Citrus Sinensis ID: 000961

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------121

MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGDWGEELDMVDVDGLQNGDVAAILEDGEVAEEGEEEEGGWDLEDLELPPEAETPKAPVNARSAVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR

cccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEEccccEEEEEEcccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEccccccEEEcccccccccccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEcccccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEcccEEEEEEccEEEEEEccccccEEEEEEcccccccccccccEEEEcccccEEEEEEcccccEEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEccccEEEEcccccEEEcccccEEEEEEEEEcccEEEEEccccEEEEEEcccEEEEEEccccEEEEEEEccEEEEEEccccEEEEEccHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHccccccccHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHccEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccEEEcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEccccc

cccEEEcccccEEEEEccccccEEEEEccccEEEEEEccccEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEEcccccEEEEEEcccEEEEEEccccccccccccccHHcccccccccccccccEEEEEEccccccccEEEccccccEEEEcccccEEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEcccEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccEEEEEEccEEEEEEccccccccEEEEEccccccccccccEEEEcccccEEEEEEcccccEEEEEEEcccccccccccHHHccccccEEEEEEEccEEEEEccccEEEEEEccccEEEEEcccccccHEEEccccEEEEEcccEEEEEEcHcccEEEEEEccccEEEEEcccccEEEEEEccEEEEEEccccEEEEEEcEEEEEEEEEccccEEEEEccccEEEEEccccEEEEEEccccEEEEEEcccEEEEEcccccEEEEEEcccHHHHHHHHccccccHHHHHHHHHHHccccHHEEEEEcccccHEEEEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccEEEHEHcccHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHccccccccccccHccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccHccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccEccccccccHHHHHHHccccHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccEEEEccccccEEEEcccccEccccccccccccccccccccccccEEEEEEEEEEcccccEEEEEccccc

mltkfetksnrvkglsfhskrpwiLASLHSGVIQLWDYRMGTLIdrfdehdgpvrgvhfhksqplfvsggddykIKVWNYKMHRCLFTLLGHLDyirtvqfhheypwivsasddqtiRIWNWQSRTCISvltghnhyvmcasfhpkedlvvsasldQTVRVWDIGalrkktvspaddiLRLSQMNTDLFGGVDAVVKYVLEGHdrgvnwaafhptlplivsgaddRQVKLWRMNETKAWEVDTlrghmnnvscVMFHAKQDIivsnsedksirvWDVTKRTGVQTFRREHDRFWIlashpemnllaaghdsgMIVFKLererpafavsgdslfyAKDRFLRYyefstqkdtqvipirrpgstslnqsprtlsysptenAVLICSdvdggsyelyvipkdsigrgdsvqdakkglggsaiFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTgnllcraeDRVVIFDLQqrlvlgdlqtpFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHetirvksgawddngVFIYTTLNHIKyclpngdsgiirtldvpiyitkvsgntifcldrdgknraiVIDATEYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAkeidekdhWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAelgdnvpsvpegkapsllmppspvvcsgdwplLRVMKGIFeggldnigrgavdeeeeavegdwgeeldmvdvdglqngdvaailedgevaeegeeeeggwdledlelppeaetpkapvnarsavfvaptpgmpvsqIWIQRSSLAAEHAAAGNFDTAMRLLNRQlgirnfapLKSMFLdlhsgshtylrafssapviplavergwnesaspnvrgppalvfNFSQLEEKLKASYKATTTGKFTEALRLFLSILHtiplivvdsrrevDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRlletnptiesqSKTARQVLQAAernptdatqlnydfrnpfvicgathvpiyrgqkdvscpycttrfvpsqegqlcsvcdlavvgvdasgllcsptqir

mltkfetksnrvkglsfhskrpwilaSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHfhksqplfvsggDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVwdigalrkktvspaddiLRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQdiivsnsedksirvwdvtkrtgvqtfrrEHDRFWILASHPEMNLLAAGHDSGMIVFKLERERpafavsgdslFYAKDRFLRYYEfstqkdtqvipirrpgstslnqsprtlsyspteNAVLICSDVDGGSYELYVIpkdsigrgdsVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLknevvkksilpIAADAIFYAGTGNLLCRAEDRVVIFDLQqrlvlgdlqTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHEtirvksgawddNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSgntifcldrdgKNRAIVIDATEYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEgkapsllmppsPVVCSGDWPLLRVMKGIFEGgldnigrgavDEEEEAVEGDWGEELDMVDVDGLQNGDVAAILEDGEVAEEGEEEEGGWDLEDLELPPEAETPKAPVNARSAVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHtiplivvdsrrevDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLEtnptiesqskTARQVLQAAErnptdatqlnyDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDasgllcsptqir

MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQvlvknlknevvkkSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGavdeeeeavegdwgeeLDMVDVDGLQNGDVAAIledgevaeegeeeeggwdledlelppeAETPKAPVNARSAVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR

**************LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVI**********************ENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAE*********************PVVCSGDWPLLRVMKGIFEGGLDNIGRGAVD****AVEGDWGEELDMVDVDGLQNGDVAAI****************************************VFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFSSAPVIPLAVERGWNE*******GPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLL***************************TQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLC******

MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSP***I*RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLK*AEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERL*************************************MK*************************WGEELDMVDV********AAILEDGEVAEEGEEEEGGWDLEDLEL*********************************RSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFSSAPVIPLAV**************PPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLEL***********QQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLET***********************DATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPT***

**************LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGDWGEELDMVDVDGLQNGDVAAILEDGEV**********WDLEDLELPPEAETPKAPVNARSAVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR

*LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK*******D******MNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIG*******************************************************DLE*****************VFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPT***

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1208	2.2.26 [Sep-21-2011]
Q94A40		1216	Coatomer subunit alpha-1	yes	no	0.997	0.990	0.858	0.0
Q9SJT9		1218	Coatomer subunit alpha-2	no	no	0.999	0.990	0.858	0.0
Q9AUR8		1218	Coatomer subunit alpha-1	yes	no	0.997	0.989	0.808	0.0
Q0J3D9		1218	Coatomer subunit alpha-3	yes	no	0.997	0.989	0.809	0.0
Q9AUR7		1218	Coatomer subunit alpha-2	yes	no	0.997	0.989	0.800	0.0
Q8CIE6		1224	Coatomer subunit alpha OS	yes	no	0.985	0.973	0.566	0.0
Q27954		1224	Coatomer subunit alpha OS	yes	no	0.985	0.973	0.566	0.0
P53621		1224	Coatomer subunit alpha OS	yes	no	0.985	0.973	0.567	0.0
Q55FR9		1221	Coatomer subunit alpha OS	yes	no	0.965	0.954	0.504	0.0
Q96WV5		1207	Putative coatomer subunit	yes	no	0.966	0.967	0.456	0.0

>sp\|Q94A40\|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2	Back alignment and function desciption

 Score = 2198 bits (5695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1047/1219 (85%), Positives = 1140/1219 (93%), Gaps = 14/1219 (1%)

Query: 1    MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
            MLTKFETKSNRVKGLSFH KRPWILASLHSGVIQLWDYRMGTLIDRFDEH+GPVRGVHFH
Sbjct: 1    MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFH 60

Query: 61   KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
             SQPLFVSGGDDYKIKVWNYK HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
Sbjct: 61   NSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120

Query: 121  NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180
            NWQSRTC+SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDI+R
Sbjct: 121  NWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIMR 180

Query: 181  LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240
            L+QMN+DLFGGVDA+VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE
Sbjct: 181  LTQMNSDLFGGVDAIVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240

Query: 241  VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
            VDTLRGHMNNVS VMFHAKQDIIVSNSEDKSIRVWD TKRTG+QTFRREHDRFWILA HP
Sbjct: 241  VDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAVHP 300

Query: 301  EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360
            EMNLLAAGHDSGMIVFKLERERPAFA+SGDSLFYAKDRFLRYYE+STQ+D+QVIPIRRPG
Sbjct: 301  EMNLLAAGHDSGMIVFKLERERPAFALSGDSLFYAKDRFLRYYEYSTQRDSQVIPIRRPG 360

Query: 361  STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIF 420
            + SLNQSPRTLSYSPTENAVLICSD+DGGSYELY+IPKDS+GR D VQDAK+G GGSA+F
Sbjct: 361  TPSLNQSPRTLSYSPTENAVLICSDLDGGSYELYIIPKDSVGRSDVVQDAKRGTGGSAVF 420

Query: 421  IARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQ 480
            IARNRFAVL+KS++QVLVKNLKNEVVKKS LPI  DAIFYAGTGNLLCR+ED+VVIFDLQ
Sbjct: 421  IARNRFAVLEKSTSQVLVKNLKNEVVKKSPLPIPTDAIFYAGTGNLLCRSEDKVVIFDLQ 480

Query: 481  QRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDN 540
            QRLVLG+LQTPFV+YVVWS+DMESVALLSKH IIIASKKLV QCTLHETIRVKSGAWDDN
Sbjct: 481  QRLVLGELQTPFVRYVVWSSDMESVALLSKHTIIIASKKLVLQCTLHETIRVKSGAWDDN 540

Query: 541  GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATE-- 598
            GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKN+AI I+ATE  
Sbjct: 541  GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNKAITINATEYI 600

Query: 599  ---------YDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI 649
                     YDHVMSMI+NSQLCGQAMIAYLQQKGFPEVALHFV+DER RFNLALESGNI
Sbjct: 601  FKLSLLRKRYDHVMSMIKNSQLCGQAMIAYLQQKGFPEVALHFVEDERIRFNLALESGNI 660

Query: 650  QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSK 709
             +AVASA +I+EKDHWYRLGVEALRQGN+GIVE+AYQ+TKNFERLSFLYLITGN+DKLSK
Sbjct: 661  SVAVASATQINEKDHWYRLGVEALRQGNSGIVEFAYQQTKNFERLSFLYLITGNLDKLSK 720

Query: 710  MLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAEL 769
            ++KIAEVKN+VMGQFHNALYLGDVKERVKILE+AGHLPLAYITASVHGL D+AERLA EL
Sbjct: 721  LMKIAEVKNNVMGQFHNALYLGDVKERVKILENAGHLPLAYITASVHGLNDIAERLATEL 780

Query: 770  GDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGD 829
            GDNVPS+PEGK PSLLMPP+P++C GDWPLLRVMKGIFEGGL++  RG   +EE+ VEGD
Sbjct: 781  GDNVPSLPEGKTPSLLMPPTPIMCGGDWPLLRVMKGIFEGGLESADRGGTVDEED-VEGD 839

Query: 830  WGEELDMVDVDGLQNGDVAAILEDGEVAEEGEEEEGGWDLEDLELPPEAETPKAPVNARS 889
            WGEELD ++VDG++N D+  IL   E  EE  +EEGGW LEDL LPPE +TPKA  NARS
Sbjct: 840  WGEELD-INVDGMENRDIEDILAAAEAGEEENDEEGGWGLEDLVLPPELDTPKASANARS 898

Query: 890  AVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHS 949
            +VFV P  GMPVSQ W Q+SSLAAE AAAG+FDTAMRLL+RQLGI+NF PLKSMFLDL +
Sbjct: 899  SVFVTPPQGMPVSQSWSQKSSLAAEQAAAGSFDTAMRLLHRQLGIKNFTPLKSMFLDLFN 958

Query: 950  GSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKF 1009
            GSH+YLRAFSS PV+PLA+ERGW+ES+SPNVR PPALV++FSQL+EKLK+ YKATTTGKF
Sbjct: 959  GSHSYLRAFSSCPVVPLAIERGWSESSSPNVRSPPALVYDFSQLDEKLKSGYKATTTGKF 1018

