Citrus Sinensis ID: 000971
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1206 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.980 | 0.824 | 0.695 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.966 | 0.811 | 0.690 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.973 | 0.825 | 0.681 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.980 | 0.818 | 0.672 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.981 | 0.812 | 0.686 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.981 | 0.812 | 0.685 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.980 | 0.815 | 0.665 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.978 | 0.806 | 0.677 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.975 | 0.816 | 0.668 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.961 | 0.789 | 0.674 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1790 bits (4636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 854/1228 (69%), Positives = 1007/1228 (82%), Gaps = 46/1228 (3%)
Query: 1 MEGSHDSYLASTSLRGNI---------SRWRTSSVGAFSKSLREEDDEEALKWAALEKLP 51
ME ++ S L +SLRG+ S WR + V FS+S R+EDDEEALKWAALEKLP
Sbjct: 1 MEPANLSNLRGSSLRGSTRGSLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLP 60
Query: 52 TYNRLRKGLLTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVG 111
T++RLRKGLL S+G A EVD+++LG Q+R+ L+ +LVKV + DNEKFLLKLK+RIDRVG
Sbjct: 61 TFDRLRKGLLFGSQGAAAEVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVG 120
Query: 112 IDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDV 171
IDLP +EVRYEHLN++ +AY+ S++LP+F F T E + N L IL SRK+ LTILKD+
Sbjct: 121 IDLPTIEVRYEHLNIDADAYVGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDI 180
Query: 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYI 231
SGIIKP RMTLLLGPP+SGKTTLLLALAGKLD +LKV+G+V+YNGH++ EFVP+RTAAYI
Sbjct: 181 SGIIKPCRMTLLLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYI 240
Query: 232 SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATE 291
SQHD HIGEMTVRETL FSARCQGVGSR+E+L EL+RRE A IKPD DID+YMKA ATE
Sbjct: 241 SQHDLHIGEMTVRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATE 300
Query: 292 GQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEIS 351
GQEANV+TDY LK+LGL++CADTMVGD+MIRGISGG++KRVTTGEM+VGP+ ALFMDEIS
Sbjct: 301 GQEANVVTDYVLKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEIS 360
Query: 352 TGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREL 411
TGLDSSTT+ IVN L+Q V I GTAVISLLQPAPETY+LFDDIILLSDG IVYQGPR+
Sbjct: 361 TGLDSSTTYSIVNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDD 420
Query: 412 VLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVG 471
VLEFFESMGFKCP+RKGVADFLQEVTS+KDQ+QYW+ + +PYRF+T +EFAEA+QSFHVG
Sbjct: 421 VLEFFESMGFKCPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVG 480
Query: 472 QKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQIS 531
+K+ DEL TPFDK+K H AALT E YG GK+ELLK C RELLLMKRNSFVY+FK +Q++
Sbjct: 481 RKLGDELATPFDKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLT 540
Query: 532 SVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRD 591
+AL MTLF RT+M + + DGGIYAGALFF M+MFNG++E++MTI KLPVFYKQRD
Sbjct: 541 IMALITMTLFFRTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRD 600
Query: 592 FRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMAS 651
FFP WAYAIPSWILKIP++ +EV +WV LTYYVIG DPN RF KQ+LL + VNQMAS
Sbjct: 601 LLFFPSWAYAIPSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMAS 660
Query: 652 ALFRLIAATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAI 693
+FR I A GR+M VA+TF +D+K WW W YW SPM Y+ N+I
Sbjct: 661 GMFRFIGAVGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSI 720
Query: 694 VANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAI 753
+ NEF G W P E++G V+KSRGFF AYWYW+G+GAL GF ++FN +++A+
Sbjct: 721 LVNEFDGKKWNHIVPGGNETLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLAL 780
Query: 754 TFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGS 813
+LN +KP+AV+ E+ E+ E+GE S S+ ++E+Q +
Sbjct: 781 AYLNPFDKPQAVLPEDGEN----------------AENGEVSSQITSTDGGDSISESQNN 824
Query: 814 HPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALM 873
K+GM+LPFEPHS+TFD+VVYSVDMPQEMK QG ED+LVLL G+SGAFRPGVLTALM
Sbjct: 825 ---KKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALM 881
Query: 874 GVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933
GVSGAGKTTLMDVL+GRKTGGYI G I ISGYPKKQETFARISGYCEQNDIHSP+VTVYE
Sbjct: 882 GVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYE 941
Query: 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAV 993
SL+YSAWLRLP +VD +TRKMF++EVMELVEL PL +LVGLPGV+GLSTEQRKRLTIAV
Sbjct: 942 SLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAV 1001
Query: 994 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFL
Sbjct: 1002 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1061
Query: 1054 MKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFN 1113
MKRGGQEIYVGPLGRHSC LI YFE+ PGV KIK+GYNPATWMLEVTAS+QE+ LG+DF
Sbjct: 1062 MKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFT 1121
Query: 1114 DIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQY 1173
++++ S+LYRRNKALI EL P PGSKDL+F TQYSQS +TQ +ACLWKQHWSYWRNP Y
Sbjct: 1122 EVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAY 1181
Query: 1174 TAVRFFFTAFIAVLLGSLFWDMGSKTLK 1201
TAVRF FT FIA++ G++FWD+G+K K
Sbjct: 1182 TAVRFIFTTFIALIFGTMFWDLGTKVSK 1209
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1744 bits (4517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1210 (69%), Positives = 996/1210 (82%), Gaps = 45/1210 (3%)
Query: 13 SLRGNI-----SRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGE 67
S+RG+I S WR + FS+S R+EDDEEALKWAALEKLPTY+RLRKG+L S+G
Sbjct: 21 SMRGSIRENSNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRLRKGILFGSQGA 80
Query: 68 AFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVE 127
A EVDV + G+ +R+ L+ +LVKV + DNEKFLLKLK+RIDRVGID P +EVR+EHLN++
Sbjct: 81 AAEVDVDDSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNID 140
Query: 128 GEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPP 187
+AY+ S+ALP+FT F + E + + + ILPS+K+ +TILKDVSGI+KP RMTLLLGPP
Sbjct: 141 ADAYVGSRALPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPP 200
Query: 188 ASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247
SGKTTLLLALAGKLDS+LKV+G+VTYNGH++ EFVP+RTAAYISQHD HIGEMTVRETL
Sbjct: 201 GSGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETL 260
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
FSARCQGVGSRYE+L EL+RRE A IKPD DID++MKA +TEGQEA V+TDY LK+LG
Sbjct: 261 EFSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILG 320
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLK 367
L++CADTMVGD+MIRGISGG++KRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN LK
Sbjct: 321 LDICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLK 380
Query: 368 QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRK 427
Q V I GTA+ISLLQPAPETY+LFDDIILLSDG IVY+GPRE VLEFFESMGFKCP+RK
Sbjct: 381 QSVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERK 440
Query: 428 GVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKS 487
G ADFLQEVTS+KDQ+QYW +++PYRF+T +EFAEA+QSFHVG+K+SDEL+T FDKSKS
Sbjct: 441 GAADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKS 500
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
H AALTT+ YG GKR+LLK C RELLLM+RNSFVY+FK Q+ +AL MT+F RTKM
Sbjct: 501 HPAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMP 560
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
+ S DGGIY+GALFF M+MFNGL+E+ MT+ KLPVFYKQRDF F+P WAYAIPSWIL
Sbjct: 561 RDSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWIL 620
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
KIP++F EV +WVFLTYYV+G DPN GRFFKQ+LL L VNQMASALFR IAA GR+M VA
Sbjct: 621 KIPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVA 680
Query: 668 NTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN 709
+TF D+K WW W YW SP+ Y+ NAI+ NEF G WK
Sbjct: 681 STFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAG 740
Query: 710 SYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEE 769
E +G V+++RGFF AYWYW+G+GAL GFI++FN+ +++A+ +LN +KP+A I++E
Sbjct: 741 GTEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDE 800
Query: 770 SESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSL 829
SE+N+ ++ + + + G+S S KK+GM+LPF+PHS+
Sbjct: 801 SENNESESSPQ--ITSTQEGDS--------------------ASENKKKGMVLPFDPHSI 838
Query: 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 889
TFDEVVYSVDMP EM+ G +++LVLL +SGAFRPGVLTALMGVSGAGKTTLMDVL+G
Sbjct: 839 TFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 898
Query: 890 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDS 949
RKTGGYI G+I ISGYPKKQ+TFARISGYCEQNDIHSP+VTV+ESL+YSAWLRLP +V+
Sbjct: 899 RKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNE 958
Query: 950 ETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1009
E R MF+EEVM+LVEL PL +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTS
Sbjct: 959 EKRMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1018
Query: 1010 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRH 1069
GLDARAAAIVMR VRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGGQEIYVGPLGR
Sbjct: 1019 GLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQ 1078
Query: 1070 SCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALI 1129
SC LI YFE+IPGV KI +GYNPATWMLEVTASSQE+ALGVDF D+++ S+LYRRNKALI
Sbjct: 1079 SCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALI 1138
Query: 1130 EELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLG 1189
+ELS P PG+ DL+F +++SQ +TQ MACLWKQHWSYWRNP YTAVR FT FIA++ G
Sbjct: 1139 DELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFG 1198
Query: 1190 SLFWDMGSKT 1199
++FWD+G+K
Sbjct: 1199 TMFWDIGTKV 1208
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1733 bits (4488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 832/1220 (68%), Positives = 985/1220 (80%), Gaps = 46/1220 (3%)
Query: 1 MEGSHDSYLASTSLRGNISRWRTSS-VGAFSKSLREEDDEEALKWAALEKLPTYNRLRKG 59
MEG+ + AS S+R N S W+ S FS+S REEDDEEAL+WAALEKLPT++RLRKG
Sbjct: 1 MEGT-SFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKG 59
Query: 60 LLTTSR--GEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKV 117
+LT S G E+D+ LG Q ++L+ +L+KV + ++EK L KLK RIDRVGIDLP +
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 118 EVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKP 177
EVR++HL VE E ++ +ALP+F F + + N L ++P+RKK TIL DVSGI+KP
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKP 179
Query: 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNH 237
GRM LLLGPP+SGKTTLLLALAGKLD LK +GRVTYNGH M EFVP+RTAAYI Q+D H
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRET A++AR QGVGSRY++LTELARRE EA IKPDPDID++MKA++T G++ NV
Sbjct: 240 IGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNV 299
Query: 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGLEVCADTMVGD+M+RGISGG++KRVTTGEM+VGP+ ALFMDEISTGLDSS
Sbjct: 300 MTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
TT+QIVN L+ +VHI +GTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFFE
Sbjct: 360 TTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477
+MGFKCP RKGVADFLQEVTS+KDQ QYW +++PYRF+ V EFAEAFQSFHVG++I DE
Sbjct: 420 TMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDE 479
Query: 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAF 537
L PFDK+KSH AALTT+ YG G +EL+KT SRE LLMKRNSFVY FK Q+ +A
Sbjct: 480 LALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLT 539
Query: 538 MTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPP 597
MTLF RT+M K + DG +Y GALFF M+MFNG++E+SMTIAKLPVFYKQRD F+P
Sbjct: 540 MTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPA 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLI 657
W Y++P W+LKIPISF+E A+ F+TYYVIG DPN GR FKQY+L + +NQMASALF+++
Sbjct: 600 WVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMV 659
Query: 658 AATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFL 699
AA GR+M+VANTF +DIKKWW W YW SP+ Y QNAI+ANEF
Sbjct: 660 AALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFF 719
Query: 700 GYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQL 759
G+SW + NS E++GV LKSRGF HAYWYW+G GAL GF++LFN GFT+A+TFLN L
Sbjct: 720 GHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSL 779
Query: 760 EKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRG 819
KP+AVI EE S++ + + SAR E G +G N KKRG
Sbjct: 780 GKPQAVIAEEPASDETELQ-------SARSE-GVVEAGAN----------------KKRG 815
Query: 820 MILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 879
M+LPFEPHS+TFD VVYSVDMPQEM QG ED+LVLL G++GAFRPGVLTALMGVSGAG
Sbjct: 816 MVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAG 875
Query: 880 KTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 939
KTTLMDVL+GRKTGGYI GNITISGYPK Q+TFARISGYCEQ DIHSP VTVYESL+YSA
Sbjct: 876 KTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSA 935
Query: 940 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 999
WLRLP EVD RK+FIEEVMELVEL PL Q+LVGLPG SGLSTEQRKRLTIAVELVANP
Sbjct: 936 WLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANP 995
Query: 1000 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFL+KRGG+
Sbjct: 996 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGE 1055
Query: 1060 EIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCS 1119
EIYVGPLG S LI+YFE+I G+ KI +GYNPATWMLEV+ +SQE ALGVDF +++ S
Sbjct: 1056 EIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNS 1115
Query: 1120 ELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFF 1179
ELY+RNK LI+ELS+P PGSKDLYFPTQYSQS TQ MA LWKQHWSYWRNP YTAVRF
Sbjct: 1116 ELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFL 1175
Query: 1180 FTAFIAVLLGSLFWDMGSKT 1199
FT IA++ G++FWD+G KT
Sbjct: 1176 FTIGIALMFGTMFWDLGGKT 1195
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1709 bits (4426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 814/1211 (67%), Positives = 981/1211 (81%), Gaps = 29/1211 (2%)
Query: 13 SLRGNISRWRTSS--VGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFE 70
S+R S WR +S AF +S+REEDDEEALKWAA+EKLPTY+R+RKG+LT G E
Sbjct: 15 SVRRTASSWRGTSGRSDAFGRSVREEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEE 72
Query: 71 VDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEA 130
VD+ LGLQ+R+ LI +LV+ E DNE+FLLKL+ R++RVGID P +EVR+E+L+++ EA
Sbjct: 73 VDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEA 132
Query: 131 YLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASG 190
Y+ ++ +P+FT F++ D+ + + I+ S K+ ++IL D+SGII+PGRM+LLLGPP SG
Sbjct: 133 YVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSG 192
Query: 191 KTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFS 250
KT+LLLALAGKLDS+LKVSGRVTYNGHDM EFVP+RT+AYI QHD HIGEMTVRETLAFS
Sbjct: 193 KTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFS 252
Query: 251 ARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV 310
ARCQGVG+RY++LTEL+RRE EA IKPDPDIDVYMKAI+ EGQE+ V+TDY LK+LGLE+
Sbjct: 253 ARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTDYILKILGLEI 311
Query: 311 CADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHV 370
CADTMVGD MIRGISGG++KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN L+Q V
Sbjct: 312 CADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSV 371
Query: 371 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVA 430
HI GTA+I+LLQPAPETYDLFDDI+LLS+GQIVYQGPRE +LEFFE+MGFKCP+RKGVA
Sbjct: 372 HILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVA 431
Query: 431 DFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRA 490
DFLQEVTSRKDQ QYW +++PYR+++V +F+EAF+ FHVG+ + ELR PFD++++H A
Sbjct: 432 DFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPA 491
Query: 491 ALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHS 550
ALTT YG K EL K C SRE LLMKRNSFVYIFK+ Q+ + MT+FLRTKMH+ S
Sbjct: 492 ALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRS 551
Query: 551 LTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIP 610
+ DG I+ GA+F +FNG AE++M+IAKLP+FYKQRD F+P WAYA+P+W+LKIP
Sbjct: 552 VEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIP 611
Query: 611 ISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF 670
ISFLE AVW+ +TYYV+G DPN RFF+ Y+L + ++QMAS LFRL+AA GR MVVA+TF
Sbjct: 612 ISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTF 671
Query: 671 ------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFT--PNS 710
E+IKKWW W YW SP+ YAQNAI NEFLG+SW K S
Sbjct: 672 GSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQS 731
Query: 711 YESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEES 770
+++GVQVLK RG F A WYW+G+GAL G+I+LFN+ F + + +L+ L K +AV++EE
Sbjct: 732 NDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEE 791
Query: 771 ESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLT 830
K NR V+L G ++ ++ + E G+ +KRGM+LPF P S+T
Sbjct: 792 LREKHVNRTGENVELLTLGTDSQNSPSDANAGRG----EITGADTRKRGMVLPFTPLSIT 847
Query: 831 FDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890
FD + YSVDMPQEMK +GV ED+L+LL G+SGAFRPGVLTALMGVSGAGKTTLMDVL+GR
Sbjct: 848 FDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 907
Query: 891 KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSE 950
KTGGYI G+I+ISGYPKKQETFARI+GYCEQNDIHSP VTVYESLLYSAWLRLP EVDSE
Sbjct: 908 KTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSE 967
Query: 951 TRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010
RKMF+EEVMELVEL L +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 968 ARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1027
Query: 1011 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHS 1070
LDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGG+EIYVGPLG +S
Sbjct: 1028 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNS 1087
Query: 1071 CQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIE 1130
C LI+YFE I GV KIKDGYNPATWMLEVT +QE LG++F +++R S+LY+RNK LI
Sbjct: 1088 CHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLIS 1147
Query: 1131 ELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGS 1190
ELS P PGS DL+FPTQ+SQ FTQ MACLWKQH SYWRNP YTA R FFT IA++ G+
Sbjct: 1148 ELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGT 1207
Query: 1191 LFWDMGSKTLK 1201
+F ++G K K
Sbjct: 1208 IFLNLGKKINK 1218
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1674 bits (4334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 837/1220 (68%), Positives = 962/1220 (78%), Gaps = 36/1220 (2%)
Query: 13 SLRGNI-SRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLL-------TTS 64
S+RG+ S WR FS+S REEDDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 18 SMRGDSGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGD 76
Query: 65 RGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHL 124
G VDV LG ++R+ L+ +LV+V + DNEKFLLKLK R+DRVGID+P +EVR+EHL
Sbjct: 77 GGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHL 136
Query: 125 NVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLL 184
E E + + LP+ T E+ N LGILP+RK+ + +L DVSGIIKP RMTLLL
Sbjct: 137 EAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLL 196
Query: 185 GPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244
GPP SGKTTLLLALAG+L LK SG+VTYNGH M EFVPERTAAYISQHD HIGEMTVR
Sbjct: 197 GPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVR 256
Query: 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
ETLAFSARCQGVGSR+++LTEL+RRE A IKPD DID +MKA A GQEANV TDY LK
Sbjct: 257 ETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILK 316
Query: 305 VLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
+LGLE+CADTMVGDEM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN
Sbjct: 317 ILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVN 376
Query: 365 CLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCP 424
L+Q VHI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFFESMGFKCP
Sbjct: 377 SLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCP 436
Query: 425 KRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDK 484
RKGVADFLQEVTS+KDQ+QYW +KPYRFVTV+EF AFQSFH G+ I++EL PFDK
Sbjct: 437 DRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDK 496
Query: 485 SKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRT 544
SKSH AAL T YGA +ELLK I RE+LLMKRNSFVY+F+ Q+ V+L MTLF RT
Sbjct: 497 SKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRT 556
Query: 545 KMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPS 604
KM + S+T GGIY GALFF M+MFNG +E+++T+ KLPVF+KQRD F+P W+Y IPS
Sbjct: 557 KMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPS 616
Query: 605 WILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSM 664
WILKIPI+F+EV +VFLTYYVIG D N G FFKQYLL LA+NQMA +LFR I R+M
Sbjct: 617 WILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNM 676
Query: 665 VVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKF 706
+VAN F E +KKWW W YW SPM YAQNAI NE +G+SW K
Sbjct: 677 IVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKI 736
Query: 707 TPNSY--ESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRA 764
+S E++GVQVLKSRG F A WYW+G GA+ GF +LFN FT+A+T+L R
Sbjct: 737 VNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQ 796
Query: 765 VITEESESNKQDN---RIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMI 821
++EE K+ N I G V LS+ S G + + S I+ + + +RGM+
Sbjct: 797 SVSEEELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTENDSTIVDD--DTEVTQRGMV 852
Query: 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 881
LPF P SL+FD V YSVDMPQEMK QGV +D+L LL G+SG+FRPGVLTALMGVSGAGKT
Sbjct: 853 LPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKT 912
Query: 882 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 941
TLMDVL+GRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VTVYESLL+SAWL
Sbjct: 913 TLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWL 972
Query: 942 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001
RLP +VDS TRKMFIEEVMELVELK L +LVGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 973 RLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1032
Query: 1002 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061
IFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQP IDIF+AFDELFLMKRGG+EI
Sbjct: 1033 IFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1092
Query: 1062 YVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSEL 1121
Y GPLG HS +LI YFE+IPGV KIKDGYNPATWMLEVT QE ALGVDF+DI++ SEL
Sbjct: 1093 YAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSEL 1152
Query: 1122 YRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFT 1181
Y+RNKALI++LS+P P S DLYFPTQYSQS+ TQ MACLWKQ+ SYWRNP Y AVRFFFT
Sbjct: 1153 YQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFT 1212
Query: 1182 AFIAVLLGSLFWDMGSKTLK 1201
IA+L G++FWD+G K K
Sbjct: 1213 TVIALLFGTIFWDLGGKVTK 1232
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1670 bits (4325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 836/1220 (68%), Positives = 961/1220 (78%), Gaps = 36/1220 (2%)
Query: 13 SLRGNI-SRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLL-------TTS 64
S+RG+ S WR FS+S REEDDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 18 SMRGDSGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGD 76
Query: 65 RGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHL 124
G VDV LG ++R+ L+ +LV+V + DNEKFLLKLK R+DRVGID+P +EVR+EHL
Sbjct: 77 GGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHL 136
Query: 125 NVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLL 184
E E + + LP+ T E+ N LGILP+RK+ + +L DVSGIIKP RMTLLL
Sbjct: 137 EAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLL 196
Query: 185 GPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244
GPP SGKTTLLLALAG+L LK SG+VTYNGH M EFVPERTAAYISQHD HIGEMTVR
Sbjct: 197 GPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVR 256
Query: 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
ETLAFSARCQGVGSR+++LTEL+RRE A IKPD DID +MKA A GQEANV TDY LK
Sbjct: 257 ETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILK 316
Query: 305 VLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
+LGLE+CADTMVGDEM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN
Sbjct: 317 ILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVN 376
Query: 365 CLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCP 424
L+Q VHI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFFES GFKCP
Sbjct: 377 SLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCP 436
Query: 425 KRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDK 484
RKGVADFLQEVTS+KDQ+QYW +KPYRFVTV+EF AFQSFH G+ I++EL PFDK
Sbjct: 437 DRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDK 496
Query: 485 SKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRT 544
SKSH AAL T YGA +ELLK I RE+LLMKRNSFVY+F+ Q+ V+L MTLF RT
Sbjct: 497 SKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRT 556
Query: 545 KMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPS 604
KM + S+T GGIY GALFF M+MFNG +E+++T+ KLPVF+KQRD F+P W+Y IPS
Sbjct: 557 KMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPS 616
Query: 605 WILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSM 664
WILKIPI+F+EV +VFLTYYVIG D N G FFKQYLL LA+NQMA +LFR I R+M
Sbjct: 617 WILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNM 676
Query: 665 VVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKF 706
+VAN F E +KKWW W YW SPM YAQNAI NE +G+SW K
Sbjct: 677 IVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKI 736
Query: 707 TPNSY--ESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRA 764
+S E++GVQVLKSRG F A WYW+G GA+ GF +LFN FT+A+T+L R
Sbjct: 737 VNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQ 796
Query: 765 VITEESESNKQDN---RIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMI 821
++EE K+ N I G V LS+ S G + + S I+ + + +RGM+
Sbjct: 797 SVSEEELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTENDSTIVDD--DTEVTQRGMV 852
Query: 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 881
LPF P SL+FD V YSVDMPQEMK QGV +D+L LL G+SG+FRPGVLTALMGVSGAGKT
Sbjct: 853 LPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKT 912
Query: 882 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 941
TLMDVL+GRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VTVYESLL+SAWL
Sbjct: 913 TLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWL 972
Query: 942 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001
RLP +VDS TRKMFIEEVMELVELK L +LVGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 973 RLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1032
Query: 1002 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061
IFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQP IDIF+AFDELFLMKRGG+EI
Sbjct: 1033 IFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1092
Query: 1062 YVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSEL 1121
Y GPLG HS +LI YFE+IPGV KIKDGYNPATWMLEVT QE ALGVDF+DI++ SEL
Sbjct: 1093 YAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSEL 1152
Query: 1122 YRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFT 1181
Y+RNKALI++LS+P P S DLYFPTQYSQS+ TQ MACLWKQ+ SYWRNP Y AVRFFFT
Sbjct: 1153 YQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFT 1212
Query: 1182 AFIAVLLGSLFWDMGSKTLK 1201
IA+L G++FWD+G K K
Sbjct: 1213 TVIALLFGTIFWDLGGKVTK 1232
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1670 bits (4324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 814/1224 (66%), Positives = 969/1224 (79%), Gaps = 42/1224 (3%)
Query: 13 SLRGNISRWRTSSVGAFSKSLR----EEDDEEALKWAALEKLPTYNRLRKGLLTTSR--- 65
SLR S WR+ FS+S E+DDEEAL+WAALE+LPTY+R+R+G+L S
Sbjct: 10 SLRREGSMWRSGG-DVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 66 ---GEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYE 122
GE EVDV LG ++ + LI +LV+ + D+E+FLLKL+ R+DRVGID P +EVR+E
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 123 HLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTL 182
+L VE + ++ ++ LP+ T E I N L ILP++K+ +T+L DVSGIIKP RMTL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 183 LLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242
LLGPP SGKTTLLLALAGKLD LKVSG+VTYNGH M EFVPERTAAYISQHD HIGEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG+RYE+LTELARRE A IKPD DID+YMKA A GQE++V+TDY
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 303 LKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGL++CADT+VG+EM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QI
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 363 VNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFK 422
VN L+Q +HI GTAVISLLQPAPETY+LFDDIILLSDGQ+VYQGPRE VLEFFE MGF+
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 423 CPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPF 482
CP RKGVADFLQEVTSRKDQ QYW +++PYRFV V++FA+AF+SFHVG+ I +EL PF
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 483 DKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFL 542
D+++SH AAL T YG ++ELLK I RELLLMKRN+F+YIFK ++ +AL MT F
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 543 RTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT M +H G IY GAL+FA VMFNG AE++MT+ KLPVF+KQRD FFP WAY I
Sbjct: 549 RTSM-RHDRDYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTI 607
Query: 603 PSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGR 662
PSWIL+IPI+FLEV V+VF+TYYVIG DP+ RFFKQYLL LA+NQM+SALFR IA GR
Sbjct: 608 PSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGR 667
Query: 663 SMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWK 704
MVV++TF D+KKWW W YW SP+SYAQNAI NEFLG+SW
Sbjct: 668 DMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 705 KFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRA 764
+ P ++GV VLKSRG F A WYW+GLGAL G+ LLFNL +T+A++ L+ A
Sbjct: 728 QILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHA 787
Query: 765 VITEESESNKQDNR----IRGTVQLSARGESGE--DISGRNSSSKSLILTEAQGSHPKKR 818
++E++ K N + G +R + E I+ +NS S S ++
Sbjct: 788 SMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINS------ADSSASRK 841
Query: 819 GMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGA 878
GM+LPF P S++F++V YSVDMP+ MK QG+ ED+L+LL G+SG+FRPGVLTALMGVSGA
Sbjct: 842 GMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGA 901
Query: 879 GKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYS 938
GKTTLMDVL+GRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTVYESL++S
Sbjct: 902 GKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFS 961
Query: 939 AWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVAN 998
AWLRLP EVDSE RKMFIEEVM+LVEL L +LVGLPGVSGLSTEQRKRLTIAVELVAN
Sbjct: 962 AWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVAN 1021
Query: 999 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058
PSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQP IDIF+AFDELFLMKRGG
Sbjct: 1022 PSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1081
Query: 1059 QEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRC 1118
+EIYVGP+G++S +LI YFE I GV +IKDGYNPATWMLEVT+S+QE LGVDF++I+R
Sbjct: 1082 EEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQ 1141
Query: 1119 SELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRF 1178
SELY+RNK LIEELS P PGS DL FPTQYS+S TQ +ACLWKQ+WSYWRNP YTAVR
Sbjct: 1142 SELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRL 1201
Query: 1179 FFTAFIAVLLGSLFWDMGSKTLKE 1202
FT IA++ G++FW++G++T K+
Sbjct: 1202 LFTIVIALMFGTMFWNLGTRTKKQ 1225
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1670 bits (4324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 824/1216 (67%), Positives = 952/1216 (78%), Gaps = 36/1216 (2%)
Query: 19 SRWRTSSVGAFSKSLRE------EDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFE-- 70
S W ++ G FS+S EDDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 27 SMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGE 86
Query: 71 -----VDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLN 125
VDV +LG Q+R+ L+ +LV+V E DNE+FLLKLK RIDRVGID+P +EVR+EHL
Sbjct: 87 AGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEHLE 146
Query: 126 VEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLG 185
E E + + LP+ T E N LGILP++K+ + IL DVSGI+KP RMTLLLG
Sbjct: 147 AEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLG 206
Query: 186 PPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245
PP SGKTTLLLALAG+L +K SG+VTYNGH M +FVP+RTAAYISQHD HIGEMTVRE
Sbjct: 207 PPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRE 266
Query: 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKV 305
TL+FSARCQGVGSR+++LTEL+RRE A IKPD DID +MKA A EGQE N+ITDY LK+
Sbjct: 267 TLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYILKI 326
Query: 306 LGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365
LGL++CADTMVGD+M+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV
Sbjct: 327 LGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKS 386
Query: 366 LKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPK 425
L+Q +HI GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE VLEFFE MGFKCP+
Sbjct: 387 LRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPE 446
Query: 426 RKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKS 485
RKGVADFLQEVTSRKDQKQYW +KPYR+V V++FA AFQSFH G+ I++EL TPFDKS
Sbjct: 447 RKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKS 506
Query: 486 KSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTK 545
K+H AALTT YG ELLK I RE LLMKRNSFVYIF+ Q+ V+ MT+F RTK
Sbjct: 507 KNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTK 566
Query: 546 MHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSW 605
MH+ S+TDG I+ GALFF+ M+MFNGL+E+ +TI KLPVF+KQRD FFP W Y IPSW
Sbjct: 567 MHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSW 626
Query: 606 ILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMV 665
ILKIP+SF+EV +VF++YYVIG DP+AGRFFKQYLL LA+NQMA+ALFR + R+M+
Sbjct: 627 ILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMI 686
Query: 666 VANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFT 707
VAN F E +KKWW W YW SPM YAQNAI NEFLG+SW K
Sbjct: 687 VANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVL 746
Query: 708 PNSY--ESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAV 765
NS E++GVQ L+SRG F A WYW+G GAL GFI+LFN FT+A+T+L K +
Sbjct: 747 NNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPS 806
Query: 766 ITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFE 825
++EE KQ N + + S N+ + S I A S P +RGM+LPF
Sbjct: 807 VSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEI---ADNSQPTQRGMVLPFA 863
Query: 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD 885
P SLTFD + YSVDMPQEMK G++ED+L LL G+SG+FRPGVLTALMGVSGAGKTTLMD
Sbjct: 864 PLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMD 923
Query: 886 VLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945
VL+GRKTGGYI GNITISGYPKKQETFAR+SGYCEQNDIHSP VTV ESLL+SAWLRLP
Sbjct: 924 VLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPK 983
Query: 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005
+VDS TRKMFIEEVMELVELKPL +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 984 DVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1043
Query: 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGG+EIYVGP
Sbjct: 1044 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1103
Query: 1066 LGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRN 1125
LG S +LI YFE I GV +IKDGYNPATWMLEV+ SQE ALGVDF DI+R SEL++RN
Sbjct: 1104 LGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRN 1163
Query: 1126 KALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIA 1185
KALI+ELS P PGS +LYFPT+YS S Q +ACLWK H SYWRNP Y A+R FFT IA
Sbjct: 1164 KALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIA 1223
Query: 1186 VLLGSLFWDMGSKTLK 1201
+L G++FWD+G KT K
Sbjct: 1224 LLFGTIFWDLGGKTGK 1239
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1670 bits (4324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 806/1205 (66%), Positives = 964/1205 (80%), Gaps = 29/1205 (2%)
Query: 13 SLRGNISRWRTSSVG-AFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFEV 71
SLR ++S WR+ S F +S REEDDEEALKWAALEKLPTY+RLRKG++T GE EV
Sbjct: 18 SLRRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEV 77
Query: 72 DVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAY 131
D+ LG Q+R+ L+ KLV+ E DNE+FLLKL++R++RVGID P +EVR+EHLN+ EA+
Sbjct: 78 DIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAF 137
Query: 132 LASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGK 191
+ ++ +P+ F+ I + L ++PS K+ ++IL DVSGIIKP RMTLLLGPP +GK
Sbjct: 138 VGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGK 197
Query: 192 TTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSA 251
TTLLLALAGKLD++LKV+G VTYNGH M EFVP+RT+AYISQHD HIGEMTVRETLAFS+
Sbjct: 198 TTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSS 257
Query: 252 RCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVC 311
RCQGVG+RYE+LTEL+RRE EA IKPDPD+DVYMKA+A EGQE+ V+TDY LK+LGL++C
Sbjct: 258 RCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVTDYILKILGLDIC 316
Query: 312 ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVH 371
ADTMVGD MIRGISGG++KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVN L+Q VH
Sbjct: 317 ADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVH 376
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVAD 431
I GTA+I+LLQPAPETYDLFDDI+LLSDGQIVYQGPRE VLEFFESMGFKCP+RKGVAD
Sbjct: 377 ILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVAD 436
Query: 432 FLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAA 491
FLQEVTSRKDQ+QYW + +PYRFV V EF+EAF+SFHVG K+ +EL TPFD+S++H AA
Sbjct: 437 FLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAA 496
Query: 492 LTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSL 551
LTT YG K ELLK CI RE LLMKRNSFVYIFK+ Q+ +AL MT+F RTK+ ++ L
Sbjct: 497 LTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGL 556
Query: 552 TDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPI 611
D I+ GA+F +FNG AE++M+IAKLPVFYKQRD F+PPWAYA+P+WILKIPI
Sbjct: 557 EDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPI 616
Query: 612 SFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF- 670
SF+E VW+ +TYYVIG DPN R F+ YLL + ++Q+AS LFRL+AA GR MVVA+TF
Sbjct: 617 SFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFG 676
