
K I + + ++ F FL + + AS + Y+ +
Sbjct: 480 HLKNI-EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 1034 GMYSPLAYA---F----AQVTIEIPYL-LIQAALYVIITYPMIGFYASAYKI 1077
Y L A F + I Y L++ AL + A+K
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIAL----MAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 4e-12
Identities = 108/736 (14%), Positives = 222/736 (30%), Gaps = 218/736 (29%)
Query: 24 TGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI--LLEL 81
TGE Y YK + + A+V +D ++ D + + S+ +I ++
Sbjct: 11 TGEHQY-QYK--DILSVFEDAFVDNFD-------CKDVQDMP---KSILSKEEIDHIIMS 57
Query: 82 SGREEEARIIPDPDIDTYMK--ATSVHR-LKKNLQTDYNLKILGLDICADTLVGDAIRRG 138
+ T + V + +++ L+ +Y + I+
Sbjct: 58 KDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRINYK------------FLMSPIKT- 100
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 198
++R+ + M + D++ N + + V+ LQ + A LL
Sbjct: 101 ----EQRQPSMMTRMYIE-----QRDRLYNDNQVFAKYN-VSRLQPYLKLRQA-----LL 145
Query: 199 QPSPETFHLFDDIIL--MA-EGKILYHGPRESVLEFFESCGFRCPDRKAVISRKDQAQYW 255
+ P +++ + GK + + + C V + D +W
Sbjct: 146 ELRPAKN-----VLIDGVLGSGK--------TWVA-LDVC-----LSYKVQCKMDFKIFW 186
Query: 256 FHNELPHSFVSVDMFHEKFKESPFGKKLEEDLSQVYYKSESKKSSVSFAVFSLS-RWELF 314
+++ + E+ + E L ++ Y+ + +S S ++ R
Sbjct: 187 -----------LNLKNCNSPET-----VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 315 KACMSRELLLAKRNYFLYLFKTIQLIIIATMTMTLFLRTGMEVDVFHA---NYFMGS--- 368
+A + R LL + Y L++ L +V +A N F S
Sbjct: 231 QAELRR--LLKSKPY------ENCLLV---------LL-----NVQNAKAWNAFNLSCKI 268
Query: 369 LFYT---LVILIVDGISEIPMSLE-RLAVFYKQKEMCLYPAWAYV----IPATILKV-PL 419
L T V + + +SL+ + L + +P +L P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 420 SLVESLVWTSLTYYVIGFSPELWRWVSFEKAFVYFCIESSVDHCAETLKIDQFMCFQLEV 479
L S++ S+ + + + W+ V+ +K + IESS++ LE
Sbjct: 329 RL--SIIAESIRDGLATW--DNWKHVNCDK--LTTIIESSLN--------------VLEP 368
Query: 480 LQYGSSYYLVASLSHNVRLSSNNMIVYFKLIHWKKILFTNTTIGREILKSRGL---NFDE 536
+Y + ++ + + + + + W ++ ++ + L L E
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLI-----WFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 537 YFFWISLGALFGLALVFNFAFALALSFLKPPGSSPAMISHGKFSGIQR---SKGSC-DDE 592
I ++ L + A+ H + K DD
Sbjct: 424 STISI---------------PSIYLELKVKLENEYAL--HRSI--VDHYNIPKTFDSDDL 464
Query: 593 HVEDVDM------NAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLL 646
+D H + MVF D ++ LE + R A
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-----LEQKIRHDSTA------ 513
Query: 647 DDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGCFKGEIKVNGYPKIQETFVRV 704
SG+ TL + + K E VN F+
Sbjct: 514 ---------------WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI----LDFLP- 553
Query: 705 SGYCEQTDIHSPHITI 720
E+ I S + +
Sbjct: 554 --KIEENLICSKYTDL 567
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 2e-07
Identities = 99/676 (14%), Positives = 188/676 (27%), Gaps = 181/676 (26%)
Query: 593 HVEDVDMNAHPNTSQMILPFQPITMVFQ-------DLQYSIDTPLE-MRRRECGLAHKLQ 644
H D + + ++ I VF+ D + D P + + E H +
Sbjct: 5 HHMDFETG------EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIM 56
Query: 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGC--FKGEIKVNGYPKIQETFV 702
D V+GTLR L L ++ F E+ Y +
Sbjct: 57 SKDAVSGTLR-----------------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI- 98
Query: 703 RVSGYCEQTDIHSPHITIEESLFFSAWLRL--APQINSK---TKADCV----NHVLKTIE 753
+T+ P ++ ++ RL Q+ +K ++ +L+
Sbjct: 99 -------KTEQRQP--SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 754 LDGIKESLVGIPGVSGLSTEQRKRLTIGV-----ELVANPSIIF------MDEPTTGLDA 802
+ + G+ G SG + + + V IF + P T L+
Sbjct: 150 AKNV--LIDGVLG-SGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE- 200
Query: 803 RAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR--IIYSGPLGN-HS 859
++ + N I I L+ K ++ L N +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLV----LLNVQN 255
Query: 860 SRVIEYFEG---------IPGVPQIRNNYNPATWMLEVTSAS-TEAE-LGLDFSQIYEDS 908
++ F V + L+ S + T E L +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKY---- 310
Query: 909 LLYENNKELVRQ------LSTSGGAARDLHFTTRFSQNGWGQFKSCLWKQHLSYWRTPSY 962
L ++L R+ S A W W+
Sbjct: 311 -LDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-------------WD----NWKH--V 350
Query: 963 NLMRILNTIAASFLFGLLFWNKGKEINNQQDLFNILGSLYASFIFLGSMNCSSA----LP 1018
N ++ I +S E + +F+ L +F S + + +
Sbjct: 351 NCDKLTTIIESSL--------NVLEPAEYRKMFDRL------SVFPPSAHIPTILLSLIW 396
Query: 1019 YAASERTVMYREQSAGMYSPLAYAFAQVTIEIP--YLLI------QAALYVIITYPMIGF 1070
+ + VM YS + + TI IP YL + + AL+ I +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI----VDH 452
Query: 1071 YASAYKI-FWNFYGIFCSMMSFSYLGLLLVALSPNVTVASTLFSAFYTTYSLFAGFVIPQ 1129
Y + + +S++G L + TLF + + F+ +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH--PERMTLFRMVFLDFR----FL--E 504
Query: 1130 PQIPKWWIWLYYLSPTSWTLEGLLTSQYGDIDKEIMVFIEN--------KTIASFLE--E 1179
+I T+W G + + + +N I FL E
Sbjct: 505 QKIRH--------DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 1180 YFGFHHDHLAVVAVAL 1195
+ ++ +AL
Sbjct: 557 ENLICSKYTDLLRIAL 572
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 5e-13
Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 43/206 (20%)
Query: 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYP--K 696
+ LD V+ ++ G +T ++G +G+GK+TL++V+ G + G F+ + + +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK-DITNKEPAE 78
Query: 697 IQE-----TF--------------VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQIN 737
+ TF + + C ES S + +
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG-----------ESPLNSLFYKKWIPKE 127
Query: 738 SKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPT 797
+ +L+ ++L + + G LS Q K + IG L+ NP +I MDEP
Sbjct: 128 EEMVEKAF-KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPI 181
Query: 798 TGLDARAAAIVMRAVKNVADTGRTIV 823
G+ A + V + G T +
Sbjct: 182 AGVAPGLAHDIFNHVLELKAKGITFL 207
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-12
Identities = 41/179 (22%), Positives = 79/179 (44%), Gaps = 25/179 (13%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L+ G ++ G + ++G +G GKTT + +LAG + +G+I+ + V+
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEWDL---------TVA 350
Query: 706 GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIP 765
Y Q T+ E L A ++NS +LK + + + + V
Sbjct: 351 -YKPQYIKADYEGTVYE-LLSKI---DASKLNSNFY---KTELLKPLGIIDLYDREV--- 399
Query: 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIV 823
+ LS + +R+ I L+ + I +DEP+ LD V RA++++ + +T +
Sbjct: 400 --NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-12
Identities = 34/191 (17%), Positives = 74/191 (38%), Gaps = 40/191 (20%)
Query: 652 TLRPGVLTALMGVSGAGKTTLLDVLAGR----KTSGCFKGEIKVNGYP--KIQETFVRVS 705
++ G++ ++G +G GK+T + +LAG+ + + + ++Q F ++
Sbjct: 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 706 GYCEQTDIHSPHITIEESLFFSAWLRLAPQI-----NSKTKADCVNHVLKTIELDGIKES 760
+ + K V +LK + G E
Sbjct: 103 N---------------GEIRP------VVKPQYVDLIPKAVKGKVIELLKKADETGKLEE 141
Query: 761 LVGIPG--------VSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV 812
+V + LS + +R+ I L+ N + F DEP++ LD R RA+
Sbjct: 142 VVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAI 201
Query: 813 KNVADTGRTIV 823
+ +++ G++++
Sbjct: 202 RRLSEEGKSVL 212
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 745 VNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTI-GVELVANPSIIFMDEPTTGLDAR 803
V++ LK ++ +K+ LS Q+KR+ I GV LV P ++ +DEPT GLD
Sbjct: 124 VDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGV-LVMEPKVLILDEPTAGLDPM 177
Query: 804 AAAIVMRAVKNV-ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+ +M+ + + + G TI+ H + D + ++K GR+I G
Sbjct: 178 GVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMK-EGRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 21/112 (18%)
Query: 140 SGGQKRRLTTGREMLVGPIKAM-----FMDKITNGLDISTSFQIVTCLQHLAHITDATIL 194
S GQK+R+ + G + M +D+ T GLD +I+ L + TI+
Sbjct: 145 SFGQKKRVA-----IAG-VLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITII 198
Query: 195 ISLLQPS---PETFHLFDDIILMAEGKILYHGPRESVL---EFFESCGFRCP 240
I+ + D++ +M EG+++ G + V E R P
Sbjct: 199 IA----THDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLP 246
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 3e-09
Identities = 39/210 (18%), Positives = 73/210 (34%), Gaps = 27/210 (12%)
Query: 598 DMNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLA-HKLQLLDDVTGTLRPG 656
+ A + V + D ++ E LA LL+ L+
Sbjct: 402 EKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRA 461
Query: 657 VLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSP 716
+ G +G GK+TL+ +A + V+G+P +E R D
Sbjct: 462 RRYGICGPNGCGKSTLMRAIANGQ----------VDGFPTQEE--CRTVYVEHDIDGTHS 509
Query: 717 HITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRK 776
++ + +F S + + G + ++ +P +S LS +
Sbjct: 510 DTSVLDFVFESGVGTKE-------------AIKDKLIEFGFTDEMIAMP-ISALSGGWKM 555
Query: 777 RLTIGVELVANPSIIFMDEPTTGLDARAAA 806
+L + ++ N I+ +DEPT LD A
Sbjct: 556 KLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 756 GIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 814
G+ +V + GLS Q+ +L + P +I +DEPT LD + + +A+K
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 41/226 (18%), Positives = 83/226 (36%), Gaps = 71/226 (31%)
Query: 599 MNAHPNTSQMILPFQPITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVL 658
+ H + M + F + ++ + + V+ +R G +
Sbjct: 4 HHHHHHHGSMTIEFVGVEKIYPG--------------------GARSVRGVSFQIREGEM 43
Query: 659 TALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHS- 715
L+G SG+GKTT+L ++AG R T G++ + G TD+
Sbjct: 44 VGLLGPSGSGKTTILRLIAGLERPTK----GDVWIGGK--------------RVTDLPPQ 85
Query: 716 --------------PHITIEESLFFSAWLRL----APQINSKTKADCVNHVLKTIELDGI 757
H+T+ +++ F LR +++++ V +L+ + L+
Sbjct: 86 KRNVGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDAR-----VRELLRFMRLESY 138
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
LS Q++R+ + L P ++ DEP +D +
Sbjct: 139 ANRF-----PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 4e-07
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 829
LS +++R+ I L P ++F DEPT LD+ VM + + G +IV H+
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
Query: 830 SI 831
+
Sbjct: 201 EL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 8e-04
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCF----KGEIKVNG 693
++L ++ +++ G +++G SG+GK+TLL +L G +G++ + G
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL------GLLDAPTEGKVFLEG 65
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 50/209 (23%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCF-------KGEIKVNGY 694
L++L + +R G + ++G SG+GK+T L R C +GEI ++G
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFL-----R----CLNLLEDFDEGEIIIDGI 86
Query: 695 PKIQETFVRVSGYCEQTDIHS---------------PHITIEESLFFSAWLRLAP-QINS 738
+ T+++ PH+T+ ++ LAP ++
Sbjct: 87 NLKAK----------DTNLNKVREEVGMVFQRFNLFPHMTVLNNI------TLAPMKVRK 130
Query: 739 KTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798
+ ++ ++ G+K+ P LS Q +R+ I L P I+ DEPT+
Sbjct: 131 WPREKAEAKAMELLDKVGLKDKAHAYPD--SLSGGQAQRVAIARALAMEPKIMLFDEPTS 188
Query: 799 GLDARAAAIVMRAVKNVADTGRTIVCTIH 827
LD V+ +K +A+ G T+V H
Sbjct: 189 ALDPEMVGEVLSVMKQLANEGMTMVVVTH 217
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 46/216 (21%)
Query: 641 HK----LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCF-------KGEI 689
HK ++L V+ R G + +++G SG+GK+T L R C +G I
Sbjct: 13 HKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFL-----R----CINFLEKPSEGAI 63
Query: 690 KVNGYP-KIQETFVRVSGYCEQTDIHS---------------PHITIEESLFFSAWLRLA 733
VNG + ++ + H+T+ E++ A
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM------EA 117
Query: 734 P-QINSKTKADCVNHVLKTIELDGIKESLVGI-PGVSGLSTEQRKRLTIGVELVANPSII 791
P Q+ +K D LK + GI E G P LS Q++R++I L P ++
Sbjct: 118 PIQVLGLSKHDARERALKYLAKVGIDERAQGKYP--VHLSGGQQQRVSIARALAMEPDVL 175
Query: 792 FMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIH 827
DEPT+ LD V+R ++ +A+ G+T+V H
Sbjct: 176 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 24/195 (12%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCF----KGEIKVNGYPKIQE 699
+L ++ ++ G AL+G SG GK+T++ +L R F G + ++G I++
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-R-----FYDPMAGSVFLDGKE-IKQ 1099
Query: 700 TFVRVSGYCEQTDIHS--PHI---TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE- 753
+ V Q I S P + +I E++ + R+ A N + + I+
Sbjct: 1100 --LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEAN-IHQFIDS 1156
Query: 754 L-DGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV 812
L D + VG G LS Q++R+ I LV P I+ +DE T+ LD + +V A+
Sbjct: 1157 LPDKY-NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1214
Query: 813 KNVADTGRTIVCTIH 827
GRT + H
Sbjct: 1215 DKAR-EGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
++LVG G LS Q++R+ I LV NP I+ +DE T+ LD + A+V A+
Sbjct: 517 DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-E 574
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
GRT + H+ S + + D + GG I+ G
Sbjct: 575 GRTTIVIAHRLST-VRNA-DVIAGFD-GGVIVEQG 606
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 45/221 (20%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L D+ + G L A+ G +GAGKT+LL ++ G + G+IK +G R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE----GKIKHSG---------R 100
Query: 704 VSGYCEQTDIHSPHI---TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
+S +C Q I TI+E++ ++ V+K +L+
Sbjct: 101 IS-FCSQN----SWIMPGTIKENIIGVSY-----------DEYRYRSVIKACQLEEDISK 144
Query: 761 L-------VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
+G G++ LS QR R+++ + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 814 NVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+T + + ++ + D++++L G + G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYGT 241
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 777 RLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFES 836
RL + + L S++ +DEPT LD ++ ++ ++ H ++ ++
Sbjct: 262 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDA 319
Query: 837 FDELILL-KTGG 847
D +I + G
Sbjct: 320 ADHVIRISLENG 331
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 45/178 (25%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L+D++ +L PG + ++G SG GKTTLL LAG + S GEI ++G
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS----GEISLSG--------KT 67
Query: 704 VSGYC-----EQTDIHS--------PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLK 750
+ + + PH+T+ ++ + L + + + +L+
Sbjct: 68 IFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGK-GRTAQERQRIEAMLE 124
Query: 751 TIELDGIKESLVGIPGVSG-----LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
L GI ++G LS Q++R + L +P +I +DEP + LD +
Sbjct: 125 ----------LTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 45/186 (24%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
LD+V + G ++G SGAGKTT + ++AG ++G E+ +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG----ELYFDD--------RL 68
Query: 704 VSGYCEQT------DIHS--------PHITIEESLFFSAWLRLAP--QINSKTKADCVNH 747
V+ + I P++T E++ F +I + V
Sbjct: 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEE 123
Query: 748 VLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA--RAA 805
V K +++ + P LS Q++R+ + LV +PS++ +DEP + LDA R +
Sbjct: 124 VAKILDIHHVLNHF---P--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178
Query: 806 AIVMRA 811
RA
Sbjct: 179 ---ARA 181
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 30/154 (19%), Positives = 68/154 (44%), Gaps = 31/154 (20%)
Query: 660 ALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHS-- 715
L+G +GAGK+ L+++AG + G E+++NG + + I
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRG----EVRLNG-----ADITPLPPE--RRGIGFVP 76
Query: 716 ------PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769
PH+++ ++ + LR ++ + V + + + + + + +
Sbjct: 77 QDYALFPHLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----AR 126
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDAR 803
LS +R+R+ + LV P ++ +DEP + +D +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 4e-06
Identities = 48/200 (24%), Positives = 78/200 (39%), Gaps = 44/200 (22%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGC--FKGEIKVNGYPKI 697
+ + + + G + L+G +GAGKTT L +AG R G F G+ + P
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ-DITNKP-- 74
Query: 698 QETFVRVSGYCEQTDIHSP-------HITIEESLFFSAWLRLAPQINSKTKADCVNHVLK 750
R G P +T+ E+L A+ R K K + +
Sbjct: 75 AHVINR-MGIA-----LVPEGRRIFPELTVYENLMMGAYNR-------KDKEG----IKR 117
Query: 751 TIE--------LDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA 802
+E L + L G LS +++ L IG L++ P ++ MDEP+ GL
Sbjct: 118 DLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAP 172
Query: 803 RAAAIVMRAVKNVADTGRTI 822
+ V ++ + G TI
Sbjct: 173 ILVSEVFEVIQKINQEGTTI 192
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV-ADTGRTIVCTIHQ 828
LS Q++R+ I L NP II D+PT LD++ +M+ +K + + G+T+V H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 829 PSI 831
++
Sbjct: 206 INV 208
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 8e-06
Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 66/185 (35%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCF----KGEIKVNGYPKIQETF 701
LD+++ + G ++G +GAGKT L+++AG F G I ++G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG------FHVPDSGRILLDG-------- 61
Query: 702 VRVSGYCEQTDIHS------------------PHITIEESLFFSAWLRLAPQINSKTKAD 743
D+ PH+ ++++L F ++
Sbjct: 62 ---------KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK------DPK 106
Query: 744 CVNHVLKTIELDGIKESLVGIPGVSG-----LSTEQRKRLTIGVELVANPSIIFMDEPTT 798
V + + I + LS +++R+ + LV NP I+ +DEP +
Sbjct: 107 RVLDTAR----------DLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156
Query: 799 GLDAR 803
LD R
Sbjct: 157 ALDPR 161
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 44/220 (20%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L D+ + G L A+ G +GAGKT+LL ++ G + G+IK +G R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE----GKIKHSG---------R 70
Query: 704 VSGYCEQTDIHSPHI---TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
+S +C Q I TI+E++ F V+K +L+
Sbjct: 71 IS-FCSQF----SWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 761 L-------VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 813
+G G++ LS QR R+++ + + + +D P LD + +
Sbjct: 116 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
Query: 814 NVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+T + + ++ + D++++L G + G
Sbjct: 175 CKLMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYG 211
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 49/240 (20%), Positives = 93/240 (38%), Gaps = 65/240 (27%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L++V+ + G + ++G SGAGK+TL+ + R T G + V+G
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE----GSVLVDG---------- 89
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQ-----------INSKTKADCVNHVLKTI 752
++ + + L A + ++S+T V L
Sbjct: 90 -------QELTT---------LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL--- 130
Query: 753 ELDGIKES-----------LVGIPG-----VSGLSTEQRKRLTIGVELVANPSIIFMDEP 796
ELD + LVG+ S LS Q++R+ I L +NP ++ D+
Sbjct: 131 ELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQA 190
Query: 797 TTGLDARAAAIVMRAVKNV-ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855
T+ LD ++ +K++ G TI+ H+ + + D + ++ G +I +
Sbjct: 191 TSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVIS-NGELIEQDTV 248
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFE 835
RL + + L S++ +DEPT LD ++ ++ ++ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 836 SFDELILL-----KTGGRII 850
+ D +I + + ++
Sbjct: 128 AADHVIRISLENGSSKVEVV 147
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 6e-05
Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 46/222 (20%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L+ +T ++ G L A++G G GK++LL L K G + + G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE----GHVAIKG---------S 67
Query: 704 VSGYCEQTDIHSPHI---TIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
V+ Y Q I ++ E++ F + + V++ L E
Sbjct: 68 VA-YVPQQ----AWIQNDSLRENILF----------GCQLEEPYYRSVIQACALLPDLEI 112
Query: 761 L-------VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV- 812
L +G GV+ LS Q++R+++ + +N I D+P + +DA + V
Sbjct: 113 LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
Query: 813 -KNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
+T + H + D +I++ GG+I G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMS-GGKISEMG 210
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 38/180 (21%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFK-GEIKVNGY-PKIQETF 701
L+++ ++ G AL+G SG+GK+TLL +AG + TSG E V PK
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK----- 73
Query: 702 VRVSGYCEQTDI----HS----PHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE 753
++ + PH+T+ +++ F LR AP + + V + +
Sbjct: 74 --------DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAP------REEIDKKVREVAK 119
Query: 754 LDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA--RAAAIVMRA 811
+ I + L P LS Q++R+ I LV P ++ +DEP + LDA R +RA
Sbjct: 120 MLHIDKLLNRYP--WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
++VG G LS QR+R+ I LV NP I+ DE T+ LD + ++MR + +
Sbjct: 136 NTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K 193
Query: 819 GRTIVCTIH 827
GRT++ H
Sbjct: 194 GRTVIIIAH 202
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
+ VG G+ LS +++R+ I ++ P II +DE T+ LD + ++ V
Sbjct: 181 RTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-A 238
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
RT + H+ S + + D+++++K G I+ G
Sbjct: 239 NRTTIVVAHRLST-VVNA-DQILVIK-DGCIVERG 270
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
+++VG G+ LS +R+R+ I L+ +P I+ DE T+ LD++ + +AV+++
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K 203
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853
RT++ H+ S I + + +ILL G+I+ G
Sbjct: 204 NRTLIIIAHRLST-ISSA-ESIILLN-KGKIVEKG 235
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 36/118 (30%)
Query: 128 DTLVGDAIRRGI--SGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHL 185
DT+VG+ +G+ SGG+++R+ R +L P K + D+ T+ LD T + ++ L
Sbjct: 146 DTIVGN---KGMKLSGGERQRIAIARCLLKDP-KIVIFDEATSSLDSKTEYLFQKAVEDL 201
Query: 186 ---------AH----ITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
AH I+ A + IIL+ +GKI+ G + +L+
Sbjct: 202 RKNRTLIIIAHRLSTISSA-----------------ESIILLNKGKIVEKGTHKDLLK 242
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 54/189 (28%), Positives = 79/189 (41%), Gaps = 48/189 (25%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYPKIQET 700
K++ +D V+ ++ G AL+G SG GKTT L +LAG K + GEI +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS---GEIYFDD------- 64
Query: 701 FVRVSGYCEQTDIHS---------------PHITIEESLFFSAWLRLAPQINSKT-KADC 744
V V DI PH+T+ E++ F LR + K +
Sbjct: 65 -VLV------NDIPPKYREVGMVFQNYALYPHMTVFENIAFP--LRAR-----RISKDEV 110
Query: 745 VNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA-- 802
V++ I L P LS Q++R+ + LV P ++ DEP + LDA
Sbjct: 111 EKRVVEIARKLLIDNLLDRKPT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL 168
Query: 803 RAAAIVMRA 811
R MRA
Sbjct: 169 RMI---MRA 174
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD- 817
++ VG G LS QR+ + + L+ P ++ +D T+ LDA V R + +
Sbjct: 147 DTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW 205
Query: 818 TGRTIVCTIH 827
RT++
Sbjct: 206 ASRTVLLITQ 215
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 40/232 (17%), Positives = 79/232 (34%), Gaps = 63/232 (27%)
Query: 618 VFQDLQ--YSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDV 675
+DL Y+ +L++++ ++ PG L+G +G+GK+TLL
Sbjct: 21 TVKDLTAKYTEGGNA--------------ILENISFSISPGQRVGLLGRTGSGKSTLLSA 66
Query: 676 LAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHS-------PHITI--EESLFF 726
+GEI+++G S + ++ F
Sbjct: 67 FLRLLN---TEGEIQIDG-----------------VSWDSITLEQWRKAFGVIPQKVFIF 106
Query: 727 SAWLR--LAPQINSKTKADCVNHVLKTIELDGIKESLVGIP---------GVSGLSTEQR 775
S R L P + + + + V + L + + P G LS +
Sbjct: 107 SGTFRKNLDP-NAAHSDQE-IWKVADEVGL---RSVIEQFPGKLDFVLVDGGCVLSHGHK 161
Query: 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIH 827
+ + + +++ I+ +DEP+ LD I+ R +K V
Sbjct: 162 QLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ--AFADCTVILCE 211
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFK-GEIKVNGY-PK---IQ 698
++ + T++ G L+G SG GKTT L ++AG T G G+ V PK I
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 699 ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK 758
F + + PH+T+ E++ F ++ P K + V EL I+
Sbjct: 87 MVFQSYAVW--------PHMTVYENIAFPLKIKKFP------KDEIDKRVRWAAELLQIE 132
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA--RAAAIVMRA 811
E L P LS QR+R+ + +V P ++ MDEP + LDA R A MRA
Sbjct: 133 ELLNRYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 44/186 (23%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
+ +++ ++ G L+G SG GKTT L ++AG + G +I +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG----QIYIGD--------KL 66
Query: 704 VSGYCEQTDIHS---------------PHITIEESLFFSAWLRLAPQINSKT-KADCVNH 747
V+ + + PH+T+ +++ F L+L K + +
Sbjct: 67 VADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP--LKLR-----KVPRQEIDQR 119
Query: 748 VLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDA--RAA 805
V + EL G+ E L P LS QR+R+ +G +V P + MDEP + LDA R
Sbjct: 120 VREVAELLGLTELLNRKPR--ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR 177
Query: 806 AIVMRA 811
MRA
Sbjct: 178 ---MRA 180
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1218 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-11 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-09 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 8e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-09 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-12 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-26 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-09 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-08 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 9e-07 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-24 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-09 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-24 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-07 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-09 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-10 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-23 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 9e-07 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-11 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 9e-08 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-05 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-07 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-08 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-17 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-06 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 9e-04 | |
| d1cr2a_ | 277 | c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), | 0.002 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (278), Expect = 9e-28
Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 13/222 (5%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQE 699
+ + LD V+ ++ G +T ++G +G+GK+TL++V+ G + G E K + E
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 75
Query: 700 TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINS-------KTKADCVNHVLKTI 752
+ QT +T+ E+L +NS + + V K +
Sbjct: 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135
Query: 753 ELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAV 812
E + G LS Q K + IG L+ NP +I MDEP G+ A + V
Sbjct: 136 EFLKLSHLYDRKAG--ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 193
Query: 813 KNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+ G T + H+ + D L ++ G+II G
Sbjct: 194 LELKAKGITFLIIEHRLD-IVLNYIDHLYVMF-NGQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 62.7 bits (152), Expect = 4e-11
Identities = 40/218 (18%), Positives = 70/218 (32%), Gaps = 36/218 (16%)
Query: 20 TGLVT---GEVSYNG----YKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVG 72
TG + G V + K + Q + EMTV E L C G
Sbjct: 51 TGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES 110
Query: 73 SRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVG 132
+ + +EE + + L+ L L D G
Sbjct: 111 PLNSLFYKKWIPKEEEMVE---------------------KAFKILEFLKLSHLYDRKAG 149
Query: 133 DAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 192
+ +SGGQ + + GR ++ P + MD+ G+ + I + L
Sbjct: 150 E-----LSGGQMKLVEIGRALMTNPKM-IVMDEPIAGVAPGLAHDIFNHVLELKAKGITF 203
Query: 193 ILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
++I + D + +M G+I+ G E ++
Sbjct: 204 LIIE--HRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 109 bits (273), Expect = 3e-27
Identities = 47/232 (20%), Positives = 89/232 (38%), Gaps = 14/232 (6%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQE 699
+ + + + G + L+G +GAGKTT L +AG R G +
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 700 TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKE 759
+ P +T+ E+L A+ R + + + + +KE
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFS--LFPRLKE 131
Query: 760 SLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG 819
L + G LS +++ L IG L++ P ++ MDEP+ GL + V ++ + G
Sbjct: 132 RLKQLGG--TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 820 RTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN--HSSRVIEYFEGI 869
TI+ + +L+ G+I+ G + V + + G+
Sbjct: 190 TTILLVEQNAL-GALKVAHYGYVLE-TGQIVLEGKASELLDNEMVRKAYLGV 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 57.2 bits (138), Expect = 2e-09
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 118 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQ 177
L L G +SGG+++ L GR ++ P K + MD+ + GL +
Sbjct: 124 SLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRP-KLLMMDEPSLGLAPILVSE 177
Query: 178 IVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
+ +Q + +L+ Q + + ++ G+I+ G +L+
Sbjct: 178 VFEVIQKINQEGTTILLVE--QNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (270), Expect = 8e-27
Identities = 48/225 (21%), Positives = 100/225 (44%), Gaps = 21/225 (9%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP--- 695
+ L +V ++ G ++MG SG+GK+T+L+++ + T G E+ ++
Sbjct: 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG----EVYIDNIKTND 71
Query: 696 ----KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKT 751
++ + G+ Q P +T E++ + + + + L+
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM---SGEERRKRALEC 128
Query: 752 IELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRA 811
+++ ++E + LS Q++R+ I L NP II D+PT LD++ +M+
Sbjct: 129 LKMAELEERFANHK-PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 812 VKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855
+K + + G+T+V H I++ + +I LK G + L
Sbjct: 188 LKKLNEEDGKTVVVVTH--DINVARFGERIIYLK-DGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 56.4 bits (136), Expect = 4e-09
Identities = 43/227 (18%), Positives = 76/227 (33%), Gaps = 50/227 (22%)
Query: 9 GFGLSVISWFCTGLVT---GEVSYNGYKLEEFVPQKLS-------AYVSQYDLHIPEMTV 58
G G S + L GEV + K + +L+ +V Q IP +T
Sbjct: 41 GSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTA 100
Query: 59 RETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNL 118
E ++ + G +SG E R + L
Sbjct: 101 LENVELPLIFKYRG-------AMSGEERRKRAL------------------------ECL 129
Query: 119 KILGL-DICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQ 177
K+ L + A+ +SGGQ++R+ R + P + D+ T LD T +
Sbjct: 130 KMAELEERFANHKPNQ-----LSGGQQQRVAIARALANNP-PIILADQPTGALDSKTGEK 183
Query: 178 IVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGP 224
I+ L+ L T+++ + II + +G++
Sbjct: 184 IMQLLKKLNEEDGKTVVVVT--HDINVARFGERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 106 bits (266), Expect = 3e-26
Identities = 44/217 (20%), Positives = 86/217 (39%), Gaps = 18/217 (8%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQ- 698
++ + T++ G L+G SG GKTT L ++AG T G I
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTYL 73
Query: 699 ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK 758
R Q+ PH+T+ E++ F ++ + V + ++++ +
Sbjct: 74 PPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELL 130