Query: 1010 TEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQE 1069
            TEALRLFLSILHTIPL+VV++RREVDEVKELI IVKEYVLGLQ+ELKRRE+KDDPVRQQE
Sbjct: 1019 TEALRLFLSILHTIPLVVVETRREVDEVKELIVIVKEYVLGLQMELKRREMKDDPVRQQE 1078

Query: 1070 LAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVL 1129
            LAAYFTHCNLQ PHLRLALL+AM VC+K KNLATA NFARRLLET+P ++SQ+K ARQV+
Sbjct: 1079 LAAYFTHCNLQTPHLRLALLSAMGVCYKAKNLATASNFARRLLETSP-VDSQAKMARQVV 1137

Query: 1130 QAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCD 1189
            QAAERN TD T+LNYDFRNPFV+CG+T+VPIYRGQKDVSCPYCT RFVP+QEG +C+VCD
Sbjct: 1138 QAAERNMTDETKLNYDFRNPFVVCGSTYVPIYRGQKDVSCPYCTARFVPNQEGNICTVCD 1197

Query: 1190 LAVVGVDASGLLCSPTQIR 1208
            LAV+G DASGLLCSP+Q+R
Sbjct: 1198 LAVIGADASGLLCSPSQVR 1216

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SJT9\|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1	Back alignment and function description

>sp\|Q9AUR8\|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1	Back alignment and function description

>sp\|Q0J3D9\|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1	Back alignment and function description

>sp\|Q9AUR7\|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1	Back alignment and function description

>sp\|Q8CIE6\|COPA_MOUSE Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=2	Back alignment and function description

>sp\|Q27954\|COPA_BOVIN Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1	Back alignment and function description

>sp\|P53621\|COPA_HUMAN Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2	Back alignment and function description

>sp\|Q55FR9\|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1	Back alignment and function description

>sp\|Q96WV5\|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1208
255543813		1217	coatomer alpha subunit, putative [Ricinu	0.998	0.990	0.913	0.0
449461607		1217	PREDICTED: coatomer subunit alpha-1-like	0.998	0.990	0.900	0.0
224133400		1218	predicted protein [Populus trichocarpa]	0.999	0.990	0.910	0.0
224119200		1220	predicted protein [Populus trichocarpa]	1.0	0.990	0.909	0.0
255577244		1217	coatomer alpha subunit, putative [Ricinu	0.998	0.990	0.881	0.0
225458111		1217	PREDICTED: coatomer subunit alpha-1 [Vit	0.998	0.990	0.865	0.0
356538727		1221	PREDICTED: coatomer subunit alpha-1-like	0.998	0.987	0.870	0.0
356545092		1221	PREDICTED: coatomer subunit alpha-2-like	0.998	0.987	0.868	0.0
297840319		1217	hypothetical protein ARALYDRAFT_475134 [	0.997	0.990	0.859	0.0
449516173		1219	PREDICTED: coatomer subunit alpha-1-like	0.999	0.990	0.872	0.0

>gi\|255543813\|ref\|XP_002512969.1\| coatomer alpha subunit, putative [Ricinus communis] gi\|223547980\|gb\|EEF49472.1\| coatomer alpha subunit, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 2345 bits (6078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1114/1219 (91%), Positives = 1173/1219 (96%), Gaps = 13/1219 (1%)

Query: 1    MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
            MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
Sbjct: 1    MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60

Query: 61   KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
            KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
Sbjct: 61   KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120

Query: 121  NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180
            NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
Sbjct: 121  NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180

Query: 181  LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240
            LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP LPLIVSGADDRQVKLWRMN+TKAWE
Sbjct: 181  LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPNLPLIVSGADDRQVKLWRMNDTKAWE 240

Query: 241  VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
            VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP
Sbjct: 241  VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300

Query: 301  EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360
            EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLR+YEFSTQ+DTQVIPIRRPG
Sbjct: 301  EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRFYEFSTQRDTQVIPIRRPG 360

Query: 361  STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIF 420
            +TSLNQSPRTLSYSPTENAVLICSDVDGG+YELYVIPKDSI RGD+VQ+AK+G GGSAIF
Sbjct: 361  TTSLNQSPRTLSYSPTENAVLICSDVDGGTYELYVIPKDSISRGDTVQEAKRGAGGSAIF 420

Query: 421  IARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQ 480
            +ARNRFAVLDKSSNQVLVKNLKNEVVKKS LPIAADAIFYAGTGNLLCRAEDRVVIFDLQ
Sbjct: 421  VARNRFAVLDKSSNQVLVKNLKNEVVKKSSLPIAADAIFYAGTGNLLCRAEDRVVIFDLQ 480

Query: 481  QRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDN 540
            QR+VLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDN
Sbjct: 481  QRIVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDN 540

Query: 541  GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATE-- 598
            GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIY+TKVSGNTIFCLDRDGK+R I IDATE  
Sbjct: 541  GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYVTKVSGNTIFCLDRDGKSRHIDIDATEYM 600

Query: 599  ---------YDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI 649
                     YDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI
Sbjct: 601  FKLSLLRKKYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI 660

Query: 650  QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSK 709
            QIAVASAKEIDEKDHWYRLGVEALRQGN+GIVEYAYQRTKNFERLSFLYLITGN++KLSK
Sbjct: 661  QIAVASAKEIDEKDHWYRLGVEALRQGNSGIVEYAYQRTKNFERLSFLYLITGNLEKLSK 720

Query: 710  MLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAEL 769
            MLKIAEVKNDVMGQFHNALYLGD++ERVKILE++GHLPLAYITA VHGL+DVAERLAAEL
Sbjct: 721  MLKIAEVKNDVMGQFHNALYLGDIQERVKILENSGHLPLAYITAKVHGLEDVAERLAAEL 780

Query: 770  GDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGD 829
            GDNVPS+PEGK PSLL+PP+P++   DWPLLRVM+GIF+GGLD+ G+GAVDE+EEA EGD
Sbjct: 781  GDNVPSLPEGKVPSLLIPPAPIMSGSDWPLLRVMRGIFQGGLDDTGKGAVDEDEEAAEGD 840

Query: 830  WGEELDMVDVDGLQNGDVAAILEDGEVAEEGEEEEGGWDLEDLELPPEAETPKAPVNARS 889
            WG +LD+ DVDGLQNGDV+ ILEDGEVA+E    EGGWDLEDLELPPEA+TP+A V+ARS
Sbjct: 841  WGGDLDIDDVDGLQNGDVSGILEDGEVADEN--GEGGWDLEDLELPPEADTPRASVSARS 898

Query: 890  AVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHS 949
            +VFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPL+SMFLDLH+
Sbjct: 899  SVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLRSMFLDLHT 958

Query: 950  GSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKF 1009
            GSHTYLRAFSS PVI LAVERGW+ESASPNVRGPPALVFNFSQLEEKLKA Y+ATT GKF
Sbjct: 959  GSHTYLRAFSSTPVISLAVERGWSESASPNVRGPPALVFNFSQLEEKLKAGYRATTAGKF 1018

Query: 1010 TEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQE 1069
            TEALRLFLSILHT+PLIVV+SRREVDEVKELI IVKEYVL  ++ELKRRE+KD+P+RQQE
Sbjct: 1019 TEALRLFLSILHTVPLIVVESRREVDEVKELIIIVKEYVLASKMELKRREMKDNPIRQQE 1078

Query: 1070 LAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVL 1129
            LAAYFTHCNLQMPHLRLAL NAM+VCFK KNLATA NFARRLLETNPTIE+Q+K ARQVL
Sbjct: 1079 LAAYFTHCNLQMPHLRLALQNAMTVCFKAKNLATAANFARRLLETNPTIENQAKMARQVL 1138

Query: 1130 QAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCD 1189
            QAAERN TDA++LNYDFRNPFV CGAT+VPIYRGQKD+SCP+C++RFVPSQEGQLCSVCD
Sbjct: 1139 QAAERNMTDASELNYDFRNPFVTCGATYVPIYRGQKDISCPFCSSRFVPSQEGQLCSVCD 1198

Query: 1190 LAVVGVDASGLLCSPTQIR 1208
            LAVVG DASGLLCSPTQIR
Sbjct: 1199 LAVVGADASGLLCSPTQIR 1217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449461607\|ref\|XP_004148533.1\| PREDICTED: coatomer subunit alpha-1-like [Cucumis sativus] gi\|449483541\|ref\|XP_004156620.1\| PREDICTED: coatomer subunit alpha-1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224133400\|ref\|XP_002321558.1\| predicted protein [Populus trichocarpa] gi\|222868554\|gb\|EEF05685.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224119200\|ref\|XP_002318013.1\| predicted protein [Populus trichocarpa] gi\|222858686\|gb\|EEE96233.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255577244\|ref\|XP_002529504.1\| coatomer alpha subunit, putative [Ricinus communis] gi\|223531020\|gb\|EEF32873.1\| coatomer alpha subunit, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225458111\|ref\|XP_002279779.1\| PREDICTED: coatomer subunit alpha-1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356538727\|ref\|XP_003537852.1\| PREDICTED: coatomer subunit alpha-1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356545092\|ref\|XP_003540979.1\| PREDICTED: coatomer subunit alpha-2-like [Glycine max]	Back alignment and taxonomy information

>gi\|297840319\|ref\|XP_002888041.1\| hypothetical protein ARALYDRAFT_475134 [Arabidopsis lyrata subsp. lyrata] gi\|297333882\|gb\|EFH64300.1\| hypothetical protein ARALYDRAFT_475134 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449516173\|ref\|XP_004165122.1\| PREDICTED: coatomer subunit alpha-1-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1208
TAIR\|locus:2036823		1216	AT1G62020 [Arabidopsis thalian	0.997	0.990	0.826	0.0
TAIR\|locus:2050064		1218	AT2G21390 [Arabidopsis thalian	0.999	0.990	0.823	0.0
UNIPROTKB\|G3V6T1		1224	Copa "Protein Copa" [Rattus no	0.668	0.660	0.627	0.0
UNIPROTKB\|F1RJX8		1224	COPA "Uncharacterized protein"	0.668	0.660	0.626	0.0
UNIPROTKB\|P53621		1224	COPA "Coatomer subunit alpha"	0.668	0.660	0.627	0.0
MGI\|MGI:1334462		1224	Copa "coatomer protein complex	0.668	0.660	0.626	0.0
UNIPROTKB\|Q27954		1224	COPA "Coatomer subunit alpha"	0.668	0.660	0.626	0.0
ZFIN\|ZDB-GENE-020905-2		1226	copa "coatomer protein complex	0.669	0.659	0.618	0.0
UNIPROTKB\|F1PU93		1214	COPA "Coatomer subunit alpha"	0.659	0.656	0.615	0.0
UNIPROTKB\|H9KZL3		1169	LOC100859596 "Uncharacterized	0.608	0.628	0.652	0.0

TAIR\|locus:2036823 AT1G62020 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 5312 (1875.0 bits), Expect = 0., P = 0.
 Identities = 1007/1219 (82%), Positives = 1097/1219 (89%)

Query:     1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
             MLTKFETKSNRVKGLSFH KRPWILASLHSGVIQLWDYRMGTLIDRFDEH+GPVRGVHFH
Sbjct:     1 MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFH 60

Query:    61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
              SQPLFVSGGDDYKIKVWNYK HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
Sbjct:    61 NSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120

Query:   121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180
             NWQSRTC+SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDI+R
Sbjct:   121 NWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIMR 180

Query:   181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240
             L+QMN+DLFGGVDA+VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE
Sbjct:   181 LTQMNSDLFGGVDAIVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240