Query: 671 -----------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYES 713
E IKK+W W YW SP+ YAQNAI NEFLG+SW K + ++
Sbjct: 677 AFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQT 736
Query: 714 IGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESN 773
+G + L++RG F WYW+G+GAL G+++LFN F + + +L+ L K + ++EE+
Sbjct: 737 LGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQE 796
Query: 774 KQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDE 833
K+ NR V+L+ RG + G E + +K+GM+LPF P S+TFD
Sbjct: 797 KEANRTGANVELATRGSAATSDGGS---------VEIRKDGNRKKGMVLPFTPLSITFDN 847
Query: 834 VVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG 893
V YSVDMPQEMK +GV EDKL+LL G+SGAFRPGVLTALMGVSG GKTTLMDVL+GRKTG
Sbjct: 848 VKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTG 907
Query: 894 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRK 953
GYI G+I ISGYPK QETFARISGYCEQNDIHSP VTVYESLLYSAWLRLP EVD + RK
Sbjct: 908 GYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRK 967
Query: 954 MFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
MF++EVM+LVEL L SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 968 MFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1027
Query: 1014 RAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQL 1073
RAAAIVMR VRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGG+EIYVGPLGR S L
Sbjct: 1028 RAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHL 1087
Query: 1074 ISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELS 1133
I YFE+I GV+KIK+ YNPATWMLEVT SQE LG++F +++R S+LY+RNK LI+ELS
Sbjct: 1088 IKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELS 1147
Query: 1134 KPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFW 1193
P PGSKDL+F TQ+SQS Q +ACLWKQH SYWRNP YTA R FFT IA++ G++FW
Sbjct: 1148 TPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFW 1207
Query: 1194 DMGSK 1198
D+G K
Sbjct: 1208 DLGKK 1212
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1661 bits (4301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 807/1196 (67%), Positives = 934/1196 (78%), Gaps = 37/1196 (3%)
Query: 35 EEDDEEALKWAALEKLPTYNRLRKGLL-----------TTSRGEAFEVDVSNLGLQQRQR 83
EEDDEEAL+WAAL+KLPTY+R+R +L G VDV +LG +R+
Sbjct: 50 EEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRA 109
Query: 84 LINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKF 143
L+ +LV+V + DNE+FLLKLK RI RVGID+P +EVR+EHL VE E + + +P+
Sbjct: 110 LLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLNS 169
Query: 144 YTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD 203
T E+ N LGILP+RK+ L IL D+SGIIKP RMTLLLGPP SGKTT LLALAG+L
Sbjct: 170 ITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRL- 228
Query: 204 SSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
LK SG+VTYNGH M +FVP+RTAAYISQHD HIGEMTVRETL+FSARCQGVGSR+++L
Sbjct: 229 KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDML 288
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
TEL RRE A IKPD D+D +MKA A EGQE+N+ITDY LK+LGLE+CADTMVGD+M+RG
Sbjct: 289 TELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRG 348
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
ISGG+RKRVTTGEM+VGPA A FMDEISTGLDSSTTFQIV L+Q +HI GTAVISLLQ
Sbjct: 349 ISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQ 408
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQK 443
PAPETYDLFDDIILLSDG IVYQGPRE VLEFFE MGFKCP+RKGVADFLQEVTSRKDQK
Sbjct: 409 PAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQK 468
Query: 444 QYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRE 503
QYW +KPYR+V ++EFA AFQSFH G+ I++EL TPFDKSKSH AALTT YG E
Sbjct: 469 QYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAME 528
Query: 504 LLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFF 563
LLK I RELLL+KRNSFVYIF+ Q+ +V+ MT+F RTKMH+ S+ DG I+ GALFF
Sbjct: 529 LLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALFF 588
Query: 564 ATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLT 623
A M+M NGL+E+ +TI KLPVF+KQRD FFP W Y IPSWILK P+SF+EV + F++
Sbjct: 589 AVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMS 648
Query: 624 YYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF------------- 670
YYVIG DPN GRFFKQYLL LAV+QMA+ALFR + R+++VAN F
Sbjct: 649 YYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGG 708
Query: 671 -----EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSY--ESIGVQVLKSRG 723
+ + KWW W YW SPM YAQNA+ NEFLG+SW K NS E++GVQ L SRG
Sbjct: 709 FILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRG 768
Query: 724 FFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTV 783
F A WYW+G GAL GFI+LFN+ FT+A+T+L K + I+EE KQ N +
Sbjct: 769 IFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEKQANINGNVL 828
Query: 784 QLSARGESGE-DISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQ 842
+ S I G + + A S P +RGM+LPF P SLTF+++ YSVDMPQ
Sbjct: 829 DVDTMASSNNLAIVGSTGTGSEI----ADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQ 884
Query: 843 EMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITI 902
EMK G++ED+L LL G+SG FRPGVLTALMGVSGAGKTTLMDVL+GRKTGGYI GNI+I
Sbjct: 885 EMKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISI 944
Query: 903 SGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 962
SGYPKKQETFAR+SGYCEQNDIHSP VTV ESLL+SAWLRLP +VDS TRKMFIEEVMEL
Sbjct: 945 SGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMEL 1004
Query: 963 VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
VELKPL +LVGLPGV+GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT
Sbjct: 1005 VELKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
Query: 1023 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPG 1082
VRNTV+TGRTVVCTIHQP IDIF+AFDELFLMKRGG+EIYVGPLG HS +LI YFE I G
Sbjct: 1065 VRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQG 1124
Query: 1083 VEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDL 1142
V KI DGYNPATWMLEVT SQE AL VDF DI+R SEL++RNKALI+ELS P PGS +L
Sbjct: 1125 VSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSEL 1184
Query: 1143 YFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSK 1198
YFPTQYSQS Q +ACLWKQH SYWRNP Y A+R FFT IA++ G++FWD+G K
Sbjct: 1185 YFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGK 1240
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1206 | ||||||
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.980 | 0.827 | 0.733 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.987 | 0.379 | 0.724 | 0.0 | |
| 359482991 | 1445 | PREDICTED: pleiotropic drug resistance p | 0.987 | 0.824 | 0.726 | 0.0 | |
| 356555801 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.976 | 0.826 | 0.736 | 0.0 | |
| 356550580 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.975 | 0.824 | 0.733 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.976 | 0.825 | 0.732 | 0.0 | |
| 359482993 | 1430 | PREDICTED: pleiotropic drug resistance p | 0.975 | 0.823 | 0.725 | 0.0 | |
| 359482989 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.973 | 0.823 | 0.723 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.990 | 0.812 | 0.720 | 0.0 | |
| 147795710 | 1477 | hypothetical protein VITISV_026320 [Viti | 0.987 | 0.806 | 0.716 | 0.0 |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1859 bits (4816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 896/1222 (73%), Positives = 1032/1222 (84%), Gaps = 39/1222 (3%)
Query: 1 MEGSHDSYLASTSLR-GNISRWRTSSVGAFSKSLR--EEDDEEALKWAALEKLPTYNRLR 57
MEG+ + Y+A SLR G S WR++++ FSKS R E+DDEEALKWAA+E+LPTY+RL+
Sbjct: 1 MEGT-ELYIAGGSLRRGESSIWRSNAMEGFSKSSRGDEDDDEEALKWAAIERLPTYDRLK 59
Query: 58 KGLLTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKV 117
KGLLTTS+GEA E+DV NLG +++ L+++LVKV E DNE FLLKLK+RIDRVGI+LP +
Sbjct: 60 KGLLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMI 119
Query: 118 EVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKP 177
EVR+EHLNVE EA++ S+ALP+F F + E N+L ILPS KK L+IL+DVSGIIKP
Sbjct: 120 EVRFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIKP 179
Query: 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNH 237
RMTLLLGPP+SGKTTLLLALAGKLD LK SGRVTYNGH+M EFVP+RTAAYISQHD H
Sbjct: 180 KRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTH 239
Query: 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRETLAF+ARCQGVG RYE+++EL RRE + IKPDPDIDV+MKA+ATEGQEANV
Sbjct: 240 IGEMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANV 299
Query: 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGLEVCAD MVG+EM+RG+SGG+RKRVTTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 300 VTDYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
TT+QIVN +KQ++HI +GTAVISLLQP PETY+LFDDIILLSDGQIVYQGPRE VLEFFE
Sbjct: 360 TTYQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477
MGFKCP+RKGVADFLQEVTSRKDQ QYW K+KPY FVTV EFAEAFQSF VG+++ E
Sbjct: 420 YMGFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAE 479
Query: 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAF 537
L TPFDKSKSH AALTT+ YG GK ELLK C SRE+LLMKRNSFVYIFKLTQ++ +A+
Sbjct: 480 LSTPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVA 539
Query: 538 MTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPP 597
MTLFLRT+MH+ S+T+GGIY GALFF+ +MFNGL+EIS+TIAKLPVFYKQR F+PP
Sbjct: 540 MTLFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPP 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLI 657
WA+++P WI KIPI+ ++VA+WVFLTYYVIG DPN GRFFKQYLL V+QMAS LFR I
Sbjct: 600 WAFSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFI 659
Query: 658 AATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFL 699
AA GR+M+VANTF ++IKKWW W YW SP+ Y QNAIV NEFL
Sbjct: 660 AAAGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFL 719
Query: 700 GYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQL 759
G SW K P++ E++G+QVL+SRGFF HAYWYW+G+GAL GF LL+N FT+A+TFL L
Sbjct: 720 GNSWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPL 779
Query: 760 EKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRG 819
+KP+AVI+E+S SN G++GE I +S LI+ E +H K++G
Sbjct: 780 QKPQAVISEDSASNTS-------------GKTGEVIQ-LSSVRTELIVEE---NHQKQKG 822
Query: 820 MILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 879
M+LPFEPHS+TF+++ YSVDMPQEMK QG ED+L LL G+SGAFRPGVLTALMGVSGAG
Sbjct: 823 MVLPFEPHSITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAG 882
Query: 880 KTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 939
KTTLMDVL+GRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP VTVYESLLYS+
Sbjct: 883 KTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTVYESLLYSS 942
Query: 940 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 999
WLRLPPEV+SETRKMFIEEVMELVEL PL Q+LVGLPGVSGLSTEQRKRLTIAVELVANP
Sbjct: 943 WLRLPPEVNSETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANP 1002
Query: 1000 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL LMKRGGQ
Sbjct: 1003 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1062
Query: 1060 EIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCS 1119
EIYVGPLGRHSCQLI YFEAI GV IKDGYNPATWMLEV++S+QE+ LG+DF I++ S
Sbjct: 1063 EIYVGPLGRHSCQLIKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLDFAAIYKNS 1122
Query: 1120 ELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFF 1179
ELYRRNKALIEELS P GS DLYFPTQYSQS FTQ MACLWKQHWSYWRNP YTAVRF
Sbjct: 1123 ELYRRNKALIEELSTPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFL 1182
Query: 1180 FTAFIAVLLGSLFWDMGSKTLK 1201
FT IA++ G++FWD+GSKT K
Sbjct: 1183 FTTVIALMFGTMFWDLGSKTTK 1204
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1857 bits (4811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 881/1216 (72%), Positives = 1024/1216 (84%), Gaps = 25/1216 (2%)
Query: 8 YLASTSLRGNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGE 67
Y A+ SLR N S WR+S FS+S R+EDDEEALKWAALEKLPTYNRLRKGLL S+G
Sbjct: 7 YRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLMGSQGA 66
Query: 68 AFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVE 127
A EVDV NLG Q++Q L+ +LVK+ E DNEKFLL+L++RI+RVGI +P++EVR+EHL ++
Sbjct: 67 ASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFEHLTID 126
Query: 128 GEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPP 187
EA++ S+ALPSF F ED L ILPSR++ TIL DVSGIIKP RMTLLLGPP
Sbjct: 127 AEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTLLLGPP 186
Query: 188 ASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247
+SGKTTLLLAL+GKLD +LKV+GRVTYNGH M EFVP+RTAAYISQHD HIGEMTVRETL
Sbjct: 187 SSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMTVRETL 246
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
AFSARCQGVG RY++L EL+RRE A IKPDPD+DV+MKA ATEGQ+ NV+TDY LK+LG
Sbjct: 247 AFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILG 306
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLK 367
L++CADTMVGDEMIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVNCLK
Sbjct: 307 LDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNCLK 366
Query: 368 QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRK 427
Q +HI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFFES GF+CP+RK
Sbjct: 367 QTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFRCPERK 426
Query: 428 GVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKS 487
GVADFLQEVTS+KDQ+QYW KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+DK+KS
Sbjct: 427 GVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPYDKTKS 486
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
H AALTT+ YG K+ELL +SRE LLMKRNSFVY+FKLTQ++ +A+ MTLFLRT+MH
Sbjct: 487 HPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFLRTEMH 546
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
K+S+ DG IY GALFF M+MFNG+AE++M IAKLPVFYKQRD F+P WAYA+P+WIL
Sbjct: 547 KNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYALPTWIL 606
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
KIPI+F+EV VWVF+TYYVIG DPN R F+QYLL L VNQMAS LFRLIA+ GR+M+V+
Sbjct: 607 KIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGRNMIVS 666
Query: 668 NTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN 709
NTF +D+KKWW W YWCSP+ YAQNAIV NEFLG+SWKK
Sbjct: 667 NTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWKKNVTG 726
Query: 710 SYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEE 769
S ES+GV VL +RGFF AYWYW+G GALFGFILLFN G+T+ + FLN +KP+AVI EE
Sbjct: 727 STESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQAVIVEE 786
Query: 770 SESNKQDNRI-----RGTVQLSARGESGEDISGRNSSSKSLILTE--AQGSHPKKRGMIL 822
S++ + +I ++ +A E GE+I SS+ S + E A +H KK+GM+L
Sbjct: 787 SDNAETGGQIELSQRNSSIDQAASTERGEEIGRSISSTSSAVREEAVAGANHNKKKGMVL 846
Query: 823 PFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTT 882
PF+P+S+TFD++ YSVDMP+EMK QGV+EDKL LL G+SGAFRPGVLTALMGVSGAGKTT
Sbjct: 847 PFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVSGAGKTT 906
Query: 883 LMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLR 942
LMDVL+GRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAWLR
Sbjct: 907 LMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLR 966
Query: 943 LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1002
LP +V SETR+MFIEEVMELVEL PL +LVGLPGVSGLSTEQRKRLTIAVELVANPSII
Sbjct: 967 LPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSII 1026
Query: 1003 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062
FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL L+KRGGQEIY
Sbjct: 1027 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIY 1086
Query: 1063 VGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELY 1122
VGPLGR+SC LI+YFE I GV KIKDGYNPATWMLE T ++QE LGVDF +I++ S+LY
Sbjct: 1087 VGPLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFTEIYKNSDLY 1146
Query: 1123 RRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTA 1182
RRNK LI+ELS+P PG+KDLYF TQ+SQ FTQF+ACLWKQ WSYWRNP YTAVRF FT
Sbjct: 1147 RRNKDLIKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTT 1206
Query: 1183 FIAVLLGSLFWDMGSK 1198
FIA++ G++FWD+G+K
Sbjct: 1207 FIALMFGTMFWDLGTK 1222
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482991|ref|XP_003632876.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1855 bits (4805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 880/1211 (72%), Positives = 1024/1211 (84%), Gaps = 20/1211 (1%)
Query: 8 YLASTSLRGNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGE 67
Y A+ SLR N S WR+S FS+S R+EDDEEALKWAALEKLPTYNRLRKGLL S+G
Sbjct: 7 YRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLMGSQGA 66
Query: 68 AFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVE 127
A EVDV NLG Q++Q L+ +LVK+ E DNEKFLL+L++RI+RVGI +P++EVR+EHL ++
Sbjct: 67 ASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFEHLTID 126
Query: 128 GEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPP 187
EA++ S+ALPSF F ED L ILPSR++ TIL DVSGIIKP RMTLLLGPP
Sbjct: 127 AEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTLLLGPP 186
Query: 188 ASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247
+SGKTTLLLAL+GKLD +LKV+GRVTYNGH M EFVP+RTAAYISQHD HIGEMTVRETL
Sbjct: 187 SSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMTVRETL 246
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
AFSARCQGVG RY++L EL+RRE A IKPDPD+DV+MKA ATEGQ+ NV+TDY LK+LG
Sbjct: 247 AFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILG 306
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLK 367
L++CADTMVGDEMIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVNCLK
Sbjct: 307 LDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNCLK 366
Query: 368 QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRK 427
Q +HI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFFES GF+CP+RK
Sbjct: 367 QTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFRCPERK 426
Query: 428 GVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKS 487
GVADFLQEVTS+KDQ+QYW KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+DK+KS
Sbjct: 427 GVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPYDKTKS 486
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
H AALTT+ YG K+ELL +SRE LLMKRNSFVY+FKLTQ++ +A+ MTLFLRT+MH
Sbjct: 487 HPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFLRTEMH 546
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
K+S+ DG IY GALFF M+MFNG+AE++M IAKLPVFYKQRD F+P WAYA+P+WIL
Sbjct: 547 KNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYALPTWIL 606
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
KIPI+F+EV VWVF+TYYVIG DPN R F+QYLL L VNQMAS LFRLIA+ GR+M+V+
Sbjct: 607 KIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGRNMIVS 666
Query: 668 NTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN 709
NTF +D+KKWW W YWCSP+ YAQNAIV NEFLG+SWKK
Sbjct: 667 NTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWKKNVTG 726
Query: 710 SYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEE 769
S ES+GV VL +RGFF AYWYW+G GALFGFILLFN G+T+ + FLN +KP+AVI EE
Sbjct: 727 STESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQAVIVEE 786
Query: 770 SESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTE--AQGSHPKKRGMILPFEPH 827
S++ + +I + + S+ + GE+I SS+ S + E A +H KK+GM+LPF+P+
Sbjct: 787 SDNAETGGQIELSQRNSSIDQRGEEIGRSISSTSSAVREEAVAGANHNKKKGMVLPFQPY 846
Query: 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVL 887
S+TFD++ YSVDMP+EMK QGV+EDKL LL G+SGAFRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 847 SITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 906
Query: 888 SGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 947
+GRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAWLRLP +V
Sbjct: 907 AGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSDV 966
Query: 948 DSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1007
SETR+MFIEEVMELVEL PL +LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 967 KSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1026
Query: 1008 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067
TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL L+KRGGQEIYVGPLG
Sbjct: 1027 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLG 1086
Query: 1068 RHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKA 1127
R+SC LI+YFE I GV KIKDGYNPATWMLE T ++QE LGVDF +I++ S+LYRRNK
Sbjct: 1087 RYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFTEIYKNSDLYRRNKD 1146
Query: 1128 LIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVL 1187
LI+ELS+P PG+KDLYF TQ+SQ FTQF+ACLWKQ WSYWRNP YTAVRF FT FIA++
Sbjct: 1147 LIKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALM 1206
Query: 1188 LGSLFWDMGSK 1198
G++FWD+G+K
Sbjct: 1207 FGTMFWDLGTK 1217
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555801|ref|XP_003546218.1| PREDICTED: pleiotropic drug resistance protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1850 bits (4791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 895/1216 (73%), Positives = 1019/1216 (83%), Gaps = 38/1216 (3%)
Query: 1 MEGSHDSYLASTSLRGNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGL 60
MEGS D Y AS SLR + + WR S V FS+S REEDDEEALKWAALEKLPTYNRLRKGL
Sbjct: 1 MEGS-DIYRASNSLRRSSTVWRNSGVEVFSRSSREEDDEEALKWAALEKLPTYNRLRKGL 59
Query: 61 LTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVR 120
LT S G A E+DVS+LG+Q+RQ+L+ +LVKV E DNE+FLLKLK RIDRVG+D+P +EVR
Sbjct: 60 LTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEVR 119
Query: 121 YEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRM 180
YEHLN+E EA++ S+ALPSF T V E FN L I S+KKH+TILKDVSGIIKP RM
Sbjct: 120 YEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHISTSKKKHVTILKDVSGIIKPRRM 179
Query: 181 TLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240
TLLLGPP+SGKTTLLLAL+GKLD +LKVSGRVTYNGH++ EFVP+RTAAYISQHD HIGE
Sbjct: 180 TLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGE 239
Query: 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTVRETLAFSARCQGVGSRY++L+EL+RRE A IKPDPD+DVYMKA ATEGQE++++TD
Sbjct: 240 MTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESSLVTD 299
Query: 301 YYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGL++CADTMVGDEM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTTF
Sbjct: 300 YTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTF 359
Query: 361 QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMG 420
QIV+ L+Q+VHI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FFESMG
Sbjct: 360 QIVSFLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMG 419
Query: 421 FKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480
F+CP+RKGVADFLQEVTS+KDQ QYW +++PYRFVTV +F+EAFQSFH+G K+ +EL
Sbjct: 420 FRCPERKGVADFLQEVTSKKDQAQYWARRDQPYRFVTVTQFSEAFQSFHIGGKLGEELAV 479
Query: 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTL 540
PFDK+KSH AALTT+ YG K+ELLK +SRE LLMKRNSFVYIFKL Q+S +AL MTL
Sbjct: 480 PFDKTKSHPAALTTKKYGINKKELLKANLSREYLLMKRNSFVYIFKLCQLSIMALMTMTL 539
Query: 541 FLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT++H++++ D G+YAGALFF M+MFNG+AEISMTIAKLPVFYKQRD F+P WAY
Sbjct: 540 FLRTELHRNNMDDAGLYAGALFFTLVMIMFNGMAEISMTIAKLPVFYKQRDLLFYPSWAY 599
Query: 601 AIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAAT 660
AIPSWILKIP++ LEVAVWVFLTYYVIG DPN GR FKQYL+ L + QMASALFR IAA
Sbjct: 600 AIPSWILKIPVTLLEVAVWVFLTYYVIGFDPNVGRLFKQYLILLFIGQMASALFRAIAAL 659
Query: 661 GRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYS 702
GR+M+V+NTF DIK WW W YW SP+ Y Q A++ NEFL S
Sbjct: 660 GRNMIVSNTFGAFAVLTFLTLGGFVMAKSDIKNWWIWGYWISPLMYGQTALMVNEFLSNS 719
Query: 703 WKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKP 762
W NS ++GV+ L+SRGF + AYWYWLGLGA+ GF+LLFN+ F+ A+ L +KP
Sbjct: 720 WH----NSSRNLGVEYLESRGFPSSAYWYWLGLGAMAGFVLLFNVMFSAALEILGPFDKP 775
Query: 763 RAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMIL 822
+A I EE N+ V+L R ES SGR S + SH KK+GM+L
Sbjct: 776 QATIAEEESPNEV---TVAEVEL-PRIES----SGRGGSV-------VESSHGKKKGMVL 820
Query: 823 PFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTT 882
PFEPHS+TFDEVVYSVDMPQEMK QGV ED+LVLL G+SGAFRPGVLTALMGVSGAGKTT
Sbjct: 821 PFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTT 880
Query: 883 LMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLR 942
LMDVL+GRKTGGYI GNI ISGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAWLR
Sbjct: 881 LMDVLAGRKTGGYIDGNIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLR 940
Query: 943 LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1002
LP VDS+TRKMFIEEVMELVEL PL SLVGLPGVSGLSTEQRKRLTIAVELVANPSII
Sbjct: 941 LPSSVDSQTRKMFIEEVMELVELNPLRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1000
Query: 1003 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062
FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGGQEIY
Sbjct: 1001 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1060
Query: 1063 VGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELY 1122
VGPLGRHS LI YFE+I GV KIKDGYNPATWMLEVT S+QE++LGVDF D+++ S+LY
Sbjct: 1061 VGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTTSAQELSLGVDFTDLYKNSDLY 1120
Query: 1123 RRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTA 1182
RRNK LI+EL +P PGSKDLYFPTQYSQS Q ACLWKQ WSYWRNP YTAVRFFFT
Sbjct: 1121 RRNKQLIQELGQPAPGSKDLYFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTT 1180
Query: 1183 FIAVLLGSLFWDMGSK 1198
FIA++ G++FWD+GS+
Sbjct: 1181 FIALMFGTMFWDLGSR 1196
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550580|ref|XP_003543663.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1848 bits (4787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 893/1218 (73%), Positives = 1020/1218 (83%), Gaps = 42/1218 (3%)
Query: 1 MEGSHDSYLASTSLRGNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGL 60
MEGS D Y AS SLR + + WR S V FS+S REEDDEEALKWAALEKLPTYNRLRKGL
Sbjct: 1 MEGS-DIYRASNSLRRSSTAWRNSGVEVFSRSSREEDDEEALKWAALEKLPTYNRLRKGL 59
Query: 61 LTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVR 120
LT S G A E+DVS+LG Q+R +L+ +LVKV E DNE+FLLKLK RIDRVG+D+P +EVR
Sbjct: 60 LTASHGVANEIDVSDLGTQERHKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEVR 119
Query: 121 YEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRM 180
YEHLN+E EA++ S+ALPSF T + E FN L I S+KKH+TILKDVSGIIKP RM
Sbjct: 120 YEHLNIEAEAFVGSRALPSFINSVTNIIEGFFNLLHITTSKKKHVTILKDVSGIIKPRRM 179
Query: 181 TLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240
TLLLGPP+SGKTTLLLAL+GKLD +LKVSGRVTYNGH++ EFVP+RTAAYISQHD HIGE
Sbjct: 180 TLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGE 239
Query: 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTVRETLAFSARCQGVGSRY++L+EL+RRE A IKPDPD+DVYMKA ATEGQE++++TD
Sbjct: 240 MTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESSIVTD 299
Query: 301 YYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGL++CADTMVGDEM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTTF
Sbjct: 300 YTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTF 359
Query: 361 QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMG 420
QIVN L+Q+VHI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FFESMG
Sbjct: 360 QIVNSLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMG 419
Query: 421 FKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480
F+CP+RKGVADFLQEVTS+KDQ QYW +++PYRFV V +FAEAFQSFH+G+K+ +EL
Sbjct: 420 FRCPERKGVADFLQEVTSKKDQAQYWARRDQPYRFVKVTQFAEAFQSFHIGRKLGEELVV 479
Query: 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTL 540
PFDK+KSH AALTT+ YG K+ELLK +SRE LLMKRNSFVYIFKL Q+S +AL MTL
Sbjct: 480 PFDKTKSHPAALTTKKYGINKKELLKANLSREYLLMKRNSFVYIFKLCQLSIMALMTMTL 539
Query: 541 FLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT++H++++ D G+Y+GALFF M+MFNG+AEISMTIAKLPVFYKQRD F+P WAY
Sbjct: 540 FLRTELHRNNMDDAGLYSGALFFTLIMIMFNGMAEISMTIAKLPVFYKQRDLLFYPSWAY 599
Query: 601 AIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAAT 660
AIPSWILKIP++ LEVAVWVFLTYYVIG DPN GRFFKQYL+ L + QMASALFR IAA
Sbjct: 600 AIPSWILKIPVTLLEVAVWVFLTYYVIGFDPNVGRFFKQYLILLFIGQMASALFRAIAAL 659
Query: 661 GRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYS 702
GR+M+V+NTF DIK WW W YW SP+ Y QNA++ NEFL S
Sbjct: 660 GRNMIVSNTFGAFAVLTFLTLGGYVMSKNDIKNWWIWGYWISPLMYGQNALMVNEFLSNS 719
Query: 703 WKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKP 762
W N+ ++GV+ L+SRGF + +YWYWLGLGA+ GF+LLFN+ F+ A+ L +KP
Sbjct: 720 WH----NTSRNLGVEYLESRGFPSSSYWYWLGLGAMAGFVLLFNVMFSAALEILGPFDKP 775
Query: 763 RAVITEESESNKQDNRIRGTVQLS--ARGESGEDISGRNSSSKSLILTEAQGSHPKKRGM 820
+A ITEE N+ GTV R ES SGR S + SH KK+GM
Sbjct: 776 QATITEEESPNE------GTVAEVELPRIES----SGRGDSV-------VESSHGKKKGM 818
Query: 821 ILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880
+LPFEPHS+TFDEV+YSVDMPQEMK QGV ED+LVLL G+SGAFRPGVLTALMGVSGAGK
Sbjct: 819 VLPFEPHSITFDEVIYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGK 878
Query: 881 TTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAW 940
TTLMDVL+GRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAW
Sbjct: 879 TTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAW 938
Query: 941 LRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1000
LRLP VDS+TRKMFIEEVMELVEL PL SLVGLPGVSGLSTEQRKRLTIAVELVANPS
Sbjct: 939 LRLPSGVDSKTRKMFIEEVMELVELNPLRNSLVGLPGVSGLSTEQRKRLTIAVELVANPS 998
Query: 1001 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060
IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGGQE
Sbjct: 999 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1058
Query: 1061 IYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSE 1120
IYVGPLGRHS LI YFE+I GV KIKDGYNPATWMLEVT S+QE++LGVDF D+++ S+
Sbjct: 1059 IYVGPLGRHSTHLIKYFESIGGVSKIKDGYNPATWMLEVTTSAQELSLGVDFTDLYKNSD 1118
Query: 1121 LYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFF 1180
LYRRNK LI+EL +P PGSKDLYFPTQYSQS Q ACLWKQ WSYWRNP YTAVRFFF
Sbjct: 1119 LYRRNKQLIQELGQPAPGSKDLYFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFF 1178
Query: 1181 TAFIAVLLGSLFWDMGSK 1198
T FIA++ G++FWD+GS+
Sbjct: 1179 TTFIALMFGTMFWDLGSR 1196
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1848 bits (4786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 892/1217 (73%), Positives = 1018/1217 (83%), Gaps = 39/1217 (3%)
Query: 1 MEGSHDSYLASTSLRGNISR-WRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKG 59
MEGS D Y AS SLR S WR S V AFS+S REEDDEEALKWAALEKLPTYNRLRKG
Sbjct: 1 MEGS-DIYRASNSLRSRSSTVWRNSGVEAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
Query: 60 LLTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEV 119
LLT S G A E+DVS+LG+Q+RQ+L+ +LVKV E DNE+FLLKLK RIDRVG+D+P +EV
Sbjct: 60 LLTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEV 119
Query: 120 RYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGR 179
RYEHLN+E EA++ S+ALPSF T V E FN L + S+KKH+TILKDVSGIIKP R
Sbjct: 120 RYEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKPRR 179
Query: 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIG 239
MTLLLGPP+SGKTTLLLAL+GKLD +LKVSGRVTYNGH++ EFVP+RTAAYISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIG 239
Query: 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVIT 299
EMTVRETLAFSARCQGVGSRY++L+EL+RRE A IKPDPD+DVYMKA ATEGQE+N++T
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVT 299
Query: 300 DYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGL++CADTMVGDEM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 360 FQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
FQIV+ L+ +VHI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FFESM
Sbjct: 360 FQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESM 419
Query: 420 GFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELR 479
GF+CP+RKGVADFLQEVTS+KDQ QYW +++PYRFVTV +FAEAFQSFH+G K+ +EL
Sbjct: 420 GFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELT 479
Query: 480 TPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMT 539
PFD++KSH AALTT+ YG K+ELLK SRE LLMKRNSFVY+FKL+Q+ +AL MT
Sbjct: 480 VPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMT 539
Query: 540 LFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWA 599
LFLRT+MH ++ D G+YAGA+FF VMFNGLAEISMTIAKLPVFYKQR+ F+P WA
Sbjct: 540 LFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWA 599
Query: 600 YAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAA 659
YAIPSWILKIP++ +EVAVWVFLTYYVIG DPN GRFFKQYL+ L V+QMAS LFR IAA
Sbjct: 600 YAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAA 659
Query: 660 TGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGY 701
GR+M+VANTF DIK WW W YW SP+ Y QNA++ NEFL
Sbjct: 660 LGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSN 719
Query: 702 SWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEK 761
SW T N +GV+ L+SR FF +YWYWLGLGAL GF+ LFN+ F +A+ FL +K
Sbjct: 720 SWHNATHN----LGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDK 775
Query: 762 PRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMI 821
P+A ITE+ SN+ GT+ + ++ G SS + L E+ SH KK+GM+
Sbjct: 776 PQATITEDESSNE------GTL-------ADIELPGIESSGRGDSLVES--SHGKKKGMV 820
Query: 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 881
LPFEPHS+TFDEVVYSVDMPQEMK QGV ED+LVLL G+SGAFRPGVLTALMGVSGAGKT
Sbjct: 821 LPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKT 880
Query: 882 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 941
TLMDVL+GRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAWL
Sbjct: 881 TLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWL 940
Query: 942 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001
RLP VDS+TRKMFIEEVMELVEL P+ SLVGLPGVSGLSTEQRKRLTIAVELVANPSI
Sbjct: 941 RLPSSVDSKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1000
Query: 1002 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGGQEI
Sbjct: 1001 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1060
Query: 1062 YVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSEL 1121
YVGPLGRHS LI YFE+I GV KIKDGYNPATWMLEVTA++QE++LGVDF D+++ S+L
Sbjct: 1061 YVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNSDL 1120
Query: 1122 YRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFT 1181
YRRNK LI+EL +P PGSKDL+FPTQYSQS Q ACLWKQ WSYWRNP YTAVRFFFT
Sbjct: 1121 YRRNKQLIQELGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFT 1180
Query: 1182 AFIAVLLGSLFWDMGSK 1198
FIA++ G++FWD+G K
Sbjct: 1181 TFIALMFGTIFWDLGGK 1197
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482993|ref|XP_002285178.2| PREDICTED: pleiotropic drug resistance protein 1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1847 bits (4785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1210 (72%), Positives = 1017/1210 (84%), Gaps = 33/1210 (2%)
Query: 8 YLASTSLRGNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGE 67
Y A+ SLR N S WR+S FS+S R+EDDEEALKWAALEKLPTYNRLRKGLL S+G
Sbjct: 7 YRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLMGSQGA 66
Query: 68 AFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVE 127
A EVDV NLG Q++Q L+ +LVK+ E DNEKFLL+L++RI+RVGI +P++EVR+EHL ++
Sbjct: 67 ASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFEHLTID 126
Query: 128 GEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPP 187
EA++ S+ALPSF F ED L ILPSR++ TIL DVSGIIKP RMTLLLGPP
Sbjct: 127 AEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTLLLGPP 186
Query: 188 ASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247
+SGKTTLLLAL+GKLD +LKV+GRVTYNGH M EFVP+RTAAYISQHD HIGEMTVRETL
Sbjct: 187 SSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMTVRETL 246
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
AFSARCQGVG RY++L EL+RRE A IKPDPD+DV+MKA ATEGQ+ NV+TDY LK+LG
Sbjct: 247 AFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILG 306
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLK 367
L++CADTMVGDEMIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVNCLK
Sbjct: 307 LDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNCLK 366
Query: 368 QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRK 427
Q +HI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFFES GF+CP+RK
Sbjct: 367 QTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFRCPERK 426
Query: 428 GVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKS 487
GVADFLQEVTS+KDQ+QYW KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+DK+KS
Sbjct: 427 GVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPYDKTKS 486
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
H AALTT+ YG K+ELL +SRE LLMKRNSFVY+FKLTQ++ +A+ MTLFLRT+MH
Sbjct: 487 HPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFLRTEMH 546
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
K+S+ DG IY GALFF M+MFNG+AE++M IAKLPVFYKQRD F+P WAYA+P+WIL
Sbjct: 547 KNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYALPTWIL 606
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
KIPI+F+EV VWVF+TYYVIG DPN R F+QYLL L VNQMAS LFRLIA+ GR+M+V+
Sbjct: 607 KIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGRNMIVS 666
Query: 668 NTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN 709
NTF +D+KKWW W YWCSP+ YAQNAIV NEFLG+SWKK
Sbjct: 667 NTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWKKNVTG 726
Query: 710 SYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEE 769
S ES+GV VL +RGFF AYWYW+G GALFGFILLFN G+T+ + FLN +KP+AVI EE
Sbjct: 727 STESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQAVIVEE 786
Query: 770 SESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGS-HPKKRGMILPFEPHS 828
S++ + +I ++S RNSS T G+ H KK+GM+LPF+P+S
Sbjct: 787 SDNAETGGQI--------------ELSQRNSSIDQAASTAVAGANHNKKKGMVLPFQPYS 832
Query: 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS 888
+TFD++ YSVDMP+EMK QGV+EDKL LL G+SGAFRPGVLTALMGVSGAGKTTLMDVL+
Sbjct: 833 ITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 892
Query: 889 GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVD 948
GRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAWLRLP +V
Sbjct: 893 GRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSDVK 952
Query: 949 SETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008
SETR+MFIEEVMELVEL PL +LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 953 SETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1012
Query: 1009 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGR 1068
SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL L+KRGGQEIYVGPLGR
Sbjct: 1013 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGR 1072
Query: 1069 HSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKAL 1128
+SC LI+YFE I GV KIKDGYNPATWMLE T ++QE LGVDF +I++ S+LYRRNK L
Sbjct: 1073 YSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFTEIYKNSDLYRRNKDL 1132