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA-D 817
+ LS QR+R+ + +V P ++ MDEP + LDA+ + +K +
Sbjct: 131 NRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK 185
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
T + H + D + ++ G+++ G
Sbjct: 186 LKVTTIYVTHDQV-EAMTMGDRIAVMN-RGQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 66.3 bits (162), Expect = 1e-12
Identities = 35/207 (16%), Positives = 68/207 (32%), Gaps = 42/207 (20%)
Query: 25 GEVSYNGYKLEEFVPQKLS-AYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSG 83
G + + + P+ + + V Q P MTV E + F +
Sbjct: 61 GRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK----------FPK 110
Query: 84 REEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQ 143
E + R+ + ++L ++ + +SGGQ
Sbjct: 111 DEIDKRV------------------------RWAAELLQIEELLNRYPAQ-----LSGGQ 141
Query: 144 KRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPE 203
++R+ R ++V P + MD+ + LD + ++ L T + E
Sbjct: 142 RQRVAVARAIVVEP-DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-E 199
Query: 204 TFHLFDDIILMAEGKILYHGPRESVLE 230
+ D I +M G++L G V
Sbjct: 200 AMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 106 bits (267), Expect = 5e-26
Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 27/235 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVR 703
L ++ + G + A+ G +G+GKT+LL ++ G + G IK +G ++
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG----IIKHSG--RV------ 99
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763
+C Q P TI+E++ F K+ + +++G
Sbjct: 100 --SFCSQFSWIMPG-TIKENIIFGVSYDEYRY---KSVVKACQLQQDITKFAEQDNTVLG 153
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIV 823
G LS QR R+++ + + + +D P LD V + +T +
Sbjct: 154 -EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 824 CTIHQPSIDIFESFDELILLKTGGRIIYSGP---LGNHSSRVIEYFEGIPGVPQI 875
+ D++++L G + G L + G Q
Sbjct: 213 LVTSKME--HLRKADKILILH-QGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQF 264
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.6 bits (139), Expect = 2e-09
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 5/113 (4%)
Query: 118 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQ 177
I +T++G+ +SGGQ+ R++ R + +D LD+ T Q
Sbjct: 139 QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDAD-LYLLDSPFGYLDVFTEEQ 196
Query: 178 IVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
+ IL++ E D I+++ +G ++G +
Sbjct: 197 VFESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 102 bits (256), Expect = 3e-25
Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 16/189 (8%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVR 703
+L+ +T T+ G + G +G GKTTLL ++ KGEI NG P +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITKVK--G 70
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763
+ + I I++E+ L A L K + + L+++E+ +K+
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 122
Query: 764 IPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN-VADTGRTI 822
+ LS +R+ + L+ N I +D+P +D + V++++ + + G I
Sbjct: 123 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 823 VCTIHQPSI 831
+ + + S
Sbjct: 180 ISSREELSY 188
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 102 bits (256), Expect = 6e-25
Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 23/237 (9%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQE 699
K ++L ++ + G + L+G +GAGKTT L +++ + +SG + V G ++E
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEE 69
Query: 700 T--FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
++ Y + ++ E L F A +S + V + L
Sbjct: 70 PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEK 126
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817
+ V S S ++L I L+ NP + +DEPT+GLD A V + +K +
Sbjct: 127 IKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 181
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN-----HSSRVIEYFEGI 869
G TI+ + H ++ D + L+ G I+ +G + + + E FE +
Sbjct: 182 EGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGTVEELKERYKAQNIEEVFEEV 236
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 54.2 bits (130), Expect = 2e-08
Identities = 46/220 (20%), Positives = 76/220 (34%), Gaps = 47/220 (21%)
Query: 20 TGLVT---GEVSYNGYKLEEFVPQ--KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSR 74
+ L+ G V+ G + E + KL +Y+ + M E L F
Sbjct: 49 STLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---- 104
Query: 75 ADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDA 134
S E E + + +I GL V
Sbjct: 105 ------SSSSEIEEMV------------------------ERATEIAGLGEKIKDRVS-- 132
Query: 135 IRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL 194
S G R+L R ++V P +D+ T+GLD+ + ++ L+ + TIL
Sbjct: 133 ---TYSKGMVRKLLIARALMVNPRL-AILDEPTSGLDVLNAREVRKILKQASQ-EGLTIL 187
Query: 195 ISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFFES 234
+S E L D I L+ G I+ G E + E +++
Sbjct: 188 VSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKERYKA 226
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (252), Expect = 3e-24
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 22/227 (9%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGC-----------FKGE 688
++L V+ R G + +++G SG+GK+T L + + + G +
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 73
Query: 689 IKVNGYPKIQETFVRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNH 747
++ K Q +R Q H+T+ E++ + Q+ +K D
Sbjct: 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI-----QVLGLSKHDARER 128
Query: 748 VLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAI 807
LK + GI E G LS Q++R++I L P ++ DEPT+ LD
Sbjct: 129 ALKYLAKVGIDERAQGKY-PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 187
Query: 808 VMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
V+R ++ +A+ G+T+V H+ +I L G+I G
Sbjct: 188 VLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLH-QGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 49.5 bits (118), Expect = 9e-07
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 118 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQ 177
L +G+D A +SGGQ++R++ R + + P + D+ T+ LD +
Sbjct: 133 LAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEP-DVLLFDEPTSALDPELVGE 187
Query: 178 IVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
++ +Q LA ++++ H+ +I + +GKI G E V
Sbjct: 188 VLRIMQQLAEEGKTMVVVTHEMG--FARHVSSHVIFLHQGKIEEEGDPEQVFG 238
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 100 bits (250), Expect = 6e-24
Identities = 43/217 (19%), Positives = 87/217 (40%), Gaps = 12/217 (5%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP---KI 697
++ L ++ + G AL+G SG+GK+T+ ++ +G I ++G+
Sbjct: 26 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYT 83
Query: 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
+ Q + QI + + ++D
Sbjct: 84 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN--KMDNG 141
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD 817
++++G G LS QR+R+ I L+ + I+ +DE T+ LD + + A+ +
Sbjct: 142 LDTIIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 200
Query: 818 TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
RT + H+ S E DE+++++ G I+ G
Sbjct: 201 -NRTSLVIAHRLS--TIEQADEIVVVE-DGIIVERGT 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 57.2 bits (138), Expect = 3e-09
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 120 ILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIV 179
I +D DT++G+ +SGGQ++R+ R +L + +D+ T+ LD + I
Sbjct: 135 INKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDS-PILILDEATSALDTESERAIQ 192
Query: 180 TCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
L L + T L+ + T D+I+++ +G I+ G +L
Sbjct: 193 AALDELQK--NRTSLV--IAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 99.2 bits (247), Expect = 7e-24
Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 26/218 (11%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVS 705
L ++G +R G + L+G +GAGK+TLL +AG + KG I+ G P + +++
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 706 GYCEQTDIHSPHITIEESLFF--SAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVG 763
+H +++ +++ F W L + KT+ + +N V + LD
Sbjct: 72 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 124
Query: 764 IPGVSGLSTEQRKRLTIGVELVA-------NPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
LS + +R+ + ++ ++ +DEP LD + + + + +
Sbjct: 125 -----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC 179
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
G IV + H + LLK GG+++ SG
Sbjct: 180 QQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 49.5 bits (118), Expect = 6e-07
Identities = 42/216 (19%), Positives = 68/216 (31%), Gaps = 55/216 (25%)
Query: 24 TGEVSYNGYKLEEFVPQKLS---AYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLE 80
G + + G LE + KL+ AY+SQ V L T Q +R ++L +
Sbjct: 52 KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL---TLHQHDKTRTELLND 108
Query: 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGIS 140
+ L LD +S
Sbjct: 109 V------------------------------------AGALALDDKLGRSTNQ-----LS 127
Query: 141 GGQKRRLTTGREMLVGPI------KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATIL 194
GG+ +R+ +L + + +D+ N LD++ + L L A ++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187
Query: 195 ISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
S T L+ GK+L G RE VL
Sbjct: 188 SS--HDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 98.8 bits (246), Expect = 1e-23
Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 15/219 (6%)
Query: 641 HKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--CFKGEIKVNGYPK 696
+Q L++V+ + G + ++G SGAGK+TL+ + R T G G+
Sbjct: 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 75
Query: 697 IQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG 756
R G Q T+ ++ L P+ K + +L + L
Sbjct: 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT---ELLSLVGLGD 132
Query: 757 IKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 816
+S S LS Q++R+ I L +NP ++ DE T+ LD ++ +K++
Sbjct: 133 KHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 817 D-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
G TI+ H+ + + D + ++ G +I
Sbjct: 188 RRLGLTILLITHEMDV-VKRICDCVAVIS-NGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 57.2 bits (138), Expect = 2e-09
Identities = 40/231 (17%), Positives = 76/231 (32%), Gaps = 50/231 (21%)
Query: 9 GFGLSVISWFCTGLVT---GEVSYNGYKLEEFVPQKLS------AYVSQYDLHIPEMTVR 59
G G S + L G V +G +L +L+ + Q+ + TV
Sbjct: 41 GAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVF 100
Query: 60 ETLDFSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLK 119
+ E + R+ L
Sbjct: 101 GNVALPLELDNT----------PKDEVKRRV------------------------TELLS 126
Query: 120 ILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIV 179
++GL D+ + +SGGQK+R+ R L K + D+ T+ LD +T+ I+
Sbjct: 127 LVGLGDKHDSYPSN-----LSGGQKQRVAIAR-ALASNPKVLLCDEATSALDPATTRSIL 180
Query: 180 TCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
L+ + TIL+ + + D + +++ G+++ V
Sbjct: 181 ELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 99.1 bits (247), Expect = 1e-23
Identities = 49/213 (23%), Positives = 98/213 (46%), Gaps = 11/213 (5%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP--KIQETF 701
+L D+ ++ G A +G+SG GK+TL++++ G+I ++G+
Sbjct: 32 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTGS 89
Query: 702 VRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESL 761
+R Q D T++E++ ++ K + + L ++
Sbjct: 90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIM--NLPQGYDTE 147
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRT 821
VG GV LS Q++RL+I + NP I+ +DE T+ LD + +I+ A+ ++ RT
Sbjct: 148 VGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRT 205
Query: 822 IVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+ H+ S D++++++ G I+ +G
Sbjct: 206 TLIVAHRLS--TITHADKIVVIE-NGHIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 60.6 bits (147), Expect = 2e-10
Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 41/208 (19%)
Query: 25 GEVSYNGYKLEEFVPQKLSAYVS--QYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
G++ +G+ +++F+ L + Q D + TV+E +
Sbjct: 73 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL------------------ 114
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
GR D ++ K + H NL Y DT VG+ + +SGG
Sbjct: 115 GRPTA----TDEEVVEAAKMANAHDFIMNLPQGY-----------DTEVGERGVK-LSGG 158
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
QK+RL+ R L P + +D+ T+ LD+ + I L L+ D T LI + S
Sbjct: 159 QKQRLSIARIFLNNP-PILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS- 214
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLE 230
T D I+++ G I+ G ++
Sbjct: 215 -TITHADKIVVIENGHIVETGTHRELIA 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 96.9 bits (241), Expect = 7e-23
Identities = 48/212 (22%), Positives = 96/212 (45%), Gaps = 13/212 (6%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP---KIQETFV 702
LD++ +++ G + ++G SG+GK+TL ++ G++ ++G+
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLR 76
Query: 703 RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLV 762
R G Q D + +I +++ + ++ K I + +
Sbjct: 77 RQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLA---GAHDFISELREGYNTI 132
Query: 763 GIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTI 822
+GLS QR+R+ I LV NP I+ DE T+ LD + ++MR + + GRT+
Sbjct: 133 VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 191
Query: 823 VCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+ H+ S ++ D +I+++ G+I+ G
Sbjct: 192 IIIAHRLS--TVKNADRIIVME-KGKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 49.1 bits (117), Expect = 9e-07
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 139 ISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLL 198
+SGGQ++R+ R LV K + D+ T+ LD + I+ + + T++I
Sbjct: 140 LSGGQRQRIAIAR-ALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAH 196
Query: 199 QPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
+ S T D II+M +GKI+ G + +L
Sbjct: 197 RLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.7 bits (238), Expect = 2e-22
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 14/214 (6%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP---KIQETFV 702
L +T TLRPG +TAL+G +G+GK+T+ +L G++ ++G P
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLH 87
Query: 703 RVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE-LDGIKESL 761
R Q + +++E++ + L P + T A + I L ++
Sbjct: 88 RQVAAVGQ-EPQVFGRSLQENIAY--GLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 144
Query: 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGR 820
V G LS QR+ + + L+ P ++ +D+ T+ LDA + V + + + R
Sbjct: 145 VDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSR 203
Query: 821 TIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
+++ S + E D ++ L+ GG I G
Sbjct: 204 SVLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (150), Expect = 6e-11
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Query: 100 MKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159
K T +++ + I GL DT V +A + +SGGQ++ + R ++ P
Sbjct: 114 QKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKP-C 171
Query: 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKI 219
+ +D T+ LD ++ Q+ L ++L+ S D I+ + G I
Sbjct: 172 VLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAI 229
Query: 220 LYHGPRESVLE 230
G + ++E
Sbjct: 230 REGGTHQQLME 240
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 92.3 bits (229), Expect = 2e-21
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 14/215 (6%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETF 701
++ + D+ + G +G SG GK+TLL ++AG +T G++ +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPP 69
Query: 702 VRVS-GYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
G Q+ PH+++ E++ F L + VN V + ++L + +
Sbjct: 70 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR 126
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA-DTG 819
LS QR+R+ IG LVA PS+ +DEP + LDA + + + G
Sbjct: 127 K-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 181
Query: 820 RTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
RT++ H D++++L GR+ G
Sbjct: 182 RTMIYVTHDQVE-AMTLADKIVVLD-AGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 52.3 bits (125), Expect = 9e-08
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 118 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQ 177
++L L D +SGGQ++R+ GR ++ P +D+ + LD + Q
Sbjct: 115 AEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP-SVFLLDEPLSNLDAALRVQ 168
Query: 178 IVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
+ + L T++ E L D I+++ G++ G +
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 87.4 bits (216), Expect = 1e-19
Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 15/218 (6%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGC--FKGEIKVNGYPKI 697
K+ LD+V + G ++G SGAGKTT + ++AG ++G F + + I
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI 757
R G QT P++T E++ F + + + + V K +++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE---EVAKILDIHHV 133
Query: 758 KESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA- 816
LS Q++R+ + LV +PS++ +DEP + LDAR VK V
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 817 DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
G T++ H P+ DIF D + +L G+++ G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVLV-KGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 45.8 bits (108), Expect = 1e-05
Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 133 DAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDAT 192
+ R +SG Q++R+ R + V + +D+ + LD ++ + T
Sbjct: 135 NHFPRELSGAQQQRVALARAL-VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 193 ILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
+L+ P+ + F + D + ++ +GK++ G E + +
Sbjct: 194 LLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 86.1 bits (213), Expect = 3e-19
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 16/216 (7%)
Query: 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYP---KIQ 698
Q+L D++ +P + A G SG GK+T+ +L + T+ GEI ++G P
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA----GEITIDGQPIDNISL 71
Query: 699 ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIK 758
E + G+ Q E + + D +
Sbjct: 72 ENWRSQIGFVSQDSAIMAGTIRENLTYG--LEGDYTDEDLWQVLDLAFARSFVENMPDQL 129
Query: 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT 818
+ VG GV +S QR+RL I + NP I+ +DE T LD+ + ++V +A+ ++
Sbjct: 130 NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK- 187
Query: 819 GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
GRT + H+ S D++ ++ G+I SG
Sbjct: 188 GRTTLVIAHRLS--TIVDADKIYFIE-KGQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 51.4 bits (123), Expect = 2e-07
Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 40/208 (19%)
Query: 25 GEVSYNGYKLEEFVPQKLSAYVS--QYDLHIPEMTVRETLDFSTYCQGVGSRADILLELS 82
GE++ +G ++ + + + D I T+RE L + +L+L+
Sbjct: 57 GEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLA 116
Query: 83 GREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGG 142
+PD T V + SGG
Sbjct: 117 FARSFVENMPD------QLNTEVGERGVKI---------------------------SGG 143
Query: 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSP 202
Q++RL R L P K + +D+ T LD + + L L T L+ + S
Sbjct: 144 QRQRLAIARAFLRNP-KILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLS- 199
Query: 203 ETFHLFDDIILMAEGKILYHGPRESVLE 230
T D I + +G+I G ++
Sbjct: 200 -TIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 85.4 bits (211), Expect = 5e-19
Identities = 45/215 (20%), Positives = 87/215 (40%), Gaps = 8/215 (3%)
Query: 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP-KIQET 700
++ + +++ ++ G L+G SG GKTT L ++AG + +G+I + E
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEK 72
Query: 701 FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKES 760
+ V + + + + ++ + + V + EL G+ E
Sbjct: 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL 132
Query: 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA-DTG 819
L P LS QR+R+ +G +V P + MDEP + LDA+ + +K + G
Sbjct: 133 LNRKP--RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 820 RTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
T + H + D + ++ G + G
Sbjct: 191 VTTIYVTHDQV-EAMTMGDRIAVMN-RGVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 54.2 bits (130), Expect = 2e-08
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 7/113 (6%)
Query: 118 LKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQ 177
++LGL + + +SGGQ++R+ GR ++ P + MD+ + LD +
Sbjct: 124 AELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKP-QVFLMDEPLSNLDAKLRVR 177
Query: 178 IVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230
+ L+ L T + E + D I +M G + G + V +
Sbjct: 178 MRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 79.3 bits (195), Expect = 6e-17
Identities = 41/211 (19%), Positives = 88/211 (41%), Gaps = 17/211 (8%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVR-V 704
LD+++ + G ++G +GAGKT L+++AG G I ++G + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHD 73
Query: 705 SGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGI 764
+ Q PH+ ++++L F + V + ++++ + +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRM------KKIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA-DTGRTIV 823
LS +++R+ + LV NP I+ +DEP + LD R + + T++
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 824 CTIHQPSIDIFESFDELILLKTGGRIIYSGP 854
H + + D + ++ G++I G
Sbjct: 183 HITHDQT-EARIMADRIAVVM-DGKLIQVGK 211
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 47.0 bits (111), Expect = 5e-06
Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 7/134 (5%)
Query: 97 DTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVG 156
+ ++K + + L ++ D +SGG+++R+ R ++
Sbjct: 91 KNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVT- 144
Query: 157 PIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAE 216
K + +D+ + LD T L L T+L + E + D I ++ +
Sbjct: 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD 203
Query: 217 GKILYHGPRESVLE 230
GK++ G E + E
Sbjct: 204 GKLIQVGKPEEIFE 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.1 bits (166), Expect = 5e-13
Identities = 44/234 (18%), Positives = 97/234 (41%), Gaps = 27/234 (11%)
Query: 655 PGVLTALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVRVS-GYCEQT 711
L+G +GAGK+ L+++AG + GE+++NG R G+ Q
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDR----GEVRLNGADITPLPPERRGIGFVPQD 78
Query: 712 DIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLS 771
PH+++ ++ + + + + V + + + + + + + LS
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRK-----PARLS 128
Query: 772 TEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA-DTGRTIVCTIHQPS 830
+R+R+ + LV P ++ +DEP + +D + ++M ++ V + I+ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 831 IDIFESFDELILLKTGGRIIYSGP----LGNHSSRVIEYFEG---IPGVPQIRN 877
+ DE+ ++ GRI+ G + V E+ + V +I +
Sbjct: 189 -EAAMLADEVAVML-NGRIVEKGKLKELFSAKNGEVAEFLSARNLLLKVSKILD 240
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 43.8 bits (103), Expect = 5e-05
Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 44/207 (21%)
Query: 25 GEVSYNGYKLEEFVPQKLS-AYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLELSG 83
GEV NG + P++ +V Q P ++V + + R + E+
Sbjct: 53 GEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM-- 110
Query: 84 REEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQ 143
+ LG+ D +SGG+
Sbjct: 111 ----------------------------------AEKLGIAHLLDRKPAR-----LSGGE 131
Query: 144 KRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPE 203
++R+ R +++ + + +D+ + +D+ T ++ L+ + D IL E
Sbjct: 132 RQRVALARALVI-QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-E 189
Query: 204 TFHLFDDIILMAEGKILYHGPRESVLE 230
L D++ +M G+I+ G + +
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELFS 216
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 47.7 bits (112), Expect = 2e-06
Identities = 26/197 (13%), Positives = 45/197 (22%), Gaps = 40/197 (20%)
Query: 660 ALMGVSGAGKTTLLDVLAG--RKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPH 717
+ G G GKTTL+ + K + VR ++T
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRA----IGFWTEE--------VRDPETKKRTGFRIIT 51
Query: 718 ITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKR 777
++ +F S + + S
Sbjct: 52 TEGKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILE 89
Query: 778 LTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESF 837
+I +DE + + D +V TI +
Sbjct: 90 RAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL--V 146
Query: 838 DELILLKTGGRIIYSGP 854
E+ L G +I P
Sbjct: 147 KEIRRLP-GAVLIELTP 162
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 40.4 bits (93), Expect = 9e-04
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 2/105 (1%)
Query: 646 LDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSG--CFKGEIKVNGYPKIQETFVR 703
LD V + G + AL+ GAGK+ L LA + G + G
Sbjct: 19 LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 78
Query: 704 VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHV 748
+ + H++ EE + L + P I S
Sbjct: 79 PTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWF 123
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Score = 39.2 bits (90), Expect = 0.002
Identities = 16/92 (17%), Positives = 31/92 (33%)
Query: 638 GLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKI 697
L ++D T R G + + SG GK+T + A + + K +
Sbjct: 17 LLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESV 76
Query: 698 QETFVRVSGYCEQTDIHSPHITIEESLFFSAW 729
+ET + G + + E + +
Sbjct: 77 EETAEDLIGLHNRVRLRQSDSLKREIIENGKF 108
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1218 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.96 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.87 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.71 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.48 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.43 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.26 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.21 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.07 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.95 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.81 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.74 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.09 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.06 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.86 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.64 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.5 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.43 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.26 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.13 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.07 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.05 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.03 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.92 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.88 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.74 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.65 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.63 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.63 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.61 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.58 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.51 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.5 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.45 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.41 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.4 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.37 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.36 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.35 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.34 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.32 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.3 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.28 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.25 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.25 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.25 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.21 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.2 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.19 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.12 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.1 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.1 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.08 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.07 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.06 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.98 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.98 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.96 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.94 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.94 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.93 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.85 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.85 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.85 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.81 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.77 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.74 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.74 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.73 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.71 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.7 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.61 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.58 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.58 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.57 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.56 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.49 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.47 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.46 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.43 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.43 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.4 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.38 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.38 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.37 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.35 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.35 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.31 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.29 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.29 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.26 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.26 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.23 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.22 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.22 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.19 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.17 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.15 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.14 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.13 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.12 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.06 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.0 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.95 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.94 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.94 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.93 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.88 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.83 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.8 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.77 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.77 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.76 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.74 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.67 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.66 