Query:   241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
             VDTLRGHMNNVS VMFHAKQDIIVSNSEDKSIRVWD TKRTG+QTFRREHDRFWILA HP
Sbjct:   241 VDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAVHP 300

Query:   301 EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360
             EMNLLAAGHDSGMIVFKLERERPAFA+SGDSLFYAKDRFLRYYE+STQ+D+QVIPIRRPG
Sbjct:   301 EMNLLAAGHDSGMIVFKLERERPAFALSGDSLFYAKDRFLRYYEYSTQRDSQVIPIRRPG 360

Query:   361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIF 420
             + SLNQSPRTLSYSPTENAVLICSD+DGGSYELY+IPKDS+GR D VQDAK+G GGSA+F
Sbjct:   361 TPSLNQSPRTLSYSPTENAVLICSDLDGGSYELYIIPKDSVGRSDVVQDAKRGTGGSAVF 420

Query:   421 IARNRFAVLDKSSNQXXXXXXXXXXXXXSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQ 480
             IARNRFAVL+KS++Q             S LPI  DAIFYAGTGNLLCR+ED+VVIFDLQ
Sbjct:   421 IARNRFAVLEKSTSQVLVKNLKNEVVKKSPLPIPTDAIFYAGTGNLLCRSEDKVVIFDLQ 480

Query:   481 QRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDN 540
             QRLVLG+LQTPFV+YVVWS+DMESVALLSKH IIIASKKLV QCTLHETIRVKSGAWDDN
Sbjct:   481 QRLVLGELQTPFVRYVVWSSDMESVALLSKHTIIIASKKLVLQCTLHETIRVKSGAWDDN 540

Query:   541 GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEY- 599
             GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKN+AI I+ATEY 
Sbjct:   541 GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNKAITINATEYI 600

Query:   600 ----------DHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI 649
                       DHVMSMI+NSQLCGQAMIAYLQQKGFPEVALHFV+DER RFNLALESGNI
Sbjct:   601 FKLSLLRKRYDHVMSMIKNSQLCGQAMIAYLQQKGFPEVALHFVEDERIRFNLALESGNI 660

Query:   650 QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSK 709
              +AVASA +I+EKDHWYRLGVEALRQGN+GIVE+AYQ+TKNFERLSFLYLITGN+DKLSK
Sbjct:   661 SVAVASATQINEKDHWYRLGVEALRQGNSGIVEFAYQQTKNFERLSFLYLITGNLDKLSK 720

Query:   710 MLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAEL 769
             ++KIAEVKN+VMGQFHNALYLGDVKERVKILE+AGHLPLAYITASVHGL D+AERLA EL
Sbjct:   721 LMKIAEVKNNVMGQFHNALYLGDVKERVKILENAGHLPLAYITASVHGLNDIAERLATEL 780

Query:   770 GDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGXXXXXXXXXXXX 829
             GDNVPS+PEGK PSLLMPP+P++C GDWPLLRVMKGIFEGGL++  RG            
Sbjct:   781 GDNVPSLPEGKTPSLLMPPTPIMCGGDWPLLRVMKGIFEGGLESADRGGTVDEEDVEGDW 840

Query:   830 XXXXLDMVDVDGLQNGDVAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXAETPKAPVNARS 889
                 LD ++VDG++N D+  I                            +TPKA  NARS
Sbjct:   841 GEE-LD-INVDGMENRDIEDILAAAEAGEEENDEEGGWGLEDLVLPPELDTPKASANARS 898

Query:   890 AVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHS 949
             +VFV P  GMPVSQ W Q+SSLAAE AAAG+FDTAMRLL+RQLGI+NF PLKSMFLDL +
Sbjct:   899 SVFVTPPQGMPVSQSWSQKSSLAAEQAAAGSFDTAMRLLHRQLGIKNFTPLKSMFLDLFN 958

Query:   950 GSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKF 1009
             GSH+YLRAFSS PV+PLA+ERGW+ES+SPNVR PPALV++FSQL+EKLK+ YKATTTGKF
Sbjct:   959 GSHSYLRAFSSCPVVPLAIERGWSESSSPNVRSPPALVYDFSQLDEKLKSGYKATTTGKF 1018

Query:  1010 TEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQE 1069
             TEALRLFLSILHTIPL+VV++RREVDEVKELI IVKEYVLGLQ+ELKRRE+KDDPVRQQE
Sbjct:  1019 TEALRLFLSILHTIPLVVVETRREVDEVKELIVIVKEYVLGLQMELKRREMKDDPVRQQE 1078

Query:  1070 LAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVL 1129
             LAAYFTHCNLQ PHLRLALL+AM VC+K KNLATA NFARRLLET+P ++SQ+K ARQV+
Sbjct:  1079 LAAYFTHCNLQTPHLRLALLSAMGVCYKAKNLATASNFARRLLETSP-VDSQAKMARQVV 1137

Query:  1130 QAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCD 1189
             QAAERN TD T+LNYDFRNPFV+CG+T+VPIYRGQKDVSCPYCT RFVP+QEG +C+VCD
Sbjct:  1138 QAAERNMTDETKLNYDFRNPFVVCGSTYVPIYRGQKDVSCPYCTARFVPNQEGNICTVCD 1197

Query:  1190 LAVVGVDASGLLCSPTQIR 1208
             LAV+G DASGLLCSP+Q+R
Sbjct:  1198 LAVIGADASGLLCSPSQVR 1216

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009630 "gravitropism" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR\|locus:2050064 AT2G21390 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V6T1 Copa "Protein Copa" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RJX8 COPA "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|P53621 COPA "Coatomer subunit alpha" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1334462 Copa "coatomer protein complex subunit alpha" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q27954 COPA "Coatomer subunit alpha" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-020905-2 copa "coatomer protein complex, subunit alpha" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PU93 COPA "Coatomer subunit alpha" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|H9KZL3 LOC100859596 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJT9	COPA2_ARATH	No assigned EC number	0.8589	0.9991	0.9909	no	no
Q55FR9	COPA_DICDI	No assigned EC number	0.5040	0.9652	0.9549	yes	no
Q96WV5	COPA_SCHPO	No assigned EC number	0.4565	0.9668	0.9676	yes	no
Q8CIE6	COPA_MOUSE	No assigned EC number	0.5664	0.9859	0.9730	yes	no
P53621	COPA_HUMAN	No assigned EC number	0.5672	0.9859	0.9730	yes	no
Q94A40	COPA1_ARATH	No assigned EC number	0.8589	0.9975	0.9909	yes	no
Q27954	COPA_BOVIN	No assigned EC number	0.5664	0.9859	0.9730	yes	no
Q0J3D9	COPA3_ORYSJ	No assigned EC number	0.8091	0.9975	0.9893	yes	no
Q9AUR8	COPA1_ORYSJ	No assigned EC number	0.8083	0.9975	0.9893	yes	no
Q9AUR7	COPA2_ORYSJ	No assigned EC number	0.8009	0.9975	0.9893	yes	no
P53622	COPA_YEAST	No assigned EC number	0.4242	0.9718	0.9775	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00004883001	SubName- Full=Chromosome undetermined scaffold_840, whole genome shotgun sequence; (1218 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036398001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (889 aa)	•	•	•	•	0.739
	GSVIVG00030145001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (568 aa)	•	•	•	•	0.548
	GSVIVG00029848001	SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (241 aa)		•	•	•	0.475
	GSVIVG00032317001	SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_6, whole genome shotgu [...] (948 aa)	•	•	•	•	0.440
	GSVIVG00025293001	SubName- Full=Chromosome chr9 scaffold_33, whole genome shotgun sequence; (949 aa)	•	•	•	•	0.421

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1208
pfam06957		421	pfam06957, COPI_C, Coatomer (COPI) alpha subunit C	0.0
pfam04053		429	pfam04053, Coatomer_WDAD, Coatomer WD associated r	1e-161
cd00200		289	cd00200, WD40, WD40 domain, found in a number of e	3e-73
cd00200		289	cd00200, WD40, WD40 domain, found in a number of e	2e-44
cd00200		289	cd00200, WD40, WD40 domain, found in a number of e	1e-40
COG2319		466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-33
COG2319		466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-21
COG2319		466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-13
smart00320		40	smart00320, WD40, WD40 repeats	2e-09
pfam00400		39	pfam00400, WD40, WD domain, G-beta repeat	4e-09
pfam00400		39	pfam00400, WD40, WD domain, G-beta repeat	1e-07
smart00320		40	smart00320, WD40, WD40 repeats	2e-07
pfam00400		39	pfam00400, WD40, WD domain, G-beta repeat	9e-07
pfam00400		39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
smart00320		40	smart00320, WD40, WD40 repeats	2e-06
smart00320		40	smart00320, WD40, WD40 repeats	2e-06
pfam00400		39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
smart00320		40	smart00320, WD40, WD40 repeats	7e-06
PLN00181		793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	6e-05

>gnl\|CDD\|219240 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus	Back alignment and domain information

 Score =  627 bits (1618), Expect = 0.0
 Identities = 225/426 (52%), Positives = 282/426 (66%), Gaps = 26/426 (6%)

Query: 804  KGIFEGGLDNIGRG--------------AVDEEEEAVEGDWGEELDM-VDVDGLQNGDVA 848
            KG FEGGL ++G                A  +       DWGE+ D+ +D DG   G+  
Sbjct: 1    KGFFEGGLLSLGGQSATARQPTVGGDKAAAADFAVMGGDDWGEDADLGLDEDGYLEGE-- 58

Query: 849  AILEDGEVAEEGEEEEGGWDLE-DLELPPEAETPK-APVNARSAVFVAPTPGMPVSQIWI 906
              L D E   EG +EEGGWD+E DL LPPE + PK    NA S VFVAP PGM VSQIW 
Sbjct: 59   DGLLDDEEGPEGGDEEGGWDVEDDLVLPPELDVPKDQAGNADSDVFVAPNPGMSVSQIWP 118

Query: 907  QRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFSSAPVIPL 966
              SSLAA+H AAG+F+TAMRLL+ QLG+ NFAP K +FL L++GS T  RA    P + +
Sbjct: 119  NNSSLAADHVAAGSFETAMRLLHDQLGVVNFAPFKDLFLQLYAGSRTSYRALPGLPSVSI 178

Query: 967  AVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLI 1026
              ER W+ES S N  GPPA+ F  SQL ++L+A+Y+ TT GKF EA+  F SIL +IPLI
Sbjct: 179  YPERNWSESNSKN--GPPAVGFKLSQLAKRLQAAYQLTTNGKFGEAVEKFRSILLSIPLI 236

Query: 1027 VVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQ----ELAAYFTHCNLQMP 1082
            VVDS++EV E ++LITI +EY++GL +E KR+EL  D + QQ    ELAAYFTHC LQ  
Sbjct: 237  VVDSKQEVAEAQQLITICREYIVGLLMETKRKELPKDTLEQQKRNCELAAYFTHCKLQPV 296

Query: 1083 HLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQL 1142
            H+ L L +A+++ FK KN  TA +FARRLLE  P     ++ AR+VLQA E+NPTDA QL
Sbjct: 297  HMILTLRSALNLFFKLKNFKTAASFARRLLELAPK-PEVAQQARKVLQACEKNPTDAHQL 355

Query: 1143 NYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLC 1202
            NYD  NPFV+CGA++VPIYRG+ DV CPYC   F P  EG LC+VC++A +G D  GL  
Sbjct: 356  NYDEHNPFVVCGASYVPIYRGKPDVKCPYCGASFSPGFEGNLCTVCEVAEIGKDVIGLRI 415