Query: 1129 IEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLL 1188
I+ELS+P PG+KDLYF TQ+SQ FTQF+ACLWKQ WSYWRNP YTAVRF FT FIA++
Sbjct: 1133 IKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALMF 1192
Query: 1189 GSLFWDMGSK 1198
G++FWD+G+K
Sbjct: 1193 GTMFWDLGTK 1202
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482989|ref|XP_003632875.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1843 bits (4774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 875/1209 (72%), Positives = 1017/1209 (84%), Gaps = 35/1209 (2%)
Query: 8 YLASTSLRGNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGE 67
Y A+ SLR N S WR+S FS+S R+EDDEEALKWAALEKLPTYNRLRKGLL S+G
Sbjct: 7 YRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLMGSQGA 66
Query: 68 AFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVE 127
A EVDV NLG Q++Q L+ +LVK+ E DNEKFLL+L++RI+RVGI +P++EVR+EHL ++
Sbjct: 67 ASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFEHLTID 126
Query: 128 GEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPP 187
EA++ S+ALPSF F ED L ILPSR++ TIL DVSGIIKP RMTLLLGPP
Sbjct: 127 AEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTLLLGPP 186
Query: 188 ASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247
+SGKTTLLLAL+GKLD +LKV+GRVTYNGH M EFVP+RTAAYISQHD HIGEMTVRETL
Sbjct: 187 SSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMTVRETL 246
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
AFSARCQGVG RY++L EL+RRE A IKPDPD+DV+MKA ATEGQ+ NV+TDY LK+LG
Sbjct: 247 AFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILG 306
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLK 367
L++CADTMVGDEMIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVNCLK
Sbjct: 307 LDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNCLK 366
Query: 368 QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRK 427
Q +HI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFFES GF+CP+RK
Sbjct: 367 QTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFRCPERK 426
Query: 428 GVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKS 487
GVADFLQEVTS+KDQ+QYW KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+DK+KS
Sbjct: 427 GVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPYDKTKS 486
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
H AALTT+ YG K+ELL +SRE LLMKRNSFVY+FKLTQ++ +A+ MTLFLRT+MH
Sbjct: 487 HPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFLRTEMH 546
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
K+S+ DG IY GALFF M+MFNG+AE++M IAKLPVFYKQRD F+P WAYA+P+WIL
Sbjct: 547 KNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYALPTWIL 606
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
KIPI+F+EV VWVF+TYYVIG DPN R F+QYLL L VNQMAS LFRLIA+ GR+M+V+
Sbjct: 607 KIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGRNMIVS 666
Query: 668 NTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN 709
NTF +D+KKWW W YWCSP+ YAQNAIV NEFLG+SWKK
Sbjct: 667 NTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWKKNVTG 726
Query: 710 SYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEE 769
S ES+GV VL +RGFF AYWYW+G GALFGFILLFN G+T+ + FLN +KP+AVI EE
Sbjct: 727 STESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQAVIVEE 786
Query: 770 SESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSL 829
S++ + +I ++S RN+ + + A +H KK+GM+LPF+P+S+
Sbjct: 787 SDNAETGGQI--------------ELSQRNTVREEAV---AGANHNKKKGMVLPFQPYSI 829
Query: 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 889
TFD++ YSVDMP+EMK QGV+EDKL LL G+SGAFRPGVLTALMGVSGAGKTTLMDVL+G
Sbjct: 830 TFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 889
Query: 890 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDS 949
RKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAWLRLP +V S
Sbjct: 890 RKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSDVKS 949
Query: 950 ETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1009
ETR+MFIEEVMELVEL PL +LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS
Sbjct: 950 ETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1009
Query: 1010 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRH 1069
GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL L+KRGGQEIYVGPLGR+
Sbjct: 1010 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRY 1069
Query: 1070 SCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALI 1129
SC LI+YFE I GV KIKDGYNPATWMLE T ++QE LGVDF +I++ S+LYRRNK LI
Sbjct: 1070 SCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFTEIYKNSDLYRRNKDLI 1129
Query: 1130 EELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLG 1189
+ELS+P PG+KDLYF TQ+SQ FTQF+ACLWKQ WSYWRNP YTAVRF FT FIA++ G
Sbjct: 1130 KELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALMFG 1189
Query: 1190 SLFWDMGSK 1198
++FWD+G+K
Sbjct: 1190 TMFWDLGTK 1198
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1838 bits (4762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 893/1240 (72%), Positives = 1022/1240 (82%), Gaps = 45/1240 (3%)
Query: 8 YLASTSLRGNISR-WRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRG 66
Y A SLR + S WR S FS+S R+EDDEEALKWAALEKLPTYNR+RKGLL S G
Sbjct: 7 YRAGGSLRKDSSSIWRNSGEEVFSRSSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAG 66
Query: 67 EAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNV 126
EA EVD+ NLG Q+++ L+ +LVK+ E DNEKFLLKL++RIDRVGIDLP++EVR+EHL +
Sbjct: 67 EASEVDIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTI 126
Query: 127 EGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGP 186
+ EA++ S+ALPSF EDI N L ILPSRKK TIL DVSGIIKP RMTLLLGP
Sbjct: 127 DAEAHVGSRALPSFINSAFNQIEDILNTLRILPSRKKKXTILHDVSGIIKPRRMTLLLGP 186
Query: 187 PASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246
P+SGKTTLLLAL+GKLDSSLKV+G+VTYNGH M EFVP+RTA YISQHD HIGEMTVRET
Sbjct: 187 PSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRET 246
Query: 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK-----------------AIA 289
LAFSARCQGVG RY++L EL+RRE A IKPDPDIDV+MK A+A
Sbjct: 247 LAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKEQNLLSLEFLKVLIGLMAVA 306
Query: 290 TEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDE 349
TEGQ+ NVITDY LK+LGLEVCADT+VGD+MIRGISGG+RKRVTTGEM+VGP+ ALFMDE
Sbjct: 307 TEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDE 366
Query: 350 ISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPR 409
ISTGLDSSTT+QIVN L+Q +HI +GTA+ISLLQPAPETYDLFDDIILLSD QIVYQGPR
Sbjct: 367 ISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPR 426
Query: 410 ELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFH 469
E VL+FFESMGF+CP+RKGVADFLQEVTSRKDQ+QYW K++PY FVTV+EFAEAFQSFH
Sbjct: 427 EDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFH 486
Query: 470 VGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQ 529
+G+K+ EL TPFDK+KSH AAL TE YG K+ELL CISRE LLMKRNSFVYIFKLTQ
Sbjct: 487 IGRKLGHELATPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQ 546
Query: 530 ISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQ 589
+ +A MT+FLRT+MHK+S DG IY GALFF M+MFNG++E++MTIAKLPVFYKQ
Sbjct: 547 LIIMAAISMTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQ 606
Query: 590 RDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQM 649
R F+P WAYA+PSWILKIPI+F+EVAVWVF++YYVIG DPN GR FKQYLL + VNQM
Sbjct: 607 RGLLFYPAWAYALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQM 666
Query: 650 ASALFRLIAATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQN 691
ASALFR IAA GR+M+VANTF E++KKWW W YW SP+ YAQN
Sbjct: 667 ASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQN 726
Query: 692 AIVANEFLGYSW-KKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFT 750
AIV NEFLG SW K + +S ES+GV VLKSRGFF AYWYW+G GAL GFIL+FN +T
Sbjct: 727 AIVVNEFLGKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYT 786
Query: 751 MAITFLNQLEKPRAVITEESESNKQDNRI------RGTVQLSARGESGEDISGRNSSSKS 804
+A+T+LN EKP+AVITEESE++K +I RG++ +A E E+I SS+ S
Sbjct: 787 VALTYLNAFEKPQAVITEESENSKTGGKIELSSHRRGSIDQTASTERREEIGRSISSTSS 846
Query: 805 LILTEA--QGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSG 862
+ EA + K+GM+LPF+P S+TF+++ YSVDMP+EMK QGVLED+L LL G+SG
Sbjct: 847 SVRAEAIAEARRNNKKGMVLPFQPLSITFEDIRYSVDMPEEMKSQGVLEDRLELLKGVSG 906
Query: 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQN 922
AFRPGVLTALMGVSGAGKTTLMDVL+GRKTGGYI GNI ISGYPKKQETFARI GYCEQN
Sbjct: 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFARIXGYCEQN 966
Query: 923 DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982
DIHSP VT++ESLLYSAWLRLP +VDS+TRKMFIEEVMELVEL PL SLVGLPGV+GLS
Sbjct: 967 DIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLS 1026
Query: 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP I
Sbjct: 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1086
Query: 1043 DIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTAS 1102
DIF+AFDEL L+KRGGQEIYVGPLGRHS LI YFE I GV KIK GYNPATWMLEVT S
Sbjct: 1087 DIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFEGIEGVSKIKGGYNPATWMLEVTTS 1146
Query: 1103 SQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWK 1162
+QE LGVDF +I++ S+LYRRNK LI+ELS+P PGSKDLYFPTQYSQS FTQ MACLWK
Sbjct: 1147 AQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWK 1206
Query: 1163 QHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTLKE 1202
Q SYWRNP YTAVRFFFT FIA++ G++FWD+G+K K+
Sbjct: 1207 QRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQ 1246
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147795710|emb|CAN61052.1| hypothetical protein VITISV_026320 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1838 bits (4761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 879/1227 (71%), Positives = 1020/1227 (83%), Gaps = 36/1227 (2%)
Query: 8 YLASTSLRGNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGE 67
Y A+ SLR N S WR+S FS+S R+EDDEEALKWAALEKLPTYNRLRKGLL S+G
Sbjct: 41 YXAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLMGSQGA 100
Query: 68 AFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVE 127
A EVDV NLG Q++Q L+ +LVK+ E DNEKFLL+L++RI+RVGI +P++EVR+EHL ++
Sbjct: 101 ASEVDVDNLGFQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFEHLTID 160
Query: 128 GEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPP 187
EA++ S+ALPSF F ED L IL SR++ TIL DVSGIIKP RMTLLLGPP
Sbjct: 161 AEAFIGSRALPSFHNFMFNKIEDALTGLRILRSRRRKFTILHDVSGIIKPQRMTLLLGPP 220
Query: 188 ASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247
+SGKTTLLLAL+GKLD +LKV+GRVTYNGH M EFVP+RTAAYISQHD HIGEMTVRETL
Sbjct: 221 SSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMTVRETL 280
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
AFSARCQGVG RY++L EL+RRE A IKPDPD+DV+MKA ATEGQ+ NV+TDY LK+LG
Sbjct: 281 AFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILG 340
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLK 367
L++CADTMVGDEMIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVNCLK
Sbjct: 341 LDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNCLK 400
Query: 368 QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRK 427
Q +HI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFFES GF+CP+RK
Sbjct: 401 QTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFRCPERK 460
Query: 428 GVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKS 487
GVADFLQEVTS+KDQ+QYW KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+DK+KS
Sbjct: 461 GVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPYDKTKS 520
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
H AALTT+ YG K+ELL +SRE LLMKRNSFVY+FKLTQ++ +A+ MTLFLRT+MH
Sbjct: 521 HPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFLRTEMH 580
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
K+S+ DG IY GALFF M+MFNG+AE++M IAKLPVFYKQRD F+P WAYA+P+WIL
Sbjct: 581 KNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYALPTWIL 640
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
KIPI+F+EV VWVF+TYYVIG DPN R F+QYLL L VNQMAS LFRLIA+ GR+M+V+
Sbjct: 641 KIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASXGRNMIVS 700
Query: 668 NTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN 709
NTF +D+KKWW W YWCSP+ YAQNAIV NEFLG+SWKK
Sbjct: 701 NTFGAFVLLMLLALGGXILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWKKNVTG 760
Query: 710 SYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQ----------- 758
S ES+GV VL +RGFF AYWYW+G GALFGFILLFN G+T+ + FLN+
Sbjct: 761 STESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNRGYLFLLCIETS 820
Query: 759 LEKPRAVITEESESNKQDNRI-----RGTVQLSARGESGEDISGRNSSSKSLILTE--AQ 811
+KP+AVI EES++ +I ++ +A E GE+I SS+ S + E A
Sbjct: 821 FDKPQAVIVEESDNAXTGGQIELSQRNSSIDQAASTERGEEIGRSISSTSSAVREEAVAG 880
Query: 812 GSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTA 871
+H KK+GM+LPF+P+S+TFD++ YSVDMP+EMK QGV+EDKL LL G+SGAFRPGVLTA
Sbjct: 881 ANHNKKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTA 940
Query: 872 LMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 931
LMGVSGAGKTTLMDVL+GRKTGGYI GNI ISGYPKKQETFARISGYCEQNDIHSP VTV
Sbjct: 941 LMGVSGAGKTTLMDVLAGRKTGGYIEGNIXISGYPKKQETFARISGYCEQNDIHSPHVTV 1000
Query: 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTI 991
YESLLYSAWLRLP +V SETR+MFIEEVMELVEL PL +LVGLPGV GLSTEQRKRLTI
Sbjct: 1001 YESLLYSAWLRLPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVXGLSTEQRKRLTI 1060
Query: 992 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051
AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL
Sbjct: 1061 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1120
Query: 1052 FLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVD 1111
L+KRGGQEIYVGPLGR+SC LI+YFE I GV KIKDGYNPATWMLE T ++QE LGVD
Sbjct: 1121 LLLKRGGQEIYVGPLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVD 1180
Query: 1112 FNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNP 1171
F +I++ S+LYRRNK LI+ELS+P PG+KDLYF TQ+SQ FTQF ACLWKQ WSYWRNP
Sbjct: 1181 FTEIYKNSDLYRRNKDLIKELSQPPPGTKDLYFXTQFSQPFFTQFRACLWKQRWSYWRNP 1240
Query: 1172 QYTAVRFFFTAFIAVLLGSLFWDMGSK 1198
YTAVRF FT FIA+L G++FWD+G+K
Sbjct: 1241 PYTAVRFLFTTFIALLFGTMFWDLGTK 1267
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1206 | ||||||
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.965 | 0.819 | 0.537 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.554 | 0.470 | 0.638 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.549 | 0.456 | 0.575 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.549 | 0.455 | 0.563 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.529 | 0.442 | 0.580 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.544 | 0.447 | 0.554 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.528 | 0.449 | 0.553 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.526 | 0.445 | 0.493 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.966 | 0.803 | 0.504 | 1.5e-310 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.945 | 0.806 | 0.503 | 2.7e-306 |
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3377 (1193.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 645/1200 (53%), Positives = 866/1200 (72%)
Query: 21 WRTSSVGAFSKS--LREE-DDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFEVDVSNLG 77
W S+ AFS+S ++E +DEE L+WAAL++LPTY+R+R+G+ GE E+ + NL
Sbjct: 2 WN-SAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLE 60
Query: 78 LQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKAL 137
+++ L+++LV E D E+F +++ R D V + PK+EVR+++L VE ++ S+AL
Sbjct: 61 ASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRAL 120
Query: 138 PSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPXXXXXXXXXX 197
P+ F + E + + ++ ++ LTIL +SG+I+P R+TLLLGPP
Sbjct: 121 PTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 198 XXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVG 257
SG++TYNG+D+ E + RT+AY+SQ D H+ EMTVR+TL F+ RCQGVG
Sbjct: 181 LAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVG 240
Query: 258 SRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317
+Y++L ELARRE AGI PD D+D++MK++A G E +++ +Y +K+LGL+ CADT+VG
Sbjct: 241 FKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVG 300
Query: 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
DEMI+GISGG++KR+TTGE++VGPA LFMDEIS GLDSSTT QI+ ++ H GT
Sbjct: 301 DEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTT 360
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT 437
VISLLQP+PETY+LFDD+IL+S+GQI+YQGPR+ VL+FF S+GF CP RK VADFLQEVT
Sbjct: 361 VISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVT 420
Query: 438 SRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVY 497
S+KDQ+QYW+ +PYR+V +FAEAF+S+ G+K++ +L PFDK +H AAL+T Y
Sbjct: 421 SKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQY 480
Query: 498 GAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIY 557
G K ELLK + + LMK+N+F+Y+FK Q+ VAL MT+F RT MH +++ DG IY
Sbjct: 481 GVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIY 540
Query: 558 AGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVA 617
G+L+F+ +++FNG E+ M +AKLPV YK RD F+P WAY +PSW+L IP S +E A
Sbjct: 541 LGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESA 600
Query: 618 VWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF------- 670
WV +TYY IG DP RF +Q+LL+ +++QM+ LFR++ + GR M+VANTF
Sbjct: 601 TWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLV 660
Query: 671 -----------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN-SYESIGVQV 718
+ I WW W YW SP+ YAQNA NEFLG++W+K N + +S+G+ +
Sbjct: 661 VMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLAL 720
Query: 719 LKSRGFFAHAYWYWXXXXXXXXXXXXXXXXXTMAITFLNQLEKPRAVITEESESNKQDNR 778
LK R F+ YWYW T+ + LN K +AV++ E E ++++ +
Sbjct: 721 LKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSRE-ELDEREKK 779
Query: 779 IRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSV 838
+G + E E + ++S S G + K RGM+LPF+P SL+F + Y V
Sbjct: 780 RKGDEFVV---ELREYL--QHSGS-------IHGKYFKNRGMVLPFQPLSLSFSNINYYV 827
Query: 839 DMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITG 898
D+P +K QG+LED+L LL ++GAFRPGVLTAL+GVSGAGKTTLMDVL+GRKTGG I G
Sbjct: 828 DVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEG 887
Query: 899 NITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE 958
++ ISG+PK+QETFARISGYCEQND+HSP +TV ESLL+SA LRLP ++DSET++ F+ E
Sbjct: 888 DVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHE 947
Query: 959 VMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
VMELVEL L +LVGLPGV GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAI
Sbjct: 948 VMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1007
Query: 1019 VMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFE 1078
VMRTVRN V+TGRT+VCTIHQP IDIF++FDEL MKRGG+ IY GPLG+ SC+LI YFE
Sbjct: 1008 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFE 1067
Query: 1079 AIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPG 1138
+I GV+KIK G+NPA WML+VTAS++E LGVDF +I+R S L +RNK LIE LSKP+
Sbjct: 1068 SIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNI 1127
Query: 1139 SKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSK 1198
+K++ FPT+YSQS ++QF+ACLWKQ+ SYWRNPQYTAVRFF+T I+++LG++ W GSK
Sbjct: 1128 AKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSK 1187
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2279 (807.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 430/673 (63%), Positives = 534/673 (79%)
Query: 1 MEGSHDSYLASTSLRGNISRWRTSSVGA-FSKSLREEDDEEALKWAALEKLPTYNRLRKG 59
MEG+ + AS S+R N S W+ S FS+S REEDDEEAL+WAALEKLPT++RLRKG
Sbjct: 1 MEGT-SFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKG 59
Query: 60 LLTTSR--GEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKV 117
+LT S G E+D+ LG Q ++L+ +L+KV + ++EK L KLK RIDRVGIDLP +
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 118 EVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKP 177
EVR++HL VE E ++ +ALP+F F + + N L ++P+RKK TIL DVSGI+KP
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKP 179
Query: 178 GRMTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNH 237
GRM LLLGPP +GRVTYNGH M EFVP+RTAAYI Q+D H
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRET A++AR QGVGSRY++LTELARRE EA IKPDPDID++MKA++T G++ NV
Sbjct: 240 IGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNV 299
Query: 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGLEVCADTMVGD+M+RGISGG++KRVTTGEM+VGP+ ALFMDEISTGLDSS
Sbjct: 300 MTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
TT+QIVN L+ +VHI +GTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFFE
Sbjct: 360 TTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477
+MGFKCP RKGVADFLQEVTS+KDQ QYW +++PYRF+ V EFAEAFQSFHVG++I DE
Sbjct: 420 TMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDE 479
Query: 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAF 537
L PFDK+KSH AALTT+ YG G +EL+KT SRE LLMKRNSFVY FK Q+ +A
Sbjct: 480 LALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLT 539
Query: 538 MTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPP 597
MTLF RT+M K + DG +Y GALFF M+MFNG++E+SMTIAKLPVFYKQRD F+P
Sbjct: 540 MTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPA 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLI 657
W Y++P W+LKIPISF+E A+ F+TYYVIG DPN GR FKQY+L + +NQMASALF+++
Sbjct: 600 WVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMV 659
Query: 658 AATGRSMVVANTF 670
AA GR+M+VANTF
Sbjct: 660 AALGRNMIVANTF 672
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2025 (717.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 387/672 (57%), Positives = 502/672 (74%)
Query: 4 SHDSYL--ASTSLRGNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLL 61
SH S AS S R ++ T V F +S R E+D+ L+WAALE+LPTY+RLRKG+L
Sbjct: 22 SHRSLAGAASKSFR-DVFAPPTDDV--FGRSDRREEDDVELRWAALERLPTYDRLRKGML 78
Query: 62 --TTSRGEAF--EVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKV 117
T G+ +VDV+NL ++++ L+ ++K E DNEKFL +L+ R DRVGI++PK+
Sbjct: 79 PQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKI 138
Query: 118 EVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKP 177
EVRYE+L+VEG+ AS+ALP+ E I +LPS+K+ + ILKD+SGIIKP
Sbjct: 139 EVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHLLPSKKRKIEILKDISGIIKP 198
Query: 178 GRMTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNH 237
RMTLLLGPP +SGR+TY GH+ EFVP++T AYISQHD H
Sbjct: 199 SRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLH 258
Query: 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV 297
GEMTVRE+L FS RC GVG+RY+LLTEL+RRE EAGIKPDP+ID +MK+IA GQE ++
Sbjct: 259 FGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSL 318
Query: 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL++CADT+VGD M RGISGG+RKR+TTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 319 VTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSS 378
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
TTFQI ++Q VHI T VISLLQPAPET++LFDDIILLS+GQIVYQG R+ VLEFFE
Sbjct: 379 TTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFE 438
Query: 418 SMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477
MGFKCP+RKG+ADFLQEVTS+KDQ+QYW +E PY +V+V +F+ F SFH GQ+++ E
Sbjct: 439 YMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASE 498
Query: 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAF 537
R P+DK+K+H AAL T+ YG ++L K C RE LLMKRNSFVY+FK QI+ ++L
Sbjct: 499 FRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIA 558
Query: 538 MTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPP 597
MT++ RT+MH ++ DG + GALFF+ +MFNG+AE++ T+ +LPVF+KQRDF F+PP
Sbjct: 559 MTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPP 618
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLI 657
WA+A+P ++LKIP+S +E +W+ LTYY IG P+A RFF+Q L + VNQMA +LFR +
Sbjct: 619 WAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFL 678
Query: 658 AATGRSMVVANT 669
A GR+ V+AN+
Sbjct: 679 GALGRTEVIANS 690
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2012 (713.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 378/671 (56%), Positives = 501/671 (74%)
Query: 4 SHDSYL-ASTSLRGNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLL- 61
SH S + AS S R ++ +T V F +S R E+D+ L+WAA+E+LPT++RLRKG+L
Sbjct: 25 SHRSLVGASKSFR-DVFMPQTDEV--FGRSERREEDDMELRWAAIERLPTFDRLRKGMLP 81
Query: 62 -TTSRG--EAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVE 118
T++ G E ++D++ L + ++ L+ ++ E DNEKFL L+ R DRVGI++PK+E
Sbjct: 82 QTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIE 141
Query: 119 VRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPG 178
VRYE+++VEG+ AS+ALP+ E I + +LPS++K + ILKD+SGI+KP
Sbjct: 142 VRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHLLPSKRKKIQILKDISGIVKPS 201
Query: 179 RMTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNHI 238
RMTLLLGPP +SGR+TY GH+ EFVP++T AYISQHD H
Sbjct: 202 RMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHF 261
Query: 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVI 298
GEMTVRE L FS RC GVGSRY+L++EL+RRE E GIKPDP ID +MK+IA GQE +++
Sbjct: 262 GEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLV 321
Query: 299 TDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSST 358
TDY LK+LGL++CAD + GD M RGISGG++KR+TTGEM+VGPA ALFMDEISTGLDSST
Sbjct: 322 TDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSST 381
Query: 359 TFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFES 418
TFQI ++Q VHI+ T +ISLLQPAPET++LFDDIILLS+GQIVYQGPR+ VLEFFE
Sbjct: 382 TFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEY 441
Query: 419 MGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDEL 478
GF+CP+RKGVADFLQEVTS+KDQ+QYW +E+PY +V+V +F+ F +FH GQK++ E
Sbjct: 442 FGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEF 501
Query: 479 RTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFM 538
R P+DK+K+H AAL T+ YG EL K C RE LLMKRNSFVY+FK QI+ ++L M
Sbjct: 502 RVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITM 561
Query: 539 TLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPW 598
T++LRT+MH ++ DG + GA+FF+ VMFNGLAE++ T+ +LPVFYKQRDF F+PPW
Sbjct: 562 TVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPW 621
Query: 599 AYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIA 658
A+A+P+W+LKIP+S +E +W+ LTYY IG P+A RFF+Q L + VNQMA +LFR +
Sbjct: 622 AFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLG 681
Query: 659 ATGRSMVVANT 669
A GR+ V++N+
Sbjct: 682 AIGRTEVISNS 692
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1961 (695.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 376/648 (58%), Positives = 478/648 (73%)
Query: 30 SKSLREEDDEEALKWAALEKLPTYNRLRKGLLTT-SRGEAF-------EVDVSNLGLQQR 81
+KS+ E DEEALKWA++EKLPTYNRLR L+ + + VDV+ L ++R
Sbjct: 41 TKSVNE--DEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDVTKLDGEER 98
Query: 82 QRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKALPSFT 141
Q+ I+ + KV E DNE+ L KL++RIDRVGI LP VEVRY+HL V+ + Y ++LPS
Sbjct: 99 QKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTGDRSLPSLL 158
Query: 142 KFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPXXXXXXXXXXXXXX 201
+ E +GI ++K LTILKDVSGI+KP RMTLLLGPP
Sbjct: 159 NAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGK 218
Query: 202 XXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYE 261
VSG VTYNG+ + EFVP +T+AYISQ+D H+G MTV+ETL FSARCQGVG+RY+
Sbjct: 219 LDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYD 278
Query: 262 LLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321
LL ELARRE +AGI P+ D+D++MKA A +G ++++ITDY LK+LGL++C DT+VGD+M+
Sbjct: 279 LLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVGDDMM 338
Query: 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
RGISGG++KRVTTGEM+VGP LFMDEISTGLDSSTTFQIV CL+Q VH+ T +ISL
Sbjct: 339 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATVLISL 398
Query: 382 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKD 441
LQPAPET+DLFDDIILLS+GQIVYQGPR+ +LEFFES GFKCP+RKG ADFLQEVTS+KD
Sbjct: 399 LQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVTSKKD 458
Query: 442 QKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGK 501
Q+QYW +PYR++ V EFA +F+ FHVG K+S+EL P+DKSKSH+AAL + Y K
Sbjct: 459 QEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKYSIKK 518
Query: 502 RELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGAL 561
ELLK+C +E +LMKRNSF Y+FK QI +A TL+LRT+MH + D IY G+L
Sbjct: 519 TELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIYVGSL 578
Query: 562 FFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVF 621
FA + MFNGLAE++MTI +LPVFYKQRD F PPW Y +P+++L IPIS E W+
Sbjct: 579 LFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFESTAWMV 638
Query: 622 LTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANT 669
+TYY IG P+A RFFKQ+L+ + QMA+ +FR IA+T R+M +ANT
Sbjct: 639 VTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANT 686
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1943 (689.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 371/669 (55%), Positives = 487/669 (72%)
Query: 13 SLRGNISRWRTSSVGAFSKSLRE----EDDEEALKWAALEKLPTYNRLRKGLLTTS-RGE 67
S+ ++SR + FS R DDEEALKWAA+EKLPTY+RLR L+ +
Sbjct: 20 SISRSVSRASRNIEDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDD 79
Query: 68 AF-------EVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVR 120
+ EVDV+ L + RQ+ I+ + KV E DNE+ L KL++RIDRVGI LP VEVR
Sbjct: 80 VYGNQLMSKEVDVTKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVR 139
Query: 121 YEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRM 180
YEHL ++ + Y +++LP+ + E +GI ++K LTILKD+SG+IKPGRM
Sbjct: 140 YEHLTIKADCYTGNRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRM 199
Query: 181 TLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240
TLLLGPP VSG +TYNG+ + EFVP +T+AYISQ+D H+G
Sbjct: 200 TLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGI 259
Query: 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTV+ETL FSARCQGVG+RY+LL ELARRE +AGI P+ D+D++MKA A +G + +++TD
Sbjct: 260 MTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTD 319
Query: 301 YYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGL++C DT+VGD+M+RGISGG++KRVTTGEM+VGP LFMDEISTGLDSSTTF
Sbjct: 320 YTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTF 379
Query: 361 QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMG 420
QIV CL+Q VH+N T ++SLLQPAPET+DLFDDIIL+S+GQIVYQGPR+ +LEFFES G
Sbjct: 380 QIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFG 439
Query: 421 FKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480
FKCP+RKG ADFLQEVTS+KDQ+QYW + +PY ++ V EFA ++SFHVG K+S+EL
Sbjct: 440 FKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAV 499
Query: 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTL 540
PFDKS+ H+AAL + Y KRELLK+C +E LLM+RN+F Y+FK QI +A TL
Sbjct: 500 PFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTL 559
Query: 541 FLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT+M+ + D +Y GAL F + MFNG AE++M +++LPVFYKQRD F+P W +
Sbjct: 560 FLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTF 619
Query: 601 AIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAAT 660
++P+++L IP S LE W+ +TYY IG P+A RFFKQ+LL + QMA++LFRLIA+
Sbjct: 620 SLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASV 679
Query: 661 GRSMVVANT 669
R+M++ANT
Sbjct: 680 CRTMMIANT 688
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1845 (654.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 354/640 (55%), Positives = 461/640 (72%)
Query: 30 SKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFEVDVSNLGLQQRQRLINKLV 89
S S ++ DEEALKWAALEKLPT+ RLR ++ VDV+ LG+ RQ+ I+ +
Sbjct: 28 SGSTIDDHDEEALKWAALEKLPTFARLRTTIIHPHEDL---VDVTKLGVDDRQKFIDSIF 84
Query: 90 KVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFE 149
KVTE DNEKFL K ++RIDRV I LP VEVR+E + +E ++ +ALP+ + E
Sbjct: 85 KVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALPTLPNAALNIAE 144
Query: 150 DIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPXXXXXXXXXXXXXXXXXXXXVS 209
LG ++ +TIL+DVSGIIKP RMTLLLGPP V+
Sbjct: 145 RGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDQSLKVT 204
Query: 210 GRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARR 269
GRVTYNGH + EFVP++T+AYISQ+D H+G MTV+ETL FSARCQGVG+RY+LL+EL RR
Sbjct: 205 GRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTRYDLLSELVRR 264
Query: 270 ENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGER 329
E +AGI P+P++D++MK+IA ++++ITDY L++LGL++C DT+VGDEMIRGISGG++
Sbjct: 265 EKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGDEMIRGISGGQK 324
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389
KRVTTGEM+VGP LFMDEISTGLDSSTT+QIV CL++ V T ++SLLQPAPET+
Sbjct: 325 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVLMSLLQPAPETF 384
Query: 390 DLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHK 449
+LFDDIILLS+GQIVYQGPR+ VL FFE+ GFKCP RKG ADFLQEVTSRKDQ+QYW
Sbjct: 385 ELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTSRKDQEQYWADS 444
Query: 450 EKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCI 509
+KPY +++V EF++ F++FHVG + +L P+D+ KSH A+L + + K +L K C
Sbjct: 445 KKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHSVPKSQLFKVCW 504
Query: 510 SRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVM 569
RELLLMKRN+F YI K QI +AL T++LRT+M + +DG +Y GAL F+ + M
Sbjct: 505 DRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYIGALMFSMIVNM 564
Query: 570 FNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGC 629
FNG AE+++ I +LPVFYKQRD F PPW +++P+++L IPIS E VWV +TYY+IG
Sbjct: 565 FNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVVWVTITYYMIGF 624
Query: 630 DPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANT 669
P RF K L+ QMA +FR IAAT RSM++ANT
Sbjct: 625 APELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANT 664
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1636 (581.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 320/648 (49%), Positives = 431/648 (66%)
Query: 36 EDDEEALKWAALEKLP-----TYNR-LRKGLLTTSR-----GEAFE-VDVSNLGLQQRQR 83
E DEE L+WAA+ +LP T+N LR+ T G + +DV L R+
Sbjct: 32 EQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDVKKLDRADREM 91
Query: 84 LINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKF 143
L+ + + ++ DN K L +K R+DRVG+++PK+EVR+E+LN+E + ++ALP+
Sbjct: 92 LVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAGTRALPTLVNV 151
Query: 144 YTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPXXXXXXXXXXXXXXXX 203
FE + L I+ RK L ILKD+SGIIKPGRMTLLLGPP
Sbjct: 152 SRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLD 211
Query: 204 XXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYE-L 262
+G +TYNG ++ +F +RT+AYISQ DNHI E+TVRETL F+ARCQG +
Sbjct: 212 KSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGY 271
Query: 263 LTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322
+ +L R E E GI+P +ID +MKA + +G++ +V TDY LKVLGL+VC+DTMVG++M+R
Sbjct: 272 MKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMR 331
Query: 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL 382
G+SGG+RKRVTTGEM VGP LFMDEISTGLDSSTTFQIV C++ VH+ T +++LL
Sbjct: 332 GVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMALL 391
Query: 383 QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQ 442
QPAPET+DLFDD+ILLS+G +VYQGPRE V+ FFES+GF+ P RKGVADFLQEVTS+KDQ
Sbjct: 392 QPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKDQ 451
Query: 443 KQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKR 502
QYW KPY+F+ V + A AF++ G +L PFDK + +AL +
Sbjct: 452 AQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISGW 511
Query: 503 ELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALF 562
E LK C RELLL+KR+ F+Y F+ Q+ V L T+FL+T++H S G Y LF
Sbjct: 512 ENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCLF 571
Query: 563 FATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFL 622
F +MFNG +E+ + I++LPVFYKQRD F P W+++I SW+L++P S LE VW +
Sbjct: 572 FGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSGV 631
Query: 623 TYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF 670
Y+ +G P+AGRFF+ LL +V+QMA LFR++A+ R MV+ANTF
Sbjct: 632 VYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTF 679
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2979 (1053.7 bits), Expect = 1.5e-310, P = 1.5e-310
Identities = 612/1212 (50%), Positives = 814/1212 (67%)
Query: 12 TSLRGNISRWRTSS-VGAFSKS--LREEDDEEALKWAALEKLPTYNRLRKGLLT------ 62
+S R + S +R+SS + + + D E AL+WA +E+LPT R+R LL
Sbjct: 26 SSFRRHTSSFRSSSSIYEVENDGDVNDHDAEYALQWAEIERLPTVKRMRSTLLDDGDESM 85
Query: 63 TSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYE 122
T +G VDV+ LG +R +I KL+K E DN K L K++ RIDRVG++LP +EVRYE
Sbjct: 86 TEKGRRV-VDVTKLGAVERHLMIEKLIKHIENDNLKLLKKIRRRIDRVGMELPTIEVRYE 144
Query: 123 HLNVEGEAYLAS-KALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMT 181
L V E + KALP+ V ++ G K + I+ DV+GIIKPGR+T
Sbjct: 145 SLKVVAECEVVEGKALPTLWNTAKRVLSELVKLTGAKTHEAK-INIINDVNGIIKPGRLT 203
Query: 182 LLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEM 241
LLLGPP SG ++YNGH + EFVP++T+AYISQ+D HI EM
Sbjct: 204 LLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEM 263
Query: 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TVRET+ FSARCQGVGSR +++ E+++RE E GI PD ++D YMKAI+ EG + ++ TDY
Sbjct: 264 TVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDY 323
Query: 302 YLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 361
LK+LGL++CA+ ++GD M RGISGG++KR+TT EM+VGP ALFMDEI+ GLDSST FQ
Sbjct: 324 ILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQ 383
Query: 362 IVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGF 421
IV L+Q HI+S T ++SLLQPAPE+YDLFDDI+L++ G+IVY GPR VL FFE GF
Sbjct: 384 IVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGF 443
Query: 422 KCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTP 481
+CP+RKGVADFLQEV S+KDQ QYW H++ PY FV+VE ++ F+ +G+KI D L P
Sbjct: 444 RCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKP 503
Query: 482 FDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLF 541
+D+SKSH+ AL+ VY EL CISRE LLMKRN FVYIFK Q+ A MT+F
Sbjct: 504 YDRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVF 563
Query: 542 LRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYA 601
+RT+M + G Y ALFFA +++ +G E+SMT +L VFYKQ+ F+P WAYA
Sbjct: 564 IRTRMGI-DIIHGNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYA 622
Query: 602 IPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATG 661