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.66 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.49 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.48 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.44 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.43 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.42 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.39 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.38 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.35 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.33 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.26 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.23 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.22 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.22 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.19 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.11 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.1 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.08 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.05 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.03 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.98 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.98 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.94 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.93 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.9 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.86 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.8 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.77 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.63 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.62 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.61 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.57 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.55 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.55 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.5 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.5 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.46 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.46 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.44 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.42 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.35 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.32 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.27 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.22 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.2 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.14 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.1 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.1 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.09 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.08 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.06 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.05 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.02 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.97 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.88 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.76 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.62 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.57 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 92.52 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.46 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.45 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.41 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.4 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.25 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.23 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.17 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.11 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.1 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.04 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.88 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.83 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.8 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.76 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.74 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.73 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.61 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.57 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.56 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 91.49 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.48 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.47 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.39 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.37 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.32 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.27 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.27 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.1 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.57 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 90.51 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.39 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.24 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.15 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 90.12 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.87 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.57 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.56 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 88.84 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.37 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.08 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.87 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.41 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 87.37 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 87.0 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.96 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.78 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 86.58 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 86.55 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 86.4 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 86.06 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 86.03 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 85.75 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.7 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 85.16 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.76 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.27 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.87 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 83.81 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 82.28 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 82.18 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 82.14 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 82.03 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 81.8 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 81.79 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 81.71 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 80.44 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 80.4 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=347.53 Aligned_cols=215 Identities=22% Similarity=0.339 Sum_probs=191.8
Q ss_pred EEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEE
Q ss_conf 89999699999067001110027665410321038999687499999599981999999896999898334599997970
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|++.++. ...+|+|+|+.+++||+++|+||||||||||+++|+|...+. +|+|.+||.+
T Consensus 3 ~i~v~nl~k~yg--------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~--sG~I~~~g~~ 66 (240)
T d1g2912 3 GVRLVDVWKVFG--------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS--RGQIYIGDKL 66 (240)
T ss_dssp EEEEEEEEEEET--------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS--EEEEEETTEE
T ss_pred CEEEEEEEEEEC--------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC--CCEEEECCEE
T ss_conf 189986999989--------------999985606688699899999999980999999996487889--8989999998
Q ss_pred CCCC-------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 8500-------122238895069988999989999999986103999994559999999999829876433333588877
Q 000937 696 KIQE-------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVS 768 (1218)
Q Consensus 696 ~~~~-------~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~ 768 (1218)
.... ..++.++||+|++.+++++||+||+.+...++. .+..+.+++++++++.++|.+..+..+ +
T Consensus 67 i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~ 138 (240)
T d1g2912 67 VADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----R 138 (240)
T ss_dssp EEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----G
T ss_pred ECCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHCCCH-----H
T ss_conf 03566444245322551200221222310116676330687729---998999999999998759966762993-----3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 88989999999999995099677983999999999999999999999865-98899995489988998515488991397
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++...+|++++|. +|
T Consensus 139 ~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~-~G 216 (240)
T d1g2912 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RG 216 (240)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TT
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CC
T ss_conf 499999999999999826998898258876569899989999999998636988999959999-9999699999998-99
Q ss_pred EEEEECCCC
Q ss_conf 999984799
Q 000937 848 RIIYSGPLG 856 (1218)
Q Consensus 848 ~~v~~G~~~ 856 (1218)
++++.|+++
T Consensus 217 ~iv~~G~~~ 225 (240)
T d1g2912 217 VLQQVGSPD 225 (240)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
T ss_conf 999985999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=351.61 Aligned_cols=215 Identities=20% Similarity=0.343 Sum_probs=192.4
Q ss_pred EEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEE
Q ss_conf 89999699999067001110027665410321038999687499999599981999999896999898334599997970
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|++.+|. .+.+|+|||+.+++||+++|+||||||||||+++|+|..++. +|+|.+||++
T Consensus 6 ~I~v~nlsk~yg--------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~--sG~I~i~g~~ 69 (239)
T d1v43a3 6 EVKLENLTKRFG--------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT--EGRIYFGDRD 69 (239)
T ss_dssp CEEEEEEEEEET--------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEE
T ss_pred EEEEEEEEEEEC--------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC--CCEEEECCEE
T ss_conf 499987999999--------------999981306788799899999999982999999997589998--7879991641
Q ss_pred CCC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 850-0122238895069988999989999999986103999994559999999999829876433333588877889899
Q 000937 696 KIQ-ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 696 ~~~-~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 774 (1218)
... ...++.++||+|++.+++++||+||+.|.+.++ ..++.+.+++++++++.++|.+..+..+ ..|||||
T Consensus 70 i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq 141 (239)
T d1v43a3 70 VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQ 141 (239)
T ss_dssp CTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSC
T ss_pred CCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHH
T ss_conf 3547700015899800335342220999999999873---9999999999999998759855660995-----4699999
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEEC
Q ss_conf 99999999995099677983999999999999999999999865-98899995489988998515488991397999984
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSG 853 (1218)
Q Consensus 775 rkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G 853 (1218)
|||++||++|+.+|++|+|||||+|||+.++..+.+.+++++++ |.|+|+++|++. ++.+.+|++++|. +|+++..|
T Consensus 142 ~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G 219 (239)
T d1v43a3 142 RQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMN-RGQLLQIG 219 (239)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEC
T ss_conf 889999766404998243068866689899989999999998731980799948999-9998699999998-99999985
Q ss_pred CCC
Q ss_conf 799
Q 000937 854 PLG 856 (1218)
Q Consensus 854 ~~~ 856 (1218)
+++
T Consensus 220 ~~~ 222 (239)
T d1v43a3 220 SPT 222 (239)
T ss_dssp CHH
T ss_pred CHH
T ss_conf 999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=352.31 Aligned_cols=214 Identities=25% Similarity=0.391 Sum_probs=190.2
Q ss_pred EEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEEC
Q ss_conf 99996999990670011100276654103210389996874999995999819999998969998983345999979708
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|++++|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|..++. +|+|.+||++.
T Consensus 1 Iev~nv~k~yg--------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~--sG~I~i~g~~i 64 (232)
T d2awna2 1 VQLQNVTKAWG--------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT--SGDLFIGEKRM 64 (232)
T ss_dssp EEEEEEEEEET--------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEESSSCC
T ss_pred CEEEEEEEEEC--------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC--CCEEEECCEEC
T ss_conf 99999999989--------------999981117788699899999899982999999996587888--88899999977
Q ss_pred CCC-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 500-1222388950699889999899999999861039999945599999999998298764333335888778898999
Q 000937 697 IQE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 697 ~~~-~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 775 (1218)
... ..++.++||+|++.+++++||+||+.|...++. .+.++.+++++++++.++|.+..+..+. .||||||
T Consensus 65 ~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqk 136 (232)
T d2awna2 65 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQR 136 (232)
T ss_dssp TTSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC-----------------------
T ss_pred CCCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHH
T ss_conf 8886444322234334202643337889789998759---9889999999999975788656648965-----6999999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 999999999509967798399999999999999999999986-5988999954899889985154889913979999847
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAD-TGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 776 krv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 854 (1218)
||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ .|.|+|+++|++. ++...+|++++|. +|+++..|+
T Consensus 137 QRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~ 214 (232)
T d2awna2 137 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGK 214 (232)
T ss_dssp ---CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEEC
T ss_conf 99999999703998899758887889889989999999998742987999948999-9999699999997-999999808
Q ss_pred CC
Q ss_conf 99
Q 000937 855 LG 856 (1218)
Q Consensus 855 ~~ 856 (1218)
++
T Consensus 215 ~~ 216 (232)
T d2awna2 215 PL 216 (232)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=348.91 Aligned_cols=217 Identities=26% Similarity=0.387 Sum_probs=191.7
Q ss_pred EEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEE
Q ss_conf 89999699999067001110027665410321038999687499999599981999999896999898334599997970
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|++++|+. +...+|+|+|+.+++||+++|+||||||||||+++|+|..++. +|+|.+||++
T Consensus 3 ~i~v~nlsk~y~~------------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~--~G~I~~~g~~ 68 (242)
T d1oxxk2 3 RIIVKNVSKVFKK------------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS--TGELYFDDRL 68 (242)
T ss_dssp CEEEEEEEEEEGG------------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS--EEEEEETTEE
T ss_pred EEEEEEEEEEECC------------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEE
T ss_conf 8999757999889------------9989980407898799899999899980999999997586888--7459999999
Q ss_pred CCC------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 850------01222388950699889999899999999861039999945599999999998298764333335888778
Q 000937 696 KIQ------ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSG 769 (1218)
Q Consensus 696 ~~~------~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~ 769 (1218)
... ...++.+|||+|+..++|++||+||+.|....+ ..+..+.+++++++++.++|.+..+..++ .
T Consensus 69 i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~ 140 (242)
T d1oxxk2 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----E 140 (242)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----G
T ss_pred EECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----H
T ss_conf 513731115312045147730433466665777766556761---37999999999999866591766648954-----5
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCE
Q ss_conf 8989999999999995099677983999999999999999999999865-988999954899889985154889913979
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 770 lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
||||||||++|||||+.+|++|++||||+|||+.++..+++.++++.++ |.|+|+++|+++ ++.+.+|++++|. +|+
T Consensus 141 LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~-~G~ 218 (242)
T d1oxxk2 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV-KGK 218 (242)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEE-CCE
T ss_conf 99999858998757760466145447866799899889989999998635987999979999-9999699999998-999
Q ss_pred EEEECCCC
Q ss_conf 99984799
Q 000937 849 IIYSGPLG 856 (1218)
Q Consensus 849 ~v~~G~~~ 856 (1218)
++..|+++
T Consensus 219 iv~~g~~~ 226 (242)
T d1oxxk2 219 LVQVGKPE 226 (242)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
T ss_conf 99986999
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=344.15 Aligned_cols=219 Identities=21% Similarity=0.296 Sum_probs=191.6
Q ss_pred EEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEEC
Q ss_conf 99996999990670011100276654103210389996874999995999819999998969998983345999979708
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++++|++.+|... ....++|+|||+.+++||+++|+||||||||||+++|+|...+. +|+|.++|++.
T Consensus 2 i~v~nlsk~y~~~----------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~--sG~I~~~g~~i 69 (240)
T d3dhwc1 2 IKLSNITKVFHQG----------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--EGSVLVDGQEL 69 (240)
T ss_dssp EEEEEEEEEEECS----------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS--EEEEEETTEEE
T ss_pred EEEEEEEEEECCC----------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC--CCCEEECCEEE
T ss_conf 7998279996999----------81489861505788699799998999898889999875886366--77328867685
Q ss_pred CC---C---CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 50---0---12223889506998899998999999998610399999455999999999982987643333358887788
Q 000937 697 IQ---E---TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~---~---~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~l 770 (1218)
.. . .+++.++||+|+..+++.+||+||+.+...++. .+.++.+++++++++.++|.+..+..+ ..|
T Consensus 70 ~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~L 141 (240)
T d3dhwc1 70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 141 (240)
T ss_dssp CTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCC
T ss_pred EECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCH-----HHC
T ss_conf 208755511554166430225222799649999999999849---998999999999999769903554894-----349
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEE
Q ss_conf 989999999999995099677983999999999999999999999865-9889999548998899851548899139799
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 771 SgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|+++|++. ++...+|++++|. +|++
T Consensus 142 SGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~-~G~i 219 (240)
T d3dhwc1 142 SGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGEL 219 (240)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCEE
T ss_conf 9999989998640105898687446556589888567999999998646978999838999-9998699999997-9999
Q ss_pred EEECCCCC
Q ss_conf 99847998
Q 000937 850 IYSGPLGN 857 (1218)
Q Consensus 850 v~~G~~~~ 857 (1218)
++.|++++
T Consensus 220 v~~G~~~e 227 (240)
T d3dhwc1 220 IEQDTVSE 227 (240)
T ss_dssp EEEEETTT
T ss_pred EEECCHHH
T ss_conf 99879999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=337.96 Aligned_cols=219 Identities=22% Similarity=0.354 Sum_probs=188.2
Q ss_pred EEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEEC
Q ss_conf 99996999990670011100276654103210389996874999995999819999998969998983345999979708
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++.+|++++|+.. .....+|+|+|+.+++||+++|+||||||||||+++|+|..++. +|+|.++|.+.
T Consensus 2 I~i~nlsk~y~~~----------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~--sG~I~~~g~~i 69 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG----------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT--EGEVYIDNIKT 69 (230)
T ss_dssp EEEEEEEEEEEET----------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEEC
T ss_pred EEEEEEEEEECCC----------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCC--CCEEEECCEEC
T ss_conf 8999079994899----------82089871337788499799998899998216557506887777--66269999985
Q ss_pred CCC---C----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCC
Q ss_conf 500---1----22238895069988999989999999986103999994559999999999829876-433333588877
Q 000937 697 IQE---T----FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDG-IKESLVGIPGVS 768 (1218)
Q Consensus 697 ~~~---~----~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~g~~~~~ 768 (1218)
... . .++.++||+|++.+++.+||+||+.++...+.....+..++.+++.+.++.++|.+ ..+..+ .
T Consensus 70 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~ 144 (230)
T d1l2ta_ 70 NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----N 144 (230)
T ss_dssp TTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----G
T ss_pred CCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----H
T ss_conf 76885551231255577880412417686688877578887224789999999999998876242345534880-----2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 88989999999999995099677983999999999999999999999865-98899995489988998515488991397
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGG 847 (1218)
Q Consensus 769 ~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~~G 847 (1218)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|+|+++|++ ++.+.+|++++|. +|
T Consensus 145 ~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~-~G 221 (230)
T d1l2ta_ 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLK-DG 221 (230)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEE-TT
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCEEEEEE-CC
T ss_conf 38999999999875652278889946876546989999999999999984399999987888--9998699899998-99
Q ss_pred EEEEECCC
Q ss_conf 99998479
Q 000937 848 RIIYSGPL 855 (1218)
Q Consensus 848 ~~v~~G~~ 855 (1218)
+++..|++
T Consensus 222 ~Iv~~g~~ 229 (230)
T d1l2ta_ 222 EVEREEKL 229 (230)
T ss_dssp EEEEEEEC
T ss_pred EEEEECCC
T ss_conf 99995257
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=344.34 Aligned_cols=210 Identities=20% Similarity=0.322 Sum_probs=185.6
Q ss_pred EEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEEC
Q ss_conf 99996999990670011100276654103210389996874999995999819999998969998983345999979708
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
++.+|+++++. ..+|+|+|+.+++||+++|+||||||||||+++|+|..++. +|+|.++|++.
T Consensus 2 i~v~nlsk~y~---------------~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~--sG~I~~~G~~i 64 (229)
T d3d31a2 2 IEIESLSRKWK---------------NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDV 64 (229)
T ss_dssp EEEEEEEEECS---------------SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS--EEEEEETTEEC
T ss_pred EEEEEEEEEEC---------------CEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEEC
T ss_conf 89998999949---------------97884337898799899999899982999999996476888--78899956734
Q ss_pred CCC-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 500-1222388950699889999899999999861039999945599999999998298764333335888778898999
Q 000937 697 IQE-TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 697 ~~~-~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 775 (1218)
... ..++.++||+|+..+++++||+||+.|...++.. . ++++++++++.+++.+..|..+. .||||||
T Consensus 65 ~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~ 133 (229)
T d3d31a2 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---K---DPKRVLDTARDLKIEHLLDRNPL-----TLSGGEQ 133 (229)
T ss_dssp TTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---C---CHHHHHHHHHHTTCTTTTTSCGG-----GSCHHHH
T ss_pred CCCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCC---C---HHHHHHHHHHHHCCHHHHHCCHH-----HCCHHHH
T ss_conf 65216574056151211117466577888887764055---3---89999999998256555758955-----4799984
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 9999999995099677983999999999999999999999865-988999954899889985154889913979999847
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 776 krv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 854 (1218)
||++|||+|+.+|++|+|||||+|||+.++..+.+.+++++++ |.|||+++|++. ++...+|++++|. +|++++.|+
T Consensus 134 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~-~G~iv~~g~ 211 (229)
T d3d31a2 134 QRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVM-DGKLIQVGK 211 (229)
T ss_dssp HHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEES-SSCEEEEEC
T ss_pred CCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCEEEEECC
T ss_conf 01403043443677144347876799899999999999998647968999749999-9999699999997-999999869
Q ss_pred CC
Q ss_conf 99
Q 000937 855 LG 856 (1218)
Q Consensus 855 ~~ 856 (1218)
++
T Consensus 212 ~~ 213 (229)
T d3d31a2 212 PE 213 (229)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=334.18 Aligned_cols=214 Identities=25% Similarity=0.340 Sum_probs=192.0
Q ss_pred EEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEEC
Q ss_conf 99996999990670011100276654103210389996874999995999819999998969998983345999979708
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
+..+|++.++ +++++|+|+|+.+++||+++|+||||||||||+++|+|...+. +|+|.++|.+.
T Consensus 3 I~v~nl~k~y--------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~--~G~i~i~G~~i 66 (238)
T d1vpla_ 3 VVVKDLRKRI--------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGIVTVFGKNV 66 (238)
T ss_dssp EEEEEEEEEE--------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEET
T ss_pred EEEEEEEEEE--------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEEC
T ss_conf 8999589999--------------9999980625688489799999999999999999996698878--88799986724
Q ss_pred CC--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 50--0122238895069988999989999999986103999994559999999999829876433333588877889899
Q 000937 697 IQ--ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQ 774 (1218)
Q Consensus 697 ~~--~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 774 (1218)
.. ...++.++|+||++.+++++|+.|++.|.+.++. ....+..+.++.+++.+++.+..+..++ .+||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHH
T ss_conf 46839887218675001546878667788898998617---9989999999999986797888850453-----379989
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 99999999995099677983999999999999999999999865988999954899889985154889913979999847
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGP 854 (1218)
Q Consensus 775 rkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~ 854 (1218)
|||++||++|+.+|++++|||||+|||+.++..+.+++++++++|+|||+++|+++ ++...||++++|. +|++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~-~G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECC
T ss_conf 89999999986599988733798897989999999999999965998999959899-9999699999998-999999928
Q ss_pred CC
Q ss_conf 99
Q 000937 855 LG 856 (1218)
Q Consensus 855 ~~ 856 (1218)
++
T Consensus 217 ~~ 218 (238)
T d1vpla_ 217 VE 218 (238)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=335.46 Aligned_cols=217 Identities=23% Similarity=0.351 Sum_probs=185.7
Q ss_pred CEEEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 52899996999990670011100276654103210389996874999995999819999998969998983345999979
Q 000937 614 PITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
...++.+|++.+|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|..++. +|+|.++|
T Consensus 4 d~~Lev~~l~k~yg--------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~--~G~I~~~G 67 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG--------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ--KGKIIFNG 67 (240)
T ss_dssp SEEEEEEEEEEEET--------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETT
T ss_pred CEEEEEEEEEEEEC--------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECC
T ss_conf 60799961899989--------------988883025788899799999999985999999996788888--03898424
Q ss_pred EECCCCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCC
Q ss_conf 7085001----2223889506998899998999999998610399999455999999999982-9876433333588877
Q 000937 694 YPKIQET----FVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI-ELDGIKESLVGIPGVS 768 (1218)
Q Consensus 694 ~~~~~~~----~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~g~~~~~ 768 (1218)
++..... .+..++|++|+..+++.+||+||+.+.+..+. .....++.++++++.+ ++.+..+..++
T Consensus 68 ~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 138 (240)
T d1ji0a_ 68 QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGG----- 138 (240)
T ss_dssp EECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSS-----
T ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCHHHHHHCCHH-----
T ss_conf 4344660888887423556765545776369999998887327----8889999999999874176888758543-----
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCE
Q ss_conf 88989999999999995099677983999999999999999999999865988999954899889985154889913979
Q 000937 769 GLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGR 848 (1218)
Q Consensus 769 ~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~~G~ 848 (1218)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.+++++++|+||++++|++. ++.+.+|++++|. +|+
T Consensus 139 ~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~-~G~ 216 (240)
T d1ji0a_ 139 TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLE-TGQ 216 (240)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEE-TTE
T ss_pred HCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCE
T ss_conf 38999999999999998299874003988679999999999999999968998999958899-9999699999998-999
Q ss_pred EEEECCCCC
Q ss_conf 999847998
Q 000937 849 IIYSGPLGN 857 (1218)
Q Consensus 849 ~v~~G~~~~ 857 (1218)
+++.|++++
T Consensus 217 iv~~g~~~e 225 (240)
T d1ji0a_ 217 IVLEGKASE 225 (240)
T ss_dssp EEEEEEHHH
T ss_pred EEEECCHHH
T ss_conf 999848999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=332.57 Aligned_cols=216 Identities=23% Similarity=0.305 Sum_probs=187.1
Q ss_pred EEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEE
Q ss_conf 89999699999067001110027665410321038999687499999599981999999896999898334599997970
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|++.+|. ..++|+|||+.+++||+++|+||||||||||+++|+|..++. +|+|.+||++
T Consensus 2 ~Lev~nl~k~yg--------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~--~G~I~~~G~~ 65 (258)
T d1b0ua_ 2 KLHVIDLHKRYG--------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGAIIVNGQN 65 (258)
T ss_dssp CEEEEEEEEEET--------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEE
T ss_pred EEEEEEEEEEEC--------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCCEEECCEE
T ss_conf 699997899989--------------999881506688699799999899982999999997476678--9977999999
Q ss_pred CCCC----------------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-C
Q ss_conf 8500----------------1222388950699889999899999999861039999945599999999998298764-3
Q 000937 696 KIQE----------------TFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGI-K 758 (1218)
Q Consensus 696 ~~~~----------------~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~ 758 (1218)
.... ..++.++||+|++.+++.+||.|++.+...... .....+.++++.++++.+++.+. .