Query: 1203 SPTQIR 1208
            SP Q R
Sbjct: 416  SPLQSR 421

This family represents the C-terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit. Coatomer (COPI) is a large cytosolic protein complex which forms a coat around vesicles budding from the Golgi apparatus. Such coatomer-coated vesicles have been proposed to play a role in many distinct steps of intracellular transport. Note that many family members also contain the pfam04053 domain. Length = 421

>gnl\|CDD\|217864 pfam04053, Coatomer_WDAD, Coatomer WD associated region	Back alignment and domain information

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

Back alignment and domain information

>gnl\|CDD\|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|197651 smart00320, WD40, WD40 repeats	Back alignment and domain information

>gnl\|CDD\|201208 pfam00400, WD40, WD domain, G-beta repeat	Back alignment and domain information

>gnl\|CDD\|201208 pfam00400, WD40, WD domain, G-beta repeat	Back alignment and domain information

>gnl\|CDD\|197651 smart00320, WD40, WD40 repeats	Back alignment and domain information

>gnl\|CDD\|201208 pfam00400, WD40, WD domain, G-beta repeat	Back alignment and domain information

>gnl\|CDD\|201208 pfam00400, WD40, WD domain, G-beta repeat	Back alignment and domain information

>gnl\|CDD\|197651 smart00320, WD40, WD40 repeats	Back alignment and domain information

>gnl\|CDD\|197651 smart00320, WD40, WD40 repeats	Back alignment and domain information

>gnl\|CDD\|201208 pfam00400, WD40, WD domain, G-beta repeat	Back alignment and domain information

>gnl\|CDD\|197651 smart00320, WD40, WD40 repeats	Back alignment and domain information