IP+ +LK+P+SF E VW L+YYVIG P A RFFKQ++L AV+ + ++FR +AA
Sbjct: 623 IPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIF 682
Query: 662 RSMVV---ANTFEDIKKWWKWAYWCSPMS---YAQNAIVANEF----LGYSWKKF-TP-- 708
+++V A +F + + + P S + + AN +G S +F P
Sbjct: 683 QTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRW 742
Query: 709 NSYE----SIGVQVLKSRGFFAHAYWYWXXXXXXXXXXXXXXXXXTMAITFLNQLEKPRA 764
N + ++G +L++RG + Y YW T+A+TFL RA
Sbjct: 743 NQMQPNNFTLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRA 802
Query: 765 VITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPF 824
+I+++ S Q GT + S ED S R ++ S + TE + M+LPF
Sbjct: 803 MISQDKLSELQ-----GTEK------STEDSSVRKKTTDSPVKTEEEDK------MVLPF 845
Query: 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM 884
+P ++TF ++ Y VDMP EM+ QG + KL LL+ ++GAFRPG+LTALMGVSGAGKTTL+
Sbjct: 846 KPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLL 905
Query: 885 DVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP 944
DVL+GRKT GYI G+I ISG+PK QETFAR+SGYCEQ DIHSP +TV ES++YSAWLRL
Sbjct: 906 DVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLA 965
Query: 945 PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1004
PE+D+ T+ F+++V+E +EL + SLVG+ GVSGLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 966 PEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFM 1025
Query: 1005 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
DEPT+GLDARAAAIVMR V+N DTGRT+VCTIHQP IDIF+AFDEL L+KRGG+ IY G
Sbjct: 1026 DEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTG 1085
Query: 1065 PLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRR 1124
PLG+HS +I YFE++P + KIKD +NPATWML+V++ S E+ LGVDF I+ S LY+R
Sbjct: 1086 PLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDSALYKR 1145
Query: 1125 NKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFI 1184
N L+++LS+P GS D+ F ++QS + QF + LWK + SYWR+P Y +R T
Sbjct: 1146 NSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMMHTLVS 1205
Query: 1185 AVLLGSLFWDMG 1196
+++ G+LFW G
Sbjct: 1206 SLIFGALFWKQG 1217
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2939 (1039.6 bits), Expect = 2.7e-306, P = 2.7e-306
Identities = 598/1187 (50%), Positives = 798/1187 (67%)
Query: 36 EDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFE-----VDVSNLGLQQRQRLINKLVK 90
++ E AL+WA +++LPT+ RLR L+ GE E VDV+ LG +R +I KL+K
Sbjct: 19 DEAEHALQWAEIQRLPTFKRLRSSLVD-KYGEGTEKGKKVVDVTKLGAMERHLMIEKLIK 77
Query: 91 VTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLAS-KALPSFTKFYTTVFE 149
E DN K L K++ R++RVG++ P +EVRYEHL VE + KALP+ VF
Sbjct: 78 HIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLWNSLKHVFL 137
Query: 150 DIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPXXXXXXXXXXXXXXXXXXXXVS 209
D+ G+ + + ++ IL DVSGII PGR+TLLLGPP
Sbjct: 138 DLLKLSGVR-TNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLENNLKCY 196
Query: 210 GRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARR 269
G ++YNGH + E VP++T+AYISQHD HI EMT RET+ FSARCQGVGSR +++ E+++R
Sbjct: 197 GEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKR 256
Query: 270 ENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGER 329
E + GI PDP+ID YMKAI+ +G + ++ TDY LK+LGL++CA+T+VG+ M RGISGG++
Sbjct: 257 EKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQK 316
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389
KR+TT EM+VGP ALFMDEI+ GLDSST FQI+ L+Q HI + T +SLLQPAPE+Y
Sbjct: 317 KRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPESY 376
Query: 390 DLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHK 449
DLFDDI+L+++G+IVY GPR+ VL+FFE GF+CP+RKGVADFLQEV S+KDQ QYW H+
Sbjct: 377 DLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLHQ 436
Query: 450 EKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCI 509
P+ FV+V+ ++ F+ +G+KI + L P+D SK+H+ AL+ VY K EL + CI
Sbjct: 437 NLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRACI 496
Query: 510 SRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVM 569
SRE LLMKRN FVY+FK Q+ A+ MT+F+RT+M + G Y LFFAT +++
Sbjct: 497 SREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDI-DIIHGNSYMSCLFFATVVLL 555
Query: 570 FNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGC 629
+G+ E+SMT+ +L VFYKQ+ F+P WAYAIP+ +LKIP+SF E VW LTYYVIG
Sbjct: 556 VDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGY 615
Query: 630 DPNAGRFFKQYLLFLAVNQMASALFRLIAA---TGRSMVVANTFEDIKKW----WKWAYW 682
P RFF+Q+++ AV+ + ++FR IAA TG + + A +F + + + Y
Sbjct: 616 TPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYT 675
Query: 683 CSP----MSYAQNAIVANEFLGYSWKKFTPNSYE-------SIGVQVLKSRGFFAHAYWY 731
P + N I E +G S +F ++ ++G +L+SRG Y Y
Sbjct: 676 DMPGWLKWGFWVNPISYAE-IGLSVNEFLAPRWQKMQPTNVTLGRTILESRGLNYDDYMY 734
Query: 732 WXXXXXXXXXXXXXXXXXTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGES 791
W T+A++FL R +I+++ S Q GT S +
Sbjct: 735 WVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQ-----GTKDSSVK--- 786
Query: 792 GEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLE 851
+N S I T P K MILPF+P ++TF ++ Y VD+P EMK QG E
Sbjct: 787 ------KNKPLDSSIKTNED---PGK--MILPFKPLTITFQDLNYYVDVPVEMKGQGYNE 835
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET 911
KL LL+ ++GAFRPGVLTALMG+SGAGKTTL+DVL+GRKT GYI G I ISG+ K QET
Sbjct: 836 KKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQET 895
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
FAR+SGYCEQ DIHSP +TV ESL+YSAWLRL PE++ +T+ F+++V+E +EL+ + +
Sbjct: 896 FARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDA 955
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1031
LVG+ GVSGLSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAAIVMR V+N +TGR
Sbjct: 956 LVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGR 1015
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYN 1091
T+VCTIHQP I IF+AFDEL L+KRGG+ IY GPLG+HS +I YF+ IPGV KI+D YN
Sbjct: 1016 TIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYN 1075
Query: 1092 PATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQS 1151
PATWMLEVT+ S E L +DF I+ S+LY+ N L++ELSKP GS DL+F ++Q+
Sbjct: 1076 PATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQN 1135
Query: 1152 AFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSK 1198
+ QF +CLWK SYWR+P Y +R T + + G LFW+ G K
Sbjct: 1136 WWEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKK 1182
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5893 | 0.9734 | 0.8035 | N/A | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6819 | 0.9734 | 0.8250 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6688 | 0.9751 | 0.8160 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.6954 | 0.9800 | 0.8242 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6900 | 0.9660 | 0.8112 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6852 | 0.9817 | 0.8126 | N/A | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.6721 | 0.9800 | 0.8185 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5305 | 0.9668 | 0.8058 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| ABC | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1433 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1206 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-97 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-70 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-68 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-63 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-55 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-43 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-43 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 8e-40 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-39 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-38 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-37 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-37 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-32 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-31 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 9e-30 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-29 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-27 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-27 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 1e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-24 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-22 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-21 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-21 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-21 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-20 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-20 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-18 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-18 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-17 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 7e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-16 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-16 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-16 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-16 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-15 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-15 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-15 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-15 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-14 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-14 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-14 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-14 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 9e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-13 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-13 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-13 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-13 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-13 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-13 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-13 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-13 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-13 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 6e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 9e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-12 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-12 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 6e-12 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-12 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 7e-12 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-12 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-12 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 7e-12 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 9e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 9e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 9e-12 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 9e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-11 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-11 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-11 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-11 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-11 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-11 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-11 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-11 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-11 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 6e-11 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 8e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 9e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 9e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-10 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-10 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-10 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-10 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-10 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 5e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 5e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 8e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 8e-10 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 9e-10 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-09 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-09 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-09 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-09 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-09 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-09 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 7e-09 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 7e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 8e-09 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 8e-09 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 8e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-08 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-08 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-08 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-08 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-08 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-08 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 7e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 7e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-07 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-07 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-07 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-07 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-07 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-07 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-07 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 6e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-07 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 9e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 9e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 9e-07 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-06 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-06 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-06 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-06 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-06 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-06 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-06 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-06 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 5e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 6e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 6e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 7e-06 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 7e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 7e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 8e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 9e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 9e-06 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 9e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-05 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-05 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-05 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-05 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-05 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-05 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-05 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-05 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-05 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 5e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 5e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-05 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 6e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 8e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 8e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 9e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-05 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 9e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 9e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 9e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 9e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-04 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-04 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-04 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-04 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 7e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 7e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 8e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 8e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 8e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.001 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 0.001 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 0.001 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.001 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 0.001 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 0.001 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 0.001 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.001 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 0.001 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 0.001 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.001 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.001 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.001 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.002 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 0.002 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 0.002 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.002 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.002 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.002 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.002 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.002 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.002 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.002 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.002 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.003 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.003 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.003 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.003 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.003 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 0.003 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.003 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.003 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.003 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.003 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.004 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.004 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.004 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1727 bits (4475), Expect = 0.0
Identities = 740/1217 (60%), Positives = 915/1217 (75%), Gaps = 43/1217 (3%)
Query: 16 GNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTT--------SRGE 67
G+ SR RTSSV ++DEEALKWAA+EKLPTY+RLR ++ + ++
Sbjct: 30 GSQSRRRTSSV---------DEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLL 80
Query: 68 AFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVE 127
EVDV+ L RQ+ I+ + KV E DNEKFL K ++RIDRVGI LP VEVR+EHL VE
Sbjct: 81 HKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVE 140
Query: 128 GEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPP 187
+ Y+ S+ALP+ + E LGI ++K LTILKD SGIIKP RMTLLLGPP
Sbjct: 141 ADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPP 200
Query: 188 ASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247
+SGKTTLLLALAGKLD SLKVSG +TYNG+ + EFVP +T+AYISQ+D H+G MTV+ETL
Sbjct: 201 SSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETL 260
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
FSARCQGVG+RY+LL+ELARRE +AGI P+ ++D++MKA A EG ++++ITDY LK+LG
Sbjct: 261 DFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILG 320
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLK 367
L++C DT+VGDEMIRGISGG++KRVTTGEM+VGP LFMDEISTGLDSSTT+QIV CL+
Sbjct: 321 LDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQ 380
Query: 368 QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRK 427
Q VH+ T ++SLLQPAPET+DLFDDIILLS+GQIVYQGPR+ +LEFFES GFKCP+RK
Sbjct: 381 QIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERK 440
Query: 428 GVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKS 487
G ADFLQEVTS+KDQ+QYW + KPYR+++V EFAE F+SFHVG ++ +EL PFDKS+S
Sbjct: 441 GTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQS 500
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
H+AAL Y K ELLK C +E LLMKRN+FVY+FK QI VA T+FLRT+MH
Sbjct: 501 HKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMH 560
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
+ DG +Y GAL F+ + MFNG AE+++ I +LPVFYKQRD F PPW + +P+++L
Sbjct: 561 TRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLL 620
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
IPIS +E VWV +TYY IG P A RFFKQ LL + QMA+ +FRLIA+ R+M++A
Sbjct: 621 GIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIA 680
Query: 668 NT------------------FEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW-KKFTP 708
NT +I WW+WAYW SP+SY NA+ NE W K
Sbjct: 681 NTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMAS 740
Query: 709 NSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITE 768
++ +G VL F WYW+G+GAL GF +LFN+ FT+A+T+LN L K +A+I+E
Sbjct: 741 DNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISE 800
Query: 769 ES--ESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILT-----EAQGSHPKKRGMI 821
E+ E +++ I ++ + + E R S+ + L EA KRGM+
Sbjct: 801 ETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMV 860
Query: 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 881
LPF P +++FD+V Y VDMP EMK QGV ED+L LL ++GAFRPGVLTALMGVSGAGKT
Sbjct: 861 LPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKT 920
Query: 882 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 941
TLMDVL+GRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP VTV ESL+YSA+L
Sbjct: 921 TLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFL 980
Query: 942 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001
RLP EV E + MF++EVMELVEL L ++VGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 981 RLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSI 1040
Query: 1002 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL LMKRGGQ I
Sbjct: 1041 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100
Query: 1062 YVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSEL 1121
Y GPLGR+S ++I YFEAIPGV KIK+ YNPATWMLEV++ + EV LG+DF + ++ S L
Sbjct: 1101 YSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSL 1160
Query: 1122 YRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFT 1181
Y+RNKAL++ELS P PG+ DLYF TQYSQS + QF +CLWKQ W+YWR+P Y VRFFFT
Sbjct: 1161 YQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFT 1220
Query: 1182 AFIAVLLGSLFWDMGSK 1198
A+++G++FW +G+K
Sbjct: 1221 LAAALMVGTIFWKVGTK 1237
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 995 bits (2575), Expect = 0.0
Identities = 353/1186 (29%), Positives = 555/1186 (46%), Gaps = 149/1186 (12%)
Query: 93 EVDNEKFLLKLKSRIDRVGIDLP--KVEVRYEHLNVEGEAYLASKALPSFT----KFYTT 146
E + + ++ + ID I K+ V Y++L+ G A S P+F K T
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTR 60
Query: 147 VFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F + K ILK + G+IKPG +T++LG P SG +TLL +A D
Sbjct: 61 GFRKLKK-----FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFH 115
Query: 207 K-VSGRVTYNGHDMGEFVPERTA--AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
V G +TY+G E Y ++ D H +TV ETL F+ARC+ +R + +
Sbjct: 116 IGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGV 175
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
+ ++ I D Y+ GL +T VG++ +RG
Sbjct: 176 SREEYAKH--------------------------IADVYMATYGLSHTRNTKVGNDFVRG 209
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGGERKRV+ E +G A D + GLDS+T + + LK +I T ++++ Q
Sbjct: 210 VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQ 269
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQK 443
+ + Y+LFD +I+L +G +Y GP + ++FE MGFKCP R+ ADFL +TS ++
Sbjct: 270 CSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ER 328
Query: 444 QYWTHKEKP-YRFVTVEEFAEAFQSFHVGQKISDELRTPFDK---------------SKS 487
Q EK R T +EF +++ ++ E+ D+ +K
Sbjct: 329 QIKPGYEKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQ 386
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
+ + Y +K C++R L MK N +F + +AL ++F
Sbjct: 387 SKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK- 445
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
+ +D GALFFA F+ L EI+ P+ K R + + P A AI S I
Sbjct: 446 --NTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIIS 503
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
+IP +E V+ + Y+++ AGRFF L+ S LFR I A +++ A
Sbjct: 504 EIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEA 563
Query: 668 NTFE------------------DIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW--KKFT 707
T + W KW Y+ +P++YA +++ NEF G + ++
Sbjct: 564 MTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYV 623
Query: 708 PNS--YESIGV--QVLKSRG------------FFAHAY-----WYWLGLGALFGFILLFN 746
P+ Y+++GV +V G + ++ W G + GF + F
Sbjct: 624 PSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFF 683
Query: 747 LGFTMAITFLNQLE-KPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSL 805
+ + F + K ++ + G S+S
Sbjct: 684 FVYILLTEFNKGAKQKGEILVFRRGSLKRAKKA------------------GETSASNKN 725
Query: 806 ILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKL-----------QGVLEDKL 854
+ + G +L + D+V DM +E + ++K
Sbjct: 726 DI---------EAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKR 776
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR 914
V+LN + G +PG LTALMG SGAGKTTL++VL+ R T G ITG + +F R
Sbjct: 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
GY +Q D+H P TV ESL +SA+LR P V + ++EEV++L+E++ ++VG
Sbjct: 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG 896
Query: 975 LPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1033
+PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D G+ +
Sbjct: 897 VPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAI 955
Query: 1034 VCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPA 1093
+CTIHQP +F+ FD L L+++GGQ +Y G LG +S +I+YFE G K + NPA
Sbjct: 956 LCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPA 1014
Query: 1094 TWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPT---QYSQ 1150
WMLEV ++ D+++++R S Y+ K ++ L ++D P +Y+
Sbjct: 1015 EWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAA 1074
Query: 1151 SAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMG 1196
S + QF LW+ YWR P Y +FF T F A+ +G F+ +G
Sbjct: 1075 SLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVG 1120
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = 1e-97
Identities = 109/239 (45%), Positives = 140/239 (58%), Gaps = 47/239 (19%)
Query: 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD 885
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 886 VLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945
VL+GRKT G ITG I I+G P + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
EPTSGLD++AA ++R ++ D+G+ ++CTIHQP IF+ FD L L+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 4e-70
Identities = 92/237 (38%), Positives = 138/237 (58%), Gaps = 45/237 (18%)
Query: 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVL 887
+L+F + +V + LL +SG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 888 SGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 947
+GR+TG ++G + I+G P + +F +I GY Q+DI P +TV E+L+++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 948 DSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1007
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 1008 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
TSGLD+ +A VM +R DTGRT++C+IHQP +IF+ FD+L L+ + G+ IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 242 bits (619), Expect = 2e-68
Identities = 115/350 (32%), Positives = 183/350 (52%), Gaps = 21/350 (6%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-ITGNITISGYPKKQETFAR 914
LL +SG +PG L A+MG SGAGKTTLM+ L+ R G +G++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
IS Y +Q+D+ P +TV E L++ A LR+P V + ++ ++EV++ + L+ + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 975 LPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1033
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 1034 VCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPA 1093
+CTIHQP ++F+ FD++ LM G+ Y+G + S + YNPA
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGS-PDQAVPFFSDLGH-----PCPENYNPA 272
Query: 1094 TWMLEV-------TASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPG---SKDLY 1143
+ ++V S+E + D F S++ R S G +
Sbjct: 273 DFYVQVLAVIPGSENESRERIEKI--CDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENM 330
Query: 1144 FPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFW 1193
Y+ S +TQF A L + S R+P VR T A+L+G ++
Sbjct: 331 EGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYL 380
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 1e-63
Identities = 157/644 (24%), Positives = 272/644 (42%), Gaps = 88/644 (13%)
Query: 146 TVFEDIFNYLGILPSRKKH-LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS 204
++ + + L R++ +LK+VSG+ KPG + ++G +GKTTL+ ALA +
Sbjct: 18 GSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPK 77
Query: 205 SLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
+K SG V NG + +AY+ Q D I +TVRE L F A +
Sbjct: 78 GVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAH-------LRMPR 130
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE-MIRG 323
+ ++E + V+ LGL CA+T +G ++G
Sbjct: 131 RVTKKEKRERVD-------------------EVLQA-----LGLRKCANTRIGVPGRVKG 166
Query: 324 ISGGERKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL 382
+SGGERKR+ E++ P L LF DE ++GLDS + +V LK + T + ++
Sbjct: 167 LSGGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAYSVVQVLK-GLAQKGKTIICTIH 224
Query: 383 QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQ 442
QP+ E ++LFD IIL+++G++ Y G + + FF +G CP+ ADF +V +
Sbjct: 225 QPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPG 284
Query: 443 KQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKR 502
+ + +E+ ++F +G+ + K+ L +
Sbjct: 285 SE-----NESRE--RIEKICDSFAVSDIGRDMLVNTNLWSGKAGG----LVKDSENMEGI 333
Query: 503 ELLKTCISRELLLMKRNSFVYIFK--------LTQISSVALAFMTLFLRTKMHKHSLTDG 554
+ ++ L+KR S++ + + L Q A+ ++L LT
Sbjct: 334 GYNASWWTQFYALLKR-SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQG-----LTQK 387
Query: 555 GIYA--GALF-FATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPI 611
G+ GALF F T M N I++ A+LPVF ++ + AY + I ++P+
Sbjct: 388 GVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPL 447
Query: 612 SFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF- 670
+ A++ +TY++IG A F L V +A++ LI+ S +A T
Sbjct: 448 FIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVG 507
Query: 671 -----------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYE- 712
+ I ++KW + S Y ++ N++ + T +
Sbjct: 508 PPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTG 567
Query: 713 ---SIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAI 753
S G +L++ F +L L L I F L A+
Sbjct: 568 PCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 2e-55
Identities = 83/210 (39%), Positives = 124/210 (59%), Gaps = 6/210 (2%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT-GNITISGYPKKQETFAR 914
+LN +S G + A++G SG+GKTTL+D +SGR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
Y Q+DI P +TV E+L Y+A LRLP + RK +E V L+ L + +G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK----RVEDVLLRDLALTRIG 137
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V+
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 1035 CTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
TIHQP D+F FD + L+ G +Y G
Sbjct: 198 LTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-43
Identities = 69/245 (28%), Positives = 113/245 (46%), Gaps = 19/245 (7%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP--KKQ 909
L+G+S PG + L+G +GAGKTTL+ +L+G +G I + GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
R GY Q P +TV E+L + A L + ++E R IEE++EL L+
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1028
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R +
Sbjct: 131 NKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 1029 TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKD 1088
G T++ + H + + D + ++ G I G +L F +E +
Sbjct: 186 GGVTILLSTHILE-EAEELCDRVIILNDGKI-IAEGTPE----ELKEKFGGKGVIELEPE 239
Query: 1089 GYNPA 1093
A
Sbjct: 240 RLELA 244
|
Length = 293 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 7e-43
Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 38/246 (15%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
K+ IL DVS ++ G++ +LG SGKTTLL A++G+++ SG++ +NG
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
++ AY+ Q D + +TVRETL ++A + R++ I+ D
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRL------------PRKSSDAIRKKRVED 125
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG-EMMVGP 341
V ++ A T +G +++GISGGER+RV+ +++ P
Sbjct: 126 VLLRD-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ L +DE ++GLDS T +V+ L Q N ++++ QP + + LFD I+LLS G
Sbjct: 163 KV-LILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSG 220
Query: 402 QIVYQG 407
+IVY G
Sbjct: 221 EIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 8e-40
Identities = 40/91 (43%), Positives = 58/91 (63%)
Query: 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGT 376
G+E +RGISGGERKRV+ E +V A L D + GLDSST +I+ C++ + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+SL Q + E YDLFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 6e-39
Identities = 131/489 (26%), Positives = 231/489 (47%), Gaps = 54/489 (11%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
TIL V+G+ PG + +LGP SGK+TLL ALAG++ + +G + N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
RT +++Q D +TVRETL F S L L ++E
Sbjct: 141 RTG-FVTQDDILYPHLTVRETLVFC-------SLLRLPKSLTKQE--------------- 177
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG-EMMVGPALA 344
K + E +VI++ LGL C +T++G+ IRGISGGERKRV+ EM++ P+L
Sbjct: 178 KILVAE----SVISE-----LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL- 227
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE ++GLD++ +++V L T V S+ QP+ Y +FD +++LS+G+ +
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
Query: 405 YQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEA 464
+ G + +FES+GF ADFL ++ + Q + +EKP + +
Sbjct: 287 FFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN---VKQSLVAS 343
Query: 465 FQSFHVGQ-KISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKR---NS 520
+ + + K + E+ + + +T+ + + R + T ++ +L++R
Sbjct: 344 YNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKER 403
Query: 521 FVYIFKLTQISSVALAFMTLFLRTKMHKHS-LTDGGIYAGALFFATAMVMFNGLAEISMT 579
F ++ V A + L M HS D G LFF + +F G+ +
Sbjct: 404 KHESFNTLRVFQVIAAALLAGL---MWWHSDFRDVQDRLGLLFF---ISIFWGVFPSFNS 457
Query: 580 IAKLP----VFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGR 635
+ P +F K+R + +Y + + +P+ + +++ +TY++ G P G
Sbjct: 458 VFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGA 517
Query: 636 FFKQYLLFL 644
F L+ L
Sbjct: 518 FLLTLLVLL 526
|
Length = 659 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 1e-38
Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 26/216 (12%)
Query: 503 ELLKTCISRELLLMKRNSFV-YIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGAL 561
LK + RE L R+ + +++L Q +AL F T+F + G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD----TSLGGLNRPGLL 56
Query: 562 FFATAMVMFNGLAEISMT-IAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWV 620
FF+ F+ L IS I + V ++ + P AY + ++++PIS L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 621 FLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF---------- 670
+ Y+++G + RFF L+ L AS L IAA S A+
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 671 --------EDIKKWWKWAYWCSPMSYAQNAIVANEF 698
+ + W +W Y+ +P++YA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 2e-37
Identities = 88/291 (30%), Positives = 159/291 (54%), Gaps = 26/291 (8%)
Query: 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLV-----------------LLNGLSGAFRPGV 868
P +L F +V Y V + MK +G +++ +LNG++G PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 869 LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 928
+ A++G SG+GK+TL++ L+GR G TG I + ++ R G+ Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988
+TV E+L++ + LRLP + + + + E V+ + L +++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAF 1048
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQP ++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 1049 DELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEV 1099
D + ++ G+ ++ G ++YFE++ NPA ++L++
Sbjct: 275 DSVLVLSE-GRCLFFGKGS----DAMAYFESVGFSPSFP--MNPADFLLDL 318
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 4e-37
Identities = 78/296 (26%), Positives = 133/296 (44%), Gaps = 51/296 (17%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
T L VS ++PG + LLGP +GKTTLL LAG L + SG + G+D+ +
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVK 71
Query: 222 FVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ R Y+ Q + E+TVRE L F AR G+
Sbjct: 72 EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---------------------- 109
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
+EA + L++ GLE ++ +R +SGG ++R++ ++
Sbjct: 110 ------------KEEAEERIEELLELFGLE-----DKANKKVRTLSGGMKQRLSIALALL 152
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS--LLQPAPETYDLFDDIIL 397
L +DE ++GLD + +I L++ T ++S +L+ E +L D +I+
Sbjct: 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVII 209
Query: 398 LSDGQIVYQGPRELVLEFFESMGFKC--PKRKGVADFLQEVTSRKDQKQYWTHKEK 451
L+DG+I+ +G E + E F G P+R +A+ L+ + K +++ E