T Consensus 66 i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~ 143 (258)
T d1b0ua_ 66 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQ 143 (258)
T ss_dssp CCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ECCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 33677520000235176799974544899833231411010213656578762--9998999999999999829952443
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHC
Q ss_conf 33335888778898999999999999509967798399999999999999999999986598899995489988998515
Q 000937 759 ESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFD 838 (1218)
Q Consensus 759 ~~~~g~~~~~~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d 838 (1218)
+... ..|||||||||+||++|+.+|++|++||||+|||+.++..+.+.|++++++|.|||+++|++. ++...+|
T Consensus 144 ~~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~ad 217 (258)
T d1b0ua_ 144 GKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 217 (258)
T ss_dssp TSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred CCCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCC
T ss_conf 0682-----205677888989999984399878852455568878888998765541036883389948999-9998699
Q ss_pred EEEEEECCCEEEEECCCC
Q ss_conf 488991397999984799
Q 000937 839 ELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 839 ~~~~l~~~G~~v~~G~~~ 856 (1218)
++++|. +|++++.|+++
T Consensus 218 ri~vm~-~G~iv~~g~~~ 234 (258)
T d1b0ua_ 218 HVIFLH-QGKIEEEGDPE 234 (258)
T ss_dssp EEEEEE-TTEEEEEECHH
T ss_pred EEEEEE-CCEEEEECCHH
T ss_conf 999997-99999984999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=334.14 Aligned_cols=219 Identities=22% Similarity=0.297 Sum_probs=189.4
Q ss_pred EEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEE
Q ss_conf 89999699999067001110027665410321038999687499999599981999999896999898334599997970
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|++.++. ..++|+|||+.+++||+++|+||||||||||+++|+|..++. +|+|.++|++
T Consensus 4 iL~v~nlsk~yg--------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~--~G~I~~~g~~ 67 (254)
T d1g6ha_ 4 ILRTENIVKYFG--------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKD 67 (254)
T ss_dssp EEEEEEEEEEET--------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEE
T ss_pred EEEEEEEEEEEC--------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEE
T ss_conf 699977899979--------------968871217998899799999999984999999997797688--7379999996
Q ss_pred CCCCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 85001----22238895069988999989999999986103----------99999455999999999982987643333
Q 000937 696 KIQET----FVRVSGYCEQTDIHSPHITIEESLFFSAWLRL----------APQINSKTKADCVNHVLKTIELDGIKESL 761 (1218)
Q Consensus 696 ~~~~~----~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~----------~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 761 (1218)
..... .+..++|++|++.+++.+||.||+.++...+. ......++..++++++++.+++.+..++.
T Consensus 68 i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 147 (254)
T d1g6ha_ 68 ITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 147 (254)
T ss_dssp CTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCC
T ss_conf 64056999998338725776424788742321430133303450456654213532899999999998761963020595
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEE
Q ss_conf 35888778898999999999999509967798399999999999999999999986598899995489988998515488
Q 000937 762 VGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELI 841 (1218)
Q Consensus 762 ~g~~~~~~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~ 841 (1218)
++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.+++++++|.||++++|+++ ++.+.+|+++
T Consensus 148 ~~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~ 221 (254)
T d1g6ha_ 148 AG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLY 221 (254)
T ss_dssp GG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEE
T ss_pred HH-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEE
T ss_conf 35-----69918888999999997592723243976569999999999999999978998999947699-9998699999
Q ss_pred EEECCCEEEEECCCCC
Q ss_conf 9913979999847998
Q 000937 842 LLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 842 ~l~~~G~~v~~G~~~~ 857 (1218)
+|. +|+++..|++++
T Consensus 222 vm~-~G~iv~~g~~~e 236 (254)
T d1g6ha_ 222 VMF-NGQIIAEGRGEE 236 (254)
T ss_dssp EEE-TTEEEEEEESHH
T ss_pred EEE-CCEEEEEECHHH
T ss_conf 996-998999966899
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=328.16 Aligned_cols=216 Identities=24% Similarity=0.443 Sum_probs=174.7
Q ss_pred EEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEE
Q ss_conf 89999699999067001110027665410321038999687499999599981999999896999898334599997970
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++|+|++|+|+. ..+.+|+|+|+.+++||.+||+||||||||||+++|+|...+. +|+|.+||.+
T Consensus 1 eI~~~nvsf~Y~~------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g~~ 66 (241)
T d2pmka1 1 DITFRNIRFRYKP------------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE--NGQVLIDGHD 66 (241)
T ss_dssp EEEEEEEEEESST------------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEE
T ss_pred CEEEEEEEEEECC------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC--CCEEEECCEE
T ss_conf 9299999999089------------9960374248998499999999999998999999997357888--8899999999
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH--HHHH-HCCCCCCCCCCCCCCCCCC
Q ss_conf 850---012223889506998899998999999998610399999455999999--9999-8298764333335888778
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVN--HVLK-TIELDGIKESLVGIPGVSG 769 (1218)
Q Consensus 696 ~~~---~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~--~~l~-~l~l~~~~~~~~g~~~~~~ 769 (1218)
... ..+++.++||+|++.++ ..|++||+.+.. +..+.++..+..+ .+.+ ...+....++.++..+ ..
T Consensus 67 i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g-~~ 139 (241)
T d2pmka1 67 LALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG-AG 139 (241)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTT-TC
T ss_pred ECCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC-CC
T ss_conf 44002465535288982446557-840003522357-----554388899999997557888763201344327878-86
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEE
Q ss_conf 89899999999999950996779839999999999999999999998659889999548998899851548899139799
Q 000937 770 LSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRI 849 (1218)
Q Consensus 770 lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~ 849 (1218)
||||||||++|||+|+.+|++++||||||+||+.++..+++.|+++.+ ++|+|+++|+++ ....+|++++|. +|++
T Consensus 140 LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~-~G~I 215 (241)
T d2pmka1 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVME-KGKI 215 (241)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEE-TTEE
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEE-CCEE
T ss_conf 698898987544344416513556477655598999999999999858-998999978899--998499999998-9999
Q ss_pred EEECCCC
Q ss_conf 9984799
Q 000937 850 IYSGPLG 856 (1218)
Q Consensus 850 v~~G~~~ 856 (1218)
++.|+.+
T Consensus 216 v~~G~~~ 222 (241)
T d2pmka1 216 VEQGKHK 222 (241)
T ss_dssp EEEECHH
T ss_pred EEECCHH
T ss_conf 9988999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=324.84 Aligned_cols=218 Identities=23% Similarity=0.352 Sum_probs=176.7
Q ss_pred EEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEE
Q ss_conf 89999699999067001110027665410321038999687499999599981999999896999898334599997970
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|+|+.. ..+.+|+|+|+.+++||.+||+||||||||||+++|+|...+. +|+|.+||.+
T Consensus 11 ~I~~~nvsf~Y~~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~--~G~I~i~g~~ 77 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR-----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT--GGQLLLDGKP 77 (251)
T ss_dssp CEEEEEEEECCTTS-----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEE
T ss_pred EEEEEEEEEECCCC-----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEE
T ss_conf 69999989988999-----------9997674438998499899999999984999999986143787--6899889985
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 850---012223889506998899998999999998610399999455999-----999999982987643333358887
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKAD-----CVNHVLKTIELDGIKESLVGIPGV 767 (1218)
Q Consensus 696 ~~~---~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~g~~~~ 767 (1218)
... ..+++.++||+|++.+++ .||+||+.++.... .......+ ...+.+ ..+.+..++.++..+
T Consensus 78 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~----~~~~~~~~~~~~~~~~~~i--~~l~~g~~~~i~~~~- 149 (251)
T d1jj7a_ 78 LPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQK----PTMEEITAAAVKSGAHSFI--SGLPQGYDTEVDEAG- 149 (251)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSC----CCHHHHHHHHHHHTCHHHH--HTSTTGGGCBCCSSC-
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHH--HHCCCCCHHHHHCCC-
T ss_conf 311013788877654045650027-63465545421013----0278899999999899999--856121113675167-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECC
Q ss_conf 788989999999999995099677983999999999999999999999865-9889999548998899851548899139
Q 000937 768 SGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTG 846 (1218)
Q Consensus 768 ~~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~~ 846 (1218)
..||||||||++|||+|+.+|++++|||||++||+.+...+++.|+++.++ ++|+|+++|++ +..+.+|++++|. +
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~-~ 226 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLE-G 226 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEE-T
T ss_pred CCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEEE-C
T ss_conf 668954704899860445687078716757656853689999999997650698999995979--9998599999998-9
Q ss_pred CEEEEECCCCC
Q ss_conf 79999847998
Q 000937 847 GRIIYSGPLGN 857 (1218)
Q Consensus 847 G~~v~~G~~~~ 857 (1218)
|++++.|++++
T Consensus 227 G~iv~~Gt~~e 237 (251)
T d1jj7a_ 227 GAIREGGTHQQ 237 (251)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEECCHHH
T ss_conf 99999889999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=322.71 Aligned_cols=194 Identities=22% Similarity=0.398 Sum_probs=173.1
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCCC-CCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 0389996874999995999819999998969998983345999979708500-122238895069988999989999999
Q 000937 648 DVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQE-TFVRVSGYCEQTDIHSPHITIEESLFF 726 (1218)
Q Consensus 648 ~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~q~~~~~~~lTv~e~l~~ 726 (1218)
|+|+.+. +|+++|+||||||||||+++|+|..++. +|+|.+||.+.... ..++.++||+|++.++|++||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~--~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC--CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-9799999799980999999997399989--628999999988699899285225231443522015576665
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 98610399999455999999999982987643333358887788989999999999995099677983999999999999
Q 000937 727 SAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAA 806 (1218)
Q Consensus 727 ~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~ 806 (1218)
+. + ..+..+++++++++++.++|.+..+..+. .|||||||||+|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---36778899999999986383756657944-----48999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCC
Q ss_conf 999999999865-98899995489988998515488991397999984799
Q 000937 807 IVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 807 ~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 856 (1218)
.+.+.++++.++ |.|+|+++|++. ++...+|++++|. +|+++..|+++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~-~G~ii~~G~~~ 212 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVML-NGRIVEKGKLK 212 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECHH
T ss_conf 9999999998743976999818999-9999699999998-99999990699
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=328.45 Aligned_cols=216 Identities=25% Similarity=0.402 Sum_probs=173.3
Q ss_pred EEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEEC
Q ss_conf 99996999990670011100276654103210389996874999995999819999998969998983345999979708
Q 000937 617 MVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPK 696 (1218)
Q Consensus 617 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 696 (1218)
+++||++|+|+. .+.+|+|+|+.+++||.+||+||||||||||+++|+|...+. +|+|.+||.+.
T Consensus 2 le~knvsf~Y~~-------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g~~i 66 (242)
T d1mv5a_ 2 LSARHVDFAYDD-------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT--AGEITIDGQPI 66 (242)
T ss_dssp EEEEEEEECSSS-------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS--BSCEEETTEES
T ss_pred EEEEEEEEECCC-------------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC--CCEEEECCEEE
T ss_conf 799988998799-------------984142258998599999999999997999999999960989--87798899884
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH---HHCCCCCCCCCCCCCCCCCCC
Q ss_conf 50---012223889506998899998999999998610399999455999999999---982987643333358887788
Q 000937 697 IQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVL---KTIELDGIKESLVGIPGVSGL 770 (1218)
Q Consensus 697 ~~---~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l---~~l~l~~~~~~~~g~~~~~~l 770 (1218)
.. ..+++.++||+|++.+++. |++||+.+... .........+..+... ....+.+..++.++..+ ..|
T Consensus 67 ~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~L 140 (242)
T d1mv5a_ 67 DNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERG-VKI 140 (242)
T ss_dssp TTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTS-BCC
T ss_pred CCCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCC----CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCC
T ss_conf 424678887436797566545785-34543012445----554235677899999755542037421015236878-987
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEE
Q ss_conf 98999999999999509967798399999999999999999999986598899995489988998515488991397999
Q 000937 771 STEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRII 850 (1218)
Q Consensus 771 SgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~v 850 (1218)
|||||||++|||||+.+|++++|||||++||+.++..+++.|++++ +|+|+|+++|+++ ....+|++++|. +|+++
T Consensus 141 SGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G~iv 216 (242)
T d1mv5a_ 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KGQIT 216 (242)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TTEEC
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEE-CCEEE
T ss_conf 9999999999999852998999658865569889999988788871-7998999978799--998499999998-99999
Q ss_pred EECCCCC
Q ss_conf 9847998
Q 000937 851 YSGPLGN 857 (1218)
Q Consensus 851 ~~G~~~~ 857 (1218)
+.|++++
T Consensus 217 ~~G~~~e 223 (242)
T d1mv5a_ 217 GSGKHNE 223 (242)
T ss_dssp CCSCHHH
T ss_pred EECCHHH
T ss_conf 9999999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=313.39 Aligned_cols=214 Identities=20% Similarity=0.345 Sum_probs=173.6
Q ss_pred EEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEE
Q ss_conf 89999699999067001110027665410321038999687499999599981999999896999898334599997970
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++++|++|+|+. ....+|+|+|+.+++||.+||+||||||||||+++|+|...+. +|+|.+||.+
T Consensus 13 ~I~~~nvsf~Y~~------------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g~~ 78 (253)
T d3b60a1 13 DLEFRNVTFTYPG------------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID--EGHILMDGHD 78 (253)
T ss_dssp CEEEEEEEECSSS------------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS--EEEEEETTEE
T ss_pred EEEEEEEEEEECC------------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC--CCEEEECCCC
T ss_conf 7999988999299------------9976353328998599999999999985999999986216888--4689878801
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCC
Q ss_conf 850---0122238895069988999989999999986103999994559999999999829-------876433333588
Q 000937 696 KIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIE-------LDGIKESLVGIP 765 (1218)
Q Consensus 696 ~~~---~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~g~~ 765 (1218)
... ..+++.++||+|++.++. .|+++|+.++.. ...+.+ .++++++..+ +.+..++.++..
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~~----~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~ 149 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN 149 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred CCHHHHHHHHHEEEEEEECCCCCC-CCHHHHHHHCCC----CCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 211106654206879950254478-620243320572----208999----99999999817999973554410143488
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEEC
Q ss_conf 87788989999999999995099677983999999999999999999999865988999954899889985154889913
Q 000937 766 GVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 766 ~~~~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
+ ..||||||||++|||||+.+|++|+||||||+||+.++..+++.|+++.+ ++|+|+++|+++ ....+|++++|.
T Consensus 150 ~-~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~- 224 (253)
T d3b60a1 150 G-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVE- 224 (253)
T ss_dssp S-CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEE-
T ss_pred C-CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCEEEEEE-
T ss_conf 8-98499999999999999549988995164445898899999999987522-788999988799--998599999998-
Q ss_pred CCEEEEECCCCC
Q ss_conf 979999847998
Q 000937 846 GGRIIYSGPLGN 857 (1218)
Q Consensus 846 ~G~~v~~G~~~~ 857 (1218)
+|++++.|++++
T Consensus 225 ~G~Iv~~G~~~e 236 (253)
T d3b60a1 225 DGIIVERGTHSE 236 (253)
T ss_dssp TTEEEEEECHHH
T ss_pred CCEEEEECCHHH
T ss_conf 999999889999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=315.24 Aligned_cols=214 Identities=23% Similarity=0.389 Sum_probs=176.0
Q ss_pred EEEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCE
Q ss_conf 28999969999906700111002766541032103899968749999959998199999989699989833459999797
Q 000937 615 ITMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 615 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
-.++++|++|+|+. ....+|+|+|+.+++||.+||+||||||||||+++|+|...+. +|+|.+||.
T Consensus 15 g~I~~~nvsf~Y~~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g~ 80 (255)
T d2hyda1 15 GRIDIDHVSFQYND------------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT--SGQILIDGH 80 (255)
T ss_dssp CCEEEEEEEECSCS------------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS--EEEEEETTE
T ss_pred CEEEEEEEEEEECC------------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC--CCCCCCCCE
T ss_conf 87999988999599------------9976064438998399899998899980999999997127863--000153998
Q ss_pred ECCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-------CCCCCCCCCCCC
Q ss_conf 0850---012223889506998899998999999998610399999455999999999982-------987643333358
Q 000937 695 PKIQ---ETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTI-------ELDGIKESLVGI 764 (1218)
Q Consensus 695 ~~~~---~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~~g~ 764 (1218)
+... ..+++.++||+|++.+++ .||+||+.++. + ..+.+ .+.++++.. .+.+..++.++.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred ECCCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC----C-CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHCC
T ss_conf 7530788886341456510156899-87999985158----6-79999----9999999969799997362420103338
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE
Q ss_conf 88778898999999999999509967798399999999999999999999986598899995489988998515488991
Q 000937 765 PGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLK 844 (1218)
Q Consensus 765 ~~~~~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 844 (1218)
.+ ..||||||||++|||+|+.+|++++|||||++||+.+...+.+.|+++.+ ++|+|+++|+++ ....+|++++|.
T Consensus 151 ~g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~ 226 (255)
T d2hyda1 151 RG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIE 226 (255)
T ss_dssp GG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEE
T ss_pred CC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEE
T ss_conf 88-98499999999999998559989998376544797799999999998753-888999968999--998599999998
Q ss_pred CCCEEEEECCCCC
Q ss_conf 3979999847998
Q 000937 845 TGGRIIYSGPLGN 857 (1218)
Q Consensus 845 ~~G~~v~~G~~~~ 857 (1218)
+|+++..|+.++
T Consensus 227 -~G~iv~~G~~~e 238 (255)
T d2hyda1 227 -NGHIVETGTHRE 238 (255)
T ss_dssp -TTEEEEEECHHH
T ss_pred -CCEEEEECCHHH
T ss_conf -999999889999
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=294.22 Aligned_cols=196 Identities=24% Similarity=0.379 Sum_probs=168.5
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCC---CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 0321038999687499999599981999999896999898334599997970850---0122238895069988999989
Q 000937 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQ---ETFVRVSGYCEQTDIHSPHITI 720 (1218)
Q Consensus 644 ~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~q~~~~~~~lTv 720 (1218)
..|+++|+.+++||+++|+||||||||||+++|+|..+ .+|+|.++|++... .......+|++|+.......++
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCH
T ss_conf 15558888994898999998999809999999948879---955999999999869989998640245121357744209
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEE
Q ss_conf 999999986103999994559999999999829876433333588877889899999999999950-------9967798
Q 000937 721 EESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVA-------NPSIIFM 793 (1218)
Q Consensus 721 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrv~ia~~L~~-------~p~illl 793 (1218)
.+++.+... ...+.+.++++++.+++.+..+..+. .||||||||++||++|+. +|++++|
T Consensus 90 ~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llll 156 (231)
T d1l7vc_ 90 WHYLTLHQH--------DKTRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 156 (231)
T ss_dssp HHHHHHHCS--------CTTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHCCC--------HHHHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 887641001--------46689999999986598767676844-----56998899999999998517133899889997
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCC
Q ss_conf 3999999999999999999999865988999954899889985154889913979999847998
Q 000937 794 DEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 794 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 857 (1218)
||||+|||+.++..+.+.+++++++|.|||+++|+++ ++.+.+|++++|. +|++++.|++++
T Consensus 157 DEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~~e 218 (231)
T d1l7vc_ 157 DEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRREE 218 (231)
T ss_dssp SSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCHHH
T ss_conf 1877778989999999999999867999999967799-9999799999997-998999889999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-45 Score=292.63 Aligned_cols=193 Identities=21% Similarity=0.345 Sum_probs=154.8
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 41032103899968749999959998199999989699989833459999797085001222388950699889999899
Q 000937 642 KLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIE 721 (1218)
Q Consensus 642 ~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~lTv~ 721 (1218)
.+++|+|+|+.+++||++||+||||||||||+++|+|...+. +|+|.++| +++|++|++.+++ .||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~--~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS--EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC--CCEEEECC----------EEEEEECCCCCCC-CEEE
T ss_conf 976773759998599999999899982999999995797478--82899999----------9999816430267-6032
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHH---HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999998610399999455999999---9999829876433333588877889899999999999950996779839999
Q 000937 722 ESLFFSAWLRLAPQINSKTKADCVN---HVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT 798 (1218)
Q Consensus 722 e~l~~~~~l~~~~~~~~~~~~~~~~---~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrv~ia~~L~~~p~illlDEPts 798 (1218)
||+.++.. .......+..+ .......+.+..++.++..+ ..||||||||++|||+|+.+|++++|||||+
T Consensus 115 eni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 115 ENIIFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp HHHTTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred CCCCCCCC------CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 14203334------5605799999997769999846123323555542-3779999999999999986963513338554
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCC
Q ss_conf 99999999999999999865988999954899889985154889913979999847998
Q 000937 799 GLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLGN 857 (1218)
Q Consensus 799 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~~ 857 (1218)
+||+.+...+++.+......++|+|+++|++ +....+|++++|. +|++++.|++++
T Consensus 188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~-~G~i~~~Gt~~e 243 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILH-QGSSYFYGTFSE 243 (281)
T ss_dssp SSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEE-TTEEEEEECHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEE-CCEEEEECCHHH
T ss_conf 4898999999999998862899999992528--9998599999998-999999878999
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.2e-42 Score=273.91 Aligned_cols=195 Identities=24% Similarity=0.327 Sum_probs=158.9
Q ss_pred EEEEEEEEEEEECCCHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEE
Q ss_conf 89999699999067001110027665410321038999687499999599981999999896999898334599997970
Q 000937 616 TMVFQDLQYSIDTPLEMRRRECGLAHKLQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 616 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 695 (1218)
.++.+|+++.++ +++|+|+|+.+++||+++|+||||||||||+++|+|..++. +|+|.+||++
T Consensus 2 ~lev~~ls~~y~---------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~--~G~I~~~g~~ 64 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL--KGEIIYNGVP 64 (200)
T ss_dssp EEEEEEEEEESS---------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEE
T ss_pred EEEEEEEEEEEC---------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC--CCEEEECCEE
T ss_conf 599998999939---------------92884208898599899999999971999999996620567--7889999896
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 85001222388950699889999899999999861039999945599999999998298764333335888778898999
Q 000937 696 KIQETFVRVSGYCEQTDIHSPHITIEESLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR 775 (1218)
Q Consensus 696 ~~~~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 775 (1218)
... .+..++|++|+..+...+|++|++.+.+.++... .. ++.+.+.++.+++.+..+ .+ ..||||||
T Consensus 65 i~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~-~~-----~~LSgG~~ 131 (200)
T d1sgwa_ 65 ITK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VN----KNEIMDALESVEVLDLKK-KL-----GELSQGTI 131 (200)
T ss_dssp GGG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CC----HHHHHHHHHHTTCCCTTS-BG-----GGSCHHHH
T ss_pred HHH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CC----HHHHHHHHHHCCCCCCCC-CC-----CCCCCCHH
T ss_conf 267--3670899950135788828999999999754886-37----999999998748856301-26-----86897188
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEEC
Q ss_conf 9999999995099677983999999999999999999999865-988999954899889985154889913
Q 000937 776 KRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADT-GRTIVCTIHQPSIDIFESFDELILLKT 845 (1218)
Q Consensus 776 krv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~ 845 (1218)
||++||++|+.+|++++|||||+|||+.++..+++.++++.++ +.++|++.|+. ..||.+..|.+
T Consensus 132 qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 132 RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHH-----HHCCHHHHEEE
T ss_conf 8899999886499899986862016999999999999999867999999991625-----44161234010
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.2e-42 Score=270.55 Aligned_cols=187 Identities=20% Similarity=0.286 Sum_probs=162.6
Q ss_pred CCCCCCCCCCCHHHCCCCE---EEEEEEEECCCCCCCCC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9889989882021002130---39989998885067765-5303886645324588898899999774303788741356
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV-PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g---~~~G~I~lnG~~~~~~~-~r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l~ 78 (1218)
.+.|+.||||||+.+...| ..+|+|.+||.++++.. .++-.+||+|++.++|.+||+||+.|.+.+++.