>gnl\|CDD\|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1208
KOG0292		1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
PF06957		422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	100.0
KOG0276		794	consensus Vesicle coat complex COPI, beta' subunit	100.0
PF04053		443	Coatomer_WDAD: Coatomer WD associated region ; Int	100.0
KOG0271		480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0318		603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319		775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291		893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271		480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0319		775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306		888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318		603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0292		1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0291		893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1538		1081	consensus Uncharacterized conserved protein WDR10,	100.0
KOG0272		459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0276		794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0286		343	consensus G-protein beta subunit [General function	100.0
KOG0272		459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0306		888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279		315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279		315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286		343	consensus G-protein beta subunit [General function	100.0
KOG0295		406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273		524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG1524		737	consensus WD40 repeat-containing protein CHE-2 [Ge	100.0
KOG0263		707	consensus Transcription initiation factor TFIID, s	100.0
KOG0285		460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0273		524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0645		312	consensus WD40 repeat protein [General function pr	100.0
KOG0284		464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0315		311	consensus G-protein beta subunit-like protein (con	100.0
KOG1408		1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0296		399	consensus Angio-associated migratory cell protein	100.0
cd00200		289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG2041		1189	consensus WD40 repeat protein [General function pr	100.0
KOG0285		460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265		338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0645		312	consensus WD40 repeat protein [General function pr	100.0
KOG0266		456	consensus WD40 repeat-containing protein [General	100.0
KOG0316		307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0315		311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263		707	consensus Transcription initiation factor TFIID, s	100.0
KOG1539		910	consensus WD repeat protein [General function pred	100.0
KOG0284		464	consensus Polyadenylation factor I complex, subuni	100.0
KOG2048		691	consensus WD40 repeat protein [General function pr	99.98
KOG0296		399	consensus Angio-associated migratory cell protein	99.98
KOG0282		503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0295		406	consensus WD40 repeat-containing protein [Function	99.97
KOG2106		626	consensus Uncharacterized conserved protein, conta	99.97
KOG1539		910	consensus WD repeat protein [General function pred	99.97
KOG0275		508	consensus Conserved WD40 repeat-containing protein	99.97
KOG1063		764	consensus RNA polymerase II elongator complex, sub	99.97
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0265		338	consensus U5 snRNP-specific protein-like factor an	99.97
PLN00181		793	protein SPA1-RELATED; Provisional	99.97
KOG1408		1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0293		519	consensus WD40 repeat-containing protein [Function	99.97
cd00200		289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0266		456	consensus WD40 repeat-containing protein [General	99.97
KOG2106		626	consensus Uncharacterized conserved protein, conta	99.97
KOG0313		423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG2041		1189	consensus WD40 repeat protein [General function pr	99.96
KOG0316		307	consensus Conserved WD40 repeat-containing protein	99.96
KOG1407		313	consensus WD40 repeat protein [Function unknown]	99.96
KOG2048		691	consensus WD40 repeat protein [General function pr	99.96
PLN00181		793	protein SPA1-RELATED; Provisional	99.96
KOG1063		764	consensus RNA polymerase II elongator complex, sub	99.96
KOG0643		327	consensus Translation initiation factor 3, subunit	99.96
KOG0282		503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0278		334	consensus Serine/threonine kinase receptor-associa	99.96
KOG1538		1081	consensus Uncharacterized conserved protein WDR10,	99.96
KOG1274		933	consensus WD40 repeat protein [General function pr	99.95
KOG0643		327	consensus Translation initiation factor 3, subunit	99.95
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG1407		313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0310		487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0293		519	consensus WD40 repeat-containing protein [Function	99.95
KOG1446		311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0308		735	consensus Conserved WD40 repeat-containing protein	99.95
PTZ00421		493	coronin; Provisional	99.95
KOG0278		334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0973		942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0275		508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0288		459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0283		712	consensus WD40 repeat-containing protein [Function	99.94
KOG0300		481	consensus WD40 repeat-containing protein [Function	99.94
KOG0299		479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0772		641	consensus Uncharacterized conserved protein, conta	99.94
KOG0313		423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0283		712	consensus WD40 repeat-containing protein [Function	99.94
PTZ00420		568	coronin; Provisional	99.94
KOG0308		735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0301		745	consensus Phospholipase A2-activating protein (con	99.94
KOG0289		506	consensus mRNA splicing factor [General function p	99.94
PTZ00421		493	coronin; Provisional	99.94
KOG0305		484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0294		362	consensus WD40 repeat-containing protein [Function	99.94
KOG0647		347	consensus mRNA export protein (contains WD40 repea	99.94
KOG1446		311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0640		430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0640		430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0277		311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0289		506	consensus mRNA splicing factor [General function p	99.93
KOG0641		350	consensus WD40 repeat protein [General function pr	99.93
KOG0277		311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0310		487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0300		481	consensus WD40 repeat-containing protein [Function	99.93
PTZ00420		568	coronin; Provisional	99.93
KOG0268		433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0299		479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0973		942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0288		459	consensus WD40 repeat protein TipD [General functi	99.93
KOG0305		484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG1036		323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG0772		641	consensus Uncharacterized conserved protein, conta	99.92
KOG2096		420	consensus WD40 repeat protein [General function pr	99.92
KOG0294		362	consensus WD40 repeat-containing protein [Function	99.92
KOG1332		299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG1332		299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0264		422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG2096		420	consensus WD40 repeat protein [General function pr	99.9
TIGR03866		300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0641		350	consensus WD40 repeat protein [General function pr	99.9
KOG0301		745	consensus Phospholipase A2-activating protein (con	99.9
KOG1445		1012	consensus Tumor-specific antigen (contains WD repe	99.9
KOG0639		705	consensus Transducin-like enhancer of split protei	99.9
KOG3617		1416	consensus WD40 and TPR repeat-containing protein [	99.89
KOG0268		433	consensus Sof1-like rRNA processing protein (conta	99.89
KOG2055		514	consensus WD40 repeat protein [General function pr	99.89
KOG4283		397	consensus Transcription-coupled repair protein CSA	99.89
KOG0647		347	consensus mRNA export protein (contains WD40 repea	99.89
KOG0646		476	consensus WD40 repeat protein [General function pr	99.89
KOG2055		514	consensus WD40 repeat protein [General function pr	99.89
KOG1963		792	consensus WD40 repeat protein [General function pr	99.88
KOG0267		825	consensus Microtubule severing protein katanin p80	99.88
KOG1524		737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.88
KOG0267		825	consensus Microtubule severing protein katanin p80	99.88
KOG0269		839	consensus WD40 repeat-containing protein [Function	99.88
KOG0264		422	consensus Nucleosome remodeling factor, subunit CA	99.87
KOG0650		733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG0646		476	consensus WD40 repeat protein [General function pr	99.87
KOG1036		323	consensus Mitotic spindle checkpoint protein BUB3,	99.87
COG2319		466	FOG: WD40 repeat [General function prediction only	99.87
TIGR03866		300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG1273		405	consensus WD40 repeat protein [General function pr	99.86
KOG1273		405	consensus WD40 repeat protein [General function pr	99.86
KOG0321		720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG0269		839	consensus WD40 repeat-containing protein [Function	99.86
KOG4328		498	consensus WD40 protein [Function unknown]	99.86
KOG2445		361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG0639		705	consensus Transducin-like enhancer of split protei	99.85
KOG1274		933	consensus WD40 repeat protein [General function pr	99.84
KOG0650		733	consensus WD40 repeat nucleolar protein Bop1, invo	99.84
KOG2445		361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG1963		792	consensus WD40 repeat protein [General function pr	99.83
COG2319		466	FOG: WD40 repeat [General function prediction only	99.83
KOG1445		1012	consensus Tumor-specific antigen (contains WD repe	99.83
KOG0302		440	consensus Ribosome Assembly protein [General funct	99.83
KOG4328		498	consensus WD40 protein [Function unknown]	99.83
KOG0302		440	consensus Ribosome Assembly protein [General funct	99.82
KOG1034		385	consensus Transcriptional repressor EED/ESC/FIE, r	99.82
KOG0270		463	consensus WD40 repeat-containing protein [Function	99.82
KOG1009		434	consensus Chromatin assembly complex 1 subunit B/C	99.81
KOG2919		406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG4378		673	consensus Nuclear protein COP1 [Signal transductio	99.8
KOG0307		1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG4378		673	consensus Nuclear protein COP1 [Signal transductio	99.79
KOG0321		720	consensus WD40 repeat-containing protein L2DTL [Fu	99.79
KOG1034		385	consensus Transcriptional repressor EED/ESC/FIE, r	99.78
KOG0644		1113	consensus Uncharacterized conserved protein, conta	99.78
KOG1009		434	consensus Chromatin assembly complex 1 subunit B/C	99.78
KOG4283		397	consensus Transcription-coupled repair protein CSA	99.78
KOG0642		577	consensus Cell-cycle nuclear protein, contains WD-	99.77
KOG0307		1049	consensus Vesicle coat complex COPII, subunit SEC3	99.77
KOG0270		463	consensus WD40 repeat-containing protein [Function	99.75
KOG1912		1062	consensus WD40 repeat protein [General function pr	99.74
KOG2919		406	consensus Guanine nucleotide-binding protein [Gene	99.74
KOG3616		1636	consensus Selective LIM binding factor [Transcript	99.74
KOG4497		447	consensus Uncharacterized conserved protein WDR8,	99.74
PF04762		928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.74
KOG0322		323	consensus G-protein beta subunit-like protein GNB1	99.72
KOG0303		472	consensus Actin-binding protein Coronin, contains	99.72
KOG1007		370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG1007		370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG4227		609	consensus WD40 repeat protein [General function pr	99.71
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	99.71
KOG0290		364	consensus Conserved WD40 repeat-containing protein	99.7
KOG4497		447	consensus Uncharacterized conserved protein WDR8,	99.7
KOG0642		577	consensus Cell-cycle nuclear protein, contains WD-	99.7
KOG1188		376	consensus WD40 repeat protein [General function pr	99.69
KOG0644		1113	consensus Uncharacterized conserved protein, conta	99.69
KOG0649		325	consensus WD40 repeat protein [General function pr	99.69
KOG1188		376	consensus WD40 repeat protein [General function pr	99.67
KOG4227		609	consensus WD40 repeat protein [General function pr	99.67
PRK11028		330	6-phosphogluconolactonase; Provisional	99.66
KOG0649		325	consensus WD40 repeat protein [General function pr	99.66
KOG0303		472	consensus Actin-binding protein Coronin, contains	99.66
KOG1587		555	consensus Cytoplasmic dynein intermediate chain [C	99.65
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	99.65
KOG1523		361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG1587		555	consensus Cytoplasmic dynein intermediate chain [C	99.64
KOG2110		391	consensus Uncharacterized conserved protein, conta	99.63
PRK01742		429	tolB translocation protein TolB; Provisional	99.63
KOG3617		1416	consensus WD40 and TPR repeat-containing protein [	99.63
PRK11028		330	6-phosphogluconolactonase; Provisional	99.63
KOG1334		559	consensus WD40 repeat protein [General function pr	99.62
KOG0322		323	consensus G-protein beta subunit-like protein GNB1	99.61
KOG1523		361	consensus Actin-related protein Arp2/3 complex, su	99.61
KOG2139		445	consensus WD40 repeat protein [General function pr	99.6
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	99.58
KOG1912		1062	consensus WD40 repeat protein [General function pr	99.58
KOG1272		545	consensus WD40-repeat-containing subunit of the 18	99.58
PF02239		369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
PRK01742		429	tolB translocation protein TolB; Provisional	99.57
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	99.56
KOG0290		364	consensus Conserved WD40 repeat-containing protein	99.56
KOG0771		398	consensus Prolactin regulatory element-binding pro	99.56
KOG0771		398	consensus Prolactin regulatory element-binding pro	99.55
KOG2110		391	consensus Uncharacterized conserved protein, conta	99.55
KOG1310		758	consensus WD40 repeat protein [General function pr	99.54
PRK03629		429	tolB translocation protein TolB; Provisional	99.53
KOG1310		758	consensus WD40 repeat protein [General function pr	99.52
KOG1920		1265	consensus IkappaB kinase complex, IKAP component [	99.52
KOG2139		445	consensus WD40 repeat protein [General function pr	99.51
COG5354		561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.51
KOG2111		346	consensus Uncharacterized conserved protein, conta	99.5
PRK05137		435	tolB translocation protein TolB; Provisional	99.5
KOG2111		346	consensus Uncharacterized conserved protein, conta	99.5
KOG1272		545	consensus WD40-repeat-containing subunit of the 18	99.5
PRK04922		433	tolB translocation protein TolB; Provisional	99.5
PF02239		369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.49
PRK03629		429	tolB translocation protein TolB; Provisional	99.48
COG4946		668	Uncharacterized protein related to the periplasmic	99.48
PRK02889		427	tolB translocation protein TolB; Provisional	99.48
KOG2315		566	consensus Predicted translation initiation factor	99.45
KOG1334		559	consensus WD40 repeat protein [General function pr	99.44
KOG2315		566	consensus Predicted translation initiation factor	99.44
PRK04922		433	tolB translocation protein TolB; Provisional	99.44
PRK05137		435	tolB translocation protein TolB; Provisional	99.43
KOG0974		967	consensus WD-repeat protein WDR6, WD repeat superf	99.42
COG5354		561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.42
PRK02889		427	tolB translocation protein TolB; Provisional	99.42
KOG2314		698	consensus Translation initiation factor 3, subunit	99.42
KOG2314		698	consensus Translation initiation factor 3, subunit	99.41
KOG3881		412	consensus Uncharacterized conserved protein [Funct	99.4
KOG1354		433	consensus Serine/threonine protein phosphatase 2A,	99.4
KOG2321		703	consensus WD40 repeat protein [General function pr	99.39
PF04762		928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.38
KOG1409		404	consensus Uncharacterized conserved protein, conta	99.37
PF08662		194	eIF2A: Eukaryotic translation initiation factor eI	99.36
KOG2394		636	consensus WD40 protein DMR-N9 [General function pr	99.35
KOG3881		412	consensus Uncharacterized conserved protein [Funct	99.34
KOG2321		703	consensus WD40 repeat protein [General function pr	99.33
KOG2394		636	consensus WD40 protein DMR-N9 [General function pr	99.33
PF10282		345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.33
PF10282		345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.31
KOG0974		967	consensus WD-repeat protein WDR6, WD repeat superf	99.31
TIGR02800		417	propeller_TolB tol-pal system beta propeller repea	99.31
PRK00178		430	tolB translocation protein TolB; Provisional	99.29
PRK04792		448	tolB translocation protein TolB; Provisional	99.28
KOG2114		933	consensus Vacuolar assembly/sorting protein PEP5/V	99.28
PRK00178		430	tolB translocation protein TolB; Provisional	99.27
KOG1354		433	consensus Serine/threonine protein phosphatase 2A,	99.26
COG4946		668	Uncharacterized protein related to the periplasmic	99.26
TIGR02800		417	propeller_TolB tol-pal system beta propeller repea	99.26
TIGR02658		352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.23
PF08662		194	eIF2A: Eukaryotic translation initiation factor eI	99.23
PRK01029		428	tolB translocation protein TolB; Provisional	99.22
COG2706		346	3-carboxymuconate cyclase [Carbohydrate transport	99.22
PRK01029		428	tolB translocation protein TolB; Provisional	99.2
PRK04792		448	tolB translocation protein TolB; Provisional	99.2
COG2706		346	3-carboxymuconate cyclase [Carbohydrate transport	99.18
TIGR02658		352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.1
KOG1409		404	consensus Uncharacterized conserved protein, conta	99.1
KOG4547		541	consensus WD40 repeat-containing protein [General	99.1
KOG1064		2439	consensus RAVE (regulator of V-ATPase assembly) co	99.07
KOG0280		339	consensus Uncharacterized conserved protein [Amino	99.06
KOG4547		541	consensus WD40 repeat-containing protein [General	99.06
KOG1920		1265	consensus IkappaB kinase complex, IKAP component [	99.05
KOG1064		2439	consensus RAVE (regulator of V-ATPase assembly) co	99.04
KOG3616		1636	consensus Selective LIM binding factor [Transcript	99.0
PLN02919		1057	haloacid dehalogenase-like hydrolase family protei	98.97
KOG0280		339	consensus Uncharacterized conserved protein [Amino	98.97
TIGR03300		377	assembly_YfgL outer membrane assembly lipoprotein	98.93
PF04053		443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.9
PLN02919		1057	haloacid dehalogenase-like hydrolase family protei	98.86
KOG4190		1034	consensus Uncharacterized conserved protein [Funct	98.85
KOG4190		1034	consensus Uncharacterized conserved protein [Funct	98.85
KOG0309		1081	consensus Conserved WD40 repeat-containing protein	98.85
KOG4532		344	consensus WD40-like repeat containing protein [Gen	98.84
KOG2114		933	consensus Vacuolar assembly/sorting protein PEP5/V	98.84
KOG2066		846	consensus Vacuolar assembly/sorting protein VPS41	98.82
PRK04043		419	tolB translocation protein TolB; Provisional	98.81
PF15492		282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.81
KOG4532		344	consensus WD40-like repeat containing protein [Gen	98.81
PRK04043		419	tolB translocation protein TolB; Provisional	98.8
KOG0309		1081	consensus Conserved WD40 repeat-containing protein	98.77
COG5170		460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.75
KOG3914		390	consensus WD repeat protein WDR4 [Function unknown	98.72
PF08450		246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.7
PF08450		246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.67
TIGR03300		377	assembly_YfgL outer membrane assembly lipoprotein	98.65
KOG0882		558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.65
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.63
PF07433		305	DUF1513: Protein of unknown function (DUF1513); In	98.58
PF13360		238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.57
KOG3914		390	consensus WD repeat protein WDR4 [Function unknown	98.55
PF07433		305	DUF1513: Protein of unknown function (DUF1513); In	98.55
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.53
KOG2066		846	consensus Vacuolar assembly/sorting protein VPS41	98.42
PRK11138		394	outer membrane biogenesis protein BamB; Provisiona	98.42
PF11768		545	DUF3312: Protein of unknown function (DUF3312); In	98.42
PF15492		282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.4
KOG4649		354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.39
KOG0882		558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.38
COG5170		460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.36
KOG4714		319	consensus Nucleoporin [Nuclear structure]	98.31
PRK02888		635	nitrous-oxide reductase; Validated	98.3
KOG4714		319	consensus Nucleoporin [Nuclear structure]	98.28
PRK11138		394	outer membrane biogenesis protein BamB; Provisiona	98.28
KOG1897		1096	consensus Damage-specific DNA binding complex, sub	98.27
KOG2695		425	consensus WD40 repeat protein [General function pr	98.26
KOG1645		463	consensus RING-finger-containing E3 ubiquitin liga	98.25
KOG1275		1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.24
PF00400		39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.24
PF13360		238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.23
KOG1275		1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.22
PF00930		353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.21
PF00930		353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.21
PF14583		386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.19
KOG1645		463	consensus RING-finger-containing E3 ubiquitin liga	98.16
PF00400		39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.15
KOG3621		726	consensus WD40 repeat-containing protein [General	98.14
PF14583		386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.14
KOG1897		1096	consensus Damage-specific DNA binding complex, sub	98.14
KOG4649		354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.14
KOG2695		425	consensus WD40 repeat protein [General function pr	98.12
PF08596		395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.0
KOG3621		726	consensus WD40 repeat-containing protein [General	98.0
COG5290		1243	IkappaB kinase complex, IKAP component [Transcript	97.95
PF06433		342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.94
cd00216		488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.92
PF04841		410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.9
PF00780		275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.82
PF06433		342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.8
cd00216		488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.76
PF11768		545	DUF3312: Protein of unknown function (DUF3312); In	97.76
COG3391		381	Uncharacterized conserved protein [Function unknow	97.75
COG0823		425	TolB Periplasmic component of the Tol biopolymer t	97.72
PRK02888		635	nitrous-oxide reductase; Validated	97.72
PF06977		248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.7
KOG2280		829	consensus Vacuolar assembly/sorting protein VPS16	97.67
PF04841		410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.66
PF08596		395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.6
COG0823		425	TolB Periplasmic component of the Tol biopolymer t	97.58
PF00780		275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.55
PF06977		248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.52
PF02897		414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.52
PF03178		321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.46
TIGR03075		527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.41
PF02897		414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.39
KOG1008		783	consensus Uncharacterized conserved protein, conta	97.39
COG3391		381	Uncharacterized conserved protein [Function unknow	97.37
PF15390		671	DUF4613: Domain of unknown function (DUF4613)	97.32
KOG1008		783	consensus Uncharacterized conserved protein, conta	97.18
TIGR03075		527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.17
PRK13616		591	lipoprotein LpqB; Provisional	97.15
PRK10115		686	protease 2; Provisional	97.05
PF14655		415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.04
PF08553		794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.02
KOG4640		665	consensus Anaphase-promoting complex (APC), subuni	96.96
PF03178		321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.94
COG3386		307	Gluconolactonase [Carbohydrate transport and metab	96.92
COG3204		316	Uncharacterized protein conserved in bacteria [Fun	96.9
COG3490		366	Uncharacterized protein conserved in bacteria [Fun	96.75
COG3386		307	Gluconolactonase [Carbohydrate transport and metab	96.74
COG3490		366	Uncharacterized protein conserved in bacteria [Fun	96.7
KOG4640		665	consensus Anaphase-promoting complex (APC), subuni	96.7
PRK13616		591	lipoprotein LpqB; Provisional	96.7
PF15390		671	DUF4613: Domain of unknown function (DUF4613)	96.68
smart00320		40	WD40 WD40 repeats. Note that these repeats are per	96.67
PF14655		415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.66
PF05694		461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.65
KOG2079		1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.61
PF14783		111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.5
PRK10115		686	protease 2; Provisional	96.46
PF14870		302	PSII_BNR: Photosynthesis system II assembly factor	96.45
KOG0985		1666	consensus Vesicle coat protein clathrin, heavy cha	96.43
PF10647		253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.42
smart00320		40	WD40 WD40 repeats. Note that these repeats are per	96.35
PF12234		631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.32
PF08553		794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.3
PF14783		111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.29
COG3204		316	Uncharacterized protein conserved in bacteria [Fun	96.27
KOG2079		1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.22
TIGR03118		336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.11
COG5290		1243	IkappaB kinase complex, IKAP component [Transcript	96.06
PHA02713		557	hypothetical protein; Provisional	96.06
TIGR03074		764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.04
PRK13684		334	Ycf48-like protein; Provisional	96.04
COG5276		370	Uncharacterized conserved protein [Function unknow	96.0
TIGR03118		336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.98
KOG2395		644	consensus Protein involved in vacuole import and d	95.95
PF14870		302	PSII_BNR: Photosynthesis system II assembly factor	95.91
PF07995		331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.87
KOG1898		1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.64
KOG4441		571	consensus Proteins containing BTB/POZ and Kelch do	95.51
PLN03081		697	pentatricopeptide (PPR) repeat-containing protein;	95.4
KOG2395		644	consensus Protein involved in vacuole import and d	95.35
PLN03218		1060	maturation of RBCL 1; Provisional	95.33
PF05096		264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.2
KOG0985		1666	consensus Vesicle coat protein clathrin, heavy cha	95.19
PLN03218		1060	maturation of RBCL 1; Provisional	95.13
PF10647		253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.98
smart00036		302	CNH Domain found in NIK1-like kinases, mouse citro	94.97
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	94.89
KOG2247		615	consensus WD40 repeat-containing protein [General	94.84
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	94.84
PRK11788		389	tetratricopeptide repeat protein; Provisional	94.73
KOG2444		238	consensus WD40 repeat protein [General function pr	94.62
KOG4441		571	consensus Proteins containing BTB/POZ and Kelch do	94.56
PLN03081		697	pentatricopeptide (PPR) repeat-containing protein;	94.53
PF11725		1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	94.53
PF07995		331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.51
PF12894		47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.51
PF05694		461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.48
TIGR03074		764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.33
PF05096		264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.29
PHA02713		557	hypothetical protein; Provisional	94.2
PRK13684		334	Ycf48-like protein; Provisional	94.15
PRK11788		389	tetratricopeptide repeat protein; Provisional	94.13
KOG1898		1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.11
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	94.06
PF12894		47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.03
KOG2444		238	consensus WD40 repeat protein [General function pr	93.98
PHA03098		534	kelch-like protein; Provisional	93.94
PF13429		280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	93.71
KOG3630		1405	consensus Nuclear pore complex, Nup214/CAN compone	93.7
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	93.67
PF07569		219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.6
PLN03077		857	Protein ECB2; Provisional	93.58
KOG4499		310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.57
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	93.44
PF14761		215	HPS3_N: Hermansky-Pudlak syndrome 3	93.36
KOG3630		1405	consensus Nuclear pore complex, Nup214/CAN compone	93.23
COG3063		250	PilF Tfp pilus assembly protein PilF [Cell motilit	93.13
PF14727		418	PHTB1_N: PTHB1 N-terminus	93.09
PLN03077		857	Protein ECB2; Provisional	93.02
PHA03098		534	kelch-like protein; Provisional	92.97
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	92.77
KOG2280		829	consensus Vacuolar assembly/sorting protein VPS16	92.42
PF12234		631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.39
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	92.08
PF04840		319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	91.97
KOG4499		310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.97
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	91.84
TIGR02604		367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.79
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	91.79
PRK12370		553	invasion protein regulator; Provisional	91.75
COG3292		671	Predicted periplasmic ligand-binding sensor domain	91.75
KOG1916		1283	consensus Nuclear protein, contains WD40 repeats [	91.64
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	91.54
KOG2377		657	consensus Uncharacterized conserved protein [Funct	91.48
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	91.38
COG5010		257	TadD Flp pilus assembly protein TadD, contains TPR	90.82
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	90.4
PF13429		280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	90.16
PF14761		215	HPS3_N: Hermansky-Pudlak syndrome 3	90.01
TIGR02604		367	Piru_Ver_Nterm putative membrane-bound dehydrogena	89.98
PHA02790		480	Kelch-like protein; Provisional	89.84
PRK15359		144	type III secretion system chaperone protein SscB;	89.81
COG5276		370	Uncharacterized conserved protein [Function unknow	89.73
PRK10370		198	formate-dependent nitrite reductase complex subuni	89.71
KOG2377		657	consensus Uncharacterized conserved protein [Funct	89.62
PF10395		670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	89.57
PHA02790		480	Kelch-like protein; Provisional	88.74
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	88.39
PF08728		717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.37
COG5167		776	VID27 Protein involved in vacuole import and degra	88.28
PF14853		53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	87.84
PF10602		177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.75
PRK12370		553	invasion protein regulator; Provisional	87.61
KOG4460		741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.6
KOG1983		993	consensus Tomosyn and related SNARE-interacting pr	87.59
COG4257		353	Vgb Streptogramin lyase [Defense mechanisms]	87.53
PF08728		717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.34
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	87.0
PF11725		1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	86.98
COG4590		733	ABC-type uncharacterized transport system, permeas	86.81
PF14781		136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	86.59
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	86.43
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	86.27
PRK13614		573	lipoprotein LpqB; Provisional	85.99
PF10313		43	DUF2415: Uncharacterised protein domain (DUF2415);	85.8
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	85.77
KOG1916		1283	consensus Nuclear protein, contains WD40 repeats [	85.55
COG4257		353	Vgb Streptogramin lyase [Defense mechanisms]	85.39