Sbjct: 210 LNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAEILEA 265
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 6e-37
Identities = 137/585 (23%), Positives = 231/585 (39%), Gaps = 109/585 (18%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+K+ IL +V G +KPG +T L+G +GKTTLL LA ++ + + G NG
Sbjct: 770 KIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRP 829
Query: 219 MGE-FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
+ F +R+ Y+ Q D H+ TVRE+L FSA R+
Sbjct: 830 LDSSF--QRSIGYVQQQDLHLPTSTVRESLRFSAYL--------------RQPKSVSKS- 872
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG-E 336
E + +K+L +E AD +VG G++ +RKR+T G E
Sbjct: 873 ----------------EKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVE 915
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI-SLLQPAPETYDLFDDI 395
++ P L LF+DE ++GLDS T + I +++ + G A++ ++ QP+ ++ FD +
Sbjct: 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLA--DHGQAILCTIHQPSAILFEEFDRL 973
Query: 396 ILLSDG-QIVYQGP----RELVLEFFESMGF-KCPKRKGVADFLQEVTSRKDQKQYWTHK 449
+LL G Q VY G ++ +FE G KCP+ A+++ EV H
Sbjct: 974 LLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPG----AHA 1029
Query: 450 EKPYRFV--TVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKT 507
+ Y V E+ V ++ D L K++ Y A K
Sbjct: 1030 NQDYHEVWRNSSEYQA------VKNEL-DRLEAELSKAEDDNDPDALSKYAASLWYQFKL 1082
Query: 508 CISRELLLMKRN-SFVYI-FKLTQISSVALAFMTLFLRTKMHKHSLTD--GGIYAGALFF 563
+ R R ++Y F LT +++ + F F + L + ++ + F
Sbjct: 1083 VLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFT--FFKVGTSLQGLQNQMFAVFMATVLF 1140
Query: 564 ATAMVMFNGLAEISMTIAKLPVFYKQRDF--------RFFPPWAYAIPSWILKIPISFLE 615
+ LP F QRD R F A+ ++IP + +
Sbjct: 1141 NPLI---QQY---------LPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVA 1188
Query: 616 VAVWVFLTYYVIGCDPNA-------GRFFKQYLLFLAVNQMASALFRLIAATGRSMVVAN 668
++ F+ YY +G NA R +LL S L +++ + + A
Sbjct: 1189 GTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAA 1248
Query: 669 TF------------------EDIKKWWKWAYWCSPMSYAQNAIVA 695
+ +W + Y CSP +Y A+++
Sbjct: 1249 VLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLS 1293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 4e-34
Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 157 ILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
+ + ILKD SG++KPG M L+LG P SG +TLL ALA + + ++ V G + YNG
Sbjct: 12 TTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71
Query: 217 HDMGEF--VPERTAAYISQHDNHIGEMTVRETLAFSARCQG 255
EF Y+S+ D H +TVRETL F+ RC+G
Sbjct: 72 IPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-32
Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 38/219 (17%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY--ITGNITISGYPKK 908
K+ +L SG +PG + ++G G+G +TL+ L+ R T G + G+I +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
+ E + Y + D+H P +TV E+L ++ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 1027 VD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
D T +++Q +I+D FD++ ++ G++IY G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 3e-31
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA- 913
++ LS G + L+G +GAGKTT + +L+G R T +G I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 914 -RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
+ GYC Q D +TV E L + A L+ P+ K +E ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 1033 VVCTIH 1038
++ T H
Sbjct: 185 IILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 9e-30
Identities = 143/588 (24%), Positives = 263/588 (44%), Gaps = 107/588 (18%)
Query: 148 FEDIFNYLGILPSRKKH-------LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG 200
F+D+ NY +P+ K L +L++V+G +PG +T L+G +GKTTL+ LAG
Sbjct: 870 FDDV-NYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG 928
Query: 201 KLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRY 260
+ + + G + +G + R + Y Q+D H ++TVRE+L +SA
Sbjct: 929 R-KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSA--------- 978
Query: 261 ELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320
R E +E + D ++++ L+ D +VG
Sbjct: 979 -----FLRLPKEVS-----------------KEEKMMFVDEVMELVELDNLKDAIVGLPG 1016
Query: 321 IRGISGGERKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG-TAV 378
+ G+S +RKR+T E++ P++ +FMDE ++GLD+ ++ ++ V ++G T V
Sbjct: 1017 VTGLSTEQRKRLTIAVELVANPSI-IFMDEPTSGLDARAAAIVMRTVRNTV--DTGRTVV 1073
Query: 379 ISLLQPAPETYDLFDDIILLS-DGQIVYQGP----RELVLEFFESM-GF-KCPKRKGVAD 431
++ QP+ + ++ FD+++L+ GQ++Y GP ++E+FE++ G K ++ A
Sbjct: 1074 CTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPAT 1133
Query: 432 FLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQK---ISDELRTPFDKSKSH 488
++ EV+S + + +FAE ++S + Q+ + EL TP +
Sbjct: 1134 WMLEVSSLAAEVKLGI------------DFAEHYKSSSLYQRNKALVKELSTPPPGASDL 1181
Query: 489 RAALTTEVYGAGKRELLKTCISRELLLMKR----NSFVYIFKLTQISSVALAFMTLFLRT 544
A G+ K+C+ ++ R N + F L + AL T+F +
Sbjct: 1182 YFATQYSQSTWGQ---FKSCLWKQWWTYWRSPDYNLVRFFFTL----AAALMVGTIFWKV 1234
Query: 545 KMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIA-KLPVFYKQRDFRFFPPWAYAIP 603
+ + D + GA++ A V N + + +A + VFY++R + YAI
Sbjct: 1235 GTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIA 1294
Query: 604 SWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFF-------KQYLLF---------LAVN 647
+ +IP ++ + + Y ++ + A +FF +L F L N
Sbjct: 1295 QVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPN 1354
Query: 648 QMASALFRLIAATGRSMVVANTFE-------DIKKWWKWAYWCSPMSY 688
Q +A+F AA + N F I KWW W YW P+++
Sbjct: 1355 QQVAAIF---AAAFYGLF--NLFSGFFIPRPKIPKWWVWYYWICPVAW 1397
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-29
Identities = 93/393 (23%), Positives = 166/393 (42%), Gaps = 70/393 (17%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY---ITGNITISGYP----KK 908
+L + G +PG LT ++G G+G +TL+ ++ T G+ + G IT G KK
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS-NTDGFHIGVEGVITYDGITPEEIKK 134
Query: 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETRKMFIEEVMELVE--- 964
+ Y + D+H P +TV E+L ++A + P D +R+ + + + ++
Sbjct: 135 HYRGDVV--YNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY 192
Query: 965 -LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA---AIVM 1020
L + VG V G+S +RKR++IA + I D T GLD+ A +
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 1021 RTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAI 1080
+T N +DT T + I+Q D ++ FD++ ++ G +IY GP + YFE
Sbjct: 253 KTSANILDT--TPLVAIYQCSQDAYELFDKVIVLYEG-YQIYFGPADK----AKQYFE-- 303
Query: 1081 PGVEKIKDGY------NPATWMLEVTASSQEVALG----------VDFNDIFRCSELYRR 1124
K G+ A ++ +T+ ++ +F +R S Y
Sbjct: 304 ------KMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEY-- 355
Query: 1125 NKALIEELSKP-----TPGSKDLYFPTQ-------------YSQSAFTQFMACLWKQHWS 1166
L++E+ + +K+ Y + Y+ S Q CL +
Sbjct: 356 -AQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLR 414
Query: 1167 YWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKT 1199
NP +T F +A++L S+F+++ T
Sbjct: 415 MKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT 447
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-28
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
K +LK+VSG KPG +T ++GP +GK+TLL ALAG+ + L VSG V NG + +
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPLDK 77
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
+ Y+ Q D +TVRETL F+A+ +G+
Sbjct: 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 5e-27
Identities = 69/208 (33%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP--KKQ 909
K L+G+S PG+ L+G +GAGKTTLM +L+ G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ R GY Q P TV E L Y AWL+ + S+ K ++EV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
R V+ + H D+ +++ ++ +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 8e-27
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 31/214 (14%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET---F 912
L+ +S + G ++G +G+GK+TL+ +L+G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 913 ARISGYCEQNDIHSP---FV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
R G QN P F TV E + + PE + E R +EE +ELV L+
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 968 L----IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
L +L G G Q++R+ IA L +P I+ +DEPT+GLD ++ +
Sbjct: 127 LRDRSPFTLSG-----G----QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELL 177
Query: 1024 RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ G+T++ H + + D + +++ G
Sbjct: 178 KKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-26
Identities = 35/64 (54%), Positives = 47/64 (73%)
Query: 703 WKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKP 762
W K S E++G VLKSRG F AYWYW+G+GAL GF +LFN+ FT+A+T+LN L K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 763 RAVI 766
+A++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 62/215 (28%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQET 911
+L+ LS + G +T ++G +G+GK+TL+ L+G + G + I+ K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE-- 73
Query: 912 FARISGYCEQNDIHSPFVTVYESLL-----YSAWLRLPPEVDSETRKMFIEEVMELVELK 966
A+ Y Q+ +TVYE +L + P + D E +EE +EL+ L+
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE----IVEEALELLGLE 129
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1025
L V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 130 HLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL 184
Query: 1026 TVDTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1057
+ G TVV +H + A D L L+K G
Sbjct: 185 NREKGLTVVMVLHDLNL----AARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 1e-23
Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 27/211 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L +S +PG A++G +GAGK+TL+ + G + T +G+I + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 915 ISGYCEQN---DIHSPFVTVYESLL-----YSAWLRLPPEVDSETRKMFIEEVMELVELK 966
I GY Q D P ++V + +L + R + D ++E +E V L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK----VDEALERVGLS 123
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
L +G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 124 ELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178
Query: 1027 VDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G T++ H G+ + + FD + L+ R
Sbjct: 179 RREGMTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 4e-22
Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 32/219 (14%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ 909
K+ L G+S + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 910 ETFAR---ISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
R I G+ Q+ + P +T E++ LP + +K E EL+E
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVE------LPLLLAGVPKKERRERAEELLE 126
Query: 965 LKPLIQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
VGL S LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 127 R-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 1020 MRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
M +R + G T+V H P ++ + D + ++ G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 94.0 bits (235), Expect = 5e-22
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 53/205 (25%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP--KKQETF 912
L+ +S G + L+G +GAGKTTL+ ++ G + G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1033 VVCTIHQPGIDIFDAFDELFLMKRG 1057
++ + H + D + ++ G
Sbjct: 148 ILLSSHIL-EEAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 8e-22
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 25/212 (11%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
+L +S + G +TAL+G +GAGK+TL+ + G +G I I G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 916 SGYCEQNDIHSPF-----VTVYE---SLLYSA--WLRLPPEVDSETRKMFIEEVMELVEL 965
GY Q S +TV + Y W R + D E ++E +E V +
Sbjct: 77 IGYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK----VDEALERVGM 129
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ L +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 130 EDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184
Query: 1026 TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G+TV+ H G+ + FD + + R
Sbjct: 185 LRQEGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 1e-21
Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 55/214 (25%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 908
+L+ LS + G + ++G +GAGK+TL+ L+G + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
+ AR Y Q +EL+ L L
Sbjct: 70 E--LARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 91 ADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 1029 -TGRTVVCTIHQPGIDIFDAF---DELFLMKRGG 1058
G+TVV +H + A D + L+K G
Sbjct: 146 ERGKTVVMVLHDLNL----AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 2e-21
Identities = 36/87 (41%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
+RG+SGGERKRV+ +V LF+DE ++GLDSS+ Q+++ L++ T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICS 167
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG 407
+ QP+ E ++LFD ++LLS G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 2e-21
Identities = 76/256 (29%), Positives = 111/256 (43%), Gaps = 52/256 (20%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL D+S I G +T +LGP SGK+TLL LAG L SG V +G D+ P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ AY+ Q + +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP----- 103
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
++ +E I + L++LGLE AD V + +SGGER+RV ++ A
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARA 152
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397
LA L +DE ++ LD + +++ L+ G V+ +L D +IL
Sbjct: 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR-EKGLTVVMVLHDLNLAARYADHLIL 211
Query: 398 LSDGQIVYQGPRELVL 413
L DG+IV QG E VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 3e-21
Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 35/215 (16%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
+L+ LS G + AL G +GAGKTTL +L+G +++ G +I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 914 RISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK---PLI 969
+ GY Q+ D +V E LL L+ + + + + ++L LK PL
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQAET--VLKDLDLYALKERHPLS 126
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
LS Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 127 -----------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
G+ V+ H D FL K + + +
Sbjct: 176 GKAVIVITH----------DYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 1e-20
Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 29/218 (13%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK--- 907
D L+ L+ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 908 KQETFARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
E + + + QN P++ T+ E++L L P D E I ++
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENIL----LARPDASDEE-----IIAALDQAG 435
Query: 965 LKPLIQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
L + GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA I+
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 1020 MRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
++ ++ +TV+ H+ D DA D + ++ G
Sbjct: 496 LQALQELAK-QKTVLVITHRL-EDAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 23/213 (10%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 908
+ L+ LS PG AL+G SG GKTTL+ +++G R G I ++G P +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
+ R G Q+ P +TV E++ + LR P+ + R + E++ELV L+ L
Sbjct: 71 R----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGL 123
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-V 1027
+ LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 1028 DTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1057
+ G T + H D +A D + +M G
Sbjct: 179 ELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 4e-20
Identities = 67/261 (25%), Positives = 108/261 (41%), Gaps = 62/261 (23%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
+K + D+S + G + LLG +GKTT L L G+L + SG NG+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI- 66
Query: 221 EFVPERTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGI 275
+R AA Y Q D E+TVRE L F AR +G+
Sbjct: 67 --RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---------------- 108
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG 335
E + L+VLGL A+ +SGG +++++
Sbjct: 109 ------------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLA 145
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----SLLQPAPETYDL 391
++G L +DE ++GLD ++ I + + + G ++I S+ E L
Sbjct: 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLIL---EVRKGRSIILTTHSMD----EAEAL 198
Query: 392 FDDIILLSDGQIVYQG-PREL 411
D I ++SDG++ G P+EL
Sbjct: 199 CDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 6e-20
Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 53/208 (25%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
LN +S G + AL+G SG+GK+TL+ ++G G I ++ +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R G Q+ P +TV E++
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------ 99
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1032
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G T
Sbjct: 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 1033 VVCTIHQPGIDIFDAF---DELFLMKRG 1057
VV H D+ +A D + +++ G
Sbjct: 154 VVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 148 FEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLK 207
++++ NY +P + +L ++SG +KPG +T L+G +GKTTLL LAG+ + +
Sbjct: 6 WKNL-NY--TVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV- 61
Query: 208 VSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVG 257
++G + NG + + R+ Y+ Q D H +TVRE L FSA +G+
Sbjct: 62 ITGEILINGRPLDKNFQ-RSTGYVEQQDVHSPNLTVREALRFSALLRGLS 110
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 2e-19
Identities = 62/247 (25%), Positives = 100/247 (40%), Gaps = 62/247 (25%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE- 225
L D+S IK G L++GP SGK+TLL L G L SG V +G D+ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKE 72
Query: 226 --RTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R + Q+ D+ TV E +AF G+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-------------------------- 106
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GP 341
+E + L+++GLE D +SGG+++RV ++ P
Sbjct: 107 --------PEEEIEERVEEALELVGLEGLR-----DRSPFTLSGGQKQRVAIAGVLAMDP 153
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI------SLLQPAPETYDLFDDI 395
+ L +DE + GLD + +++ LK+ + G +I LL +L D +
Sbjct: 154 DI-LLLDEPTAGLDPAGRRELLELLKK-LK-AEGKTIIIVTHDLDLL------LELADRV 204
Query: 396 ILLSDGQ 402
I+L DG+
Sbjct: 205 IVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 4e-19
Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 19/222 (8%)
Query: 845 KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNIT 901
K+ G+ +K+ L ++ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 902 ISGYPKKQ--ETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIE 957
++ +K+ + + G+ QN + P +TV E++ + + RK E
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAE 123
Query: 958 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
E++E++ L+ + S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 124 ELLEVLGLEDRLLKKK----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1018 IVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058
V+ +R + G+T++ H P ++ D + +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 9e-19
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1037
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1038 HQPGIDIFDAFDELFLMKRG 1057
H P A D + ++K G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-18
Identities = 70/269 (26%), Positives = 108/269 (40%), Gaps = 51/269 (18%)
Query: 806 ILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFR 865
IL K + LP + F+ V + D +L LS
Sbjct: 449 ILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYG-----------PDDPPVLEDLSLEIP 497
Query: 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGY--ITGNITISGYPKKQ---ETFARISGYCE 920
PG A++G SG+GK+TL+ +L G Y G I + G + R GY
Sbjct: 498 PGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGYVL 553
Query: 921 QNDIHSPFVTVYESLLYSAWLR-----LPPEVDSETRKMFIEEVMELVELKPLIQSL--- 972
Q+ L+S +R PE E I E +L I++L
Sbjct: 554 QDP-----------FLFSGSIRENIALGNPEATDEE----IIEAAQLAGAHEFIENLPMG 598
Query: 973 ----VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
VG G + LS QR+RL +A L++ P I+ +DE TS LD AI+++ + +
Sbjct: 599 YDTPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QIL 656
Query: 1029 TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
GRTV+ H+ + D + ++ +G
Sbjct: 657 QGRTVIIIAHRL--STIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFA- 913
++G+S +PG +T L+G +GAGKTT + +L+G G T+ G+ +E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEA 76
Query: 914 -RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G+ + +T E+L Y A L + + +EE+ + + ++ L+
Sbjct: 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR 133
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G+
Sbjct: 134 VG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188
Query: 1033 VVCTIH 1038
++ + H
Sbjct: 189 ILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 3e-18
Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 36/201 (17%)
Query: 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ- 909
LV L+ +S + RPG + L+G +GAGKTTL +++SG R T G + I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 910 ------ETFARISGYCEQNDIHSPF--VTVYESLL--------YSAWLRLPPEVDSETRK 953
TF Q F +TV E+++ L + E R+
Sbjct: 73 ARLGIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122
Query: 954 MFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 123 R-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 1014 RAAAIVMRTVRNTVDTGRTVV 1034
+ +R + G TV+
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 3e-18
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 16/191 (8%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP--K 907
++G++ R G + +G +GAGKTT + +L+ R T G ++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVR 59
Query: 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+ R G Q +T E+L L P+ ++E R EE++EL EL
Sbjct: 60 EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEER---AEELLELFELGE 116
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 117 AADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171
Query: 1028 DTGRTVVCTIH 1038
+ G T++ T H
Sbjct: 172 EEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 3e-18
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L GL+ A G + AL+G +GAGK+TL+ L+G R G + + Y +K R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 915 IS-GYCEQN---DIHSPFVTVYESLLYSAW-LRLPPEVDSETRKMFIEEVMELVELKPLI 969
G Q+ + + V + + + L L + E R + E + V L
Sbjct: 68 QRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEA-EVERR---VREALTAVGASGLR 121
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
+ LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 122 ERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 1030 GRTVVCTIH 1038
G TVV + H
Sbjct: 177 GMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 6e-18
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 33/205 (16%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT-ISGYPKKQETFA 913
L +S + PG AL+G SGAGK+TL+ L+G T G + + T I+ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 914 RI-SGYCEQNDIHSPFVTVYESLL---------YSAWLRLPPEVDSETRKMFIEEVMELV 963
R G Q ++V E++L + + L P+ + + + +
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-------KQRALAAL 129
Query: 964 ELKPLIQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
E VGL LS Q++R+ IA L+ P +I DEP + LD ++
Sbjct: 130 ER-------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182
Query: 1019 VMRTVRN-TVDTGRTVVCTIHQPGI 1042
VM ++ + G TV+ ++HQ +
Sbjct: 183 VMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 7e-18
Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 20/223 (8%)
Query: 850 LEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909
+ L +S G L+G +G+GK+TL+ +L+G +G + + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSS 70
Query: 910 ET----FARISGYCEQNDIHSPFV-TVYESLLYSA-WLRLPPEVDSETRKMFIEEVMELV 963
E + G QN F TV + + + L LP E + E R + E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPRE-EIEER---VAEALELV 126
Query: 964 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
L+ L+ LS Q++R+ IA L P I+ +DEPT+GLD + ++ +
Sbjct: 127 GLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181
Query: 1024 RNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
+ + G+T++ H + + D + ++ G+ + G
Sbjct: 182 KKLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 7e-18
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 22/201 (10%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPK 907
+ L +S PG AL+G SGAGK+TL+++L G T G I + ++
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD- 390
Query: 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+++ + Q+ PF+ ++ + L P D+E I E +E L
Sbjct: 391 -ADSWRDQIAWVPQH----PFL-FAGTIAENIRLARPDASDAE-----IREALERAGLDE 439
Query: 968 LIQSL-VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
+ +L GL G +GLS Q +RL +A + + ++ +DEPT+ LDA A V+
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499
Query: 1022 TVRNTVDTGRTVVCTIHQPGI 1042
+R + GRTV+ H+ +
Sbjct: 500 ALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 8e-18
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 32/200 (16%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQE 910
+L G+ R G + A++G SG+GK+TL+ ++ G R G I G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 911 TFARISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
R G Q + + TV+E++ + LR E ++ EE+ E+V
Sbjct: 74 RLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVLE 119
Query: 966 KPLIQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
K L VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 K-L--EAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1021 RTVRNTVDT-GRTVVCTIHQ 1039
+R+ G T + H
Sbjct: 177 DLIRSLKKELGLTSIMVTHD 196
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-17
Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 22/193 (11%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP---KKQETFA 913
L+G+S PG A++G SG+GK+TL+ L+G + G +T+ G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVR 408
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R C Q D H TV E+L + P+ E + +E V L +++L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLADWLRALP 458
Query: 974 -GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
GL G + LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 459 DGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517
Query: 1028 DTGRTVVCTIHQP 1040
+GRTVV H
Sbjct: 518 LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-17
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
I E + P +T E+L A L + I+EV+++V LK
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKD-----SA 120
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
V G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 121 KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 1035 CTIHQ 1039
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 37/229 (16%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT---GNITISGYPKKQET 911
L ++ PG A++G SGAGK+TL+ ++ + G I +IT K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 912 FARISGYCEQNDIHSPFVTVYESLL---------YSAWLRLPPEVDSETRKMFIEEVMEL 962
RI G Q+ +TV E++L + + L E D E +
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED-------KERALSA 129
Query: 963 VELKPLIQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
+E VGL LS Q++R+ IA L P +I DEP + LD + +
Sbjct: 130 LER-------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSK 182
Query: 1018 IVMRTVRN-TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
VM ++ + G TV+ +HQ +D+ + + + + G+ ++ G
Sbjct: 183 QVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 7e-17
Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 55/254 (21%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+ + LK VS I+ G ++GP SGK+TLL + G LD SG V +G D
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRP--TSGEVRVDGTD 67
Query: 219 MGEFVPERTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN 271
+ + + AA ++ Q N + ++T E + GV + E R
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKK-----ERRERAE 122
Query: 272 EAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKR 331
E L+ +GL + E+ SGG+++R
Sbjct: 123 EL-----------------------------LERVGLGDRLNHYPS-EL----SGGQQQR 148
Query: 332 VTTGE-MMVGPALALFMDEISTG-LDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389
V + P + + DE TG LDS T +++ L++ ++ +GT ++ ++ PE
Sbjct: 149 VAIARALANDPKI-ILADE-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDPELA 204
Query: 390 DLFDDIILLSDGQI 403
+ D II L DG+I
Sbjct: 205 EYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 1e-16
Identities = 65/279 (23%), Positives = 110/279 (39%), Gaps = 54/279 (19%)
Query: 146 TVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
E++ LKDVS I+ G LL+GP SGK+TLL L G L +
Sbjct: 4 IEAENLSFRY------PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT 57
Query: 206 ---LKVSGRVTYNGHDMGEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYE 261
+ V G T + + E + + Q+ D+ + TV + +AF
Sbjct: 58 SGEVLVDGLDTSSEKSLLELR--QKVGLVFQNPDDQLFGPTVEDEVAF------------ 103
Query: 262 LLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321
L L E ++ E L+++GLE D
Sbjct: 104 GLENLGLPREE------------IEERVAE----------ALELVGLEELLD-----RPP 136
Query: 322 RGISGGERKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
+SGG+++RV G + +GP + L +DE + GLD +++ LK+ + G +I
Sbjct: 137 FNLSGGQKQRVAIAGVLAMGPEI-LLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIII 194
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
+ + D +++L DG+I+ G + E +
Sbjct: 195 VTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 61/237 (25%), Positives = 102/237 (43%), Gaps = 29/237 (12%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 908
++ +S + G L+G SG GKTTL+ +++G + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-- 73
Query: 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
R G Q+ P +TV E++ + L++ ++ K +EE +ELV L+
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1027
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 1028 DTGRTVVCTIHQPGIDIFDAF---DELFLMKRG-------GQEIYVGPLGRHSCQLI 1074
+ G T V H D +A D + +M G +EIY P R I
Sbjct: 185 ELGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 17/187 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP--KKQETF 912
+ G+S R G + L+G +GAGKTT + +L+ + T G T++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G Q+ +T +E+L A L V R+ I+E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1031
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1032 TVVCTIH 1038
T++ T H
Sbjct: 184 TILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ- 909
L +N +S RPG + L+G +GAGKTTL ++++G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 910 ------ETFARISGYCEQNDIHSPFVTVYESLL--------YSAWLRLPPEVDSETRKMF 955
TF Q P +TV E++ S L P E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 956 I-EEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
E++E V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183
Query: 1015 AAAIVMRTVRNTVDT-GRTVV 1034
+ +R D G T++
Sbjct: 184 ETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 21/207 (10%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT--GNITISGYPKKQE---T 911
L+ +S RPG AL+G +GAGK+TL +L T Y+ G I+++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
AR+ +Q + ++V ++L Y A L ++ R I E++ + L +
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGL-----A 123
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1030
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 124 ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1031 RTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+V+ H +D +A D L ++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 6e-16
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 12/186 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK--TGGYITGN-ITISGYPKKQETFA 913
L+G++ + G L+G SGAGK+TL+ ++ + T G I N +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G Q+ P VYE++ EV + + V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVA------FALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1033 VVCTIH 1038
VV H
Sbjct: 189 VVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 6e-16
Identities = 74/242 (30%), Positives = 113/242 (46%), Gaps = 23/242 (9%)
Query: 807 LTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEM---KLQGVLE---DKLVLLNGL 860
LT A +R + P E E S+ L GV + DK V+ NGL
Sbjct: 2 LTRAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVV-NGL 60
Query: 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP-KKQETFARIS-GY 918
S G L+G +GAGK+T+ ++ G + G IT+ G P + AR G
Sbjct: 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGV 118
Query: 919 CEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETRKMFIEEVM-ELVELKPLIQSLVGLP 976
Q D TV E+LL + + + TR+ IE V+ L+E L +S
Sbjct: 119 VPQFDNLDLEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFARL-ESKADAR 169
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1036
VS LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T
Sbjct: 170 -VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 228
Query: 1037 IH 1038
H
Sbjct: 229 TH 230
|
Length = 340 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 8e-16
Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 27/224 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT-ISGYPKKQETFA 913
L ++ G + A++G SGAGK+TL+ L+G T G I N I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 914 RIS-GYCEQNDIHSPFVTVYESLL-----YSAWLR----LPPEVDSETRKMFIEEVMELV 963
R G Q P ++V E++L Y++ R L + E + ++ + +
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK---EDKAQALDALERVG 136
Query: 964 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
L Q S LS Q++R+ IA LV P II DEP + LD +A VM +
Sbjct: 137 ILDKAYQR------ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190
Query: 1024 R--NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
+ N D G TV+ +HQ +D+ + + + + G+ ++ GP
Sbjct: 191 KDINQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 8e-16
Identities = 67/254 (26%), Positives = 109/254 (42%), Gaps = 45/254 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L VS ++PG + +LGP +GK+TLL AL+G+L SG VT NG + + PE
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
A H + +LAF Q V ++ R + +G +P+ D +
Sbjct: 72 ELA-------RHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM------V 339
+A+A + GL R +SGGE++RV ++ V
Sbjct: 118 QALAATD------------LSGLA--------GRDYRTLSGGEQQRVQLARVLAQLWPPV 157
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399
LF+DE ++ LD + + +Q G AV+++L D I+LL
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLH 215
Query: 400 DGQIVYQGPRELVL 413
G+++ G + VL
Sbjct: 216 QGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 26/215 (12%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETF 912
LL+G+S RPG + A++G +GAGK+TL+ LSG G +T + ++ +P ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE--L 73
Query: 913 ARISGYCEQNDIHS-PFVTVYESLLYSAWLRLPPEVDSETRK--MFIEEVMELVELKPLI 969
AR QN + PF TV E + R+P E + + + +L L
Sbjct: 74 ARHRAVLPQNSSLAFPF-TVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTV 1023
LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 130 GRD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1024 RNTVDTGRTVVCTIHQPGIDIFDAF-DELFLMKRG 1057
R G V+ +H +++ + D + L+ +G
Sbjct: 185 RQLAREGGAVLAVLHD--LNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 57/241 (23%), Positives = 101/241 (41%), Gaps = 37/241 (15%)
Query: 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDV 886
+ F V +S ++ L+ +S R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 887 LSG--RKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL 943
L+G + T G + I + I GY Q D+ + T+ +++ A
Sbjct: 50 LAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA---- 102
Query: 944 PPEVDSETRKMFIEEVMELVELKPLIQS-------LVGLPGVSGLSTEQRKRLTIAVELV 996
P D E I EL + + +G G GLS QR+ + +A L+
Sbjct: 103 -PLADDER----ILRAAELAGVTDFVNKHPNGLDLQIGERG-RGLSGGQRQAVALARALL 156
Query: 997 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056
+P I+ +DEPTS +D + + +R + +T++ H+P + D D + +M
Sbjct: 157 NDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIVMDS 213
Query: 1057 G 1057
G
Sbjct: 214 G 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI---TGNITISGYP-KKQETFAR--ISGY 918
G +T L+G +GAGKTTL+ ++ + +G +TI G + +F R I
Sbjct: 26 EEGEITGLLGENGAGKTTLLRMI-----ATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978
+ +++ +T E+L Y A L + + K I E+ + ++L + VG
Sbjct: 81 FGERGLYAR-LTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG---- 132
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ + H
Sbjct: 133 -EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSH 191
|
Length = 245 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 74.7 bits (185), Expect = 2e-15
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 60/208 (28%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETF 912
+L +S +PG A++G SG+GK+TL+ +L T G I + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD--LESL 74
Query: 913 ARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ Y Q+ PF+ T+ E++L
Sbjct: 75 RKNIAYVPQD----PFLFSGTIRENIL--------------------------------- 97
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
SG QR+R+ IA L+ +P I+ +DE TS LD A+++ +R +
Sbjct: 98 ---------SGG---QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAK 144
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G+TV+ H+ D + ++ G
Sbjct: 145 GKTVIVIAHRL--STIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 26/177 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 909
L +S G +TAL+G SG GK+TL+ D++ G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD----EGEVLLDGKDIYD 71
Query: 910 ETFARIS-----GYCEQNDIHSPFV-TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
+ G Q +PF ++Y+++ Y L E +EE +
Sbjct: 72 LDVDVLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKA 127
Query: 964 ELKPLI-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
L + L L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 128 ALWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 74/258 (28%), Positives = 110/258 (42%), Gaps = 55/258 (21%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