T Consensus 36 ~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~------- 108 (239)
T d1v43a3 36 VLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF------- 108 (239)
T ss_dssp EEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC-------
T ss_pred EEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCCC-------
T ss_conf 9999999829999999975899987879991641354770001589980033534222099999999987399-------
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 43214667410499988235777767655311000899999828864244300278677677232210347777730996
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p~ 158 (1218)
++++.+ ..++++++.+||++.+|..+ +.||||||||++|||+++.+|
T Consensus 109 ---~~~~~~------------------------~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRvaiAraL~~~P- 155 (239)
T d1v43a3 109 ---PKDEID------------------------KRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEP- 155 (239)
T ss_dssp ---CHHHHH------------------------HHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCC-
T ss_pred ---CHHHHH------------------------HHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHCCCC-
T ss_conf ---999999------------------------99999998759855660995-----469999988999976640499-
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
+||+|||||+|||+.++..+++.++++.+..|+|++++.| -..++..++|+|++|.+|++++.|+++++..
T Consensus 156 ~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTH-d~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 156 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH-DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 8243068866689899989999999998731980799948-9999998699999998999999859999986
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-42 Score=269.69 Aligned_cols=187 Identities=20% Similarity=0.310 Sum_probs=162.5
Q ss_pred CCCCCCCCCCCHHHCCCCEE---EEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 98899898820210021303---99899988850677655-303886645324588898899999774303788741356
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g~---~~G~I~lnG~~~~~~~~-r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l~ 78 (1218)
.+.|+.|||||||.+...|. .+|+|++||.++.+... ++-.+||+|++.+++.+||+||+.|++.+++..
T Consensus 30 ~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~------ 103 (232)
T d2awna2 30 VFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK------ 103 (232)
T ss_dssp EEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC--------------------------
T ss_pred EEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC------
T ss_conf 99989998299999999658788888899999977888644432223433420264333788978999875998------
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 43214667410499988235777767655311000899999828864244300278677677232210347777730996
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p~ 158 (1218)
+++.+ ..++.+++.++|++.+|..+. .||||||||++|||+++.+|
T Consensus 104 ----~~~~~------------------------~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQRvaiAraL~~~P- 149 (232)
T d2awna2 104 ----KEVIN------------------------QRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEP- 149 (232)
T ss_dssp -----CHHH------------------------HHHHHHHHHC--------------------------CHHHHHHTCC-
T ss_pred ----HHHHH------------------------HHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCC-
T ss_conf ----89999------------------------999999975788656648965-----69999999999999970399-
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
++|+|||||+|||+.++..+++.++++.+..|+|+|++.| -..++..++|++++|.+|+++++|+++++..
T Consensus 150 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTH-d~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 8899758887889889989999999998742987999948-9999999699999997999999808999973
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.3e-41 Score=267.56 Aligned_cols=187 Identities=22% Similarity=0.283 Sum_probs=161.3
Q ss_pred CCCCCCCCCCCHHHCCCCEE---EEEEEEECCCCCCCCCC-------CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 98899898820210021303---99899988850677655-------303886645324588898899999774303788
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-------QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVG 72 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g~---~~G~I~lnG~~~~~~~~-------r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~ 72 (1218)
.+.|+.||||||+.+...|. .+|+|.+||.++.+... ++..+||+|++.++|.+||+||+.|...+++.
T Consensus 33 ~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~- 111 (240)
T d1g2912 33 ILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV- 111 (240)
T ss_dssp EEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC-
T ss_pred EEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCC-
T ss_conf 9999999809999999964878898989999998035664442453225512002212223101166763306877299-
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 74135643214667410499988235777767655311000899999828864244300278677677232210347777
Q 000937 73 SRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGRE 152 (1218)
Q Consensus 73 ~~~~l~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~e 152 (1218)
++++.+ ..++++++.+||++.+|.+++ .||||||||++|||+
T Consensus 112 ---------~~~e~~------------------------~~v~~~l~~~~l~~~~~~~p~-----~LSGGqkQRv~IAra 153 (240)
T d1g2912 112 ---------PRQEID------------------------QRVREVAELLGLTELLNRKPR-----ELSGGQRQRVALGRA 153 (240)
T ss_dssp ---------CHHHHH------------------------HHHHHHHHHHTCGGGTTCCGG-----GSCHHHHHHHHHHHH
T ss_pred ---------CHHHHH------------------------HHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHH
T ss_conf ---------989999------------------------999999987599667629933-----499999999999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 730996288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 153 MLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 153 li~~p~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
++.+| +||++||||+|||+.+...+++.++++.+..|.|||++.| -..++..++|++++|.+|++++.|+++++..
T Consensus 154 L~~~P-~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-d~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 154 IVRKP-QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH-DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHTCC-SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCC-CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 82699-8898258876569899989999999998636988999959-9999999699999998999999859999982
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.2e-41 Score=267.88 Aligned_cols=185 Identities=22% Similarity=0.331 Sum_probs=159.0
Q ss_pred CCCCCCCCCCCHHHCCCCEE---EEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 98899898820210021303---99899988850677655-303886645324588898899999774303788741356
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP-QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g~---~~G~I~lnG~~~~~~~~-r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l~ 78 (1218)
.+.|+.||||||+.+...|. .+|+|.+||.++.+... ++-.+||+|++.++|.+||+||+.|+.+..
T Consensus 28 ~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~--------- 98 (240)
T d2onka1 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV--------- 98 (240)
T ss_dssp EEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---------
T ss_pred EEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHHHCCC---------
T ss_conf 99979998099999999739998962899999998869989928522523144352201557666532336---------
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 43214667410499988235777767655311000899999828864244300278677677232210347777730996
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p~ 158 (1218)
++.+.+ ..+.++++.+||.+.+|.++. .|||||||||+|||+++.+|
T Consensus 99 ---~~~~~~------------------------~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P- 145 (240)
T d2onka1 99 ---ERVERD------------------------RRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQP- 145 (240)
T ss_dssp ---CHHHHH------------------------HHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCC-
T ss_pred ---CHHHHH------------------------HHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCC-
T ss_conf ---778899------------------------999999986383756657944-----48999989999987775167-
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
+||+|||||||||+.++..+++.++++.+..|+|++++.| ...++...+|++++|.+|+++++|+++++..
T Consensus 146 ~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtH-d~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 146 RLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH-DLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEEECHHHHHC
T ss_conf 7067528655588799999999999998743976999818-9999999699999998999999906999832
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.5e-41 Score=265.86 Aligned_cols=187 Identities=18% Similarity=0.256 Sum_probs=160.5
Q ss_pred CCCCCCCCCCCHHHCCCCE---EEEEEEEECCCCCCCCC------CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 9889989882021002130---39989998885067765------53038866453245888988999997743037887
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV------PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g---~~~G~I~lnG~~~~~~~------~r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~ 73 (1218)
.+.|+.||||||+.+...| ..+|+|.+||.++.... .|+-.+||.|+..++|.+||+||+.|+.+.++.
T Consensus 35 ~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~-- 112 (242)
T d1oxxk2 35 GILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM-- 112 (242)
T ss_dssp EEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSC--
T ss_pred EEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCC--
T ss_conf 999899980999999997586888745999999951373111531204514773043346666577776655676137--
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 41356432146674104999882357777676553110008999998288642443002786776772322103477777
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~l~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~el 153 (1218)
++++.+ ..++++++.+||++.+|.+++ .||||||||++|||++
T Consensus 113 --------~~~~~~------------------------~~v~~~l~~~gL~~~~~~~p~-----~LSGGqkQRvaiARaL 155 (242)
T d1oxxk2 113 --------SKEEIR------------------------KRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVALARAL 155 (242)
T ss_dssp --------CHHHHH------------------------HHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHH
T ss_pred --------CHHHHH------------------------HHHHHHHHHCCHHHHHHCCHH-----HCCHHHHHHHHHHHHH
T ss_conf --------999999------------------------999999866591766648954-----5999998589987577
Q ss_pred HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 30996288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 i~~p~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
+.+| +||++||||+|||+.++..+++.++++.+..|.|+|++.|. ..++..++|++++|.+|++++.|+++++..
T Consensus 156 ~~~P-~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd-~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 156 VKDP-SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp TTCC-SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCC-CCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 6046-61454478667998998899899999986359879999799-999999699999998999999869999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.6e-41 Score=265.75 Aligned_cols=184 Identities=21% Similarity=0.306 Sum_probs=160.2
Q ss_pred CCCCCCCCCCCHHHCCCCE---EEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9889989882021002130---399899988850677655-303886645324588898899999774303788741356
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVP-QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g---~~~G~I~lnG~~~~~~~~-r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l~ 78 (1218)
.+.|+.||||||+.+...| ..+|+|++||.++++... ++-.+||+|++.++|.+||+||+.|+..+++...
T Consensus 30 ~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~----- 104 (229)
T d3d31a2 30 VILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD----- 104 (229)
T ss_dssp EEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC-----
T ss_pred EEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCH-----
T ss_conf 999899982999999996476888788999567346521657405615121111746657788888776405538-----
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 43214667410499988235777767655311000899999828864244300278677677232210347777730996
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p~ 158 (1218)
+..++++++.++|.+..|..++ .||||||||++|||+++.+|
T Consensus 105 --------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~QRvaiAraL~~~P- 146 (229)
T d3d31a2 105 --------------------------------PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARALVTNP- 146 (229)
T ss_dssp --------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHTTSCC-
T ss_pred --------------------------------HHHHHHHHHHHCCHHHHHCCHH-----HCCHHHHCCHHHHHHHHCCC-
T ss_conf --------------------------------9999999998256555758955-----47999840140304344367-
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 159 ~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
+||+|||||||||+.+...+++.++++.+..|.||+++.| -..++..++|++++|.+|+++++|+++++..
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtH-d~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH-DQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES-CHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 7144347876799899999999999998647968999749-9999999699999997999999869999986
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-41 Score=266.81 Aligned_cols=187 Identities=23% Similarity=0.371 Sum_probs=153.6
Q ss_pred CCCCCCCCCCHHHCCCCEE---EEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf 8899898820210021303---99899988850677655---30388664532458889889999977430378874135
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVP---QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~g~~~~~l~~~~~g~---~~G~I~lnG~~~~~~~~---r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l 77 (1218)
+.|+.|||||||.+...|. .+|+|.+||.++.+.+. |+..+||+|++.+|+ .||+||+.|+..-.
T Consensus 34 IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~-------- 104 (241)
T d2pmka1 34 IVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGM-------- 104 (241)
T ss_dssp EECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTSTTC--------
T ss_pred EECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEEEEECCCCCCC-CCCCCCCCCCCCCC--------
T ss_conf 999999989999999973578888899999999440024655352889824465578-40003522357554--------
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 64321466741049998823577776765531100089999982886424430027867767723221034777773099
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p 157 (1218)
..+++..+++.+.++.++..++. ..+|.+|+.. +.||||||||++|||+++.+|
T Consensus 105 --------------~~~~~~~~~~~~~~~~~i~~~~~-----------~~~t~i~~~g-~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 105 --------------SVEKVIYAAKLAGAHDFISELRE-----------GYNTIVGEQG-AGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp --------------CHHHHHHHHHHHTCHHHHTTSTT-----------GGGSBCSTTT-TCCCHHHHHHHHHHHHHTTCC
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHCCCCC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf --------------38889999999755788876320-----------1344327878-866988989875443444165
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 6288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
+|++||||||+||+.++..+++.++++.+ ++|+|+..|++ ++...+|+|++|.+|+++++|++++++.
T Consensus 159 -~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 159 -KILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRL--STVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp -SEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSG--GGGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred -CHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCH--HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf -13556477655598999999999999858--99899997889--9998499999998999999889999982
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.2e-41 Score=266.18 Aligned_cols=187 Identities=25% Similarity=0.364 Sum_probs=154.0
Q ss_pred CCCCCCCCCCHHHCCCCE---EEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf 889989882021002130---39989998885067765---530388664532458889889999977430378874135
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~g~~~~~l~~~~~g---~~~G~I~lnG~~~~~~~---~r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l 77 (1218)
+.|+.|||||||.+...| ..+|+|.+||.++++.. +|+..+||+|++.+|+ .||+||+.|+....
T Consensus 49 ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~~~~-------- 119 (255)
T d2hyda1 49 FVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPTA-------- 119 (255)
T ss_dssp EECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCSSC--------
T ss_pred EECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCCCCC--------
T ss_conf 988999809999999971278630001539987530788886341456510156899-87999985158679--------
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 64321466741049998823577776765531100089999982886424430027867767723221034777773099
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p 157 (1218)
.++++.++++.+.++.++.+++ +..||.+|+.. ..||||||||++|||+++.+|
T Consensus 120 --------------~~~~~~~al~~~~l~~~i~~lp-----------~gl~t~i~~~g-~~LSgGq~QRi~iARal~~~p 173 (255)
T d2hyda1 120 --------------TDEEVVEAAKMANAHDFIMNLP-----------QGYDTEVGERG-VKLSGGQKQRLSIARIFLNNP 173 (255)
T ss_dssp --------------CHHHHHHHHHHTTCHHHHHTST-----------TGGGCBCCGGG-TTSCHHHHHHHHHHHHHHHCC
T ss_pred --------------CHHHHHHHHHHHCCHHHHHHCC-----------CCCCCHHCCCC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf --------------9999999999969799997362-----------42010333888-984999999999999985599
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 6288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
+|++||||||+||+.++..+++.++++.+ ++|+|+..|++ +....+|+|++|.+|++++.|+++++++
T Consensus 174 -~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~--~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 174 -PILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRL--STITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp -SEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSG--GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred -CEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCH--HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf -89998376544797799999999998753--88899996899--9998599999998999999889999986
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.4e-41 Score=263.36 Aligned_cols=187 Identities=20% Similarity=0.242 Sum_probs=160.2
Q ss_pred CCCCCCCCCCCHHHCCCCE---EEEEEEEECCCCCCCCCC------CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 9889989882021002130---399899988850677655------3038866453245888988999997743037887
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVP------QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGS 73 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g---~~~G~I~lnG~~~~~~~~------r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~ 73 (1218)
.+.|+.|||||||.+...| ..+|+|.+||.++..... |+-.+||+|+..+++.+||+||+.|+.++++..
T Consensus 35 ~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~- 113 (240)
T d3dhwc1 35 GVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP- 113 (240)
T ss_dssp EEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCC-
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-
T ss_conf 9989998988899998758863667732886768520875551155416643022522279964999999999984999-
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 41356432146674104999882357777676553110008999998288642443002786776772322103477777
Q 000937 74 RADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREM 153 (1218)
Q Consensus 74 ~~~l~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~el 153 (1218)
+++. +..++.+++.+||++.+|..++ .||||||||++|||++
T Consensus 114 ---------~~~~------------------------~~~v~~~L~~vgL~~~~~~~~~-----~LSGG~~QRvaiAraL 155 (240)
T d3dhwc1 114 ---------KDEV------------------------KRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQRVAIARAL 155 (240)
T ss_dssp ---------TTHH------------------------HHHHHHHHHHHSTTTTTSSCBS-----CCCHHHHHHHHHHHHH
T ss_pred ---------HHHH------------------------HHHHHHHHHHCCCCHHHHCCHH-----HCCHHHHHHHHHHHHH
T ss_conf ---------8999------------------------9999999997699035548943-----4999999899986401
Q ss_pred HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 30996288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 154 LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 154 i~~p~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
+.+| ++|++||||+|||+.++..+++.++++.+..|.|++++.| ...++...+|++++|.+|++++.|+++++..
T Consensus 156 ~~~P-~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-dl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 156 ASNP-KVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH-EMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HTCC-SEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBS-CHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred CCCC-CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 0589-8687446556589888567999999998646978999838-9999998699999997999999879999972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-41 Score=264.57 Aligned_cols=190 Identities=20% Similarity=0.288 Sum_probs=152.5
Q ss_pred CCCCCCCCCCHHHCCCCE---EEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf 889989882021002130---399899988850677655---30388664532458889889999977430378874135
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVP---QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~g~~~~~l~~~~~g---~~~G~I~lnG~~~~~~~~---r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l 77 (1218)
+.|+.|||||||.+...| ..+|+|++||.++++.+. |+..+||+|++.+|+ .||+||+.|+...+.
T Consensus 45 ivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~------- 116 (251)
T d1jj7a_ 45 LVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKP------- 116 (251)
T ss_dssp EECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCC-------
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCC-------
T ss_conf 999999849999999861437876899889985311013788877654045650027-634655454210130-------
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 64321466741049998823577776765531100089999982886424430027867767723221034777773099
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p 157 (1218)
+. .++..+.+.+.++.++. +|.+..+|.+|+. ...||||||||++|||+++.+|
T Consensus 117 ----~~----------~~~~~~~~~~~~~~~i~-----------~l~~g~~~~i~~~-~~~LSGGqkQRvaiARal~~~p 170 (251)
T d1jj7a_ 117 ----TM----------EEITAAAVKSGAHSFIS-----------GLPQGYDTEVDEA-GSQLSGGQRQAVALARALIRKP 170 (251)
T ss_dssp ----CH----------HHHHHHHHHHTCHHHHH-----------TSTTGGGCBCCSS-CSSSCHHHHHHHHHHHHHTTCC
T ss_pred ----HH----------HHHHHHHHHHHHHHHHH-----------HCCCCCHHHHHCC-CCCCCHHHCEEEEEEECCCCCC
T ss_conf ----27----------88999999998999998-----------5612111367516-7668954704899860445687
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 6288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
+|++||||||+||+.++..+++.|+++.+..++|+++..|+ .++.+.+|+|++|.+|+++++|+|+++++
T Consensus 171 -~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~--l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 171 -CVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp -SEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSC--HHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred -CEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC--HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf -07871675765685368999999999765069899999597--99998599999998999999889999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-39 Score=255.18 Aligned_cols=184 Identities=23% Similarity=0.278 Sum_probs=152.7
Q ss_pred CCCCCCCCCCCHHHCCCCEE---EEEEEEECCCCCCCCCCC-------CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 98899898820210021303---998999888506776553-------03886645324588898899999774303788
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQ-------KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVG 72 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g~---~~G~I~lnG~~~~~~~~r-------~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~ 72 (1218)
.+.|+.|||||||.+...|. .+|+|++||.++.....+ +..+||.|++.++|.+||+||+.|+...+..+
T Consensus 35 ~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~ 114 (230)
T d1l2ta_ 35 SIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG 114 (230)
T ss_dssp EEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSS
T ss_pred EEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 99889999821655750688777766269999985768855512312555778804124176866888775788872247
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 74135643214667410499988235777767655311000899999828864-24430027867767723221034777
Q 000937 73 SRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDI-CADTLVGDAIRRGISGGQKRRLTTGR 151 (1218)
Q Consensus 73 ~~~~l~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~-~~dT~VG~~~~rGLSGGqKkRlSIA~ 151 (1218)
. .+.++.. ..+...++.+||.+ .+|.++. .||||||||++|||
T Consensus 115 ~-------~~~~~~~------------------------~~~~~~l~~~~L~~~~~~~~p~-----~LSGGqkQRvaIAr 158 (230)
T d1l2ta_ 115 A-------MSGEERR------------------------KRALECLKMAELEERFANHKPN-----QLSGGQQQRVAIAR 158 (230)
T ss_dssp C-------CCHHHHH------------------------HHHHHHHHHTTCCGGGTTCCGG-----GSCHHHHHHHHHHH
T ss_pred C-------CCHHHHH------------------------HHHHHHHHHHCHHHHHHCCCHH-----HCCHHHHHHHHHHH
T ss_conf 8-------9999999------------------------9999988762423455348802-----38999999999875
Q ss_pred HHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCH
Q ss_conf 77309962887527998847366999999999997724997999961699357820140889819818876482
Q 000937 152 EMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPR 225 (1218)
Q Consensus 152 eli~~p~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~ 225 (1218)
+++.+| +||++||||||||+.++..+++.++++.+..|+|+|++.|.+ +....+|++++|.+|++++.|+.
T Consensus 159 aL~~~P-~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 159 ALANNP-PIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHTTCC-SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHCCC-CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCEEEEEECCEEEEECCC
T ss_conf 652278-889946876546989999999999999984399999987888--99986998999989999995257
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3e-40 Score=259.32 Aligned_cols=188 Identities=23% Similarity=0.350 Sum_probs=152.8
Q ss_pred CCCCCCCCCCHHHCCCCE---EEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf 889989882021002130---399899988850677655---30388664532458889889999977430378874135
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVP---QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~g~~~~~l~~~~~g---~~~G~I~lnG~~~~~~~~---r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l 77 (1218)
+.|+.|||||||.+...| ..+|+|++||.++.+... |+..+||+|++.+|. .|++||+.|+....
T Consensus 46 ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~~~~-------- 116 (253)
T d3b60a1 46 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYARTEE-------- 116 (253)
T ss_dssp EEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTTSC--------
T ss_pred EECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHEEEEEEECCCCCC-CCHHHHHHHCCCCC--------
T ss_conf 999999859999999862168884689878801211106654206879950254478-62024332057220--------
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 64321466741049998823577776765531100089999982886424430027867767723221034777773099
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p 157 (1218)
..+++++++++.+.++.++..++ +..+|.+|+. ...||||||||++|||+++.+|
T Consensus 117 -------------~~~~~i~~a~~~~~l~~~i~~l~-----------~gl~t~~~~~-~~~LSGGqkQRvaiARal~~~p 171 (253)
T d3b60a1 117 -------------YSREQIEEAARMAYAMDFINKMD-----------NGLDTIIGEN-GVLLSGGQRQRIAIARALLRDS 171 (253)
T ss_dssp -------------CCHHHHHHHHHTTTCHHHHHHST-----------TGGGSBCCTT-SCSSCHHHHHHHHHHHHHHHCC
T ss_pred -------------CCHHHHHHHHHHHHHHHHHHHCC-----------CCCHHHHCCC-CCCCCHHHHHHHHHHHHHHCCC
T ss_conf -------------89999999999981799997355-----------4410143488-8984999999999999995499
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 6288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+++.|+++.+ ++|+|+..|++ ++...+|+|++|.+|+++++|++++++.
T Consensus 172 -~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 172 -PILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp -SEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCG--GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred -CEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCH--HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf -88995164445898899999999987522--78899998879--9998599999998999999889999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.8e-41 Score=265.54 Aligned_cols=188 Identities=24% Similarity=0.323 Sum_probs=151.2
Q ss_pred CCCCCCCCCCHHHCCCCEE---EEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf 8899898820210021303---9989998885067765---530388664532458889889999977430378874135
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFV---PQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 4 ~~~~~g~~~~~l~~~~~g~---~~G~I~lnG~~~~~~~---~r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l 77 (1218)
+.|+.|||||||.+...|. .+|+|.+||.++++.. +|+..+||+|++.+|+. ||+||+.++.....
T Consensus 33 ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~------- 104 (242)
T d1mv5a_ 33 FAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDY------- 104 (242)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSCS-------
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCCCCC-------
T ss_conf 9999999799999999996098987798899884424678887436797566545785-34543012445554-------
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 64321466741049998823577776765531100089999982886424430027867767723221034777773099
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGP 157 (1218)
Q Consensus 78 ~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p 157 (1218)
+ ++++..+.+.+..+.++.. +.+..+|.+|+.+ ..||||||||++|||+++.+|
T Consensus 105 ----~----------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~i~~~g-~~LSGGqkQRv~iARal~~~p 158 (242)
T d1mv5a_ 105 ----T----------DEDLWQVLDLAFARSFVEN-----------MPDQLNTEVGERG-VKISGGQRQRLAIARAFLRNP 158 (242)
T ss_dssp ----C----------HHHHHHHHHHHTCTTTTTS-----------STTGGGCEESTTS-BCCCHHHHHHHHHHHHHHHCC
T ss_pred ----C----------HHHHHHHHHHHHHHHHHCC-----------CCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf ----2----------3567789999975554203-----------7421015236878-987999999999999985299
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 6288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 158 IKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 158 ~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
+||+||||||+||+.++..+++.++++++ ++|+|+..|+ .+....+|+|++|.+|+++++|+++++++
T Consensus 159 -~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~--l~~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 159 -KILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp -SEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCS--HHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred -CEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECC--HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf -89996588655698899999887888717--9989999787--99998499999998999999999999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.9e-38 Score=248.34 Aligned_cols=199 Identities=23% Similarity=0.304 Sum_probs=158.7
Q ss_pred CCCCCCCCCCCHHHCCCCEE---EEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCH
Q ss_conf 98899898820210021303---998999888506776553----03886645324588898899999774303788741
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQ----KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRA 75 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g~---~~G~I~lnG~~~~~~~~r----~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~ 75 (1218)
.|.|+.|||||||.+...|. .+|+|+++|.+++....+ .-.+||+|+..+++.+||+||+.+++..++.....