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=6.1e-251  Score=2087.12  Aligned_cols=1184  Identities=67%  Similarity=1.105  Sum_probs=1112.4

Q ss_pred             CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961            1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY   80 (1208)
Q Consensus         1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~   80 (1208)
                      |+++|+..+++|++++|||..+|++++.++|.|++||++++.++.+|.+|++||++++|||++++|+|||+|..|+||++
T Consensus         1 mltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen    1 MLTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             CcchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEE
Q 000961           81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR  160 (1208)
Q Consensus        81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~  160 (1208)
                      ++.+|++++.||.++|+.+.||+..+||+|+|+|++|+||||++++++.+++||+++|+|.+|+|..+.++++|.|.+||
T Consensus        81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR  160 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR  160 (1202)
T ss_pred             ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCccccccCCC--cceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961          161 VWDIGALRKKTVSPAD--DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA  238 (1208)
Q Consensus       161 vwdl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~  238 (1208)
                      |||+++.+++...|++  ..+...+.+..++|+.|.+++++++||+++|++++|+|.-++|++|++|+.|++|+++..+.
T Consensus       161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence            9999999999888772  34444556678999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEee
Q 000961          239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL  318 (1208)
Q Consensus       239 ~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l  318 (1208)
                      |++.++++|.++|+++.|||..++|++.|+|++|+|||+.+++.+++|+..++++|.++.+|..+++|+|+|+|++||++
T Consensus       241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl  320 (1202)
T KOG0292|consen  241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL  320 (1202)
T ss_pred             eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961          319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK  398 (1208)
Q Consensus       319 ~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~  398 (1208)
                      ++++|++.++++.|+|++++.|+.+|+.+.+...+.+++..+.  ++.++++++|+|..+.+++++..+++.+.++.++.
T Consensus       321 eRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~--~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk  398 (1202)
T KOG0292|consen  321 ERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGT--LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPK  398 (1202)
T ss_pred             cccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCc--ccCCcceeeeccccCeEEEEeccCCCeEEEEEecC
Confidence            9999999999999999999999999999999999999998775  37799999999999999999988999999999998


Q ss_pred             CCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCceeeeecCCcceEEEEEeCCccEEEEeCCeEEEEE
Q 000961          399 DSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFD  478 (1208)
Q Consensus       399 ~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~Las~dg~v~lwd  478 (1208)
                      ...+... .....+++...+.|..+++|++...++.++.+.++.++..+++..+..+..|++..+|.+|+..+..|.+||
T Consensus       399 ~~~~~~~-~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~~~~~v~lfd  477 (1202)
T KOG0292|consen  399 DSDGVSD-GKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLRSPDSVTLFD  477 (1202)
T ss_pred             cccccCC-chhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEEcCCeEEEEE
Confidence            8665543 245566778889999999999999999999999999999999998888999999999999999999999999


Q ss_pred             cCCCeEEEEEeCCCeeEEEECCCCCEEEEEeCCeEEEEecCccceeeeecceeeeeeEEecCCeEEEecCCeeeeEecCC
Q 000961          479 LQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNG  558 (1208)
Q Consensus       479 l~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~~~i~i~~~~~~~~~~~~e~~~iks~~wd~~~~~iy~t~~~i~y~l~~g  558 (1208)
                      +++++.+.++..+.|++|.||+|++++|..++|.|+|++++++.++++||+++|||++||++++|||+|+|||||++.||
T Consensus       478 vQq~~~~~si~~s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihEtiriksgawde~gVfiYtT~nHikYal~~G  557 (1202)
T KOG0292|consen  478 VQQKKKVGSIKVSKVKYVVWSNDMSRVALLSKHTITIADKKLELLCSIHETIRIKSGAWDEDGVFIYTTLNHIKYALENG  557 (1202)
T ss_pred             eecceEEEEEecCceeEEEEcCccchhhhcccceEEEEecchhheecchheeEeeeceeccCceEEEEehhhhhhhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEeccccEEEEEEeCCEEEEEecCCceEEEEcChhh-----------HHHHHhhcccccccchHHHHHHHhCCChh
Q 000961          559 DSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATE-----------YDHVMSMIRNSQLCGQAMIAYLQQKGFPE  627 (1208)
Q Consensus       559 ~~g~i~~l~~~~~l~~~~~~~l~~l~r~~~~~~~~ld~~e-----------~~~~l~~i~~~~~~~~~i~~yl~~~g~~e  627 (1208)
                      |.|+|++++.++|+++++++.+||++|+++++.+.||++|           |++++++|++++++||+|++||+|+||||
T Consensus       558 D~GIikTLd~~iyitkv~gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI~ns~LvGqaiIaYLqKkgype  637 (1202)
T KOG0292|consen  558 DSGIIKTLDKPIYITKVKGNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLIKNSNLVGQAIIAYLQKKGYPE  637 (1202)
T ss_pred             CcceEEecccceEEEEeeCCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHHHhcCcccHHHHHHHHhcCCcc
Confidence            9999999999999999999999999999999999999999           78999999999999999999999999999


Q ss_pred             hhhccccCcchhhHHHHhcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHH
Q 000961          628 VALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKL  707 (1208)
Q Consensus       628 ~Al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl  707 (1208)
                      +||+|++|+++||+||++|||+++|++.|++++++.+|++||+.||.|||+++||+|||++++|++|+|||+++||.+||
T Consensus       638 iAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL  717 (1202)
T KOG0292|consen  638 IALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKL  717 (1202)
T ss_pred             eeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCchhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCCCCCCCCCC-CCCCcCC
Q 000961          708 SKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEG-KAPSLLM  786 (1208)
Q Consensus       708 ~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~~~~~~~~-~~~~~~~  786 (1208)
                      +||++|++.|+|....+++++|+||++++++++.++|+.++||.+|++||+.+.|+++.++++.++..+|+. +++.+++
T Consensus       718 ~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G~~~~ae~l~ee~~~~~~~lP~~~~~a~ll~  797 (1202)
T KOG0292|consen  718 SKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAHGLEDQAEKLGEELEKQVPSLPEVDPNASLLQ  797 (1202)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcCcHHHHHHHHHhhccccCCCCCCCCcccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999877779987 7888999