LKDVS I PG L+GP +GK+TLL L G ++ + SG V +G D+ +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 225 -ERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGI-KPD 278
R I Q N I ++V E + L L RR +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENV--------------LSGRLGRRSTWRSLFGLF 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-M 337
P + K A L+ +GL A D++ SGG+++RV +
Sbjct: 118 PKEE---KQRALA----------ALERVGLLDKAYQRA-DQL----SGGQQQRVAIARAL 159
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG-TAVISLLQPAPETYDL----F 392
M P L L DE LD +++ Q+++ LK+ ++ G T ++SL Q DL
Sbjct: 160 MQQPKLIL-ADEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQV-----DLAREYA 212
Query: 393 DDIILLSDGQIVYQGPRE 410
D I+ L DG+IV+ GP
Sbjct: 213 DRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 22/194 (11%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ---ETFARISGYCE 920
+T + G SGAGK+TL+ ++G + GG I N T+ +K+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 921 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980
Q P + V E+L + L + + E ++ ++E+++L+ L L+ +
Sbjct: 82 QQYALFPHLNVRENLAFG----LKRKRNRE-DRISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1040
LS +++R+ +A L A P ++ +DEP S LD ++ ++ ++ P
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-------NLNIP 184
Query: 1041 GIDIFDAFDELFLM 1054
I + E +
Sbjct: 185 VIFVTHDLSEAEYL 198
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 3e-15
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L ++ G L+G SG GK+TL+ +++G T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R QN P +TVYE++ + LR P+ + + R ++EV +L+ L+ L+
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLNRKP 131
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
LS QR+R+ +A LV P + +DEP S LDA+
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
|
Length = 338 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 19/195 (9%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETF 912
VL +GLS G L G +G+GKTTL+ +++G G I + G
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG----TIKLDGGDIDDPDV 71
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
A Y + P +TV E+L + A E+D I +E V L PL
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPLA--- 121
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 122 -HLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 1033 VVCTIHQPGIDIFDA 1047
V+ H P + + A
Sbjct: 180 VIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 4e-15
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 15/190 (7%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET 911
DKLV+ +GLS + G L+G +GAGKTT + +L G G+I++ G P
Sbjct: 19 DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRA 75
Query: 912 -FARIS-GYCEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
AR G Q D P TV E+LL + + L + R + + ++E +L+
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARAL-VPPLLEFAKLENK 131
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
+ VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 132 ADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 1029 TGRTVVCTIH 1038
G+T++ T H
Sbjct: 187 RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 7e-15
Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 40/230 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L +S + G AL+G SG GK+TL+ +++G R T G + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
GY Q D P++TV +++ L L +E R E EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR----ERAEELLEL-------VG 120
Query: 975 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1028
L G LS R+R+ +A L +P ++ +DEP S LDA + + + +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 1029 TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFE 1078
TG+TV+ H DI DE + + V L ++++ E
Sbjct: 181 TGKTVLLVTH----DI----DEAVFL---ADRVVV--LSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 72/257 (28%), Positives = 102/257 (39%), Gaps = 62/257 (24%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
++DVS + G +T LLG +GKTTLL +A L SG+VT +G D T
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVD--------T 66
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
S IG +T RE L + AR L L+R+E +A I
Sbjct: 67 VRDPSFVRRKIGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI-- 114
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
A + K L L D VG S G +++V
Sbjct: 115 -----------------AELS-----KRLQLLEYLDRRVG-----EFSTGMKQKVAIARA 147
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397
+V L +DE ++GLD T + + +KQ N G AVI E L D +I+
Sbjct: 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEALCDRVIV 205
Query: 398 LSDGQIVYQGPRELVLE 414
L G++V +G E +
Sbjct: 206 LHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 62/265 (23%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
ILK V+ +K G + ++GP SGK+TL +AG S SG + + G D+ E P+
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDE 73
Query: 227 TAA---YIS-QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A +++ Q+ I ++ E L + ARR + +D
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRSARG----EEPLD 115
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR-----GISGGERKRVTTGEM 337
+ + L +LG++ +E + G SGGE+KR +M
Sbjct: 116 --LLDFLKLLKAK-------LALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQM 158
Query: 338 MV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS-------LLQPAPETY 389
+ P LA+ +DEI +GLD + + + + +I+ ++P
Sbjct: 159 ALLEPKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP----- 212
Query: 390 DLFDDIILLSDGQIVYQGPRELVLE 414
D + +L DG+IV G EL E
Sbjct: 213 ---DYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 1e-14
Identities = 62/264 (23%), Positives = 96/264 (36%), Gaps = 69/264 (26%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
IL VS + G + LLG +GKTTLL + G L SG + ++G D+ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 225 ERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSR-------YELLTELA-RRENE 272
A Y+ + E+TV E L A + R YEL L RR+
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332
AG T+ SGGE++ +
Sbjct: 130 AG---------------------------------------TL---------SGGEQQML 141
Query: 333 TTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVISLLQPAPETYD 390
+M P L L +DE S GL +I +++ + G ++ + Q A +
Sbjct: 142 AIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIRE---LRDEGVTILLVEQNARFALE 197
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
+ D +L G++V +G +L
Sbjct: 198 IADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-14
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 21/221 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L+ +S + G L AL+G SGAGK+TL+ +++G G I N + R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRL--PPEVDSETRKMFIEEVMELVELKPLIQSL 972
G+ Q+ P +TV +++ + +R P E + R +EE++ LV+L+ L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR---VEELLRLVQLEGLADRY 134
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1031
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G
Sbjct: 135 ---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRGG-------QEIYVGP 1065
T V H + + D + ++ +G E+Y P
Sbjct: 190 TTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDHP 229
|
Length = 345 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 15/191 (7%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
+ L + LS G + G +GAGKTTL+ +L+G R G + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
E++ + Y +T E+L + W R ++ T I E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLE 124
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 125 D----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179
Query: 1030 GRTVVCTIHQP 1040
G V+ T HQP
Sbjct: 180 GGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETF 912
+++G+ PG LT L+G +G+GK+TL+ +L+G R G + + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 913 ARISGYCEQNDIHSPFVTVYESLLY------SAWLRLPPEVDSETRKMFIEEVMELVELK 966
AR EQ+ + +TV + + S W P + + + EL
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA-----LARTELS 128
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
L +S LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 129 HLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 1027 VDTGRTVVCTIH 1038
TG TVV +H
Sbjct: 184 AATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 32/214 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L ++ + +PG A++G +GAGKTTL+++L G I I I +K +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK--SLR 76
Query: 914 RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
+ G Q F+ T+ E++ + E + I
Sbjct: 77 SMIGVVLQ----DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAGAHDFIM 123
Query: 971 SL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
L +G LS +R+ L IA ++ +P I+ +DE TS +D ++ +
Sbjct: 124 KLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182
Query: 1024 RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ GRT + H+ I +A D++ ++ G
Sbjct: 183 EKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-14
Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 45/252 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L+D+S ++ G +T L+GP +GK+TLL A+ G L S SG + G + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 226 RTAAYISQHDNHIGE--MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
Y+ Q + +TV++ + G + L +++ E
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKE----------- 118
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+ EA L+ +G+E D +G+ +SGG+++RV +
Sbjct: 119 -------KVDEA-------LERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPD 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL-LQPAPETYDLFDDIILLSDGQ 402
L +DE TG+D + +I + LK+ +++ L FD +I L +
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVM---AYFDRVICL-NRH 215
Query: 403 IVYQGPRELVLE 414
++ GP E VL
Sbjct: 216 LIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 4e-14
Identities = 66/268 (24%), Positives = 97/268 (36%), Gaps = 69/268 (25%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+LK V ++ G + ++GP SGK+TLL + G L SG V +G D+
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEA 70
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
R + Q +TV E +AF R S E + E+
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSE-EEIREIVL----------- 118
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
K L+ +GL D + +SGG +KRV
Sbjct: 119 -----EK----------------LEAVGLRGAEDLYPAE-----LSGGMKKRV------- 145
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD 390
ALA L DE + GLD + I + L + + G I + +
Sbjct: 146 --ALARALALDPELLLYDEPTAGLDPIASGVIDD-LIRSLKKELGLTSIMVTHDLDTAFA 202
Query: 391 LFDDIILLSDGQIVYQGPRELVLEFFES 418
+ D I +L DG+IV +G E E S
Sbjct: 203 IADRIAVLYDGKIVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 5e-14
Identities = 61/271 (22%), Positives = 100/271 (36%), Gaps = 76/271 (28%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
P+ + L DVS IK G L+G SGK+TL A+ G L SG + ++G D
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLK--PTSGSIIFDGKD 68
Query: 219 MGEFVPE------RTAAYISQHD-----NHIGEMTVRETLAFSARCQGVGSRYELLTELA 267
+ + + + Q D N MT+ E +A R G S+ E + A
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQ-DPMSSLNPR--MTIGEQIAEPLRIHGKLSKKEAR-KEA 124
Query: 268 RRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327
G+ + V + +SGG
Sbjct: 125 VLLLLVGVGLPEE-----------------------------------VLNRYPHELSGG 149
Query: 328 ERKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI--- 379
+R+RV + ALA L DE ++ LD S QI++ LK+ + G ++
Sbjct: 150 QRQRV-----AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLLFIT 203
Query: 380 ---SLLQPAPETYDLFDDIILLSDGQIVYQG 407
++ + D + ++ G+IV +G
Sbjct: 204 HDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 6e-14
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 25/197 (12%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI---TGNITISGYPKKQ 909
V+L+G+ G + A++G SG+GK+TL+ ++ G R G I +I +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY 81
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
E R+ G Q +TV+E++ + LR E K+ + ELV +K
Sbjct: 82 EIRKRM-GVLFQQGALFSSLTVFENVAFP--LR-------EHTKLPESLIRELVLMK--- 128
Query: 970 QSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
LVGL G S LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +
Sbjct: 129 LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI 188
Query: 1024 RNTVDT-GRTVVCTIHQ 1039
R D G TV+ H
Sbjct: 189 RELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 9e-14
Identities = 57/202 (28%), Positives = 87/202 (43%), Gaps = 38/202 (18%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT---GNITISGYPKKQ--- 909
LL+ +S RPG + A++G +GAGK+TL+ LS G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 910 ETFARISGYCEQNDIHS----PFVTVYE--SLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
AR Q HS PF TV E ++ + E D+ + + V
Sbjct: 72 AELARRRAVLPQ---HSSLSFPF-TVEEVVAMGRAPHGLSRAEDDAL-----VAAALAQV 122
Query: 964 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAA 1017
+L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 123 DLAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177
Query: 1018 IVMRTVRN-TVDTGRTVVCTIH 1038
V+R R + G V+ +H
Sbjct: 178 HVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 9e-14
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 23/198 (11%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQE 910
V+L+ L+ G + A++G SG+GK+TL++++ + G Y+ G T KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 911 TFARIS-GYCEQNDIHSPFV-----TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
F R GY QN F TV E+L L+ E R+ +E +E V
Sbjct: 72 KFRREKLGYLFQN-----FALIENETVEENLDLG--LKYKKLSKKEKREK-KKEALEKVG 123
Query: 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
L ++ + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 124 LNLKLKQKI-----YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLL 178
Query: 1025 NTVDTGRTVVCTIHQPGI 1042
D G+T++ H P +
Sbjct: 179 ELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 63/244 (25%), Positives = 99/244 (40%), Gaps = 46/244 (18%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
L D+S ++PG LLGP GKTTLL +AG SG + +G D+ PE
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 226 RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
R + Q +TV E +AF + +GV E+ R E
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GPAL 343
L+++GLE + + +SGG+++RV + P+L
Sbjct: 115 ------------------LELVGLE-----GLLNRYPHELSGGQQQRVALARALAREPSL 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LD+ ++ LK + G I + E L D I ++++G+I
Sbjct: 152 -LLLDEPLSALDAKLREELREELK-ELQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
Query: 404 VYQG 407
V G
Sbjct: 210 VQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 65/261 (24%), Positives = 101/261 (38%), Gaps = 70/261 (26%)
Query: 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219
+ + LKDV+ I+ G ++GP SGK+TLL L G LD SG V NG D+
Sbjct: 13 LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLGGLDK--PTSGEVLINGKDL 69
Query: 220 GEFVPERTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENE 272
+ + A ++ Q+ N + ++TV E + G + R E
Sbjct: 70 TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-----RRKRAAEE 124
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332
L+VLGLE + +SGG+++RV
Sbjct: 125 L-----------------------------LEVLGLEDRLL----KKKPSELSGGQQQRV 151
Query: 333 TTGEMMVGPALA-----LFMDEISTG-LDSSTTFQIVNCLKQHVHINSGTAVI----SLL 382
+ AL + DE TG LDS T +++ L++ ++ G +I
Sbjct: 152 -----AIARALINNPKIILADEP-TGNLDSKTAKEVLELLRE-LNKERGKTIIMVTHD-- 202
Query: 383 QPAPETYDLFDDIILLSDGQI 403
PE D +I L DG+I
Sbjct: 203 ---PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 73/276 (26%), Positives = 115/276 (41%), Gaps = 66/276 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
+LKDV+ I+ G +LLGP GK+TLL +AG + + SG + +G D+ + P
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 225 ERTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
+R A + Q H MTV E +AF + +GV E+ +R E
Sbjct: 74 KRGIAMVFQNYALYPH------MTVYENIAFGLKLRGVPKA-----EIDKRVKEV----- 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
K+LGLE + +SGG+R+RV +
Sbjct: 118 ------------------------AKLLGLEHLLNR-----KPLQLSGGQRQRVALARAL 148
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
V +DE + LD+ + + +K+ +H GT I + E L D I+++
Sbjct: 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKK-LHERLGTTTIYVTHDQVEAMTLADRIVVM 207
Query: 399 SDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
+DG+I G P EL ++ P VA F+
Sbjct: 208 NDGRIQQVGTPLEL---------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 1e-13
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT---GNITISGYPKKQET 911
L G+S G + AL+G +GAGKTTL+ + G G I +IT
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT------GLPP 69
Query: 912 FARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKP 967
R GY + P +TV E+LL A+ R + + +E V EL LK
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKE 124
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 1028 DTGRTVV 1034
D G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 68/285 (23%), Positives = 112/285 (39%), Gaps = 77/285 (27%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L D+S IK G + LLGP +GK+TLL +AG +GR+ NG + +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFD------ 68
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
+ ++ D +G MTV + +AF + + R +EA I+
Sbjct: 69 VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR------------KERPSEAEIRA 116
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLG-LEVCADTMVGDEMIRGISGGERKRVTTGE 336
+V L + + D +SGG+R+RV
Sbjct: 117 --------------------------RVEELLRLVQLEGLADRYPAQLSGGQRQRVA--- 147
Query: 337 MMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391
+ ALA L +DE LD+ ++ L++ +H G + + E +L
Sbjct: 148 --LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK-LHDRLGVTTVFVTHDQEEALEL 204
Query: 392 FDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
D +++L+ G+I GP + V + P + VA FL EV
Sbjct: 205 ADRVVVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 18/188 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
+NG+S + + G + L+G +GAGKTT ++ G + G I I+ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 914 RIS-GYCEQNDIHSPF--VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R+ GY Q S F +TV E++L +R + + R+ +EE++E + L +
Sbjct: 74 RLGIGYLPQE--ASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRK 128
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
S S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 1031 RTVVCTIH 1038
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK-KQETFA 913
V++N LS G L+G +GAGK+T+ +L G + G IT+ G P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 914 RIS-GYCEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETRKMFIEEVM-ELVELKPLIQ 970
R++ G Q D P TV E+LL + + + TR+ IE V+ L+E L +
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFARL-E 126
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
S + V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G
Sbjct: 127 SKADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG 185
Query: 1031 RTVVCTIH 1038
+T++ T H
Sbjct: 186 KTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 72/272 (26%), Positives = 109/272 (40%), Gaps = 63/272 (23%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGHDMGEFVP- 224
ILK V+ +K G + ++GP SGK+TL + G +V G + ++G D+ E P
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGEDILELSPD 76
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFS--ARCQGVGSRYELLTELARRENEAGIKPDPDID 282
ER A I LAF GV + L + R GI P+ +
Sbjct: 77 ERARAGI--------------FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKE 122
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR-----GISGGERKRVTTGEM 337
+ KA ++LGL+ +E + G SGGE+KR ++
Sbjct: 123 LKEKA----------------ELLGLD--------EEFLERYVNEGFSGGEKKRNEILQL 158
Query: 338 MV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396
++ P LA+ +DE +GLD + + G +I+ Q L D I
Sbjct: 159 LLLEPKLAI-LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ------RLLDYIK 211
Query: 397 -----LLSDGQIVYQGPRELVLEFFESMGFKC 423
+L DG+IV G EL E E G+
Sbjct: 212 PDKVHVLYDGRIVKSGDPELA-EELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI- 379
+RG+S +RKR+T G + LF+DE ++GLDS + IV LK+ +SG A++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA--DSGQAILC 163
Query: 380 SLLQPAPETYDLFDDIILL-SDGQIVYQG 407
++ QP+ ++ FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 2e-13
Identities = 66/278 (23%), Positives = 101/278 (36%), Gaps = 94/278 (33%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+L DVS ++PG + +LGP +GK+TLL AL+G+L SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A A + QH +L+F + V
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------------------------- 96
Query: 283 VYMKAI--ATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
V M E + + L + L + +SGGE++RV
Sbjct: 97 VAMGRAPHGLSRAEDDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRV-------- 143
Query: 341 PALA---------------LFMDEISTGLDSS---TTFQIV-NCLKQHVHINSGTAVISL 381
LA L +DE ++ LD + ++ + G AVI +
Sbjct: 144 -QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-----GLAVIVV 197
Query: 382 LQPAPETYDL------FDDIILLSDGQIVYQGPRELVL 413
L +DL D I+LL G++V G VL
Sbjct: 198 L------HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 34/221 (15%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
+ +L ++ + G A++G SG GK+TL+ +++G + T G + + G P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPVTG 69
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
GY Q D P++TV +++ L E+ +++ E EL+EL
Sbjct: 70 PGPDI--GYVFQEDALLPWLTVLDNVA------LGLELRGKSKAEARERAKELLEL---- 117
Query: 970 QSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
VGL G LS R+R+ IA L P ++ +DEP LDA + +
Sbjct: 118 ---VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174
Query: 1025 NTV-DTGRTVVCTIHQPGIDIFDAF---DELFLMKRGGQEI 1061
+T +TV+ H D+ +A D + ++ I
Sbjct: 175 RLWEETRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-13
Identities = 68/247 (27%), Positives = 103/247 (41%), Gaps = 40/247 (16%)
Query: 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 881
L S+ F+ V +S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 882 TLMDVLSG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPF-VTVYESLLY 937
TL+ +L T G I I I RI G Q+ + F T+ E++
Sbjct: 370 TLIKLLLRLYDPTSGEILIDGIDIRDISLD-SLRKRI-GIVSQDPLL--FSGTIRENIAL 425
Query: 938 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLT 990
P+ E IEE ++L I +L VG GV LS QR+RL
Sbjct: 426 GR-----PDATDE----EIEEALKLANAHEFIANLPDGYDTIVGERGV-NLSGGQRQRLA 475
Query: 991 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDE 1050
IA L+ NP I+ +DE TS LD A++ ++ + GRT + H+ D
Sbjct: 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRL--STIKNADR 532
Query: 1051 LFLMKRG 1057
+ ++ G
Sbjct: 533 IIVLDNG 539
|
Length = 567 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 67/260 (25%), Positives = 100/260 (38%), Gaps = 70/260 (26%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD--- 218
KK + + VS +KPG +T LLGP +GKTT L LAG L+ +G T +G D
Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVK 71
Query: 219 --------MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE 270
+G FV + T Y +T RE L + A G+
Sbjct: 72 EPAEARRRLG-FVSDSTGLY--------DRLTARENLEYFAGLYGL-------------- 108
Query: 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERK 330
+G E + LG+E D VG G S G R+
Sbjct: 109 --------------------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQ 143
Query: 331 RVTTGEMMVGPALALFMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387
+V +V L +DE +TGLD + + + L+ G ++ E
Sbjct: 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-----LGKCILFSTHIMQE 198
Query: 388 TYDLFDDIILLSDGQIVYQG 407
L D +++L G++VY+G
Sbjct: 199 VERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-13
Identities = 66/249 (26%), Positives = 109/249 (43%), Gaps = 47/249 (18%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
L DV+ + G + LLGP SGK+TLL +AG L+ SGR+ NG D
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATRVHAR 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R ++ QH +TVR+ +AF R+ +A IK
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFGLE--------------IRKHPKAKIK-------- 108
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
A V + L+++ LE +GD +SGG+R+RV +
Sbjct: 109 ----------ARV--EELLELVQLE-----GLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQ-HVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE LD+ ++ + L++ H ++ T ++ Q E ++ D I+++S+G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ--EEAMEVADRIVVMSNGKI 209
Query: 404 VYQG-PREL 411
G P E+
Sbjct: 210 EQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 24/212 (11%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI----TGNITISGYPKKQETF 912
L+ +S + G + L+G +GAGKTT + ++ G I +G + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLR-LPPEVDSETRKMFIEEVMELVELKPLIQS 971
RI GY + P + V + L+Y A L+ L E E R+ I+E +E +EL
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1031
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 1032 TVVCTIHQPGIDIFDAF-DELFLMKRGGQEIY 1062
TV+ + HQ +++ + D + L+ +G +Y
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQETF 912
LN LS + PG L L+G +GAGKTTLMDV++G R G G+ ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 913 ARISGYCEQNDIHSPF--VTVYESLLY------SAWLRLPPEVDSETRKMFIEEVMELVE 964
AR G + + F +TV E+L S + L + +E R+ I+E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
L L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT--GNITISGYPKKQETF 912
L G+S G + +G +GAGKTT + +LSG + T G + G + + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP---WKRRKKFL 93
Query: 913 ARISGYCEQNDIHSPFVTVYESL-LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
RI Q + V +S L +A LPP + +E+ EL++L+ L+ +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRL----DELSELLDLEELLDT 149
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1030
V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G
Sbjct: 150 -----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 1031 RTVVCTIH 1038
TV+ T H
Sbjct: 205 TTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 6e-13
Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 60/254 (23%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
KK L VS + PG M LLGP +GKTTL+ LA S SG + +G D+
Sbjct: 11 GKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVL 64
Query: 221 EFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
+ + R Y+ Q TVRE L + A +G+ P
Sbjct: 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI--------------------PS 104
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
++ + D L+++ L + I +SGG R+RV + +
Sbjct: 105 KEVK---ARV-----------DEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQAL 145
Query: 339 VG-PALALFMDEISTGLDSSTTFQIVNCLKQ----HVHINSGTAVISLLQPAPETYDLFD 393
VG P++ L +DE + GLD + N L + + I S T ++ ++ L +
Sbjct: 146 VGDPSI-LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILS-THIVEDVE------SLCN 197
Query: 394 DIILLSDGQIVYQG 407
+ +L+ G++V++G
Sbjct: 198 QVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT--GNITISGYPKKQETF 912
L+ +S + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 913 ARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
+ Q+ + S P +T+ E + + E RK + ++ V L +
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPEEVL 139
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-13
Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 25/220 (11%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ--- 909
K L G+S + + G A++G SG+GK+TL ++ G +G++ + G KQ
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDR 387
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
ETF + GY Q D+ TV E++ R D E I E +L + LI
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADPEK----IIEAAKLAGVHELI 437
Query: 970 QSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
L +G PG + LS QR+R+ +A L +P ++ +DEP S LD +
Sbjct: 438 LRLPDGYDTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA 496
Query: 1023 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062
++ G TVV H+P + D++ +++ G +
Sbjct: 497 IKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 6e-13
Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS------GY 918
RPG L+GV+GAGKTT +L+G T +G+ T++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978
C Q D +T E L A LR P + IE+V ++ L SL
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEE-------IEKVANW-SIQSLGLSLYADRLA 2068
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 9e-13
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L G++ + G +TA++G +GAGK+TL L+G + + G I + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 915 IS-GYCEQNDIHSPF-VTVYESLLYSAW-LRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
S G Q+ + F +VY+ + + A L+LP + E RK ++ ++ ++ L
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP---EDEVRKR-VDNALKRTGIEHLKDK 137
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1030
LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 -----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 1031 RTVVCTIHQPGIDIFDAF-DELFLMKRG 1057
T++ H IDI + D +F+MK G
Sbjct: 193 LTIIIATHD--IDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-12
Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 11/170 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
++ +S R G L+G SG+GK+TL +L+G + G I + +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 914 RISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
R Q+ S P +TV + L LR+ R+ + E++ELV L P
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEFLD 424
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
P LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 425 RY--PH--ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 34/203 (16%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYP--- 906
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 907 KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVME----- 961
R G Q E++L++ +R + M +E V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 962 -----LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 1017 AIVMRTVRNTVDTGRTVVCTIHQ 1039
+MR + + GRTV+ H+
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHR 196
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 66.6 bits (164), Expect = 2e-12
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
F+++ F+Y P R K +LKDVS IKPG ++GP SGK+TLL L D +
Sbjct: 2 EFKNVSFSY----PGRPK--PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT 55
Query: 206 LKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRE 245
SG + +G D+ + E + AY+ Q D + T+RE
Sbjct: 56 ---SGEILIDGVDLRDLDLESLRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 2e-12
Identities = 58/202 (28%), Positives = 81/202 (40%), Gaps = 44/202 (21%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 909
L GLS PG AL+G SG GK+T++ D SG I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE---------ILLDGVDIRD 69
Query: 910 ---ETFARISGYCEQNDIHSP---FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
G Q P T+ E++ Y P D E +EE +
Sbjct: 70 LNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGK----PDATDEE-----VEEAAKKA 116
Query: 964 ELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016
+ I SL VG S LS Q++R+ IA L+ NP I+ +DE TS LDA +
Sbjct: 117 NIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
Query: 1017 AIVMRTVRNTVDTGRTVVCTIH 1038
+V + + GRT + H
Sbjct: 176 KLVQEAL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 845 KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNIT 901
+ L+ +S G + ++G SGAGK+TL+ +++ R T G +
Sbjct: 10 TFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQD 69
Query: 902 ISGYPKKQ-ETFARISGYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE 958
++ + + + G Q N + S TV+E++ + P E+ + +
Sbjct: 70 LTALSEAELRQLRQKIGMIFQHFNLLSSR--TVFENVAF------PLELAGVPKAEIKQR 121
Query: 959 VMELVELKPLIQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
V EL+EL VGL + LS Q++R+ IA L NP I+ DE TS LD
Sbjct: 122 VAELLEL-------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
|
Length = 339 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 28/170 (16%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
LN LS PG L ++G +GAGKTT+MDV++G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 914 RISGYCE--QNDIHSPFVTVYESLLYSA----------WLRLPPEVDSETRKMFIEEVME 961
R +G Q +TV+E+L + + RL E IEEV+E
Sbjct: 76 R-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----IEEVLE 129
Query: 962 LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+ L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 130 TIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
+ +L GLS G + G +G GKTTL+ +L+G R G + N T +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ R Y P ++ E+L + W + IE+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1030 GRTVVCTIHQP 1040
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 28/215 (13%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET---F 912
+LN LS + G +TAL+G +G GK+TL+ + T +G + + P +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 913 ARISGYCEQNDIHSPFVTVYESLLY------SAWLRLPPEVDSETRKMFIEEVMELVELK 966
AR Q+ + +TV E + Y S W RL S + + ME +
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL-----SAEDNARVNQAMEQTRIN 129
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 1027 VDTGRTVVCTIHQPGIDIFDA---FDELFLMKRGG 1058
G+TVV +H D+ A D L ++ G
Sbjct: 185 NTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 75/272 (27%), Positives = 114/272 (41%), Gaps = 59/272 (21%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS-----LKVSGRVTYNG 216
++H IL+D+S I+PGR+T LLG +GK+TLL ALAG L +V+G VT NG
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 217 HDMGEFVPERTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273
+ R A A + Q + AFSAR + RY ARR
Sbjct: 71 EPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRY----PHARRAGAL 118
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333
+ D ++ +A+A G A +VG + + +SGGE RV
Sbjct: 119 THR---DGEIAWQALALAG-------------------ATALVGRD-VTTLSGGELARVQ 155
Query: 334 TGEMM---------VGPALALFMDEISTGLDSSTTFQI---VNCLKQHVHINSGTAVISL 381
++ P L +DE + LD + ++ V L + ++ V+++
Sbjct: 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNL----GVLAI 211
Query: 382 LQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
+ D I +L+DG IV G VL
Sbjct: 212 VHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 65/258 (25%), Positives = 103/258 (39%), Gaps = 69/258 (26%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L DVS ++PGR LLGP +GK+TL L + G+++ GHD+ P
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 228 AAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
A + Q +++VR+ L + A G L+R E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------ 116
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GPAL 343
L LGL A+ D+ +R ++GG R+RV ++ PAL
Sbjct: 117 ------------------LARLGL---AER--ADDKVRELNGGHRRRVEIARALLHRPAL 153
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL---------QPAPETYDLFDD 394
L +DE + GLD ++ I HV + +S+L + D
Sbjct: 154 -LLLDEPTVGLDPASRAAIT----AHVRALARDQGLSVLWATHLVDEIEAD-------DR 201
Query: 395 IILLSDGQIVYQG-PREL 411
+++L G+++ G EL
Sbjct: 202 LVVLHRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-12
Identities = 61/251 (24%), Positives = 93/251 (37%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG---HDMGEF 222
I+ V PG +T LLGP SGK+TLL LAG L +G V G H +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R A + Q + +TVR+ +A G P
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVAL------------------------GRIP----- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ A + + D L L AD + +SGGER+RV +
Sbjct: 103 -HRSLWAGDSPHDAAVVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEP 156
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + + +++ +G V++ L D +++L G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRELA--ATGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 403 IVYQGPRELVL 413
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 3e-12
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 866 PGV-LTALMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQ-ETFARISGYC 919
PG +TA+ G SG+GKTTL+ +++G R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 920 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979
Q P ++V +L Y R++ E V+EL+ + L+ L G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG----- 130
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-12
Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 26/199 (13%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS--GRKTGGYIT-GNITISGYP--KKQ 909
+L+G+ +PG + A++G SG+GKTTL+ ++ + G I G+ITI +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 910 ETFARI----SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
+ R G+ QN P TV E+++ P V E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELL-- 129
Query: 966 KPLIQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1021 RTVRNTVDTGRTVVCTIHQ 1039
T+R RT+V H+
Sbjct: 185 NTIRQLAQEKRTMVIVTHE 203
|
Length = 250 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 3e-12
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 32/193 (16%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L+G+S RPG + AL+G +GAGK+TLM +LSG G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----EILIDGKP------VA 73
Query: 915 ISGYCEQND-----IH-----SPFVTVYESLLYSAWLRLP-PEVDSETRKMFIE--EVME 961
S + +H P ++V E++ +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 962 LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
+ L +LVG LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186
Query: 1022 TVRNTVDTGRTVV 1034
+R G ++
Sbjct: 187 LIRRLKAQGVAII 199
|
Length = 500 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITI-----SGYPKKQET 911
L ++ PG + L G SG+GKTTL+ ++ G ++ G++ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 912 FARIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R + GY Q F+T +++ + L L P + + + ++E V L +
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLGDHLD 136
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1029
P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 137 YY---PH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G T++ H I D D + M+ G