T Consensus 34 ~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~ 113 (254)
T d1g6ha_ 34 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLN 113 (254)
T ss_dssp EEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHH
T ss_pred EEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHH
T ss_conf 99999998499999999779768873799999966405699999833872577642478874232143013330345045
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 35643214667410499988235777767655311000899999828864244300278677677232210347777730
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLV 155 (1218)
Q Consensus 76 ~l~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~ 155 (1218)
.+.. + .. .++. ++ ....+..+++.+++.+.+|..+++ ||||||||++|||+++.
T Consensus 114 ~~~~----~---~~-~~~~--~~-----------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~Qrv~iAraL~~ 167 (254)
T d1g6ha_ 114 SLFY----K---KW-IPKE--EE-----------MVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167 (254)
T ss_dssp HHHH----C---SS-CCCC--HH-----------HHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHT
T ss_pred HHHH----H---CC-CCCH--HH-----------HHHHHHHHHHHCCCCHHCCCCHHH-----CCCHHHHHHHHHHHHHH
T ss_conf 6654----2---13-5328--99-----------999999998761963020595356-----99188889999999975
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 996288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 156 GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 156 ~p~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
+| ++|+|||||+|||+.++..+++.+++++. .|+||+++.| ...++...+|++++|.+|+++..|+++++..
T Consensus 168 ~P-~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vsH-dl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 168 NP-KMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEH-RLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp CC-SEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECS-CCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred CC-CCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 92-72324397656999999999999999997-8998999947-6999998699999996998999966899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.8e-38 Score=246.48 Aligned_cols=187 Identities=25% Similarity=0.276 Sum_probs=160.7
Q ss_pred CCCCCCCCCCHHHCCCCEE---EEEEEEECCCCCCCC--CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 8899898820210021303---998999888506776--55303886645324588898899999774303788741356
Q 000937 4 LNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEF--VPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADIL 78 (1218)
Q Consensus 4 ~~~~~g~~~~~l~~~~~g~---~~G~I~lnG~~~~~~--~~r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l~ 78 (1218)
|.|+.|||||||.+...|. .+|+|.++|.++.+. ..++..+||+|++.+++++||.|++.|.+.+++..
T Consensus 33 lvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~------ 106 (238)
T d1vpla_ 33 LIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS------ 106 (238)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC------
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCC------
T ss_conf 99999999999999996698878887999867244683988721867500154687866778889899861799------
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 43214667410499988235777767655311000899999828864244300278677677232210347777730996
Q 000937 79 LELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPI 158 (1218)
Q Consensus 79 ~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p~ 158 (1218)
+.+. +..++.+++.++|.+..+.+++ .+|||||||++|||+++.+|
T Consensus 107 ----~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~al~~~p- 152 (238)
T d1vpla_ 107 ----SSEI------------------------EEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNP- 152 (238)
T ss_dssp ----HHHH------------------------HHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCC-
T ss_pred ----HHHH------------------------HHHHHHHHHHCCCHHHHHHHHH-----HCCHHHHHHHHHHHHHHCCC-
T ss_conf ----8999------------------------9999999986797888850453-----37998989999999986599-
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHHHH
Q ss_conf 28875279988473669999999999977249979999616993578201408898198188764822489997
Q 000937 159 KAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLEFF 232 (1218)
Q Consensus 159 ~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~~f 232 (1218)
+||+|||||+|||+.+...+++.++++++ .|+||+++.| ...++...+|++++|.+|++++.|+++++.+.+
T Consensus 153 ~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH-~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 153 RLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSH-NMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEEC-CHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 98873379889798999999999999996-5998999959-899999969999999899999992899998652
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.8e-38 Score=248.38 Aligned_cols=185 Identities=22% Similarity=0.317 Sum_probs=152.1
Q ss_pred CCCCCCCCCCCHHHCCCCEE---EEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCH
Q ss_conf 98899898820210021303---998999888506776553----03886645324588898899999774303788741
Q 000937 3 SLNDRIGFGLSVISWFCTGL---VTGEVSYNGYKLEEFVPQ----KLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRA 75 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g~---~~G~I~lnG~~~~~~~~r----~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~ 75 (1218)
.|.|+.||||||+.+...|. .+|+|.+||.++.....+ .-.+|++|+..+++.+||+||+.+.+..+...
T Consensus 36 ~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~--- 112 (240)
T d1ji0a_ 36 TLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK--- 112 (240)
T ss_dssp EEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS---
T ss_pred EEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH---
T ss_conf 99999998599999999678888803898424434466088888742355676554577636999999888732788---
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 3564321466741049998823577776765531100089999982-886424430027867767723221034777773
Q 000937 76 DILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKIL-GLDICADTLVGDAIRRGISGGQKRRLTTGREML 154 (1218)
Q Consensus 76 ~l~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~l-gL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli 154 (1218)
++. +...+.++..+ +|.+.+|..+++ ||||||||++|||+++
T Consensus 113 --------~~~------------------------~~~~~~~~~~~~~l~~~~~~~~~~-----LSGG~~Qrv~iAraL~ 155 (240)
T d1ji0a_ 113 --------EGI------------------------KRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALM 155 (240)
T ss_dssp --------SHH------------------------HHHHHHHHHHCHHHHTTTTSBSSS-----SCHHHHHHHHHHHHHT
T ss_pred --------HHH------------------------HHHHHHHHHHHHCHHHHHHCCHHH-----CCHHHHHHHHHHHHHH
T ss_conf --------899------------------------999999998741768887585433-----8999999999999998
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 0996288752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
.+| ++|+|||||+|||+.+...+++.++++++ .|+||+++.| ...++...+|++++|.+|++++.|+++++..
T Consensus 156 ~~P-~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~~tH-~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 156 SRP-KLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQ-NALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp TCC-SEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEES-CHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HCC-CEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 299-87400398867999999999999999996-8998999958-8999999699999998999999848999842
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-37 Score=243.64 Aligned_cols=187 Identities=22% Similarity=0.214 Sum_probs=152.2
Q ss_pred CCCCCCCCCCCHHHCCCCE---EEEEEEEECCCCCCCCC----------------CCCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 9889989882021002130---39989998885067765----------------5303886645324588898899999
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFV----------------PQKLSAYVSQYDLHIPEMTVRETLD 63 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g---~~~G~I~lnG~~~~~~~----------------~r~~~~YV~Q~d~l~~~lTVrEtL~ 63 (1218)
.+.|+.||||||+.+...| ..+|+|.+||.+++... .++-.+||.|++.+++.+||.|++.
T Consensus 32 ~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~ 111 (258)
T d1b0ua_ 32 SIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM 111 (258)
T ss_dssp EEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHH
T ss_conf 99989998299999999747667899779999993367752000023517679997454489983323141101021365
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCEECCCCCCCCCCC
Q ss_conf 774303788741356432146674104999882357777676553110008999998288642-4430027867767723
Q 000937 64 FSTYCQGVGSRADILLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDIC-ADTLVGDAIRRGISGG 142 (1218)
Q Consensus 64 faa~lk~~~~~~~l~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~-~dT~VG~~~~rGLSGG 142 (1218)
|+..... ..++++.. ..+..+++.+||.+- .+..++ .||||
T Consensus 112 ~~~~~~~---------~~~~~~~~------------------------~~~~~~l~~~~l~~~~~~~~p~-----~LSGG 153 (258)
T d1b0ua_ 112 EAPIQVL---------GLSKHDAR------------------------ERALKYLAKVGIDERAQGKYPV-----HLSGG 153 (258)
T ss_dssp HHHHHTT---------CCCHHHHH------------------------HHHHHHHHHTTCCHHHHTSCGG-----GSCHH
T ss_pred HHHHHHC---------CCCHHHHH------------------------HHHHHHHHHCCCCHHHHCCCCC-----CCCHH
T ss_conf 6578762---------99989999------------------------9999999982995244306822-----05677
Q ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEE
Q ss_conf 22103477777309962887527998847366999999999997724997999961699357820140889819818876
Q 000937 143 QKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYH 222 (1218)
Q Consensus 143 qKkRlSIA~eli~~p~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~ 222 (1218)
||||++|||+++.+| ++|++||||+|||+.+...+++.++++++ .|+||++..| -..++..++|+|++|.+|++++.
T Consensus 154 ~~QRv~iAraL~~~P-~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vtH-dl~~~~~~adri~vm~~G~iv~~ 230 (258)
T d1b0ua_ 154 QQQRVSIARALAMEP-DVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTH-EMGFARHVSSHVIFLHQGKIEEE 230 (258)
T ss_dssp HHHHHHHHHHHHTCC-SEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECS-CHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHCCC-CEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCCEEEEEC-CHHHHHHHCCEEEEEECCEEEEE
T ss_conf 888989999984399-87885245556887888899876554103-6883389948-99999986999999979999998
Q ss_pred CCHHHHHH
Q ss_conf 48224899
Q 000937 223 GPRESVLE 230 (1218)
Q Consensus 223 G~~~~l~~ 230 (1218)
|+++++..
T Consensus 231 g~~~ev~~ 238 (258)
T d1b0ua_ 231 GDPEQVFG 238 (258)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHH
T ss_conf 49999983
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.2e-37 Score=238.67 Aligned_cols=177 Identities=19% Similarity=0.295 Sum_probs=137.3
Q ss_pred CCCCCCCCCCHHHCCCCE---EEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 889989882021002130---39989998885067765530388664532458889889999977430378874135643
Q 000937 4 LNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILLE 80 (1218)
Q Consensus 4 ~~~~~g~~~~~l~~~~~g---~~~G~I~lnG~~~~~~~~r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l~~~ 80 (1218)
+.|+.|||||||.+...| ..+|.|.+||. .+||+|++.+++. ||+||+.|+....
T Consensus 67 ivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~----------i~~v~Q~~~l~~~-tv~eni~~~~~~~----------- 124 (281)
T d1r0wa_ 67 ITGSTGSGKTSLLMLILGELEASEGIIKHSGR----------VSFCSQFSWIMPG-TIKENIIFGVSYD----------- 124 (281)
T ss_dssp EEESTTSSHHHHHHHHHTSSCCSEEEEECCSC----------EEEECSSCCCCSE-EHHHHHTTTSCCC-----------
T ss_pred EECCCCCHHHHHHHHHHCCCCCCCCEEEECCE----------EEEEECCCCCCCC-EEECCCCCCCCCC-----------
T ss_conf 99899982999999995797478828999999----------9998164302676-0321420333456-----------
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 21466741049998823577776765531100089999982886424430027867767723221034777773099628
Q 000937 81 LSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIKA 160 (1218)
Q Consensus 81 ~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p~~I 160 (1218)
.. +.+...+.+..+ .....+.+..+|.+|+.. ..||||||||++|||+++.+| +|
T Consensus 125 --~~----------~~~~~~~~~~~~-----------~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p-~i 179 (281)
T d1r0wa_ 125 --EY----------RYKSVVKACQLQ-----------QDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDA-DL 179 (281)
T ss_dssp --HH----------HHHHHHHHTTCH-----------HHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCC-SE
T ss_pred --CH----------HHHHHHHHHHHH-----------HHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCC-CC
T ss_conf --05----------799999997769-----------999846123323555542-377999999999999998696-35
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHHH
Q ss_conf 8752799884736699999999999772499799996169935782014088981981887648224899
Q 000937 161 MFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVLE 230 (1218)
Q Consensus 161 LlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~~ 230 (1218)
|+||||||+||+.++..+++.+..... .++|+|+..|+ .+....+|+|++|.+|+++++|++++++.
T Consensus 180 llLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~--~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 180 YLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSK--MEHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp EEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSC--HHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECH--HHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 133385544898999999999998862-89999999252--89998599999998999999878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-33 Score=216.02 Aligned_cols=180 Identities=23% Similarity=0.244 Sum_probs=148.4
Q ss_pred CCCCCCCCCCCHHHCCCCE--EEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf 9889989882021002130--399899988850677655---30388664532458889889999977430378874135
Q 000937 3 SLNDRIGFGLSVISWFCTG--LVTGEVSYNGYKLEEFVP---QKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADI 77 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g--~~~G~I~lnG~~~~~~~~---r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l 77 (1218)
.+.|+.||||||+.+...| ..+|+|.++|.++..... +..++|++|+.......|+.+.+.+...-+
T Consensus 29 ~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------- 100 (231)
T d1l7vc_ 29 HLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK-------- 100 (231)
T ss_dssp ECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT--------
T ss_pred EEECCCCCCHHHHHHHHHCCCCCCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCHH--------
T ss_conf 999899980999999994887995599999999986998999864024512135774420988764100146--------
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHH--
Q ss_conf 643214667410499988235777767655311000899999828864244300278677677232210347777730--
Q 000937 78 LLELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLV-- 155 (1218)
Q Consensus 78 ~~~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~-- 155 (1218)
.+ ...++.++..++|.+..+..++ .||||||||++||++++.
T Consensus 101 ----~~---------------------------~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 101 ----TR---------------------------TELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp ----TC---------------------------HHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHC
T ss_pred ----HH---------------------------HHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHHC
T ss_conf ----68---------------------------9999999986598767676844-----56998899999999998517
Q ss_pred -----CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEECCHHHHH
Q ss_conf -----99628875279988473669999999999977249979999616993578201408898198188764822489
Q 000937 156 -----GPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEGKILYHGPRESVL 229 (1218)
Q Consensus 156 -----~p~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G~ivy~G~~~~l~ 229 (1218)
+| +|++|||||+|||+.+...+.+.++++++ .|+||+++.|. ..++...+|++++|.+|+++++|++++++
T Consensus 145 p~~~p~p-~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHd-l~~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 145 PQANPAG-QLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp TTTCTTC-CEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCC-HHHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred CCCCCCC-CEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 1338998-89997187777898999999999999986-79999999677-99999979999999799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=4.4e-29 Score=191.16 Aligned_cols=164 Identities=15% Similarity=0.197 Sum_probs=129.2
Q ss_pred CCCCCCCCCCCHHHCCCCE---EEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 9889989882021002130---3998999888506776553038866453245888988999997743037887413564
Q 000937 3 SLNDRIGFGLSVISWFCTG---LVTGEVSYNGYKLEEFVPQKLSAYVSQYDLHIPEMTVRETLDFSTYCQGVGSRADILL 79 (1218)
Q Consensus 3 ~~~~~~g~~~~~l~~~~~g---~~~G~I~lnG~~~~~~~~r~~~~YV~Q~d~l~~~lTVrEtL~faa~lk~~~~~~~l~~ 79 (1218)
.+.|+.|||||||.+...| ..+|+|.+||.++.+. +.-.+|++|+..+.+.+|++|++.+.+.+.+....
T Consensus 31 ~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~----- 103 (200)
T d1sgwa_ 31 NFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN----- 103 (200)
T ss_dssp EEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC-----
T ss_pred EEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC-----
T ss_conf 99999997199999999662056778899998962673--67089995013578882899999999975488637-----
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf 32146674104999882357777676553110008999998288642443002786776772322103477777309962
Q 000937 80 ELSGREEEARIIPDPDIDTYMKATSVHRLKKNLQTDYNLKILGLDICADTLVGDAIRRGISGGQKRRLTTGREMLVGPIK 159 (1218)
Q Consensus 80 ~~s~~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~il~~lgL~~~~dT~VG~~~~rGLSGGqKkRlSIA~eli~~p~~ 159 (1218)
+ ..+.+.++.+++.+.. ..++ .||||||||++|||+++.+| +
T Consensus 104 ---~----------------------------~~~~~~l~~~~~~~~~-~~~~-----~LSgG~~qrv~ia~al~~~~-~ 145 (200)
T d1sgwa_ 104 ---K----------------------------NEIMDALESVEVLDLK-KKLG-----ELSQGTIRRVQLASTLLVNA-E 145 (200)
T ss_dssp ---H----------------------------HHHHHHHHHTTCCCTT-SBGG-----GSCHHHHHHHHHHHHTTSCC-S
T ss_pred ---H----------------------------HHHHHHHHHCCCCCCC-CCCC-----CCCCCHHHHHHHHHHHHCCC-C
T ss_conf ---9----------------------------9999999874885630-1268-----68971888899999886499-8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECC
Q ss_conf 887527998847366999999999997724997999961699357820140889819
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAE 216 (1218)
Q Consensus 160 ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~ 216 (1218)
+++|||||+|||..++..+++.++++.+..+ +++++.||. ...+|.+.+|.+
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~~~~~-~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKG-IVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHS-EEEEEESSC----CTTSSEEEEGGG
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECH----HHHCCHHHHEEE
T ss_conf 9998686201699999999999999986799-999999162----544161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.48 E-value=5.2e-15 Score=105.36 Aligned_cols=159 Identities=14% Similarity=0.035 Sum_probs=96.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCCCCCCC--EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9999959998199999989699989833459999797085001222--38895069988999989999999986103999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVR--VSGYCEQTDIHSPHITIEESLFFSAWLRLAPQ 735 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~--~~~yv~q~~~~~~~lTv~e~l~~~~~l~~~~~ 735 (1218)
-++|.||||||||||+++|+|...+. .|.+...+.+......+. ...+...........+..+. .+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--- 70 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKR--AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSK------KLV--- 70 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG--EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCS------SEE---
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC--CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH---
T ss_conf 89999899938999999998148888--6469987713288887653112336677788754113455------443---
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99455999999999982987643333358887788989999999999995099677983999999999999999999999
Q 000937 736 INSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV 815 (1218)
Q Consensus 736 ~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 815 (1218)
.. .+. +. ....+++|+++|.++++++..+|+++++|||... ......+...+.++
T Consensus 71 -~~-------------~~~----~~-----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~ 125 (178)
T d1ye8a1 71 -GS-------------YGV----NV-----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQI 125 (178)
T ss_dssp -TT-------------EEE----CH-----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHH
T ss_pred -HH-------------HHC----CC-----CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CHHHHHHHHHHHHH
T ss_conf -02-------------303----76-----2566532013789999997409974230277731--00457999999987
Q ss_pred H-HCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 8-659889999548998899851548899139799998479
Q 000937 816 A-DTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPL 855 (1218)
Q Consensus 816 ~-~~g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~ 855 (1218)
. +.+.++++++|+.. ....+|++..+. +|+++.-++.
T Consensus 126 l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 126 MHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp HTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTT
T ss_pred HCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCEEEEECCC
T ss_conf 5057978999974477--898636599871-9999998996
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.26 E-value=2.1e-10 Score=77.22 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=63.1
Q ss_pred CCCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEE
Q ss_conf 778898999999999999----5099677983999999999999999999999865988999954899889985154889
Q 000937 767 VSGLSTEQRKRLTIGVEL----VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELIL 842 (1218)
Q Consensus 767 ~~~lSgGerkrv~ia~~L----~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~ 842 (1218)
...+|+|||+...++..+ ..+|++++.|||-++|++.....+.+.|+..++ +.-+|+|||.|. +.+.+|++..
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCCEEE
T ss_conf 1102577766777776655654226744554320335797899999999998554-887999989889--9973242899
Q ss_pred EE-CCC
Q ss_conf 91-397
Q 000937 843 LK-TGG 847 (1218)
Q Consensus 843 l~-~~G 847 (1218)
+. .+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEECC
T ss_conf 999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=3.5e-10 Score=75.94 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEE
Q ss_conf 78898999999999999----50996779839999999999999999999998659889999548998899851548899
Q 000937 768 SGLSTEQRKRLTIGVEL----VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 768 ~~lSgGerkrv~ia~~L----~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 843 (1218)
..+|||||.++++|.-+ ..++++++||||+++||+.....+.+.|++++..+.-+|++||+| ++....|.++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--999736617999
Q ss_pred E
Q ss_conf 1
Q 000937 844 K 844 (1218)
Q Consensus 844 ~ 844 (1218)
.
T Consensus 409 ~ 409 (427)
T d1w1wa_ 409 Y 409 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=3.4e-09 Score=69.94 Aligned_cols=27 Identities=22% Similarity=0.553 Sum_probs=22.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999687499999599981999999896
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLA 677 (1218)
Q Consensus 651 ~~i~~G~~~ai~GpsGaGKTTLl~~l~ 677 (1218)
..+.++.+++|+|||||||||+|++|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EECCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 758999989999999998899999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.74 E-value=1.5e-10 Score=78.15 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=62.9
Q ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCC
Q ss_conf 67723221034777773099628875279988473669999999999977249979999616993578201408898198
Q 000937 138 GISGGQKRRLTTGREMLVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIILMAEG 217 (1218)
Q Consensus 138 GLSGGqKkRlSIA~eli~~p~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~vL~~G 217 (1218)
.+++|+++|.++++++..+| +++++|||+...+ .....+..+.++-+..+.|++.+.|+. +.....|++..+.+|
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~-~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~ 155 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRR-KVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGA 155 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCH--HHHHHHCEEEEEECC
T ss_conf 65320137899999974099-7423027773100--457999999987505797899997447--789863659987199
Q ss_pred CEEEECC
Q ss_conf 1887648
Q 000937 218 KILYHGP 224 (1218)
Q Consensus 218 ~ivy~G~ 224 (1218)
++++-++
T Consensus 156 ~i~~v~~ 162 (178)
T d1ye8a1 156 VLIELTP 162 (178)
T ss_dssp EEEECCT
T ss_pred EEEEECC
T ss_conf 9999899
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.09 E-value=0.00017 Score=41.21 Aligned_cols=60 Identities=8% Similarity=0.164 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 999999999950996779839999999999999999-99999865988999954899889985
Q 000937 775 RKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR-AVKNVADTGRTIVCTIHQPSIDIFES 836 (1218)
Q Consensus 775 rkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~~~~~ 836 (1218)
-++++-....+.+.+++++||..+|=|+.....+.. .++.+.+.+..+++++|.. ++..+
T Consensus 102 l~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 102 MEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHHH
T ss_conf 78898775028977278554545686233200258888888862376137865202--33322
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.06 E-value=1.1e-05 Score=48.59 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=36.5
Q ss_pred CCCCCCCHHHHHHHH---HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEE
Q ss_conf 772322103477777---309962887527998847366999999999997724997999961699357820140889
Q 000937 139 ISGGQKRRLTTGREM---LVGPIKAMFMDKITNGLDISTSFQIVTCLQHLAHITDATILISLLQPSPETFHLFDDIIL 213 (1218)
Q Consensus 139 LSGGqKkRlSIA~el---i~~p~~ILlLDEpTSgLDs~sa~~i~~~L~~la~~~g~TIiisihQps~~~~~lfD~I~v 213 (1218)
+|+|||+...++..+ ...+++++++|||-++|++.....+.+.|+..++ +.-+|+|. |+++++..+|+++.
T Consensus 220 ~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitT--Hsp~~~~~~d~~~~ 293 (308)
T d1e69a_ 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVIT--HNKIVMEAADLLHG 293 (308)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEEC--CCTTGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEE--CCHHHHHHCCCEEE
T ss_conf 2577766777776655654226744554320335797899999999998554--88799998--98899973242899
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=5.3e-05 Score=44.32 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCC
Q ss_conf 99999999999950996779839999999999999999-99999865-988999954899
Q 000937 773 EQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMR-AVKNVADT-GRTIVCTIHQPS 830 (1218)
Q Consensus 773 Gerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~-g~tii~~~H~~~ 830 (1218)
.|-+|++-......+.+++++||+.+|=++.....+.. .++.+..+ +..+++++|...
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999999974546608853222358774566678987645432045442898524687
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.64 E-value=3.3e-05 Score=45.56 Aligned_cols=34 Identities=29% Similarity=0.260 Sum_probs=27.1
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3210389996874999995999819999998969
Q 000937 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 645 iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
-|+++.+=+.+|+++.|.|++|+||||++.-++-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 6888746978980899994799979999999997
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.00095 Score=36.69 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=73.2
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 10321038999687499999599981999999896999898334599997970850012223889506998899998999
Q 000937 643 LQLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEE 722 (1218)
Q Consensus 643 ~~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~lTv~e 722 (1218)
..++.+ +.||+++.|.|++|+|||||+--|+..... |.-.+ +.... ....+.|+..++.. -.+.+
T Consensus 20 d~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia~----g~~~~-~~~~~---~~~~vl~~~~E~~~---~~~~~ 84 (274)
T d1nlfa_ 20 DYVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIAG----GPDLL-EVGEL---PTGPVIYLPAEDPP---TAIHH 84 (274)
T ss_dssp CEEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHHT----CCCTT-CCCCC---CCCCEEEEESSSCH---HHHHH
T ss_pred HHHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHHC----CCCCC-CCCCC---CCCCEEEEECCCHH---HHHHH
T ss_conf 898689----558958999928999899999999999976----99721-11235---78736898512349---99999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC----
Q ss_conf 9999986103999994559999999999829876433333588877889899999999999950996779839999----
Q 000937 723 SLFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTT---- 798 (1218)
Q Consensus 723 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrv~ia~~L~~~p~illlDEPts---- 798 (1218)
- +.+.. ....... .......+.+....+... ....- ..+.-......+|+++++|--+.