Q ss_pred             CCCcccCCCCCCcccccccccccccccCCCCCcccccccccCCCcc---ccccccccCCCCCcchhhcccCccccccccc
Q 000961          787 PPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGDWGE---ELDMVDVDGLQNGDVAAILEDGEVAEEGEEE  863 (1208)
Q Consensus       787 ~~~~~~~~~~wp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  863 (1208)
                      ||+|++...|||++.+++++|++++.+.+...  .++.+.++.|++   +.+..+.  ++...     .++..++.++||
T Consensus       798 pP~p~~~l~nwPLl~~s~~~fe~~~~~~~~~~--av~~~~e~~~g~e~~~~e~~l~--ed~~~-----~~d~~g~~~~dE  868 (1202)
T KOG0292|consen  798 PPVPIMPLENWPLLSVSKGTFEGALLSRSSSL--AVDRDDEGDWGEEGWDVELMLG--EDGIL-----FNDGAGEVGEDE  868 (1202)
T ss_pred             CCCccccccCCchhhhhhhhhhHhhhhhcccC--cccccccccccccchhhhhccc--ccccc-----ccccccccCccc
Confidence            99999888899999999999999998443322  233222222332   1111111  11111     111122234677


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCchhHHHHhcchHHHHHHcCCHHHHHHHHHhhcCcccccccHHH
Q 000961          864 EGGWDLEDLELPPEAETPKAPVNARSAVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSM  943 (1208)
Q Consensus       864 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~f~~a~~~l~~~~~~~~~~p~~~~  943 (1208)
                      ++|||++|++++++++.++   ..+.+.|++|..|.+.+ .|.+||++||||||||+|++||++|++|+|++||.|||.+
T Consensus       869 ~~gWdv~d~~l~pe~~~~~---~~~~~~~~~p~~~~~~~-~W~~nS~L~adhvaAGsf~tA~~lL~dqvgvv~f~p~Kt~  944 (1202)
T KOG0292|consen  869 GGGWDVGDLDLPPEEDTPK---GADDGEFVVPAQGMSVS-IWSNNSPLAADHVAAGSFETAMRLLHDQVGVVNFGPLKTH  944 (1202)
T ss_pred             ccCcCcccccCCccccccc---cccccceecCCCCCcch-hccccCcchhhhhhcCchHHHHHHHHhhhcceecccHHhh
Confidence            8899999888887765554   33457789999997777 9999999999999999999999999999999999999999


Q ss_pred             HHHHHhcceeeeccCCCCCChhhhhhcCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHc
Q 000961          944 FLDLHSGSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTI 1023 (1208)
Q Consensus       944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1023 (1208)
                      |+++|.+||+|+|+.|++| +.+++-|+|.|.+..+  .+|+++.++++|..+|++||++||.|||.+|+++||+||++|
T Consensus       945 fl~iy~~sR~~l~~~~~~~-~~~~~~R~~se~~~~~--~~P~v~~~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i 1021 (1202)
T KOG0292|consen  945 FLKIYAGSRTYLRATPCLP-VSLYPVRNWSETSSKQ--GLPAVGFKLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSI 1021 (1202)
T ss_pred             hhhhccccceeccCCCCcc-cccccccccccchhhc--cCCcccccHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhe
Confidence            9999999999999999999 7777788888887644  899999999999999999999999999999999999999999


Q ss_pred             ceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCc-hhhhHHHHHhcccCCChhhHHHHHHHHHHHHHHhhchH
Q 000961         1024 PLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDP-VRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLA 1102 (1208)
Q Consensus      1024 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~-~r~~el~~yft~~~l~~~h~~l~l~~a~~~~~k~~n~~ 1102 (1208)
                      |+++|++++|+++++++|+||||||+||+||++||+|+++. +|+||||||||||+|||.|++||||+||+++||+|||+
T Consensus      1022 ~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~k 1101 (1202)
T KOG0292|consen 1022 PLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLK 1101 (1202)
T ss_pred             eEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHH
Confidence            99999999999999999999999999999999999999998 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCchhHHHHHHHHHHHHhcCCCCceeecCCCCCCeeEeccccccccCCCccccCCCCCcccCCCCCC
Q 000961         1103 TAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEG 1182 (1208)
Q Consensus      1103 ~a~~~a~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~i~~~~~~~~c~~~~~~~~~~~~~ 1182 (1208)
                      ||++||+|||++.|. +++|+|||||+++||++|+|+++|+|||+|||+||++||+|||+|.|.++||||||+|++.++|
T Consensus      1102 tAs~fa~rLlel~~~-~~~A~q~rki~~a~eknp~Da~~l~yd~~n~f~iC~~t~~Piy~g~p~~~cp~cga~y~~~~~g 1180 (1202)
T KOG0292|consen 1102 TAAEFARRLLELAPS-PPVAEQARKIKQAAEKNPTDAYELNYDPHNPFVICGATYVPIYRGRPDVSCPYCGACFVPSSKG 1180 (1202)
T ss_pred             HHHHHHHHHHhhCCC-ChHHHHHHHHHHHhhcCcccccccCcccCCCeeEecccceeeecCCCCcCCCcccceeccccCC
Confidence            999999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCcccccccCCCCcCccccC
Q 000961         1183 QLCSVCDLAVVGVDASGLLCSP 1204 (1208)
Q Consensus      1183 ~~c~~~~~~~~g~~~~g~~~~~ 1204 (1208)
                      ++|+||.+++||++++||||++
T Consensus      1181 ~iCtvc~V~~ig~~~~Glris~ 1202 (1202)
T KOG0292|consen 1181 NICTVCDVGVIGADASGLRISA 1202 (1202)
T ss_pred             ceeeeeeeeeecCcccceeecC
Confidence            9999999999999999999975

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]	Back alignment and domain information

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]	Back alignment and domain information

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0286 consensus G-protein beta subunit [General function prediction only]	Back alignment and domain information

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG0286 consensus G-protein beta subunit [General function prediction only]	Back alignment and domain information

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]	Back alignment and domain information

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]	Back alignment and domain information

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0645 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]	Back alignment and domain information

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]	Back alignment and domain information

>KOG1408 consensus WD40 repeat protein [Function unknown]	Back alignment and domain information

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]	Back alignment and domain information

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Back alignment and domain information

>KOG2041 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]	Back alignment and domain information

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]	Back alignment and domain information

>KOG0645 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]	Back alignment and domain information

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG1539 consensus WD repeat protein [General function prediction only]	Back alignment and domain information

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]	Back alignment and domain information

>KOG2048 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]	Back alignment and domain information

>KOG0282 consensus mRNA splicing factor [Function unknown]	Back alignment and domain information

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]	Back alignment and domain information

>KOG1539 consensus WD repeat protein [General function prediction only]	Back alignment and domain information

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]	Back alignment and domain information

>PLN00181 protein SPA1-RELATED; Provisional	Back alignment and domain information

>KOG1408 consensus WD40 repeat protein [Function unknown]	Back alignment and domain information

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

Back alignment and domain information

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]	Back alignment and domain information

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]	Back alignment and domain information

>KOG2041 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG1407 consensus WD40 repeat protein [Function unknown]	Back alignment and domain information

>KOG2048 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PLN00181 protein SPA1-RELATED; Provisional	Back alignment and domain information

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]	Back alignment and domain information

>KOG0282 consensus mRNA splicing factor [Function unknown]	Back alignment and domain information

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]	Back alignment and domain information

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>KOG1274 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>KOG1407 consensus WD40 repeat protein [Function unknown]	Back alignment and domain information

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>PTZ00421 coronin; Provisional	Back alignment and domain information

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]	Back alignment and domain information

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]	Back alignment and domain information

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]	Back alignment and domain information

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>PTZ00420 coronin; Provisional	Back alignment and domain information

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]	Back alignment and domain information

>KOG0289 consensus mRNA splicing factor [General function prediction only]	Back alignment and domain information

>PTZ00421 coronin; Provisional	Back alignment and domain information

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0289 consensus mRNA splicing factor [General function prediction only]	Back alignment and domain information

>KOG0641 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>PTZ00420 coronin; Provisional	Back alignment and domain information

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]	Back alignment and domain information

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]	Back alignment and domain information

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]	Back alignment and domain information

>KOG2096 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]	Back alignment and domain information

>KOG2096 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein	Back alignment and domain information

>KOG0641 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]	Back alignment and domain information

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]	Back alignment and domain information

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG2055 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]	Back alignment and domain information

>KOG0646 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2055 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1963 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]	Back alignment and domain information

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0646 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG2319 FOG: WD40 repeat [General function prediction only]	Back alignment and domain information

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein	Back alignment and domain information

>KOG1273 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1273 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]	Back alignment and domain information

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG4328 consensus WD40 protein [Function unknown]	Back alignment and domain information

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1274 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1963 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>COG2319 FOG: WD40 repeat [General function prediction only]	Back alignment and domain information

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]	Back alignment and domain information

>KOG4328 consensus WD40 protein [Function unknown]	Back alignment and domain information

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]	Back alignment and domain information

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]	Back alignment and domain information

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]	Back alignment and domain information

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]	Back alignment and domain information

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]	Back alignment and domain information

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]	Back alignment and domain information

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]	Back alignment and domain information

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]	Back alignment and domain information

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG1912 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]	Back alignment and domain information

>KOG3616 consensus Selective LIM binding factor [Transcription]	Back alignment and domain information

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]	Back alignment and domain information

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []	Back alignment and domain information

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]	Back alignment and domain information

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]	Back alignment and domain information

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]	Back alignment and domain information

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]	Back alignment and domain information

>KOG4227 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]	Back alignment and domain information

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]	Back alignment and domain information

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1188 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]	Back alignment and domain information

>KOG0649 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1188 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG4227 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PRK11028 6-phosphogluconolactonase; Provisional	Back alignment and domain information

>KOG0649 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]	Back alignment and domain information

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]	Back alignment and domain information

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]	Back alignment and domain information

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>PRK01742 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>PRK11028 6-phosphogluconolactonase; Provisional	Back alignment and domain information

>KOG1334 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]	Back alignment and domain information

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]	Back alignment and domain information

>KOG2139 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG1912 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A	Back alignment and domain information

>PRK01742 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]	Back alignment and domain information

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG1310 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PRK03629 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG1310 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]	Back alignment and domain information

>KOG2139 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]	Back alignment and domain information

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>PRK05137 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]	Back alignment and domain information

>PRK04922 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A	Back alignment and domain information

>PRK03629 tolB translocation protein TolB; Provisional	Back alignment and domain information

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]	Back alignment and domain information

>PRK02889 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1334 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK04922 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK05137 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]	Back alignment and domain information

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]	Back alignment and domain information

>PRK02889 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>KOG2321 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []	Back alignment and domain information

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]	Back alignment and domain information

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins	Back alignment and domain information

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]	Back alignment and domain information

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2321 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]	Back alignment and domain information

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3	Back alignment and domain information

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3	Back alignment and domain information

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]	Back alignment and domain information

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB	Back alignment and domain information

>PRK00178 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK04792 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK00178 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]	Back alignment and domain information

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB	Back alignment and domain information