Sbjct: 192 GCTILIVTHDN--RILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 66/250 (26%), Positives = 106/250 (42%), Gaps = 49/250 (19%)
Query: 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS----SLKVSGRVTYN 215
S +K +L D++ I PG + +L GP SGKTT LL L G L S SLKV G+
Sbjct: 15 SLRKQ--VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQ-ELY 70
Query: 216 GHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
G E V R YI Q N +G +T R+ + + EL L+ +E
Sbjct: 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL---------ELQPNLSYQEARE- 120
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
+A A L+ +GL D + D +SGG+++RV
Sbjct: 121 -----------RARA------------MLEAVGLG---DHL--DYYPHNLSGGQKQRVAI 152
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
+V + DE + LDS + +V +++ G ++ ++ D+ D
Sbjct: 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDVADR 210
Query: 395 IILLSDGQIV 404
I+ + DG+++
Sbjct: 211 IVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 41/235 (17%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKK 908
+L +S G A++G SG+GK+T++ DV SG I I G +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILIDGQDIR 66
Query: 909 ---QETFARISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
++ R G Q ND T+ ++ Y EV + I +
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND------TIGYNIRYGRPDATDEEVIEAAKAAQIHD-- 118
Query: 961 ELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
+++ ++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1021 RTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLIS 1075
+R V GRT + H+ I +A D++ ++K G + G H +L++
Sbjct: 178 AALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG----RIVERGTHE-ELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 67/267 (25%), Positives = 116/267 (43%), Gaps = 52/267 (19%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-R 226
LK+VS ++ G ++LGP SGK+ LL +AG + SG++ NG D+ PE R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+Y+ Q+ MTV + +A+ + + V +I+ +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKV--------------------DKKEIERKVL 111
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
IA ++LG+ + + +SGGE++RV +V L
Sbjct: 112 EIA--------------EMLGI-----DHLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE + LD T ++ LK+ + G V+ + E + L D + ++ +G+++
Sbjct: 153 LDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
Query: 407 GPRELVLEFFESMGFKCPKRKGVADFL 433
G E V FK PK + VA+FL
Sbjct: 212 GKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 6e-12
Identities = 70/263 (26%), Positives = 111/263 (42%), Gaps = 50/263 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM----GE 221
LKDV+ I G M ++GP +GK+TLL +L G +D + SG + +NG + G+
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 222 FVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ + R I Q N + ++V E + G S + L L +E++A
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRL--GYTSTWRSLFGLFSKEDKAQA---- 128
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
+ A+ G I D + A T+ SGG+++RV +V
Sbjct: 129 -----LDALERVG-----ILDKAYQR------ASTL---------SGGQQQRVAIARALV 163
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL----FDDI 395
+ DE LD + ++++ LK ++ G VI L DL D I
Sbjct: 164 QQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLH----QVDLAKKYADRI 218
Query: 396 ILLSDGQIVYQGP-RELVLEFFE 417
I L G+IV+ GP EL E +
Sbjct: 219 IGLKAGRIVFDGPASELTDEALD 241
|
Length = 258 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-12
Identities = 47/209 (22%), Positives = 77/209 (36%), Gaps = 57/209 (27%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ---E 910
+L +S + PG A++G SG+GK+TL ++ G R T G + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPN 72
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
GY Q+D ++F + E +
Sbjct: 73 ELGDHVGYLPQDD-----------------------------ELFSGSIAENI------- 96
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 1031 RTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059
T + H+P + D + +++ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 7e-12
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
T L D+S ++ G + LLGP +GKTTL+ + G L SG + G D+ +
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKE 67
Query: 223 VPE--RTAAYISQHDNHIGEMTVRETLAFS 250
E R Y+ + + +TVRE L S
Sbjct: 68 PEEVKRRIGYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 7e-12
Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 57/255 (22%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
L D++ IK G++T L+G +GK+TLL L G L + G + NG D+ + PE
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ +++SQ+ ++ T+RE + LL + E
Sbjct: 392 AWRKQISWVSQN-PYLFAGTIRENI--------------LLARPDASDEE---------- 426
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ A +A + ++ K GL DT++G+ G+SGG+ +R+ ++ PA
Sbjct: 427 --IIAAL---DQAGL-LEFVPKPDGL----DTVIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-----FDDIIL 397
L +DE + LD+ T I+ L++ V+ + T+ L D I++
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQALQEL---AKQKTVLVI------THRLEDAADADRIVV 526
Query: 398 LSDGQIVYQG-PREL 411
L +G++V QG EL
Sbjct: 527 LDNGRLVEQGTHEEL 541
|
Length = 559 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 7e-12
Identities = 54/194 (27%), Positives = 77/194 (39%), Gaps = 39/194 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+L VS + PG +LGP SGK+TLL LAG LD G VT +G + +
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 227 TAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+S D H+ + TVRE L + + EL L R G+
Sbjct: 407 VRRRVSVCAQDAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWLR---- 455
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
L DT++G E +SGGER+R+ ++ A
Sbjct: 456 ----------------------ALPDGLDTVLG-EGGARLSGGERQRLALARALLADAPI 492
Query: 345 LFMDEISTGLDSST 358
L +DE + LD+ T
Sbjct: 493 LLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISG--YPKKQET 911
LN +S G ++G SG+GK+TL +L+G + + +G+I + G K+
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 912 --FARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
F R Q+ S P TV L S LR S+ R I E+++ V L P
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQR---IAELLDQVGLPP 132
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
L P LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 133 SF--LDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 7e-12
Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 22/220 (10%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ET 911
LL+ LS F G +T L+G +G+GK+TL+ +L GR G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEVDSETRKMFIEEVMELVELK 966
FAR Y Q + +TV E + A R P + R+ +EE + LV LK
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELV---AIGRYPWHGALGRFGAADREK-VEEAISLVGLK 138
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 1025
PL L V LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 1026 TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
+ + G TV+ +H I++ + + + RGG+ I G
Sbjct: 194 SQERGLTVIAVLHD--INMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 9e-12
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 14/211 (6%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGGYITGNITISGYPKKQETFA 913
+L LS PG A++G +GAGKTTL+ +L+G + G +T G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 914 RISGYC--EQNDIHSPFVTVYESLL--YSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ G E ++ TV + +L + A + + E + + ++EL+ K L
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--NTV 1027
G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 166 DRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058
++ H +I F L+K G
Sbjct: 221 PGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 44/240 (18%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
T L D++ I G +LLGP GKTT L +AG + + SGR+ G D+ + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R A + Q+ MTV + +AF + + V P +ID
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV--------------------PKDEIDER 110
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
++ +A ++L +E + D + +SGG+R+RV G +V
Sbjct: 111 VREVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
MDE + LD+ Q+ LK+ + GT I + E + D I +++DGQI
Sbjct: 152 FLMDEPLSNLDAKLRVQMRAELKR-LQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 12/186 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L +S G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G Q+ P TVYE++ LP V + + V E+++L L
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVA------LPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
LP S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1033 VVCTIH 1038
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 9e-12
Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 19/190 (10%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK-QETFARI 915
L+ +S R G + ALMG +GAGK+TL+ +LSG G+I I G + T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 916 -SG----YCEQNDIH-SPFVTVYESLLYSAWL-RLPPEVDSETRKMFIEEVMELVELKPL 968
+G Y E +H P +TV E+L +L +LP + R++ E E +L+ L
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEARE--QLEHL 128
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
+ + LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
Query: 1029 TGRTVVCTIH 1038
GR ++ H
Sbjct: 189 EGRVILYVSH 198
|
Length = 501 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 9e-12
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 12/186 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFA 913
L+ +S R G L G SGAGKTTL+ +L G T G ++ +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G Q+ P TVYE++ +R E + + R + + V L+ +
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEHKADAF 134
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G T
Sbjct: 135 ---PEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189
Query: 1033 VVCTIH 1038
V+ H
Sbjct: 190 VIVATH 195
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 65/260 (25%), Positives = 104/260 (40%), Gaps = 63/260 (24%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
LK+++ I PG ++GP +GK+TLL + ++ S SG + G D+ + +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 226 ------RTAAYISQHDNHIGEMTVRET-----LAFSARCQGVGSRYELLTELARRENEAG 274
R I QH N I +TV E L + + + R+
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRF-------------- 118
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
+ D K A E + D + AD + SGG+++RV
Sbjct: 119 --SEED-----KERALSALERVGLADKAYQR------ADQL---------SGGQQQRVAI 156
Query: 335 GE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG-TAVISLLQPAPETYDL- 391
+ P L L DE LD T+ Q+++ LK+ ++ G T +I+L Q DL
Sbjct: 157 ARALAQQPDLIL-ADEPIASLDPKTSKQVMDYLKR-INKEDGITVIINLHQ-----VDLA 209
Query: 392 ---FDDIILLSDGQIVYQGP 408
D I+ L G+IV+ G
Sbjct: 210 KKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 56/218 (25%), Positives = 83/218 (38%), Gaps = 51/218 (23%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-IT-GNITISG---- 904
E K +L G++ + G + A+MG +G+GK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 905 -----------------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAW--LRLPP 945
YP I G VT L +A R
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTN-SDFLRAAMNARRGAR 113
Query: 946 EVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1004
+ E K ++E EL+ L ++ V G S ++KR I L+ P + +
Sbjct: 114 GILPEFIK-ELKEKAELLGLDEEFLERYVNE----GFSGGEKKRNEILQLLLLEPKLAIL 168
Query: 1005 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
DEP SGLD A IV + + GR V+ H +
Sbjct: 169 DEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-11
Identities = 70/286 (24%), Positives = 108/286 (37%), Gaps = 87/286 (30%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGH 217
+ + ++DVS ++PG + ++G SGK+TL LAL G L ++ SG V +G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 218 DMGEFVPE-------RTAAYISQH-----------DNHIGEMTVRETLAFSARCQGVGSR 259
D+ + A I Q + I E
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREA------------------ 117
Query: 260 YELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319
L + +R E +A+ L+ +GL D D
Sbjct: 118 LRLHGKGSRAEARK------------RAVE------------LLEQVGLP---DPERRDR 150
Query: 320 MIRGISGGERKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINS 374
+SGG R+RV M+ ALA L DE +T LD +T QI++ LK
Sbjct: 151 YPHQLSGGMRQRV-----MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQ-REL 204
Query: 375 GTAVISLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
G AV+ + T+DL D ++++ G+IV GP E +L
Sbjct: 205 GMAVLFI------THDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 27/214 (12%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP----KKQE 910
V+L+ +S G +T+++G +GAGK+TL+ ++S + +G ITI G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS--RLLKKDSGEITIDGLELTSTPSKE 72
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP---PEVDSETRKMFIEEVMELVELKP 967
++S ++N I+S TV + + + R P + E R++ I E +E + L+
Sbjct: 73 LAKKLSILKQENHINSRL-TVRDLVGFG---RFPYSQGRLTKEDRRI-INEAIEYLHLED 127
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
L + LS QR+R IA+ L + + +DEP + LD + + +M+ +R
Sbjct: 128 LSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA 182
Query: 1028 DT-GRTVVCTIHQPGIDIFDA---FDELFLMKRG 1057
D G+T+V +H DI A D + +K G
Sbjct: 183 DELGKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 1e-11
Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 61/180 (33%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L+G+S + R G + AL+G +GAGK+TLM +LSG + G I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS----GEILVDGKEV------- 64
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
SP + R+ I V +L
Sbjct: 65 --------SFASP---------------------RDARRAGIAMVYQL------------ 83
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
S +R+ + IA L N ++ +DEPT+ L + + +R G V+
Sbjct: 84 -------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 18/182 (9%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQND-IH 925
G + AL+GV+G+GK+TL L G +G I+I G P +Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 926 SPFVTVYESLL------YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979
F + E ++ + WLR + D + + + V++ +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1039
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201
Query: 1040 PG 1041
G
Sbjct: 202 LG 203
|
Length = 272 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 68/258 (26%), Positives = 105/258 (40%), Gaps = 49/258 (18%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-VPER 226
L DVS I G + LLGP SGKTTLL +AG L+ SG + + G D + V ER
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LERP--DSGTILFGGEDATDVPVQER 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
++ QH MTV + +AF R + + R EA I+
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPR----------SERPPEAEIR---------- 114
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
A V LK++ L+ AD +SGG+R+RV + L
Sbjct: 115 --------AKV--HELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI--- 403
+DE LD+ ++ L++ +H + + E ++ D +++++ G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRR-LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 404 -----VYQGPR-ELVLEF 415
VY P V F
Sbjct: 219 GTPDEVYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 36/228 (15%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L+ +S G L AL+G SG+GKTTL+ +++G R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R G+ Q+ +TV++++ + LR+ P + +V EL++ LV
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLK-------LV 124
Query: 974 GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
L + + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 125 QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184
Query: 1029 -TGRTVVCTIHQPGIDIFDAF---DELFLMKRG-------GQEIYVGP 1065
T V H D +A D + +M +G E+Y P
Sbjct: 185 ELHVTTVFVTH----DQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 1e-11
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 11/175 (6%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFARISGYCEQND 923
G + L+G +GAGKTT ++ G R G I + IS P I GY Q
Sbjct: 29 GEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI-GYLPQEA 87
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983
++VY++L+ A L++ ++ +E R+ E+ME ++ L S+ G S LS
Sbjct: 88 SIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM----GQS-LSG 140
Query: 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
+R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T H
Sbjct: 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195
|
Length = 241 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-11
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 881 TTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS----GYCEQNDIHSPFVTVYESLL 936
+TL+ +++G +G I + G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 937 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV 996
+ + EE +E V L + V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 997 ANPSIIFMDEPTS 1009
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 59/256 (23%), Positives = 99/256 (38%), Gaps = 61/256 (23%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223
+ L+ VS ++ G + LLG +GKTTLL + G + SGR+ ++G D+
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 224 PERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
P A AY+ + +TV E LL R ++ + D
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEEN---------------LLLGAYARRDKEAQERDL 116
Query: 280 DIDVYMKAIATEGQEANVITDYY--LKVLGLEVCADTMVGDEMIRG----ISGGERKRVT 333
+ +VY + + LK E +SGGE++ +
Sbjct: 117 E-EVY---------------ELFPRLK--------------ERRNQRAGTLSGGEQQMLA 146
Query: 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392
+M P L L +DE S GL +I +K+ + G ++ + Q A ++
Sbjct: 147 IARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFALEIA 204
Query: 393 DDIILLSDGQIVYQGP 408
D +L +G+IV G
Sbjct: 205 DRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 11/149 (7%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFA-RISGYCEQNDIH 925
G L AL+G SG+GK+TL+ +++G + +G I ++G + R G+ Q+
Sbjct: 26 GSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRKIGFVFQHYAL 83
Query: 926 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985
+TV +++ + +R P K +EE++ELV+L+ L P + LS Q
Sbjct: 84 FKHLTVRDNIAFGLEIRKHP---KAKIKARVEELLELVQLEGLGDRY---P--NQLSGGQ 135
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
R+R+ +A L P ++ +DEP LDA+
Sbjct: 136 RQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-11
Identities = 73/282 (25%), Positives = 121/282 (42%), Gaps = 74/282 (26%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F ++ F Y P ++ L +VS I+PG ++G SGK+TLL L G +
Sbjct: 466 FRNVSFAY----PGQETP--ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT- 518
Query: 207 KVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
G V +G D+ + P R Y+ Q D + T+R+ +A A + E +
Sbjct: 519 --EGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLFYGTLRDNIALGAP----YADDEEI 571
Query: 264 TELARRENEAG----IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319
A AG ++ PD GL D +G E
Sbjct: 572 LRAAEL---AGVTEFVRRHPD--------------------------GL----DMQIG-E 597
Query: 320 MIRGISGGERKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV 378
R +SGG+R+ V ++ P + L +DE ++ +D+ + + + LK+ + +G +
Sbjct: 598 RGRSLSGGQRQAVALARALLRDPPI-LLLDEPTSAMDNRSEERFKDRLKRWL---AGKTL 653
Query: 379 I------SLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+ SLL DL D II++ +G+IV GP++ VLE
Sbjct: 654 VLVTHRTSLL-------DLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 26/218 (11%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE 910
D +L +S G AL+G SG+GK+TL++++ + +G I I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 911 TFA---RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
T A R G Q D+ TV E++ Y P E +EE
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----PGATREE----VEEAARAANAHE 119
Query: 968 LIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
I L +G GV LS QR+R+ IA L+ +P I+ +DE TS LD + +V
Sbjct: 120 FIMELPEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 1021 RTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058
+ + RT H+ I +A D + +++ G
Sbjct: 179 AALERLMK-NRTTFVIAHRLST-IENA-DRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 27/202 (13%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP----KKQETF 912
L + G A++G SG+GK+TL+ +L+G G+IT++G +Q
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQALR 411
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
IS ++ + S T+ ++L + P+ E + ++ V L+ L++S
Sbjct: 412 ETISVLTQRVHLFSG--TLRDNLRLAN-----PDASDEE----LWAALQQVGLEKLLESA 460
Query: 973 -------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+G G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 461 PDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE 519
Query: 1026 TVDTGRTVV-CTIHQPGIDIFD 1046
+ G+T++ T G++ D
Sbjct: 520 HAE-GKTLLMVTHRLRGLERMD 540
|
Length = 573 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-11
Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 26/215 (12%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITG-NITISGYPKKQETFARISGYCEQNDIH 925
G + AL+G SG+GK+TL+ LSG TG G +I + G ++E R++ ++ +
Sbjct: 30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRLARDIRKSRAN 87
Query: 926 SPFV----------TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
+ ++ +V E++L A P T + + L+ L + VG+
Sbjct: 88 TGYIFQQFNLVNRLSVLENVLIGALGSTPF---WRTCFSWFTREQKQRALQALTR--VGM 142
Query: 976 PG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 1029
VS LS Q++R+ IA L+ +I DEP + LD +A IVM T+R+
Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
G TVV T+HQ +D + E + R G Y G
Sbjct: 203 GITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-11
Identities = 66/252 (26%), Positives = 101/252 (40%), Gaps = 47/252 (18%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE- 225
+L+D+S I PG ++G SGK+TLL L G GR+ +G D+ +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLAS 544
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD-PDID 282
R Y+ Q D + ++RE +A P+ D +
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN-------------------------PEATDEE 578
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ A E + L + DT VG E +SGG+R+R+ ++
Sbjct: 579 IIEAAQLAGAHEF---------IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKP 628
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD T I+ L Q I G VI ++ T D II+L G+
Sbjct: 629 KILLLDEATSALDPETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGK 684
Query: 403 IVYQGPRELVLE 414
IV QG E +L
Sbjct: 685 IVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 73/276 (26%), Positives = 112/276 (40%), Gaps = 65/276 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T + D+S IK G LLGP GKTTLL +AG S SG + +G D+ + PE
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
R + Q H MTV E +AF + + + E+ R EA
Sbjct: 76 KRPIGMVFQSYALFPH------MTVEENVAFGLKVRKKLKK----AEIKARVEEA----- 120
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
L+++GLE AD +SGG+++RV +
Sbjct: 121 ------------------------LELVGLEGFADRKPHQ-----LSGGQQQRVALARAL 151
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
V L +DE + LD+ Q+ LK+ + G + + E + D I ++
Sbjct: 152 VPEPKVLLLDEPLSALDAKLREQMRKELKE-LQRELGITFVYVTHDQEEALAMSDRIAVM 210
Query: 399 SDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
+DG+I G P E+ ++ P + VADF+
Sbjct: 211 NDGRIEQVGTPEEI---------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 73/275 (26%), Positives = 118/275 (42%), Gaps = 58/275 (21%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
FE++ F Y +LKDVS I G+ ++GP SGK+T+L L D S
Sbjct: 2 EFENVTFAY-------DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS 54
Query: 206 LKVSGRVTYNGHDMGEFVPERTAAYISQHD--NHIGEMTVRETLAFSARCQGVGSRYELL 263
SG + +G D+ E ++ IG + ++T+ F+
Sbjct: 55 ---SGSILIDGQDIRE---------VTLDSLRRAIG-VVPQDTVLFNDTI---------- 91
Query: 264 TELARRENEAGIKPDP-DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322
N +PD D +V A A + I D K++ DT+VG+ R
Sbjct: 92 -----GYNIRYGRPDATDEEVIEAAKAAQ------IHD---KIMRFPDGYDTIVGE---R 134
Query: 323 G--ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
G +SGGE++RV ++ L +DE ++ LD+ T +I L+ ++ G I
Sbjct: 135 GLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD---VSKGRTTIV 191
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLE 414
+ + D II+L DG+IV +G EL+ +
Sbjct: 192 IAHRLSTIVNA-DKIIVLKDGRIVERGTHEELLAK 225
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 21/193 (10%)
Query: 871 ALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 927
++G +G+GK+ L++ ++G +G + I+ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM---ELVELKPLIQSLVGLPGVSGLSTE 984
+TVY+++ Y R + + E + + I E++ L+ KP LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDI 1044
+++R+ IA LV NP I+ +DEP S LD R + ++ V + +
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 1045 FDAFDELFLMKRG 1057
+ D++ +M G
Sbjct: 194 WALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 35/248 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
++ +S PG + L+G +GAGKTT ++ G G IT +G P QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 917 GYC-EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-LKPLIQSLVG 974
GY E+ ++ P +TV + L Y A L+ P+ + + + E +E+V I+ L
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKEL-- 131
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
S ++++ ++ P ++ +DEP SGLD ++ + + G T++
Sbjct: 132 -------SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATII 184
Query: 1035 CTIHQPGIDIFDAFDEL---FLMKRGGQEIYVGPL-------GR-----HSCQLISYFEA 1079
+ H+ + +EL LM + GQ + G + G+ S +
Sbjct: 185 FSSHR-----MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSLEELAN 239
Query: 1080 IPGVEKIK 1087
IPG+ KI
Sbjct: 240 IPGILKIT 247
|
Length = 300 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 60/260 (23%), Positives = 99/260 (38%), Gaps = 61/260 (23%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHD---MGE 221
LKD+S I G +T L+GP GK+TLL L L G V +G D +
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 222 FVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
V E R + Q N ++ + +A+ R G+ + EL R EA
Sbjct: 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA------ 123
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGL--EVCADTMVGDEMIRGISGGERKRVTTGE- 336
L+ L EV G+SGG+++R+
Sbjct: 124 -----------------------LRKAALWDEVKDRLHA-----LGLSGGQQQRLCLARA 155
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----SLLQPAPETYDLF 392
+ P + L +DE ++ LD +T +I + + + ++ ++ Q A +
Sbjct: 156 LANEPEV-LLLDEPTSALDPISTAKIEELIAE---LKKEYTIVIVTHNMQQAA----RVA 207
Query: 393 DDIILLSDGQIVYQGPRELV 412
D L +G++V GP E +
Sbjct: 208 DRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 4e-11
Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 33/220 (15%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISG----Y 905
D L G++ G + AL+G +GAGK+TL +G + T +G + I G Y
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKY 68
Query: 906 PKKQETFARIS-GYCEQN---DIHSPFVTVYESLLYSAW-LRLPPEVDSETR-KMFIEEV 959
KK R + G QN + +P TV E + + L L E + E R K ++ V
Sbjct: 69 DKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE-EVEKRVKEALKAV 125
Query: 960 -MELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
ME E KP P LS Q+KR+ IA L P II +DEPTSGLD A+
Sbjct: 126 GMEGFENKP--------P--HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 1019 VMRTVRNTVDTGRTVVCTIHQPGIDIFDAF-DELFLMKRG 1057
+M+ + + G T++ + H +D+ + D++++M G
Sbjct: 176 IMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-11
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 25/166 (15%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L +S + + G L+G SG GKTTL+ +++G R+T G I G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
G Q+ P +TV +++ Y + R M EV E V + LV
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAE---LLDLV 122
Query: 974 GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
GLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 123 GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 5e-11
Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 44/212 (20%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM-GEFV 223
L L DVS ++PG + L+GP +GKTTL ++G L + SG V ++G D+ G
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 224 PERTAAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
E I Q E+TV E + +A+ + + LL ARRE
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREER-------- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE---- 336
EA + L+ +GL AD G+ +S G+++R+ E
Sbjct: 119 -------------EARERAEELLERVGLADLADRPAGE-----LSYGQQRRL---EIARA 157
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQ 368
+ P L L +DE + GL+ T ++ +++
Sbjct: 158 LATDPKL-LLLDEPAAGLNPEETEELAELIRE 188
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 5e-11
Identities = 66/279 (23%), Positives = 100/279 (35%), Gaps = 81/279 (29%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL V + G + +LG SGK+TLL + G L G + +G D+ + E
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGEILIDGEDIPQLSEE 78
Query: 226 RTAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ Q +TV E +AF R E P+
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR-------------------EHTKLPES 119
Query: 280 DID--VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
I V MK L+++GL D +SGG RKRV
Sbjct: 120 LIRELVLMK----------------LELVGL----RGAAADLYPSELSGGMRKRV----- 154
Query: 338 MVGPALA---------LFMDEISTGLDSSTTFQIVNCLKQHVHINS--GTAVISLLQPAP 386
ALA LF+DE ++GLD + I ++ +N G VI +
Sbjct: 155 ----ALARAIALDPELLFLDEPTSGLDPISAGVIDELIR---ELNDALGLTVIMVTHDLD 207
Query: 387 ETYDLFDDIILLSDGQIVYQGPRE--------LVLEFFE 417
+ D + +L+DG+++ +G E V +FF
Sbjct: 208 SLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFN 246
|
Length = 263 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-11
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 19/158 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
+N +S + L+G +GAGK+TL+ +++G R T +G I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
I E ++ +T E+L L P DS I+EV+ +V+L + G
Sbjct: 72 IGSLIESPPLYEN-LTARENLKVHTTLLGLP--DSR-----IDEVLNIVDL-----TNTG 118
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-11
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 36/253 (14%)
Query: 815 PKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMG 874
M LP P E + + Q+ +L G+S A + G ++G
Sbjct: 321 AAAERMPLP-APQGALSVERLTAAPPGQKK----------PILKGISFALQAGEALGIIG 369
Query: 875 VSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTV 931
SG+GK+TL +L G +G++ + G +Q E R GY Q D+ T+
Sbjct: 370 PSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLGRHIGYLPQ-DVELFDGTI 426
Query: 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTE 984
E++ R E D E + E L + LI L +G G + LS
Sbjct: 427 AENIA-----RFGEEADPEK----VIEAARLAGVHELILRLPQGYDTRIG-EGGATLSGG 476
Query: 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDI 1044
QR+R+ +A L +P ++ +DEP S LD+ A + + G TVV H+P
Sbjct: 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--A 534
Query: 1045 FDAFDELFLMKRG 1057
+ D++ +++ G
Sbjct: 535 LASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-11
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 29/182 (15%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
L+ S +PG AL+G SG+GK+T+ +++G + G I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 914 RISG---YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSE--TRKMFIEEVMELVELKPL 968
++ +Q DI TV ++L + W P+ D + I +V
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDV--------- 597
Query: 969 IQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
I S G G + LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 598 ITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN 657
Query: 1023 VR 1024
+R
Sbjct: 658 LR 659
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 6e-11
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
L +S G L ++G SG GKTTL+++++G T G+I ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 916 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
G QN+ P++ V +++ + LR ++ R+ +++ LV L+ +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-- 130
Query: 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
LS R+R+ IA L P ++ +DEP LDA
Sbjct: 131 ---WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 6e-11
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 18/209 (8%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-ETFA 913
+L+ LS G L AL+G SG GKTTL+ ++G +TG I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R QN P + V +++ + + P+ D R + + ++LV L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAH-- 133
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 1031
LP + LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1032 TVVCTIHQPGIDIFDAF---DELFLMKRG 1057
T++C H D DA D+ +MK G
Sbjct: 191 TILCVTH----DQDDALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 6e-11
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 38/216 (17%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGY-P-KKQETFARISGYCEQ 921
G + +G +GAGK+T + +L+G T G + ++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR----VNGKDPFRRREEYLRSIGLV-- 102
Query: 922 NDIHSPFVTVYESLLYSAW----------LRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
+ L W L+L E+ + ++ + E+++L+ ++
Sbjct: 103 -------MGQKLQLW---WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1030
V LS QR R +A L+ P ++F+DEPT GLD A A + ++ +
Sbjct: 153 -----PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ 207
Query: 1031 RTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066
TV+ T H DI D + L+ + GQ ++ G L
Sbjct: 208 ATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 6e-11
Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 97/259 (37%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
LKD++ + G + ++GP SGK++LL AL G+L+ K+SG V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 227 TAAYISQ---HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP---DPD 280
+ AY+SQ N T+RE + F G ++ R + IK +PD
Sbjct: 67 SIAYVSQEPWIQN----GTIRENILF-------GKPFD-----EERYEKV-IKACALEPD 109
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI--SGGERKRVTTGEMM 338
+++ TE +G+ +GI SGG+++R+
Sbjct: 110 LEILPDGDLTE------------------------IGE---KGINLSGGQKQRI------ 136
Query: 339 VGPALA---------LFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAV-----ISLLQ 383
+LA +D+ + +D+ I NC+ + +N+ T + + LL
Sbjct: 137 ---SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRILVTHQLQLLP 192
Query: 384 PAPETYDLFDDIILLSDGQ 402
A D I++L +G+
Sbjct: 193 HA-------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 7e-11
Identities = 65/252 (25%), Positives = 103/252 (40%), Gaps = 63/252 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--- 224
L +VS I+ G ++G SGK+TLL LAG + SG V +G D+ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP----DPD 280
R Y+ Q D + T+R+ + A + +L A AG+ P+
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA---PLADDERIL-RAAEL---AGVTDFVNKHPN 128
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
GL D +G E RG+SGG+R+ V ++
Sbjct: 129 --------------------------GL----DLQIG-ERGRGLSGGQRQAVALARALLN 157
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI-----SLLQPAPETYDLFDDI 395
L +DE ++ +D ++ ++ L+Q + T +I SLL DL D I
Sbjct: 158 DPPILLLDEPTSAMDMNSEERLKERLRQ--LLGDKTLIIITHRPSLL-------DLVDRI 208
Query: 396 ILLSDGQIVYQG 407
I++ G+IV G
Sbjct: 209 IVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 8e-11
Identities = 69/278 (24%), Positives = 119/278 (42%), Gaps = 66/278 (23%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
F+++ F Y PSR ILK +S I PG+ L+G GK+T++ L D +
Sbjct: 2 EFKNVSFRY----PSRPDV-PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT 56
Query: 206 LKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
SG + +G D+ + +SQ + + + T+ E + +
Sbjct: 57 ---SGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG------------ 100
Query: 263 LTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322
KPD + +A +AN I D+ ++ L DT+VG+ R
Sbjct: 101 -------------KPDATDEEVEEAAK----KAN-IHDF---IMSLPDGYDTLVGE---R 136
Query: 323 G--ISGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
G +SGG+++R+ ++ P + L +DE ++ LD+ + + L + T VI
Sbjct: 137 GSQLSGGQKQRIAIARALLRNPKI-LLLDEATSALDAESEKLVQEALDR-AMKGRTTIVI 194
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQG-PRELV 412
S ++ A D I +L +GQ+V QG EL+
Sbjct: 195 AHRLSTIRNA-------DLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 53/235 (22%), Positives = 85/235 (36%), Gaps = 46/235 (19%)
Query: 177 PGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYIS 232
+T + G +GK+TLL +AG K D V +P +R +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEG 292
Q + VRE LAF + + + EL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDEL-------------------------- 115
Query: 293 QEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEIST 352
L +LGL+ + + +SGGE++RV + L +DE +
Sbjct: 116 ----------LDLLGLD-----HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 353 GLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
LD + Q++ LKQ + N VI + E L D I+++ DG++ Y G
Sbjct: 161 ALDRALRLQLLPELKQ-IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 70/265 (26%), Positives = 105/265 (39%), Gaps = 44/265 (16%)
Query: 149 EDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV 208
E + + R IL D+S + PG ++GP +GKTTLL L G+ S
Sbjct: 29 EPLIELKNVSVRRNGK-KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--- 84
Query: 209 SGRVTYNGHDMG--EFVPE--RTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
SG VT G G E + E + +S H+ TVR+ + S +G E
Sbjct: 85 SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVL-SGFFASIGIYQED 143
Query: 263 LTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322
LT A A L++LG + AD G
Sbjct: 144 LTAE------------------DLAAAQW----------LLELLGAKHLADRPFGS---- 171
Query: 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL 382
+S GE++RV +V L +DE + GLD Q++N L++ A++ +
Sbjct: 172 -LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVT 230
Query: 383 QPAPETYDLFDDIILLSDGQIVYQG 407
A E F +LL +G++V QG
Sbjct: 231 HHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 9e-11
Identities = 69/271 (25%), Positives = 113/271 (41%), Gaps = 64/271 (23%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
F+++ F Y +L+D+S I G L+GP SGK+TL+ + D
Sbjct: 2 EFKNVTFRY------PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD 55
Query: 206 LKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
SGR+ +GHD+ ++ R +SQ D + TV E +A+