T Consensus 85 R--l~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~ 147 (274)
T d1nlfa_ 85 R--LHALG---AHLSAEE----RQAVADGLLIQPLIGSLP-----NIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIE 147 (274)
T ss_dssp H--HHHHH---TTSCHHH----HHHHHHHEEECCCTTSCC-----CTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCS
T ss_pred H--HHHHH---HCCCHHH----HHCCCCCCEECCCCCCCC-----HHHHH---HHHHHHHHHCCCCCEEECCCHHHHCCC
T ss_conf 9--99986---2368666----531233323214567420-----35789---999998875267658962813542266
Q ss_pred -CCCHHHHHHHHHHHHHHHHC-CCEEEEEECCC
Q ss_conf -99999999999999999865-98899995489
Q 000937 799 -GLDARAAAIVMRAVKNVADT-GRTIVCTIHQP 829 (1218)
Q Consensus 799 -gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~ 829 (1218)
--|......++..|+.+++. +.+++++.|..
T Consensus 148 ~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 148 EENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 523225689999887777644797540131005
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.43 E-value=5.4e-05 Score=44.26 Aligned_cols=34 Identities=26% Similarity=0.511 Sum_probs=26.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 874999995999819999998969998983345999
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIK 690 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~ 690 (1218)
.|..++++|+||+|||||+|.|.+..... .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~--T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR--VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH--CCCCC
T ss_conf 69808997889877888877305355501--06842
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.26 E-value=8.7e-05 Score=43.01 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 74999995999819999998969998
Q 000937 656 GVLTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 656 G~~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
|.++.|+||||||||||.+.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.13 E-value=0.00018 Score=41.08 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=27.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 874999995999819999998969998983345999979
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
.|+++.|.||+||||||+.+.|+.+... --+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~----~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV----PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS----CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC----CEEEECH
T ss_conf 9859999889999889999999999599----9799068
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00019 Score=40.91 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=23.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 874999995999819999998969998
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
.|.++.|+||||+|||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00019 Score=40.96 Aligned_cols=22 Identities=50% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+++|.|++|||||||++.|...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.03 E-value=6.8e-05 Score=43.67 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=25.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 874999995999819999998969998983345999
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIK 690 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~ 690 (1218)
.|..++++|+||+|||||+|.|.+.... ..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~--~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL--RTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHH--HHCCCC
T ss_conf 3564999877873487898751517676--403555
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.0003 Score=39.71 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=23.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 687499999599981999999896999
Q 000937 654 RPGVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 654 ~~G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+.+.++.|+||+||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=1.4e-05 Score=47.78 Aligned_cols=33 Identities=30% Similarity=0.241 Sum_probs=27.8
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3210389996874999995999819999998969
Q 000937 645 LLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 645 iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
-.++.++.+.+| ++.|+|||||||||+|++|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.74 E-value=0.0005 Score=38.40 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 687499999599981999999896999
Q 000937 654 RPGVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 654 ~~G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+.|.++.|.|++||||||+-+.|+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.65 E-value=0.00065 Score=37.68 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 687499999599981999999896999
Q 000937 654 RPGVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 654 ~~G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
++|-.+.|.||+||||||+.+.|+-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.63 E-value=0.00066 Score=37.65 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999599981999999896999
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
..++|.||+|+|||||.+.|+...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.63 E-value=0.00055 Score=38.15 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999819999998969998
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
.++|+|++|+|||||+|.|.|...
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~~ 48 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRKN 48 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999989999879999998529874
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.61 E-value=0.00067 Score=37.60 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=24.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEEEECC
Q ss_conf 49999959998199999989699-98983345999979
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGR-KTSGCFKGEIKVNG 693 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~-~~~~~~~G~i~~~g 693 (1218)
.+++|+|++|||||||++-|... ...|..-|-|.-++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.51 E-value=0.00086 Score=36.96 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999819999998969
Q 000937 658 LTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g 678 (1218)
++++.||.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.50 E-value=0.00083 Score=37.04 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999959998199999989699
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-++||-||+|||||||.+.|+..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89997898878999999999998
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.45 E-value=0.016 Score=29.13 Aligned_cols=163 Identities=16% Similarity=0.063 Sum_probs=73.5
Q ss_pred EECE-EEEEECCEEEEEECCCCCCHHHHHHHHHC-CCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 2103-89996874999995999819999998969-998983345999979708500122238895069988999989999
Q 000937 646 LDDV-TGTLRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEES 723 (1218)
Q Consensus 646 L~~v-s~~i~~G~~~ai~GpsGaGKTTLl~~l~g-~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~lTv~e~ 723 (1218)
|+++ .|-+++|+++.|.|++|+|||+|..-++. ....+ ...+. |+.. ..+..+.
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~--~~~~~----------------~~s~------e~~~~~~ 70 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGV----------------FVTF------EETPQDI 70 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEE----------------EEES------SSCHHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC--CCCCC----------------CCCC------CCCHHHH
T ss_conf 9885568996983999994799999999999999999856--88742----------------0126------6799999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHH--HCCCEEEEECCCCCC
Q ss_conf 9999861039999945599999999998298764333335888778898999-9999999995--099677983999999
Q 000937 724 LFFSAWLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQR-KRLTIGVELV--ANPSIIFMDEPTTGL 800 (1218)
Q Consensus 724 l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGer-krv~ia~~L~--~~p~illlDEPtsgL 800 (1218)
......... .. +...+.............. .......... ..+.-....+ .+|++++.|--+.-.
T Consensus 71 ~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~ 138 (242)
T d1tf7a1 71 IKNARSFGW----DL-------AKLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVF 138 (242)
T ss_dssp HHHHGGGTC----CH-------HHHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTS
T ss_pred HHHHHHCCC----CH-------HHHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999998499----84-------8988714302444210335-44443024589999999999886312220020788998
Q ss_pred ----CHHHHH-HHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHHCEEEEEE
Q ss_conf ----999999-9999999998659889999548998--------8998515488991
Q 000937 801 ----DARAAA-IVMRAVKNVADTGRTIVCTIHQPSI--------DIFESFDELILLK 844 (1218)
Q Consensus 801 ----D~~~~~-~i~~~l~~l~~~g~tii~~~H~~~~--------~~~~~~d~~~~l~ 844 (1218)
+..... .+...++.+++.+.+++++.|.... .....+|.++.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 139 QQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 760572678999999999998639716884210255422246762335362999988
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.41 E-value=0.0012 Score=36.08 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 74999995999819999998969998
Q 000937 656 GVLTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 656 G~~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
..++.|.||+||||||+.+.|+....
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.40 E-value=0.00099 Score=36.57 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999819999998969998
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
-+.|+|||||||+||++.|....+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.37 E-value=0.001 Score=36.45 Aligned_cols=22 Identities=45% Similarity=0.528 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
.+.|+||+||||||+.+.|+-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 7989899999989999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.36 E-value=0.0013 Score=35.82 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999995999819999998969
Q 000937 657 VLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
+++.|.||+||||||+.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.35 E-value=0.0013 Score=35.80 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999599981999999896999
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.0013 Score=35.85 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999995999819999998969998
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
..+.|+||||+||+||++-|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.32 E-value=0.0017 Score=35.14 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99968749999959998199999989699
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 651 ~~i~~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
|-+++|+++.|.||+|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 89859979999958999999999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.30 E-value=0.0014 Score=35.57 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 749999959998199999989699
Q 000937 656 GVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 656 G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
..++.|+||+||||||+.+.|+..
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 948999899999889999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.28 E-value=0.0013 Score=35.91 Aligned_cols=21 Identities=52% Similarity=0.642 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+.|+||||||||||.+.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.25 E-value=0.0013 Score=35.81 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0012 Score=36.18 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999599981999999896999
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
..+.|.||+|+|||||++.++...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998899971999999999999
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0015 Score=35.52 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++||-||+||||||+-+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.21 E-value=0.0017 Score=35.15 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999959998199999989699
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.001 Score=36.48 Aligned_cols=25 Identities=44% Similarity=0.492 Sum_probs=22.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8749999959998199999989699
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
.|-++.|.|++||||||+-+.|+-+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.19 E-value=0.00077 Score=37.26 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599981999999896999
Q 000937 659 TALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+||+|++++|||||+|.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.12 E-value=0.002 Score=34.66 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7499999599981999999896999
Q 000937 656 GVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 656 G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-.++.|+||+||||||+.+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.10 E-value=0.0013 Score=35.77 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999819999998969998
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
.++|+|++|+|||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.10 E-value=0.0021 Score=34.57 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999819999998969998
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
-+||+|.+|+|||||+|.|.|...
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799989999978999999958886
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.08 E-value=0.0022 Score=34.45 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999819999998969998
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
.++++|++|+|||||++.|.|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0024 Score=34.25 Aligned_cols=23 Identities=43% Similarity=0.726 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.++++|.+++|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999799998999999995898
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.0022 Score=34.48 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-++++|++|+|||||++.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0023 Score=34.38 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 874999995999819999998969
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
..-.++|.||+|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 832897438999989999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.98 E-value=0.0028 Score=33.78 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.++++|.+|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.96 E-value=0.0025 Score=34.13 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.++|.||+||||||.-+.|+-..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.0024 Score=34.27 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.+.|.||+||||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.94 E-value=0.0025 Score=34.10 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.93 E-value=0.0022 Score=34.51 Aligned_cols=22 Identities=18% Similarity=0.364 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
.+.|+||+||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.85 E-value=0.0017 Score=35.18 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599981999999896999
Q 000937 659 TALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+||+|.+++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.85 E-value=0.0032 Score=33.47 Aligned_cols=26 Identities=42% Similarity=0.509 Sum_probs=21.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 68749999959998199999989699
Q 000937 654 RPGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 654 ~~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++|--+.|+||+||||||.-+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.85 E-value=0.0026 Score=34.03 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 687499999599981999999896999
Q 000937 654 RPGVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 654 ~~G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+.+.++.|+||+||||||+.+.|+...
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0032 Score=33.47 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++.|+||+||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.77 E-value=0.0023 Score=34.31 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=25.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 74999995999819999998969998983345999979
Q 000937 656 GVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNG 693 (1218)
Q Consensus 656 G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g 693 (1218)
...+.+.||+|+|||||.+.|++.... +-+.+|+
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~----~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG----NVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT----CCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC----CEEEEEC
T ss_conf 979998897998899999999998651----5489832
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.74 E-value=0.0013 Score=35.88 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=64.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89996874999995999819999998969998983345999979708500122238895069988999989999999986
Q 000937 650 TGTLRPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSAW 729 (1218)
Q Consensus 650 s~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~~ 729 (1218)
...++.+.-+.|.||.||||||+|++|.+..++. .--+.+.+.. + . .++.
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~--~rivtiEd~~---E-l------------~l~~------------ 209 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTE---E-I------------VFKH------------ 209 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSC---C-C------------CCSS------------
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCC--CCEEECCCHH---H-H------------HCCC------------
T ss_conf 9999837888999403566257899986530145--6233113226---5-5------------1111------------
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 10399999455999999999982987643333358887788989999999999995099677983999999999999999
Q 000937 730 LRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVM 809 (1218)
Q Consensus 730 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~ 809 (1218)
.. .. ..+. .+ .+++-.+ .+-.+|=.+|+.++++|--.. .+ ..
T Consensus 210 ---~~--~~-------------~~~~------~~----~~~~~~~----ll~~~lR~~pd~iivgEiR~~---ea-~~-- 251 (323)
T d1g6oa_ 210 ---HK--NY-------------TQLF------FG----GNITSAD----CLKSCLRMRPDRIILGELRSS---EA-YD-- 251 (323)
T ss_dssp ---CS--SE-------------EEEE------CB----TTBCHHH----HHHHHTTSCCSEEEESCCCST---HH-HH--
T ss_pred ---CC--CC-------------CEEC------CC----CCHHHHH----HHHHHHCCCCCCCCCCCCCCH---HH-HH--
T ss_conf ---24--54-------------1001------46----5424999----999974349985457866746---59-99--
Q ss_pred HHHHHHHHCC-CEEEEEECCCCHHHHHHHCEEEEE
Q ss_conf 9999998659-889999548998899851548899
Q 000937 810 RAVKNVADTG-RTIVCTIHQPSIDIFESFDELILL 843 (1218)
Q Consensus 810 ~~l~~l~~~g-~tii~~~H~~~~~~~~~~d~~~~l 843 (1218)
.++.+ ..| ..++.|+|-.+. ...++++.-|
T Consensus 252 -~l~a~-~tGh~g~~tT~Ha~s~--~~a~~Rl~~l 282 (323)
T d1g6oa_ 252 -FYNVL-CSGHKGTLTTLHAGSS--EEAFIRLANM 282 (323)
T ss_dssp -HHHHH-HTTCSCEEEEECCSSH--HHHHHHHHHH
T ss_pred -HHHHH-HHCCCCEEEEECCCCH--HHHHHHHHHH
T ss_conf -99999-8169857998787999--9999999985
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.74 E-value=0.0032 Score=33.46 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599981999999896999
Q 000937 659 TALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+.|+|++||||||+-+.|+...
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.73 E-value=0.0036 Score=33.15 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8749999959998199999989699
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
..-.++|.||.|||||||++.|...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8159861179988899999999998
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0046 Score=32.54 Aligned_cols=25 Identities=44% Similarity=0.775 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7499999599981999999896999
Q 000937 656 GVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 656 G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
|=-++++|++++|||||++.|.|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.70 E-value=0.0023 Score=34.33 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-++|+|++|+|||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996788
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.61 E-value=0.004 Score=32.91 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999959998199999989699
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
=++||-|++||||||+-+.|...
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHH
T ss_conf 89999689999876899999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.58 E-value=0.0039 Score=32.95 Aligned_cols=21 Identities=38% Similarity=0.590 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+.|+||+||||||+.+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889999989999999998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.58 E-value=0.004 Score=32.87 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
.+.++|++||||||+-+.|+-+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 8899889999889999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.57 E-value=0.0042 Score=32.72 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 87499999599981999999896
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLA 677 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~ 677 (1218)
.-+++.++|++||||||+.+-++
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 99899998999998999999999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.56 E-value=0.005 Score=32.28 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=24.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9996874999995999819999998969
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 651 ~~i~~G~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
|=+++|+++.|.||+|+|||||..-++.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9986996999983899988999999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.005 Score=32.28 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.47 E-value=0.0042 Score=32.76 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8749999959998199999989699
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
|+.-+.+.||+|+|||.|.+.|+..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9866999899998888999998621
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.46 E-value=0.0056 Score=31.98 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=28.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCE
Q ss_conf 68749999959998199999989699989833459999797
Q 000937 654 RPGVLTALMGVSGAGKTTLLDVLAGRKTSGCFKGEIKVNGY 694 (1218)
Q Consensus 654 ~~G~~~ai~GpsGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 694 (1218)
+.|.++-+.|.|||||||+-+.|.-+.......-.+.++|.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD 62 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 62 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 99869999899999989999999988777427508997536
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.43 E-value=0.0054 Score=32.09 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999959998199999989699
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
.++.++|.+||||||+.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.0024 Score=34.23 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999995999819999998969998
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
--++|+|++++|||||+|.|.+...
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7899988999989999999858985
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.40 E-value=0.0076 Score=31.18 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=23.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999687499999599981999999896
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLA 677 (1218)
Q Consensus 651 ~~i~~G~~~ai~GpsGaGKTTLl~~l~ 677 (1218)
|=+++|+++.|.||+|+|||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 995588799998589898899999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.38 E-value=0.005 Score=32.27 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599981999999896999
Q 000937 659 TALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+||+|+..||||||++.|.+..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.38 E-value=0.0058 Score=31.90 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999599981999999896999
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.++.|.|++||||||+.+.|+.+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998989989899999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.37 E-value=0.0051 Score=32.25 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599981999999896999
Q 000937 659 TALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+.++|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.35 E-value=0.0052 Score=32.18 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999995999819999998969
Q 000937 657 VLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
-++||.|++||||||+.+.|.-
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989887789999999998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.35 E-value=0.004 Score=32.87 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.31 E-value=0.0055 Score=32.04 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
.+.|+||+||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999879999999998
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.29 E-value=0.0043 Score=32.68 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599981999999896999
Q 000937 659 TALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+.++|++|+|||||++.+.+..
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996598
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.29 E-value=0.0043 Score=32.71 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999599981999999896999
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-+++|-|+.||||||+++.|+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.26 E-value=0.0057 Score=31.95 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.26 E-value=0.0045 Score=32.58 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.23 E-value=0.0061 Score=31.76 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-+.|+||+||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.22 E-value=0.0091 Score=30.70 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=25.5
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 89996874999995999819999998969
Q 000937 650 TGTLRPGVLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 650 s~~i~~G~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
.|-+++|+++.|.|++|+||||+..-++.
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 79862885999991799998999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.22 E-value=0.0072 Score=31.32 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999599981999999896999
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
..+.+.||+|+||||+.++++...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 449998799998889999999998
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.19 E-value=0.0069 Score=31.45 Aligned_cols=25 Identities=16% Similarity=0.426 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8749999959998199999989699
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
.+..+.|.||+|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.17 E-value=0.0054 Score=32.08 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999819999998969998
Q 000937 659 TALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
++++|.+|+|||||++.+.+...
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899999999967987
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.006 Score=31.79 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
.+.++||+||||||..+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.14 E-value=0.0026 Score=33.99 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++||-|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.13 E-value=0.0097 Score=30.55 Aligned_cols=152 Identities=18% Similarity=0.103 Sum_probs=74.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 899968749999959998199999989699-9898334599997970850012223889506998899998999999998
Q 000937 650 TGTLRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGCFKGEIKVNGYPKIQETFVRVSGYCEQTDIHSPHITIEESLFFSA 728 (1218)
Q Consensus 650 s~~i~~G~~~ai~GpsGaGKTTLl~~l~g~-~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~lTv~e~l~~~~ 728 (1218)
.|-+++|+++.|.||+|+|||+|..-++.. ...+ + ...|+.- ..+..+......
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~---~----------------~~~~is~------e~~~~~~~~~~~ 74 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENACANK---E----------------RAILFAY------EESRAQLLRNAY 74 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT---C----------------CEEEEES------SSCHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC---C----------------CCCEEEC------CCCHHHHHHHHH
T ss_conf 68986984999991899999999999999998723---2----------------4411212------679999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCCC---CCCHHH
Q ss_conf 6103999994559999999999829876433333588877889899999999999-950996779839999---999999
Q 000937 729 WLRLAPQINSKTKADCVNHVLKTIELDGIKESLVGIPGVSGLSTEQRKRLTIGVE-LVANPSIIFMDEPTT---GLDARA 804 (1218)
Q Consensus 729 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrv~ia~~-L~~~p~illlDEPts---gLD~~~ 804 (1218)
.+. ... .+ .. ..+.....+... ......+. .-.+... --.+|++++.|--+. +.+...
T Consensus 75 ~~~----~~~---~~----~~-~~~~~~~~~~~~-----~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~ 136 (242)
T d1tf7a2 75 SWG----MDF---EE----ME-RQNLLKIVCAYP-----ESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNA 136 (242)
T ss_dssp TTS----CCH---HH----HH-HTTSEEECCCCG-----GGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHH
T ss_pred HCC----CCH---HH----HH-HCCCEEEEEEEC-----CHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHHH
T ss_conf 829----986---99----85-458617997300-----01017999-99999999840885332204314304899999
Q ss_pred HHHHHHHHHHHH-HCCCEEEEEECCCC---------HHHHHHHCEEEEEE
Q ss_conf 999999999998-65988999954899---------88998515488991
Q 000937 805 AAIVMRAVKNVA-DTGRTIVCTIHQPS---------IDIFESFDELILLK 844 (1218)
Q Consensus 805 ~~~i~~~l~~l~-~~g~tii~~~H~~~---------~~~~~~~d~~~~l~ 844 (1218)
.......+.+++ +.+.+++++.|... ..+....|.++.+.
T Consensus 137 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 137 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 99999999999998698399998567512554457764046421699999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.12 E-value=0.0069 Score=31.42 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-+.|+||+||||||+-+.|+-..
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.06 E-value=0.022 Score=28.32 Aligned_cols=35 Identities=29% Similarity=0.244 Sum_probs=27.2
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 032103899968749999959998199999989699
Q 000937 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 644 ~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
..+|.....+ .|.-+.+.|+||+|||||...|..+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 3178999999-9999999818999989999999985
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.0083 Score=30.94 Aligned_cols=26 Identities=42% Similarity=0.497 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 68749999959998199999989699
Q 000937 654 RPGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 654 ~~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+.|-+++|-|+.||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.95 E-value=0.0083 Score=30.95 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+.++||.||||||+.+.|+-.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999989999999999
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.94 E-value=0.0083 Score=30.93 Aligned_cols=22 Identities=36% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
.+.+.||+|+||||+.++++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999789997487999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.94 E-value=0.0095 Score=30.60 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8749999959998199999989699
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
.+.+++++||+|+||||.+-=|+.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=0.0098 Score=30.50 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=24.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9996874999995999819999998969
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 651 ~~i~~G~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
|-+++|+++.|.||+|+|||++..-++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976897999988998878899999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.88 E-value=0.0096 Score=30.55 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599981999999896
Q 000937 658 LTALMGVSGAGKTTLLDVLA 677 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~ 677 (1218)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.83 E-value=0.0097 Score=30.52 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999819999998969998
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
-++++|.+|+|||||++.|.+...
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999898999999966888
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.80 E-value=0.008 Score=31.03 Aligned_cols=26 Identities=38% Similarity=0.664 Sum_probs=21.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 968749999959998199999989699
Q 000937 653 LRPGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 653 i~~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+++. ++||+|...||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.0069 Score=31.44 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7499999599981999999896999
Q 000937 656 GVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 656 G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+.+++|-|+.||||||+++.|+...
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9889998788877999999999997
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.77 E-value=0.0096 Score=30.55 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.+.+.||+|+||||+.++++...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 48987999973889999998503
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.025 Score=27.98 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999819999998969998
Q 000937 659 TALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
++++|++|+|||||++-+.+...
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~~ 30 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNKF 30 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999198999999961999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.74 E-value=0.012 Score=30.04 Aligned_cols=45 Identities=22% Similarity=0.415 Sum_probs=32.7
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9999995099677983999999999999999999999865988999954899
Q 000937 779 TIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830 (1218)
Q Consensus 779 ~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 830 (1218)
.+..+|=.+|++++..|.. |..++...+ +.+..|+.|+.|.|-.+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS
T ss_pred HHHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC
T ss_conf 9999984138889845768---759999999----99724985899833676
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.012 Score=29.93 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8749999959998199999989699
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
.|.++++-|+.||||||+.+.|+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.66 E-value=0.013 Score=29.80 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8749999959998199999989699
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+..-+.+.||+|+|||++.+.|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8886786689988822899999998
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.66 E-value=0.012 Score=29.95 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999995999819999998969
Q 000937 657 VLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
=++||-|+.|||||||-+.|.-
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8998379987889999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.014 Score=29.54 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599981999999896
Q 000937 658 LTALMGVSGAGKTTLLDVLA 677 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~ 677 (1218)
++||.|+.||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.48 E-value=0.0095 Score=30.58 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-++++|++|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.44 E-value=0.015 Score=29.42 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=20.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 749999959998199999989699
Q 000937 656 GVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 656 G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-.-+.+.||+|+|||++.+.|+..