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain	Back alignment and domain information

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins	Back alignment and domain information

>PRK01029 tolB translocation protein TolB; Provisional	Back alignment and domain information

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK01029 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PRK04792 tolB translocation protein TolB; Provisional	Back alignment and domain information

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain	Back alignment and domain information

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]	Back alignment and domain information

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]	Back alignment and domain information

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]	Back alignment and domain information

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]	Back alignment and domain information

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]	Back alignment and domain information

>KOG3616 consensus Selective LIM binding factor [Transcription]	Back alignment and domain information

>PLN02919 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL	Back alignment and domain information

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PLN02919 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]	Back alignment and domain information

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK04043 tolB translocation protein TolB; Provisional	Back alignment and domain information

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal	Back alignment and domain information

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]	Back alignment and domain information

>PRK04043 tolB translocation protein TolB; Provisional	Back alignment and domain information

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]	Back alignment and domain information

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species	Back alignment and domain information

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species	Back alignment and domain information

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL	Back alignment and domain information

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function	Back alignment and domain information

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A	Back alignment and domain information

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]	Back alignment and domain information

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK11138 outer membrane biogenesis protein BamB; Provisional	Back alignment and domain information

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats	Back alignment and domain information

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal	Back alignment and domain information

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>KOG4714 consensus Nucleoporin [Nuclear structure]	Back alignment and domain information

>PRK02888 nitrous-oxide reductase; Validated	Back alignment and domain information

>KOG4714 consensus Nucleoporin [Nuclear structure]	Back alignment and domain information

>PRK11138 outer membrane biogenesis protein BamB; Provisional	Back alignment and domain information

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]	Back alignment and domain information

>KOG2695 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]	Back alignment and domain information

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide	Back alignment and domain information

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A	Back alignment and domain information

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]	Back alignment and domain information

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A	Back alignment and domain information

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide	Back alignment and domain information

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A	Back alignment and domain information

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]	Back alignment and domain information

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG2695 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals	Back alignment and domain information

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>COG5290 IkappaB kinase complex, IKAP component [Transcription]	Back alignment and domain information

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1	Back alignment and domain information

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases	Back alignment and domain information

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex	Back alignment and domain information

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase	Back alignment and domain information

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1	Back alignment and domain information

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases	Back alignment and domain information

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats	Back alignment and domain information

>COG3391 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK02888 nitrous-oxide reductase; Validated	Back alignment and domain information

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []	Back alignment and domain information

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex	Back alignment and domain information

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals	Back alignment and domain information

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	Back alignment and domain information

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase	Back alignment and domain information

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []	Back alignment and domain information

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit	Back alignment and domain information

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family	Back alignment and domain information

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>COG3391 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF15390 DUF4613: Domain of unknown function (DUF4613)	Back alignment and domain information

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]	Back alignment and domain information

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family	Back alignment and domain information

>PRK13616 lipoprotein LpqB; Provisional	Back alignment and domain information

>PRK10115 protease 2; Provisional	Back alignment and domain information

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus	Back alignment and domain information

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins	Back alignment and domain information

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit	Back alignment and domain information

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK13616 lipoprotein LpqB; Provisional	Back alignment and domain information

>PF15390 DUF4613: Domain of unknown function (DUF4613)	Back alignment and domain information

>smart00320 WD40 WD40 repeats	Back alignment and domain information

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus	Back alignment and domain information

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea	Back alignment and domain information

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region	Back alignment and domain information

>PRK10115 protease 2; Provisional	Back alignment and domain information

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A	Back alignment and domain information

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation	Back alignment and domain information

>smart00320 WD40 WD40 repeats	Back alignment and domain information

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length	Back alignment and domain information

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins	Back alignment and domain information

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region	Back alignment and domain information

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118	Back alignment and domain information

>COG5290 IkappaB kinase complex, IKAP component [Transcription]	Back alignment and domain information

>PHA02713 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	Back alignment and domain information

>PRK13684 Ycf48-like protein; Provisional	Back alignment and domain information

>COG5276 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118	Back alignment and domain information

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A	Back alignment and domain information

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases	Back alignment and domain information

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]	Back alignment and domain information

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional	Back alignment and domain information

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03218 maturation of RBCL 1; Provisional	Back alignment and domain information

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2	Back alignment and domain information

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03218 maturation of RBCL 1; Provisional	Back alignment and domain information

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation	Back alignment and domain information

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>KOG2444 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional	Back alignment and domain information

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others	Back alignment and domain information

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases	Back alignment and domain information

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain	Back alignment and domain information

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea	Back alignment and domain information

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	Back alignment and domain information

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2	Back alignment and domain information

>PHA02713 hypothetical protein; Provisional	Back alignment and domain information

>PRK13684 Ycf48-like protein; Provisional	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain	Back alignment and domain information

>KOG2444 consensus WD40 repeat protein [General function prediction only]	Back alignment and domain information

>PHA03098 kelch-like protein; Provisional	Back alignment and domain information

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B	Back alignment and domain information

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin	Back alignment and domain information

>PLN03077 Protein ECB2; Provisional	Back alignment and domain information

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3	Back alignment and domain information

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PF14727 PHTB1_N: PTHB1 N-terminus	Back alignment and domain information

>PLN03077 Protein ECB2; Provisional	Back alignment and domain information

>PHA03098 kelch-like protein; Provisional	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex	Back alignment and domain information

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]	Back alignment and domain information

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B	Back alignment and domain information

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3	Back alignment and domain information

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain	Back alignment and domain information

>PHA02790 Kelch-like protein; Provisional	Back alignment and domain information

>PRK15359 type III secretion system chaperone protein SscB; Provisional	Back alignment and domain information

>COG5276 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional	Back alignment and domain information

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)	Back alignment and domain information

>PHA02790 Kelch-like protein; Provisional	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []	Back alignment and domain information

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]	Back alignment and domain information

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A	Back alignment and domain information

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]	Back alignment and domain information

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others	Back alignment and domain information

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]	Back alignment and domain information

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>PRK13614 lipoprotein LpqB; Provisional	Back alignment and domain information

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]	Back alignment and domain information

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1208
3mkr_B		320	Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomp		1e-71
3mkq_A		814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-60
2ynp_A		604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-55
2yno_A		310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-50
2ynn_A		304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-50
3mv2_A		325	Crystal Structure Of A-Cop In Complex With E-Cop Le		2e-36
3mv3_A		325	Crystal Structure Of A-Cop In Complex With E-Cop Le		2e-35
2ymu_A		577	Structure Of A Highly Repetitive Propeller Structur		6e-31
3mkq_B		177	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-27
3n0d_A		315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-26
3n0d_A		315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-09
2co0_A		315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-26
2co0_A		315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-09
2cnx_A		315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-26
2cnx_A		315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		8e-09
3n0e_A		315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-26
3n0e_A		315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
2g9a_A		311	Structural Basis For The Specific Recognition Of Me		3e-26
2g9a_A		311	Structural Basis For The Specific Recognition Of Me		2e-09
3psl_A		318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-26
3psl_A		318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
4a7j_A		318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-26
4a7j_A		318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-09
2h9l_A		329	Wdr5delta23 Length = 329		3e-26
2h9l_A		329	Wdr5delta23 Length = 329		2e-09
3smr_A		312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-26
3smr_A		312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-09
3emh_A		318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-26
3emh_A		318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-09
2g99_A		308	Structural Basis For The Specific Recognition Of Me		3e-26
2g99_A		308	Structural Basis For The Specific Recognition Of Me		2e-09
2h13_A		317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-26
2h13_A		317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
2h9m_A		313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-26
2h9m_A		313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-09
2h68_A		312	Histone H3 Recognition And Presentation By The Wdr5		3e-26
2h68_A		312	Histone H3 Recognition And Presentation By The Wdr5		2e-09
2gnq_A		336	Structure Of Wdr5 Length = 336		4e-26
2gnq_A		336	Structure Of Wdr5 Length = 336		2e-09
2xl2_A		334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-26
2xl2_A		334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-09
3mxx_A		315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-26
3mxx_A		315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-09
1vyh_C		410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-26
1vyh_C		410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-15
2ovp_B		445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-20
2ovp_B		445	Structure Of The Skp1-Fbw7 Complex Length = 445		9e-11
3shf_A		1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-17
3shf_A		1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-09
1p22_A		435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-17
3sfz_A		1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-17
3sfz_A		1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-09
3izb_a		319	Localization Of The Small Subunit Ribosomal Protein		7e-15
3izb_a		319	Localization Of The Small Subunit Ribosomal Protein		2e-13
3rfg_A		319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-15
3rfg_A		319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-13
3rfh_A		319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-15
3rfh_A		319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-13
1trj_A		314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-14
1trj_A		314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-13
3jyv_R		313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-14
3jyv_R		313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-13
3dm0_A		694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-14
3dm0_A		694	Maltose Binding Protein Fusion With Rack1 From A. T		9e-12
3dm0_A		694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-11
3dm0_A		694	Maltose Binding Protein Fusion With Rack1 From A. T		5e-08
3frx_A		319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-14
3frx_A		319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-12
1erj_A		393	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-14
1erj_A		393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-05
1nex_B		464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-13
1nex_B		464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		6e-07
3iza_B		1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-13
3mks_B		464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		6e-13
3mks_B		464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		9e-07
2xzm_R		343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		8e-13
2xzm_R		343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-04
3fm0_A		345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-12
3fm0_A		345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-06
3zey_7		318	High-resolution Cryo-electron Microscopy Structure		4e-12
3zey_7		318	High-resolution Cryo-electron Microscopy Structure		9e-12
4aow_A		340	Crystal Structure Of The Human Rack1 Protein At A R		4e-10
4aow_A		340	Crystal Structure Of The Human Rack1 Protein At A R		2e-08
2zkq_a		317	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-10
2zkq_a		317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-08
2hes_X		330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-09
2hes_X		330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-06
2pbi_B		354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-09
2pbi_B		354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		7e-04
3iz6_a		380	Localization Of The Small Subunit Ribosomal Protein		2e-08
3ow8_A		321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-08
3ow8_A		321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-04
3sn6_B		351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-07
3sn6_B		351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-04
1got_B		340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-07
1got_B		340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-04
1a0r_B		340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-07
1a0r_B		340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-04
1gg2_B		340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-07
1gg2_B		340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-04
2bcj_B		340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-07
2bcj_B		340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-04
3odt_A		313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-06
3cfs_B		414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-06
3cfv_B		414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-06
2yba_A		422	Crystal Structure Of Nurf55 In Complex With Histone		2e-06
3c99_A		432	Structural Basis Of Histone H4 Recognition By P55 L		2e-06
2xyi_A		430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-06
1r5m_A		425	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-06
3gfc_A		425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-06
4ggd_A		431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-05
4gga_A		420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-05
1nr0_A		611	Two Seven-Bladed Beta-Propeller Domains Revealed By		9e-05
4ggc_A		318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-04
3acp_A		417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		4e-04
3vl1_A		420	Crystal Structure Of Yeast Rpn14 Length = 420		4e-04
3jpx_A		402	Eed: A Novel Histone Trimethyllysine Binder Within		4e-04
3jzn_A		366	Structure Of Eed In Apo Form Length = 366		5e-04
3iiw_A		365	Crystal Structure Of Eed In Complex With A Trimethy		5e-04
2qxv_A		361	Structural Basis Of Ezh2 Recognition By Eed Length		5e-04
3iiy_A		365	Crystal Structure Of Eed In Complex With A Trimethy		6e-04

>pdb|3MKR|B Chain B, Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomplex Of The Copi Vesicular Coat Length = 320