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 807998896999889999998620
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.43 E-value=0.017 Score=29.01 Aligned_cols=24 Identities=42% Similarity=0.382 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 749999959998199999989699
Q 000937 656 GVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 656 G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
..++.++||+|+||||.+-=|+.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.42 E-value=0.017 Score=29.12 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8749999959998199999989699
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+..+++++||+|+||||.+-=|+.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999889999999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.015 Score=29.37 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87499999599981999999896999
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.|.++++=|+.||||||+.+.|+-..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 76899998998886999999999999
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.019 Score=28.71 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=25.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9996874999995999819999998969
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 651 ~~i~~G~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
|=+++|.++-+.||+|+|||||+--++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.35 E-value=0.014 Score=29.61 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+.+.||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.035 Score=27.11 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-++++|++|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998992989999999719
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.26 E-value=0.015 Score=29.35 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-+.+.||+|.||||+.+++++.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 3898897998788899999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.23 E-value=0.013 Score=29.80 Aligned_cols=23 Identities=48% Similarity=0.638 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.22 E-value=0.0069 Score=31.45 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=28.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEEEECCEE
Q ss_conf 99968749999959998199999989699-9898334599997970
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGCFKGEIKVNGYP 695 (1218)
Q Consensus 651 ~~i~~G~~~ai~GpsGaGKTTLl~~l~g~-~~~~~~~G~i~~~g~~ 695 (1218)
+-++.|.++.+.||+|+|||||+-.++.. ...+ .--+++|...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g--~~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG--GVAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC--CEEEEEECCC
T ss_conf 9866633699964887488999999999875489--8899998976
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.22 E-value=0.015 Score=29.32 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599981999999896999
Q 000937 659 TALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+||+|.+.+|||||+|.|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 7688999998999999997889
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.19 E-value=0.034 Score=27.21 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=25.9
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 032103899968749999959998199999989699
Q 000937 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 644 ~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
..+|.... .-.|.-+.+.|+||+|||||...|..+
T Consensus 3 ~~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 3 RSMHGVLV-DIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 32899999-999999999808999989999999985
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.11 E-value=0.016 Score=29.16 Aligned_cols=25 Identities=36% Similarity=0.351 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8749999959998199999989699
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
...+++++||+|+||||.+-=|+.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999989999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.10 E-value=0.0028 Score=33.85 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599981999999896999
Q 000937 659 TALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
++++|.+++|||||+|.|.|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.08 E-value=0.017 Score=29.07 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599981999999896999
Q 000937 659 TALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
++++|++|+|||||++-+.+..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.05 E-value=0.02 Score=28.63 Aligned_cols=26 Identities=31% Similarity=0.250 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87499999599981999999896999
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+...+.|.||+|.||||+++.++...
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88816888989998999999999997
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.022 Score=28.41 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8749999959998199999989699
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
|...+.++||+|+|||.|.+.|+..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7658999778750069999999863
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.98 E-value=0.024 Score=28.13 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 749999959998199999989699
Q 000937 656 GVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 656 G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-.+++++||+|+||||.+-=|+.+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 979999899999989999999999
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.98 E-value=0.017 Score=29.08 Aligned_cols=35 Identities=37% Similarity=0.676 Sum_probs=26.9
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 03210389996874999995999819999998969998
Q 000937 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 644 ~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
.+|+.++. |=-+++|+||-++|||||||.|.|...
T Consensus 23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99970799---879999889999979999999809987
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.94 E-value=0.019 Score=28.74 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-+.+.||+|+|||+|.+.|+..
T Consensus 44 giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 4887668988835999999987
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.93 E-value=0.014 Score=29.47 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.90 E-value=0.012 Score=29.90 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87499999599981999999896999
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+..-+.+.||+|+|||+|.+.+++..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 88757887899876304778878771
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.86 E-value=0.02 Score=28.59 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999599981999999896999
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.-+.++||+|+|||-|.+.||...
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 647998999988999999999873
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.80 E-value=0.021 Score=28.45 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999599981999999896999
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.-+.+.||+|+|||++.+.++...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 646876699888308999999874
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.77 E-value=0.021 Score=28.50 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+.+.||+|+||||+.++++..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHH
T ss_conf 999889998705469999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.63 E-value=0.026 Score=27.96 Aligned_cols=22 Identities=55% Similarity=0.850 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+++|-|+-||||||+++.|...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999899878999999999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.06 Score=25.69 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-++++|.+|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.016 Score=29.13 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-++++|++|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=0.018 Score=28.84 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.55 E-value=0.026 Score=27.89 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.++++|.-.||||||+|.|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.55 E-value=0.024 Score=28.12 Aligned_cols=20 Identities=15% Similarity=0.418 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999819999998969
Q 000937 659 TALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g 678 (1218)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.50 E-value=0.049 Score=26.26 Aligned_cols=35 Identities=29% Similarity=0.162 Sum_probs=26.0
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 032103899968749999959998199999989699
Q 000937 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 644 ~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+-+|. +...-.|.-+.+.|+||+|||||.-.+..+
T Consensus 4 t~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 4 TSLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 04889-999999999999808999999999999984
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.027 Score=27.82 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999819999998969998
Q 000937 659 TALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
++++|.+|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.46 E-value=0.031 Score=27.42 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=23.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 96874999995999819999998969
Q 000937 653 LRPGVLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 653 i~~G~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
.+||.++++-|+=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79982999966877658899999876
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.46 E-value=0.036 Score=27.10 Aligned_cols=22 Identities=41% Similarity=0.753 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599981999999896999
Q 000937 659 TALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+.++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989929999999997286
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.032 Score=27.35 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|++|+|||||++-+...
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=0.028 Score=27.70 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|.+|+|||||++-+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.35 E-value=0.027 Score=27.81 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.++++|.-.||||||+|.|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.32 E-value=0.027 Score=27.85 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=24.1
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 996874999995999819999998969
Q 000937 652 TLRPGVLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 652 ~i~~G~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
-+..|+-.+|.|++|+|||||+..|+.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 645787556867999887899999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.27 E-value=0.026 Score=27.90 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|+.|+|||||++-+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.22 E-value=0.021 Score=28.51 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-+||+|.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.20 E-value=0.026 Score=27.94 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.14 E-value=0.017 Score=29.09 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999819999998969
Q 000937 658 LTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g 678 (1218)
-++++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999988733
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.029 Score=27.65 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+.++|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.10 E-value=0.033 Score=27.28 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-+|++|.-.+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.024 Score=28.10 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|++|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.08 E-value=0.017 Score=29.02 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=25.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99968749999959998199999989699
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 651 ~~i~~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
|-++.|.++-+-||+|+|||||.-.++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98667547898058765227999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.06 E-value=0.025 Score=28.00 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|.+|+|||||++-+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.05 E-value=0.034 Score=27.22 Aligned_cols=21 Identities=48% Similarity=0.654 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 499999599981999999896
Q 000937 657 VLTALMGVSGAGKTTLLDVLA 677 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~ 677 (1218)
.-++|+|+.|+|||||...|.
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 099999488980999999999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.02 E-value=0.032 Score=27.38 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+.+.||+|+||||+.++++..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889987755899999998
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.97 E-value=0.029 Score=27.63 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=28.6
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 099677983999999999999999999999865988999954899
Q 000937 786 ANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830 (1218)
Q Consensus 786 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 830 (1218)
.+.+++++||.-. |.......+.+.+..- .....+|++++.++
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMS 172 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSC
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCC-CCCCCCEEEECCCC
T ss_conf 8724999424333-4543111221002213-56643000102111
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.026 Score=27.96 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-++++|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=0.037 Score=26.98 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-++++|.+|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.031 Score=27.47 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-++++|.+|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.57 E-value=0.042 Score=26.65 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|.+|+|||||++-+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.52 E-value=0.038 Score=26.93 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 499999599981999999896
Q 000937 657 VLTALMGVSGAGKTTLLDVLA 677 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~ 677 (1218)
.-++|+|+.|||||||...|.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHH
T ss_conf 299999589899899999999
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.46 E-value=0.024 Score=28.08 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++.+.||+|.||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.45 E-value=0.026 Score=27.96 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-+.++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.041 Score=26.73 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-+.++|.+|+|||||++.+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.034 Score=27.19 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++|+|.+|+|||||++-+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.25 E-value=0.045 Score=26.47 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999819999998969
Q 000937 658 LTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g 678 (1218)
-+.++|.+|+|||||++-+..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799998999988999998950
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.23 E-value=0.049 Score=26.24 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|.+|+|||||++-+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.17 E-value=0.023 Score=28.28 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-++++|++|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.11 E-value=0.051 Score=26.16 Aligned_cols=23 Identities=26% Similarity=0.292 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-++++|.+|+|||||++-+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=0.047 Score=26.36 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999819999998969
Q 000937 659 TALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g 678 (1218)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.037 Score=26.98 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|.+|+|||||++-+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.00 E-value=0.028 Score=27.75 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.053 Score=26.06 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-++++|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.83 E-value=0.058 Score=25.78 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+.++|++|+|||+|++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.80 E-value=0.055 Score=25.96 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999819999998969
Q 000937 658 LTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g 678 (1218)
-+.++|.+|+|||||++-+.-
T Consensus 4 KivllG~~~vGKTsll~r~~f 24 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRI 24 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999998999998999998846
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.06 Score=25.70 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|.+|+|||||++-+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.74 E-value=0.047 Score=26.38 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-++|+|-+.+|||||+++|++-.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 48888999998899999997799
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.73 E-value=0.073 Score=25.17 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999995999819999998969
Q 000937 657 VLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.059 Score=25.76 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|.+|+|||||++-+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.57 E-value=0.056 Score=25.87 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=5.2
Q ss_pred EEEEEECCCCC
Q ss_conf 28875279988
Q 000937 159 KAMFMDKITNG 169 (1218)
Q Consensus 159 ~ILlLDEpTSg 169 (1218)
.++++=.+=||
T Consensus 52 H~~I~G~tGsG 62 (433)
T d1e9ra_ 52 HLLVNGATGTG 62 (433)
T ss_dssp CEEEEECTTSS
T ss_pred EEEEEECCCCC
T ss_conf 58999079996
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=91.56 E-value=0.06 Score=25.70 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=22.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99968749999959998199999989699
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 651 ~~i~~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
...+.| .+.+.||+|+|||.|.+.|++.
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 436886-3888779985088999999998
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=91.49 E-value=0.059 Score=25.74 Aligned_cols=27 Identities=26% Similarity=0.124 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 687499999599981999999896999
Q 000937 654 RPGVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 654 ~~G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+.+..+.+.||+|+|||++.+.|++..
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 976769998999988899999999985
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.48 E-value=0.065 Score=25.48 Aligned_cols=20 Identities=45% Similarity=0.569 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999819999998969
Q 000937 659 TALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g 678 (1218)
++++|++|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.47 E-value=0.051 Score=26.16 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.39 E-value=0.068 Score=25.39 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-+.++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.37 E-value=0.078 Score=25.02 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999959998199999989699
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
.+++|=|+-||||||+++.|+-.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~ 25 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 19999899888599999999998
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.32 E-value=0.068 Score=25.38 Aligned_cols=48 Identities=6% Similarity=0.061 Sum_probs=36.3
Q ss_pred HHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 509967798399999-999999999999999986598899995489988
Q 000937 785 VANPSIIFMDEPTTG-LDARAAAIVMRAVKNVADTGRTIVCTIHQPSID 832 (1218)
Q Consensus 785 ~~~p~illlDEPtsg-LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~ 832 (1218)
+.+.+++++|+--.= -+......+..++..+...|+.+|+++..+..+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~ 143 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQK 143 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 7621301011265505865778899999998763166389954875100
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.27 E-value=0.056 Score=25.90 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-+.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.27 E-value=0.071 Score=25.27 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999819999998969
Q 000937 658 LTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g 678 (1218)
-+.++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.054 Score=25.98 Aligned_cols=23 Identities=30% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-++++|.+|+|||||++-+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.57 E-value=0.083 Score=24.85 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-+.++|.+|+|||+|++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.51 E-value=0.062 Score=25.64 Aligned_cols=23 Identities=48% Similarity=0.625 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999959998199999989699
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-++.|.|.=|||||||++-+...
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998648889999999999856
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.39 E-value=0.095 Score=24.49 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=21.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 68749999959998199999989699
Q 000937 654 RPGVLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 654 ~~G~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
+|...+.+.||+|+|||.+.+.|+..
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87669999788862489999999998
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.24 E-value=0.14 Score=23.46 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=23.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9996874999995999819999998969
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 651 ~~i~~G~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
..+-.|+-.+|.|++|+|||||+.-++.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5636788777667999898999999999
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.15 E-value=0.1 Score=24.28 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998199999989699
Q 000937 659 TALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
++++|.+|+|||+|++-+...
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=90.12 E-value=0.11 Score=24.19 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=20.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 687499999599981999999896999
Q 000937 654 RPGVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 654 ~~G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
+++ -+.++||+|+|||-|.+.|+...
T Consensus 67 p~~-niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 67 SKS-NILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCC-CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCC-CEEEECCCCCCHHHHHHHHHHHC
T ss_conf 875-32441899863789999998644
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.87 E-value=0.12 Score=23.87 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999819999998969
Q 000937 658 LTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g 678 (1218)
-++++|..++|||||++.|..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999994789849999999999
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.57 E-value=0.12 Score=23.77 Aligned_cols=25 Identities=40% Similarity=0.425 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999995999819999998969998
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
.-..|+||+|.|||++..-++.+..
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8967988898867799999999998
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.56 E-value=0.17 Score=23.02 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=23.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6874999995999819999998969998
Q 000937 654 RPGVLTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 654 ~~G~~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
+|.=-++++|.-.+|||||++.|.|...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=88.84 E-value=0.065 Score=25.48 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999959998199999989699989
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGRKTS 682 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~~~~ 682 (1218)
.-+.|.||.|+|||||.+.+++..++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 70899889985299999999873798
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.37 E-value=0.15 Score=23.23 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-+.++|.+|+|||||++-+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999999679
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=88.08 E-value=0.12 Score=23.95 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=16.5
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHH
Q ss_conf 032103899968749999959998199999
Q 000937 644 QLLDDVTGTLRPGVLTALMGVSGAGKTTLL 673 (1218)
Q Consensus 644 ~iL~~vs~~i~~G~~~ai~GpsGaGKTTLl 673 (1218)
.++++. .| -+.|.|+.||||||.|
T Consensus 18 ~~v~~~-----~g-~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 18 EAVRTT-----EG-PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHCC-----SS-CEEEEECTTSCHHHHH
T ss_pred HHHHCC-----CC-CEEEEECCCCCHHHHH
T ss_conf 998299-----99-9899952986689999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.87 E-value=0.18 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998199999989699
Q 000937 658 LTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
-+.++|..|+|||||++-+...
T Consensus 4 KivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998889999988408
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=87.41 E-value=0.15 Score=23.22 Aligned_cols=20 Identities=45% Similarity=0.735 Sum_probs=17.1
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 68749999959998199999
Q 000937 654 RPGVLTALMGVSGAGKTTLL 673 (1218)
Q Consensus 654 ~~G~~~ai~GpsGaGKTTLl 673 (1218)
+.|++..+.|.||.|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.37 E-value=0.14 Score=23.50 Aligned_cols=60 Identities=20% Similarity=0.359 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3358887788989999999999995099677983999999999999999999999865988999954899
Q 000937 761 LVGIPGVSGLSTEQRKRLTIGVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830 (1218)
Q Consensus 761 ~~g~~~~~~lSgGerkrv~ia~~L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 830 (1218)
.+..||.-+.++.-..=+. +.+--+++.| +..|.-+.+...+.... +.+..+++.+...+
T Consensus 100 liDtPGh~dF~~ev~~al~-----~~D~allVVd-a~eGv~~qT~~~~~~a~----~~~~p~i~viNKiD 159 (341)
T d1n0ua2 100 LIDSPGHVDFSSEVTAALR-----VTDGALVVVD-TIEGVCVQTETVLRQAL----GERIKPVVVINKVD 159 (341)
T ss_dssp EECCCCCCSSCHHHHHHHH-----TCSEEEEEEE-TTTBSCHHHHHHHHHHH----HTTCEEEEEEECHH
T ss_pred EECCCCCHHHHHHHHHHHH-----HCCCEEEEEE-CCCCCCHHHHHHHHHHH----HCCCCEEEEEECCC
T ss_conf 9737873889999998875-----2372499986-56682046999999998----76998699987726
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.00 E-value=0.26 Score=21.87 Aligned_cols=41 Identities=10% Similarity=0.218 Sum_probs=27.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9677983999999999999999999999865988999954899
Q 000937 788 PSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPS 830 (1218)
Q Consensus 788 p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 830 (1218)
.+++++||.-. |+..++..+.+.+..- ..+..+|+++++++
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~-~~~~~~il~tn~~~ 156 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 156 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCC-CCCEEEEEECCCCC
T ss_conf 87999978110-8999999999998568-98869999738856
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=86.96 E-value=0.16 Score=23.14 Aligned_cols=19 Identities=47% Similarity=0.768 Sum_probs=16.5
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 8749999959998199999
Q 000937 655 PGVLTALMGVSGAGKTTLL 673 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl 673 (1218)
.|++..+.|.||.|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEECCCCCCCCCCC
T ss_conf 9988999736879814221
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.78 E-value=0.17 Score=22.91 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599981999999896999
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
.+.|=|+-|+||||+++.|+...
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998986778999999999981
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.58 E-value=0.25 Score=21.92 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999819999998969998
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
-..|+||+|.|||++..-|+.+..
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 739983587544799999999998
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.55 E-value=0.29 Score=21.57 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999959998199999989699
Q 000937 657 VLTALMGVSGAGKTTLLDVLAGR 679 (1218)
Q Consensus 657 ~~~ai~GpsGaGKTTLl~~l~g~ 679 (1218)
..+.+.||+|+||||+.+.++..
T Consensus 25 h~lLl~Gp~G~GKtt~a~~~a~~ 47 (207)
T d1a5ta2 25 HALLIQALPGMGDDALIYALSRY 47 (207)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 37988899987599999999982
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=86.40 E-value=0.18 Score=22.81 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=13.8
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 8749999959998199999
Q 000937 655 PGVLTALMGVSGAGKTTLL 673 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl 673 (1218)
.| -+.|.|+.|+||||.+
T Consensus 14 ~~-~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 14 TG-PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp SS-EEEECCCTTSCHHHHH
T ss_pred CC-CEEEEEECCCCHHHHH
T ss_conf 99-9899962884389999
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=86.06 E-value=0.38 Score=20.81 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 874999995999819999998969998
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
.+-.++++|-+.+|||||+|.|.|+..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=86.03 E-value=0.3 Score=21.43 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999819999998969998
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
.+.|=|+-|+||||+++.|+....
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999988866789999999999865
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.75 E-value=0.25 Score=21.94 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599981999999896
Q 000937 658 LTALMGVSGAGKTTLLDVLA 677 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~ 677 (1218)
-++++|.-++|||||+..|.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 89999447999999999999
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=85.70 E-value=0.31 Score=21.35 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 874999995999819999998969
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
|.=-++++|.-++|||||++.|.+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 971899995889809999999999
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=85.16 E-value=0.35 Score=21.01 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=17.1
Q ss_pred CCEEEEEECCCCCCHHHHHHH
Q ss_conf 874999995999819999998
Q 000937 655 PGVLTALMGVSGAGKTTLLDV 675 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~ 675 (1218)
.+.++.|.||.|+||||++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred CCCEEEEECCCCCCCEEHHHH
T ss_conf 088599976898875216999
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.76 E-value=0.26 Score=21.87 Aligned_cols=19 Identities=53% Similarity=0.807 Sum_probs=16.8
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 8749999959998199999
Q 000937 655 PGVLTALMGVSGAGKTTLL 673 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl 673 (1218)
.|++..+.|-||.|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCCCCCE
T ss_conf 8987999736778812051
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.27 E-value=0.31 Score=21.35 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=34.7
Q ss_pred CCEEEEECCCCCCCHH---HHHHHHHHHHHH-HHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCC
Q ss_conf 9677983999999999---999999999999-86598899995489988998515488991397999984799
Q 000937 788 PSIIFMDEPTTGLDAR---AAAIVMRAVKNV-ADTGRTIVCTIHQPSIDIFESFDELILLKTGGRIIYSGPLG 856 (1218)
Q Consensus 788 p~illlDEPtsgLD~~---~~~~i~~~l~~l-~~~g~tii~~~H~~~~~~~~~~d~~~~l~~~G~~v~~G~~~ 856 (1218)
+-||+.||--+=++.. .....-++|+-. ++....+|.++.. +-|..+.+---|.+-=+.|.-.+++
T Consensus 116 ~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~---~ey~~~e~d~al~rrF~~v~v~ep~ 185 (387)
T d1qvra2 116 EVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTL---DEYREIEKDPALERRFQPVYVDEPT 185 (387)
T ss_dssp SEEEEECCC-------------------HHHHHTTCCCEEEEECH---HHHHHHTTCTTTCSCCCCEEECCCC
T ss_pred CEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCH---HHHHHHCCCHHHHHHCCCCCCCCCC
T ss_conf 669872408888427778774138999999973788516663689---9998763367999824611279986
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.87 E-value=0.22 Score=22.26 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999819999998969998
Q 000937 658 LTALMGVSGAGKTTLLDVLAGRKT 681 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~g~~~ 681 (1218)
.+.|=|+-|+||||+++.|+....
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999988877889999999999873
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=83.81 E-value=0.48 Score=20.19 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=12.8
Q ss_pred ECCCCHHHHHCCCEEEEECCCCEE
Q ss_conf 616993578201408898198188
Q 000937 197 LLQPSPETFHLFDDIILMAEGKIL 220 (1218)
Q Consensus 197 ihQps~~~~~lfD~I~vL~~G~iv 220 (1218)
+..+.++-|..+=++..-..|+++
T Consensus 144 ~~N~NSSRfgk~~~l~f~~~g~i~ 167 (684)
T d1lkxa_ 144 LRNDNSSRFGKYMEMQFNAVGSPI 167 (684)
T ss_dssp SSCSSCBCSEEEEEEEECTTCCEE
T ss_pred CCCCCCCCEEEEEEEEECCCCCEE
T ss_conf 579986750247999964789572
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.28 E-value=0.86 Score=18.64 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 874999995999819999998969
Q 000937 655 PGVLTALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 655 ~G~~~ai~GpsGaGKTTLl~~l~g 678 (1218)
...+++|.|..|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 840899977997888999999998
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=82.18 E-value=0.55 Score=19.85 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=9.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 8875279988473669999999999
Q 000937 160 AMFMDKITNGLDISTSFQIVTCLQH 184 (1218)
Q Consensus 160 ILlLDEpTSgLDs~sa~~i~~~L~~ 184 (1218)
|++.=|.=||=- .+++.+++.|-.
T Consensus 94 IiisGeSGaGKT-e~~k~il~yL~~ 117 (710)
T d1br2a2 94 ILCTGESGAGKT-ENTKKVIQYLAV 117 (710)
T ss_dssp EEEECSTTSSHH-HHHHHHHHHHHH
T ss_pred EEEEECCCCCHH-HHHHHHHHHHHH
T ss_conf 999718988889-999999999998
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=82.14 E-value=0.48 Score=20.17 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999819999998969
Q 000937 659 TALMGVSGAGKTTLLDVLAG 678 (1218)
Q Consensus 659 ~ai~GpsGaGKTTLl~~l~g 678 (1218)
++++|.-.+|||||++.|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99993789898999999999
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=82.03 E-value=0.31 Score=21.34 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599981999999896
Q 000937 658 LTALMGVSGAGKTTLLDVLA 677 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~ 677 (1218)
-++++|.-++|||||++.|.
T Consensus 26 Ni~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 26 NIVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEEECGGGTHHHHHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHH
T ss_conf 99999527989999999999
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.80 E-value=0.31 Score=21.32 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=22.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999687499999599981999999896
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLA 677 (1218)
Q Consensus 651 ~~i~~G~~~ai~GpsGaGKTTLl~~l~ 677 (1218)
..+-.|+-.+|+|++|+|||+|+.-+.
T Consensus 63 ~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 63 VPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 676678778765688888589999999
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.79 E-value=0.5 Score=20.11 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599981999999896
Q 000937 658 LTALMGVSGAGKTTLLDVLA 677 (1218)
Q Consensus 658 ~~ai~GpsGaGKTTLl~~l~ 677 (1218)
-++++|..++|||||...|.
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 79999478998999999999
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=81.71 E-value=0.58 Score=19.69 Aligned_cols=32 Identities=16% Similarity=0.013 Sum_probs=19.2
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 099628875279988473669999999999977
Q 000937 155 VGPIKAMFMDKITNGLDISTSFQIVTCLQHLAH 187 (1218)
Q Consensus 155 ~~p~~ILlLDEpTSgLDs~sa~~i~~~L~~la~ 187 (1218)
.||++.--. |=-+.|+.-++-.|+..|+..-.
T Consensus 33 ~nP~~~~~v-~Dl~~L~~l~E~~vl~~L~~Ry~ 64 (712)
T d1d0xa2 33 RNPIKFDGV-EDMSELSYLNEPAVFHNLRVRYN 64 (712)
T ss_dssp CCCGGGTTC-SBGGGCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCC-CHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 398401497-53333898988999999999976
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=80.44 E-value=0.29 Score=21.51 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=22.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999687499999599981999999896
Q 000937 651 GTLRPGVLTALMGVSGAGKTTLLDVLA 677 (1218)
Q Consensus 651 ~~i~~G~~~ai~GpsGaGKTTLl~~l~ 677 (1218)
..+-.|+-.+|.|++|+|||+|+..+.
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 454677667600677888579999977
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=80.40 E-value=0.7 Score=19.21 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7499999599981999999896999
Q 000937 656 GVLTALMGVSGAGKTTLLDVLAGRK 680 (1218)
Q Consensus 656 G~~~ai~GpsGaGKTTLl~~l~g~~ 680 (1218)
-.++.+.||.++|||+++++|....
T Consensus 104 ~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1799998589887789999999983
|