Sbjct: 56 ---SGRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGRP---------- 101
Query: 263 LTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322
R E E + A A E I + L DT++G+ R
Sbjct: 102 --GATREEVEEAAR---------AANAHE-----FIME-------LPEGYDTVIGE---R 135
Query: 323 GI--SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI- 379
G+ SGG+R+R+ ++ L +DE ++ LD+ + + L + + N T VI
Sbjct: 136 GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL-ERLMKNRTTFVIA 194
Query: 380 ---SLLQPAPETYDLFDDIILLSDGQIVYQG 407
S ++ A D I++L DG+IV +G
Sbjct: 195 HRLSTIENA-------DRIVVLEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT---GNITISGYPKKQET 911
L G+S G + AL+G +GAGKTTL+ + G R G I +IT
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT------GLPP 72
Query: 912 FARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKP 967
R Y + P +TV E+LL A+ R D E ++ +EEV EL LK
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYELFPRLKE 128
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 1028 DTGRTVVCTIHQ 1039
G + + Q
Sbjct: 184 KEGGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 68/298 (22%), Positives = 122/298 (40%), Gaps = 64/298 (21%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL------DSSLKVSGRVTYNGHDMG 220
L D+S I G T L+G SGK+T+ + G L +S + V G +T +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLTAKTVW 80
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ + E+ DN TV + +AF + V R E++ + + G+
Sbjct: 81 D-IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIKIVRDVLADVGM----- 133
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMMV 339
DY D +SGG+++RV G + V
Sbjct: 134 ------------------LDYI---------------DSEPANLSGGQKQRVAIAGILAV 160
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399
P + + +DE ++ LD + QI+ ++ + + VIS+ E ++ D +++L
Sbjct: 161 EPKI-IILDESTSMLDPAGKEQILKLIR-KLKKKNNLTVISITHDIDEA-NMADQVLVLD 217
Query: 400 DGQIVYQG-PRELV--LEFFESMGFKCP---------KRKGVADFLQEVTSRKDQKQY 445
DG+++ QG P E+ +E + +G P K KG++ QE+ + + QY
Sbjct: 218 DGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 11/162 (6%)
Query: 864 FRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISG---YPKKQETFA--RI 915
+ G + AL+G SG GKTT + ++ G +TG I + G Y + + A R
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR 86
Query: 916 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
G Q P ++V+++++ A L+L D + E + L ++ +
Sbjct: 87 VGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKT 144
Query: 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
P +GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 145 PA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 32/187 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTL------MDVLSGRKTGGYITGNITISG---YPK 907
LN +S F P +TAL+G SG+GK+TL M+ L+ T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 908 KQETF---ARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
+ +T I +Q + PF +++YE+++Y LRL D + +E+ ++
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGA 132
Query: 964 ----ELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
E+K L S +GL G Q++R+ IA L +P II +DEPTS LD +A
Sbjct: 133 SIWDEVKDRLHDSALGLSG------GQQQRVCIARVLATSPKIILLDEPTSALDPISAGK 186
Query: 1019 VMRTVRN 1025
+ T+
Sbjct: 187 IEETLLG 193
|
Length = 252 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI---TGNITISGYPKKQETFA 913
L+ +S + G + +G +GAGK+T M +++G Y+ +G++ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 914 --RISGYCEQNDIHSPF---VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
R GY + H+P + V E L + A + + + K +EE++ELV L+P
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPE 126
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 22/161 (13%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFA 913
L G+S G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----PHE 71
Query: 914 RIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R Y Q P +TV E+LL R I + E+ EL P+++
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPD--EIYELFPVLK 122
Query: 971 SLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010
++G G G LS Q+++L IA LV P ++ +DEPT G
Sbjct: 123 EMLGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-10
Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 32/220 (14%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ- 909
D +L+ L+ +PG ++G SG+GK+TL +L T + G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIA 524
Query: 910 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVME------ 961
R G V + E++L+S +R + E V+
Sbjct: 525 DPAWLRRQMG-----------VVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAG 571
Query: 962 ----LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
+ EL + VG G LS QR+R+ IA LV NP I+ DE TS LD + A
Sbjct: 572 AHDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEA 630
Query: 1018 IVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
++MR +R + GRTV+ H+ + A D + ++++G
Sbjct: 631 LIMRNMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
R T L +VS +K G + L+GP SGK+TLL A+AG L + SG + +G D+
Sbjct: 8 RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIA 64
Query: 221 EFVPE---RTAAYISQ 233
+ E R Y+ Q
Sbjct: 65 KLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 41/194 (21%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
L+ VS + PG L+GP +GK+TLL L G +D + G + NG + + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
A++ QH + T+ E + LAR +
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIR-----------------LARPD-------------- 422
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
A E +EA V L DT +G+ G+SGG+ +R+ + A
Sbjct: 423 --ASDAEIREALERAGLDEFVAALPQGLDTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 345 LFMDEISTGLDSST 358
L +DE + LD+ T
Sbjct: 480 LLLDEPTAHLDAET 493
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+ +S + G +L GP SGKTTLL +AG L +G + +G D+ +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVA 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQG 255
Y+ + +TV E L F A G
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG 102
|
Length = 207 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 18/213 (8%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETF 912
+L G+S + G + A++G SG+GK+TL+ +L G +G + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 913 ARISGYCEQNDIHSPFVTVYESLL--YSAW--LRLPPEVDSETRKMFIEEVMELVELKPL 968
+ + + F+ + LL ++A + +P + ++ K E E++E L
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRN 1025
+ P S LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 EHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 1026 TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058
++T VV H + D + MK G
Sbjct: 190 ELNTSFLVV--THDLE--LAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-ITGNITISG-----YPKKQ 909
LL ++ G + LMG SG GK+TL+ + G G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
R G Q+ + P ++V ++LL++ LP + R+ +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQD---P--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 51/247 (20%), Positives = 95/247 (38%), Gaps = 46/247 (18%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
HL + D++ + G + +LGP +GK+TLL +AG SG + NG D
Sbjct: 12 GHLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTAS 66
Query: 223 VP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
P ER + + Q +N +TV + + G+ P
Sbjct: 67 PPAERPVSMLFQENNLFAHLTVAQNIGL------------------------GLSPG--- 99
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
+K A + ++ +GL + +SGG+R+RV +V
Sbjct: 100 ---LKLNAEQREKVEAA----AAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVRE 147
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE + LD + +++ + Q + ++ + + + D ++ L +G
Sbjct: 148 QPILLLDEPFSALDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206
Query: 402 QIVYQGP 408
+I QG
Sbjct: 207 RIAAQGS 213
|
Length = 231 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
+N +S G + L+G +GAGKTT ++ G R G I + I+ P + A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 914 RIS-GYCEQNDIHSPF--VTVYESLLYSAWLRLPPEVDSET--RKMFIEEVMELVELKPL 968
R+ GY Q S F +TV ++++ +R E D + RK ++ ++E + L
Sbjct: 78 RLGIGYLPQE--ASIFRKLTVEDNIMAVLEIR---EKDLKKAERKEELDALLEEFHITHL 132
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
S S LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 133 RDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 1029 TGRTVVCTIH 1038
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-E 910
V L+G+S + G L+G SG GKTTL+ +++G +T +G I + G
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLP 68
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R QN P +TV+E++ + LRL ++ K + E ++LV+L+
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGYAN 125
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 126 RKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 63/263 (23%), Positives = 112/263 (42%), Gaps = 66/263 (25%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L DVS I G +T ++GP +GK+T LL++ +L K SG +T +G ++ +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 226 RTAAYIS--QHDNHIG-EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A +S + +NHI +TVR+ + F R+
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGF--------GRFP--------------------- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
Y + T+ E I + ++ L LE + D + +SGG+R+R +
Sbjct: 103 -YSQGRLTK--EDRRIINEAIEYLHLE-----DLSDRYLDELSGGQRQRA-----FIAMV 149
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL------ 391
LA + +DE LD + QI+ L++ T V+ L +D+
Sbjct: 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCY 202
Query: 392 FDDIILLSDGQIVYQGPRELVLE 414
D I+ L +G++V QG + +++
Sbjct: 203 SDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 31/201 (15%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY------P 906
K+ L +S + G + ++G SGAGK+TL+ ++G + +G++ + G
Sbjct: 17 KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSG 74
Query: 907 KKQETFARISGYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
K+ R G Q N + S TV+E++ P E+ + E V+EL+E
Sbjct: 75 KELRKARRRIGMIFQHFNLLSSR--TVFENVAL------PLEIAGVPKAEIEERVLELLE 126
Query: 965 LKPLIQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
L VGL + LS Q++R+ IA L NP ++ DE TS LD +
Sbjct: 127 L-------VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSI 179
Query: 1020 MRTVRNT-VDTGRTVVCTIHQ 1039
+ +R+ + G T+V H+
Sbjct: 180 LALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 3e-10
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 13/206 (6%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
+L GL+ F +T L+G +G GK+TL LSG R G + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R Q+ F T +S + + L TR+ ++E + LV+ +
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR--VDEALTLVDAQHFRHQ- 132
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 133 ----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH 188
Query: 1033 VVCTIHQPGID-IFDAFDELFLMKRG 1057
V+ + H ID I++ D ++++++G
Sbjct: 189 VIISSHD--IDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-10
Identities = 67/237 (28%), Positives = 101/237 (42%), Gaps = 54/237 (22%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGY-- 905
+LNG+S G A++G SGAGK+T++ DV SG ITI G
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS---------ITIDGQDI 327
Query: 906 -PKKQETFARISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEV 959
Q++ R G Q ND T+ ++ Y P+ +E +
Sbjct: 328 RDVTQQSLRRAIGIVPQDTVLFND------TIAYNIKYGR-----PDATAEE----VGAA 372
Query: 960 MELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
E ++ IQSL VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 373 AEAAQIHDFIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALD 431
Query: 1013 ARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRH 1069
+ +R V GRT + H+ I DA DE+ ++ G + G H
Sbjct: 432 THTEQAIQAALRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG----RIVERGTH 481
|
Length = 497 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 64/252 (25%), Positives = 98/252 (38%), Gaps = 56/252 (22%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
++ VS ++ G + LLGP +GKTT + L L + SGR T GHD+ V E
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDV---VREPR 69
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R + Q + E+T E L AR GV E R +E
Sbjct: 70 EVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRERIDEL--------- 115
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
L +GL D +++ SGG R+R+ +V
Sbjct: 116 --------------------LDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRP 150
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL--QPAPETYDLFDDIILLSD 400
LF+DE + GLD T + +++ + + LL E L D + ++
Sbjct: 151 EVLFLDEPTIGLDPQTRAHVWEYIEK---LKEEFGMTILLTTHYMEEAEQLCDRVAIIDH 207
Query: 401 GQIVYQG-PREL 411
G+I+ +G P EL
Sbjct: 208 GRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-10
Identities = 73/287 (25%), Positives = 105/287 (36%), Gaps = 88/287 (30%)
Query: 156 GILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215
G+ + + + DVS ++ G L+G SGK+TL LAG L S SG + ++
Sbjct: 295 GLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFD 351
Query: 216 GHDM----GEFVP-ERTAAYISQH-----DNHIGEMTVRETLAFSARCQGVGSRYELLTE 265
G D+ GE R + Q + MTV + LA R G GS E
Sbjct: 352 GQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHGGGSGAE---- 404
Query: 266 LARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325
RR + ++ V D +S
Sbjct: 405 --RRAR---------VAELLE----------------------LVGLPPEFLDRYPHELS 431
Query: 326 GGERKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
GG+R+RV + ALA L +DE + LD S Q++N LK
Sbjct: 432 GGQRQRVA-----IARALALEPKLLILDEPVSALDVSVQAQVLNLLKD------------ 474
Query: 381 LLQPAPETYDLF------------DDIILLSDGQIVYQGPRELVLEF 415
L + TY LF D + ++ DG+IV +GP E V E
Sbjct: 475 LQEELGLTY-LFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-10
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 872 LMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQETFARISGYCEQNDIHSP 927
L+G SG GKTT + +++G T G YI G PK R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987
+TVY+++ + LR P+ + + R + EV EL++++ L+ LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQ 137
Query: 988 RLTIAVELVANPSIIFMDEPTSGLDAR 1014
R+ + +V P + MDEP S LDA+
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 63/228 (27%), Positives = 92/228 (40%), Gaps = 57/228 (25%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVL-------SGRKTGGYITGNITISGYPKK 908
+N L+ G L+G SG+GKTT M ++ SG I I G +
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE---------IFIDGEDIR 66
Query: 909 QET---FARISGYCEQNDIHSPFVTVYE------SLLYSAWLRLPPEVDSETRKMFIEEV 959
++ R GY Q P +TV E LL W + E + +E+
Sbjct: 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADEL 117
Query: 960 MELVELKPLIQSLVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
+ LV L P P LS Q++R+ +A L A+P ++ MDEP LD
Sbjct: 118 LALVGLDP--AEFADRYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP----- 168
Query: 1019 VMRT------VRNTVDTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1057
+ R R + G+T+V H DI +AF D + +MK G
Sbjct: 169 ITRDQLQEEFKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 5e-10
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 19/173 (10%)
Query: 847 QGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906
QG E +L +L G+ + G AL+G SG+GK+TL+ +L+G G +G +++ G P
Sbjct: 18 QG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQP 73
Query: 907 -------KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEV 959
+ + A+ G+ Q+ + P + E++ A LR E ++R
Sbjct: 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----NGA 127
Query: 960 MELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
L+E L + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 128 KALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 8e-10
Identities = 58/271 (21%), Positives = 107/271 (39%), Gaps = 53/271 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
T+L D+S I+ G + L+G GKTTLL A+AG + ++ ++GR+ D+ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R A + Q+ + V + +AF R Q + ++A R +A
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK-----ADIAERVADA----------- 121
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
LK++GL + +SGG ++R+ +
Sbjct: 122 ------------------LKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQ-HVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LD++ + + H + T ++ + + L D ++ DG++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELT-ILCVTHDQDDALTLADKAGIMKDGRL 217
Query: 404 VYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
G P+ L + P A+FL
Sbjct: 218 AAHGEPQAL---------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 8e-10
Identities = 80/325 (24%), Positives = 123/325 (37%), Gaps = 71/325 (21%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEFV 223
++ ++ I G LLGP GKTT+L +AG D SGR+ +G D+
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-----SGRIMLDGQDITHVP 82
Query: 224 PE-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
E R + Q MTV E +AF R Q + E+ R EA
Sbjct: 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPRVMEA--------- 128
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
L+++ LE A +SGG+++RV +V
Sbjct: 129 --------------------LRMVQLEEFA-----QRKPHQLSGGQQQRVAIARAVVNKP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD Q+ N LK + G + + E + D I+++ DG+
Sbjct: 164 KVLLLDESLSALDYKLRKQMQNELKA-LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222
Query: 403 IVYQG-PRELVLEFFESMGFKCPKRKGVADFLQE-------VTSRKDQKQYWTHKEKPYR 454
I G PRE+ ++ PK VA F+ E V R D+++ + E
Sbjct: 223 IEQDGTPREI---------YEEPKNLFVARFIGEINIFDATVIERLDEQRVRANVEGREC 273
Query: 455 FVTVEEFAEAFQSFHVGQKISDELR 479
+ V + GQK+ LR
Sbjct: 274 NIYVN------FAVEPGQKLHVLLR 292
|
Length = 375 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 9e-10
Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 49/246 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L+DVS +KPG ++GP +GK+TLL A+ G L + SG + G + +
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKER-- 67
Query: 226 RTAAYISQHDNHIGEM--TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ Y+ Q + + +VR+ + G+ L L++ +
Sbjct: 68 KRIGYVPQRRSIDRDFPISVRDVVLM-----GLYGHKGLFRRLSKAD------------- 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
KA E L+ +GL + + D I +SGG+++RV +V
Sbjct: 110 --KAKVDEA----------LERVGL-----SELADRQIGELSGGQQQRVLLARALVQDPD 152
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL--LQPAPETYDLFDDIILLSDG 401
L +DE G+D T I L++ + T ++ L + FD ++LL +
Sbjct: 153 LLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLLL-NR 207
Query: 402 QIVYQG 407
+V G
Sbjct: 208 TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 9e-10
Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 55/264 (20%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
LT + DVS ++PG + L+GP +GKTTL + G S SG V + G D+ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 225 ERTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
R A I+ Q +TV E +A A + G L AR+E
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARL-GLSGLLGRPRARKE---------- 122
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE---- 336
+ +E L+ +GL AD G+ +S G+++R+ E
Sbjct: 123 ----EREARERAREL-------LEFVGLGELADRPAGN-----LSYGQQRRL---EIARA 163
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV------ISLLQPAPETYD 390
+ P L L +DE + GL+ T ++ +++ + G + + L+
Sbjct: 164 LATQPKL-LLLDEPAAGLNPEETEELAELIRE-LRDRGGVTILLIEHDMKLV------MG 215
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
L D I++L+ G+++ +G E V
Sbjct: 216 LADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 73/292 (25%), Positives = 111/292 (38%), Gaps = 73/292 (25%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
+T L DVS I G + ++G +GK+TLL + L+ SG V +G D+
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LERP--TSGSVFVDGQDLT 71
Query: 221 EFVPE------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
+ I QH N + TV E +AF GV E+ +R E
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPK-----AEIKQRVAEL- 125
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
L+++GL AD +SGG+++RV
Sbjct: 126 ----------------------------LELVGLSDKADR-----YPAQLSGGQKQRVA- 151
Query: 335 GEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINS--GTAVISLLQPAPE 387
+ ALA L DE ++ LD TT I+ LK IN G ++ L+ E
Sbjct: 152 ----IARALANNPKILLCDEATSALDPETTQSILELLKD---INRELGLTIV-LITHEME 203
Query: 388 -TYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTS 438
+ D + +L G++V +G V E F + PK +F+ E
Sbjct: 204 VVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLE 247
|
Length = 339 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 1e-09
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 53/184 (28%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YP 906
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 907 KKQETFA---RISGYCEQ--NDIHSPFV-TVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
K + R+ G Q N PF ++Y+++ Y LRL D E +
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE--------LD 123
Query: 961 ELVELKPLIQSL--VGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008
E+VE SL L + GLS Q++RL IA L P ++ MDEPT
Sbjct: 124 EIVE-----SSLKKAALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVKPEVLLMDEPT 177
Query: 1009 SGLD 1012
S LD
Sbjct: 178 SALD 181
|
Length = 253 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-09
Identities = 57/256 (22%), Positives = 105/256 (41%), Gaps = 56/256 (21%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
L +S +I+PG L+G SGK+TL+ + + SG++ +GHD+ ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASL 404
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
R A +SQ D + T+ +A+ Q + E
Sbjct: 405 RRQVALVSQ-DVVLFNDTIANNIAYGRTEQADRAEIE----------------------- 440
Query: 285 MKAIATEGQEANVITDYYLK--VLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ Y + V L + DT +G+ + +SGG+R+R+ ++ A
Sbjct: 441 -----------RALAAAYAQDFVDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDA 488
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----SLLQPAPETYDLFDDIILL 398
L +DE ++ LD+ + + L + + T VI S ++ A D I+++
Sbjct: 489 PILILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKA-------DRIVVM 540
Query: 399 SDGQIVYQGPRELVLE 414
DG+IV +G +L
Sbjct: 541 DDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 31/222 (13%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
++ ++ G L+G SG+GKTT + +++ T G I IS
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD---PVEL 73
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPE---VDSETRKMFIEEVMELVELKPLI 969
R GY Q P +TV E++ P+ D E K +E+++LV L P
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLDP-S 126
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNT 1026
+ P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 127 EYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE 184
Query: 1027 VDTGRTVVCTIHQPGIDIFDAF---DELFLMKRGGQEIYVGP 1065
G+T+V H DI +A D + +M G Y P
Sbjct: 185 --LGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-09
Identities = 56/211 (26%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYPKKQ--- 909
L L+ G AL+G SGAGKT+L++ L G ++ G++ I+G ++
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE--VMELVELKP 967
E++ + + QN P T+ +++L P+ E + +E V E + L P
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDEQLQQALENAWVSEFLPLLP 472
Query: 968 L-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
+ + +G +GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ + N
Sbjct: 473 QGLDTPIG-DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NA 530
Query: 1027 VDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+T + HQ ++ +D++++M+ G
Sbjct: 531 ASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 48/198 (24%), Positives = 72/198 (36%), Gaps = 49/198 (24%)
Query: 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219
S KK IL D+S + G + L G +GKTTL LAG + S SG + NG +
Sbjct: 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPI 64
Query: 220 GEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
++ Y+ Q D + +VRE L +
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLK-------------------------- 98
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG-EM 337
E N + LK L L + +SGG+++R+ +
Sbjct: 99 ------------ELDAGNEQAETVLKDLDLYALKE-----RHPLSLSGGQKQRLAIAAAL 141
Query: 338 MVGPALALFMDEISTGLD 355
+ G L L DE ++GLD
Sbjct: 142 LSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 62/248 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L ++ I G L+GP +GK+TLL + + L SG + NG D+ + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRA 72
Query: 228 AAYISQH------DNH-IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
Y+ + D + + V E +AF+ GV R E+ +R A
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L+++GL + +SGGE++RV +V
Sbjct: 121 ----------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVN 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVISLLQPAPETYDLFDD----I 395
L DE + LD TT++I+N LK+ IN +GT V+ A +L D +
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKK---INKAGTTVVV----ATHAKELVDTTRHRV 206
Query: 396 ILLSDGQI 403
I L G++
Sbjct: 207 IALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 49/254 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
LK+ + + G +LG SGK+TLL LAG D G +T NG ++
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEI------ 402
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
+ E +RET++ + + S L R+N PD D +
Sbjct: 403 ----------ASLDEQALRETISVLTQRVHLFS-----GTL--RDNLRLANPDAS-DEEL 444
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALAL 345
A + ++ +T +G E R +SGGER+R+ ++ A
Sbjct: 445 WAALQQVGLEKLLES-------APDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLW 496
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-----FDDIILLSD 400
+DE + GLD T Q++ L +H G ++ + T+ L D II+L +
Sbjct: 497 LLDEPTEGLDPITERQVLALLFEHA---EGKTLLMV------THRLRGLERMDRIIVLDN 547
Query: 401 GQIVYQGPRELVLE 414
G+I+ +G +L
Sbjct: 548 GKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 49/241 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L+DVS I G + ++LGP GKTTLL +AG + S G + NG + ER
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAER 76
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ Q++ + + V + +AF + +G+ RRE
Sbjct: 77 --GVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRRE---------------- 111
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-MMVGPALAL 345
I L ++GLE + I +SGG R+RV + V P L L
Sbjct: 112 -----------IAHQMLALVGLE---GA--EHKYIWQLSGGMRQRVGIARALAVEPQL-L 154
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQI 403
+DE LD+ T Q+ L + +G V+ + E L +++LS G++
Sbjct: 155 LLDEPFGALDALTREQMQELLLD-LWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213
Query: 404 V 404
V
Sbjct: 214 V 214
|
Length = 259 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 24/207 (11%)
Query: 845 KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 904
K G E +L +L G+ + G A++G SG+GK+TL+ VL+G +G + + G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 905 YP---KKQETFARIS----GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIE 957
P ++ A + G+ Q+ P +T E++ LP E+ E+
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRA 125
Query: 958 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----A 1013
L+E L + L P LS +++R+ +A P ++F DEPT LD
Sbjct: 126 GAKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 1014 RAAAIVMRTVRNTVDTGRTVVCTIHQP 1040
+ A ++ R + G T+V H P
Sbjct: 184 KIADLLFALNR---ERGTTLVLVTHDP 207
|
Length = 228 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 34/159 (21%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI----------TGNITISGYPKKQETFA 913
G+ TAL G SG+GKT+L+++++G R G I I + P ++
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFL---PPEKR--- 76
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
RI GY Q+ P TV +L Y W ++ + ++++ L+ ++ L L
Sbjct: 77 RI-GYVFQDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LD 123
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
PG LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 124 RYPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-09
Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQET 911
+V + +S + + G + AL+G +GAGK+TLM +L G + G I + G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG----EIRVDGKE----- 67
Query: 912 FARISGYCEQND--------IHSPFV-----TVYESLLYSAWLRLPPEVD-SETRKMFIE 957
RI D +H F+ TV E+++ +D + R I+
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 958 EVMEL----VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
E+ E V+ V+ LS +++R+ I L ++ +DEPT+ L
Sbjct: 123 ELSERYGLPVDPDAK---------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Query: 1014 RAAAIVMRTVRNTVDTGRTVV 1034
+ A + +R G+T++
Sbjct: 174 QEADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 63/257 (24%), Positives = 91/257 (35%), Gaps = 56/257 (21%)
Query: 183 LLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEM 241
LLGP GKTTLL LAG SG + +G D+ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TV E +AF + + V E+ R EA
Sbjct: 58 TVEENVAFGLKMRKVPR-----AEIKPRVLEA---------------------------- 84
Query: 302 YLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTF 360
L + D +SGG+++RV +V P + L +DE + LD
Sbjct: 85 ------LRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRD 137
Query: 361 QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFESM 419
Q+ LK + G + + E + D I ++ G+I G P E+ E
Sbjct: 138 QMQLELKT-IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE----- 191
Query: 420 GFKCPKRKGVADFLQEV 436
P VA F+ E+
Sbjct: 192 ----PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 872 LMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 928
L+G SG GKTTL+ +L+G + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988
+TV E++ + +R +V K + E + LV+L+ LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 989 LTIAVELVANPSIIFMDEPTSGLDAR 1014
+ +A LV P I+ +DEP S LD +
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 25/160 (15%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG--YPKKQETFARISG----Y 918
PG + AL+G +GAGK+TLM VLSG G ITI+ Y K A G Y
Sbjct: 29 YPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAAQLGIGIIY 86
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLP-------PEVDSETRKMFIEEVMELVELKPLIQS 971
E + I +TV E+L R +D ++ ++ V LK +
Sbjct: 87 QELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE 141
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
V LS ++ L IA L+ + +I MDEPTS L
Sbjct: 142 KVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 42/116 (36%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF- 222
+L D+S I G+M LLGP SGKTTLL +AG L+ + SG + ++G D+
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLH 70
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE--NEAGIK 276
+R ++ QH MTV + +AF LT L RRE N A IK
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNAAAIK 114
|
Length = 353 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-09
Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 32/222 (14%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTT----LMDVLS--GRKTGGYIT-GNITISGYPK 907
+ +S PG + ++G SG+GK+T LM +L GR T G + + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 908 KQET--FARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
++ + Q+ + S P +T+ + + + L +R + +EL+
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH-----GKGSRAEARKRAVELL 137
Query: 964 ELKPLIQSLVGLPGVSG-------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016
E VGLP LS R+R+ IA+ L P ++ DEPT+ LD
Sbjct: 138 EQ-------VGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190
Query: 1017 AIVMRTVRN-TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
A ++ +++ + G V+ H G+ + + D + +M +G
Sbjct: 191 AQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-09
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK-- 908
D ++L+ +S PG A++G SG+GK+TL+ +L G +T +G++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 909 -QETFARISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
+ R G QN + S +++E++ A L L +E E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGAPLTL-------------DEAWEAARMA 565
Query: 967 PLIQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 1018 IVM 1020
IV
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 18/210 (8%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP----KKQET 911
+L+G+ + R G L L+G +GAGKTTL+ ++G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 912 FARISGYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
R++ + + F V E R +++ +E ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTG----V 129
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
P V+ LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 130 AQFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 1030 GRTVVCTIHQPGIDIFDAF-DELFLMKRGG 1058
G+T V IH +D+ + DEL L+ G
Sbjct: 189 GKTAVAAIHD--LDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 18/191 (9%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
D L +GLS G + G +G+GKTTL+ +L+G G + N ++
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQR 68
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
++ AR Y ++V E+L + + E +EE + V L
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENL---RFWH--ADHSDEQ----VEEALARVGLNGFE 119
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 120 DRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 1030 GRTVVCTIHQP 1040
G VV T HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 4e-09
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+L D+S I+ G + +LGP +GK+TLL LAG L S SG + +G D+ P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 226 ---RTAAYISQ 233
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-09
Identities = 62/221 (28%), Positives = 88/221 (39%), Gaps = 54/221 (24%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L DVS I+ G L GP +GKTTLL L G L S G+V G D+ + R
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDV-NRLRGR 72
Query: 227 TAAYISQH------DNHI-GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ + D + + TV E +A +G R E+ RR A
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------ 121
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
L+ +GLE AD +SGGE++RV +V
Sbjct: 122 -----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
P L L DE + LD + +I++ LK+ ++ GT VI
Sbjct: 154 NSPPL-LLADEPTGNLDPDLSERILDLLKR-LNK-RGTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 4e-09
Identities = 46/215 (21%), Positives = 94/215 (43%), Gaps = 44/215 (20%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
L ++ G L A++G G+GK++L+ L G K G ++ +I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 914 RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
Y Q P++ T+ E++L+ D E E+V++ L+P ++
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILFGK------PFDEE----RYEKVIKACALEPDLE 111
Query: 971 SL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRT 1022
L +G G++ LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 1023 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ + +T + HQ + + D++ ++ G
Sbjct: 171 ILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 4e-09
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 16/200 (8%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI-TGNITISGYPKKQET--FARISGYC 919
+ G TAL+G +G+GK+TL+ L+G + T G + G+I +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 920 EQNDIHSPFVTVYESLLYSAWLRLPPE--VDSETRKMFIEEVMELVELKPLIQSLVGLPG 977
Q P ++E + P + E + E +E+V L
Sbjct: 90 FQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE- 144
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1037
LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 145 ---LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 1038 HQPGIDIFDAFDELFLMKRG 1057
H D+ D D ++L+++G
Sbjct: 202 HLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 4e-09
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 47/216 (21%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
+L G++ + G + ALMG +G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 916 SGYCEQNDIHSPFVTVYESL---LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
DI + E ++ A+ PPE+ F+ V E
Sbjct: 64 ------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE----------- 103
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
G S ++KR I L+ P + +DEP SGLD A +V + + G++
Sbjct: 104 -------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 1033 VVCTIHQPGIDIFDAFDELFLM------KRGGQEIY 1062
V+ H + + D + ++ K G +E+
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 55/219 (25%), Positives = 82/219 (37%), Gaps = 55/219 (25%)
Query: 158 LPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH 217
+ + L+ILK V ++K G ++GP SGK+TLL LAG D S SG V G
Sbjct: 16 VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQ 72
Query: 218 DMGEFVPERTAAYISQHDNH-------IGEMTVRETLAFSARCQGVGSRYELLTELARRE 270
+ + + AA ++H I +T E +A +G S
Sbjct: 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA----------- 121
Query: 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI---RGISGG 327
+A A L+ +GL G + +SGG
Sbjct: 122 -------------DSRAGAKA----------LLEAVGL--------GKRLTHYPAQLSGG 150
Query: 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
E++RV G LF DE + LD +T +I + L
Sbjct: 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 5e-09
Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 40/212 (18%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISG---YPKKQ 909
++G+S + G + ++G SG+GK+ L + G K I G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 910 ETFARISG----YCEQNDIHS--PFVTV----YESLLYSAWLRLPPEVDSETRKMFIEEV 959
+ +I G Q+ + S P +T+ E L ++K E
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--------LSKKEAKERA 131
Query: 960 MELVELKPLIQSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+EL+EL VG+P LS R+R+ IA+ L NP ++ DEPT+ L
Sbjct: 132 IELLEL-------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 1012 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPGI 1042
D A ++ ++ + G ++ H G+
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGV 216
|
Length = 316 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 7e-09
Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 49/252 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV--SGRVTYNGHDMGEFVP 224
IL ++S IKPG + ++G SGK+TL KL V +GRV +GHD+ P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 225 E---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
R + Q +N + ++R+ +A + DP +
Sbjct: 72 AWLRRQVGVVLQ-ENVLFNRSIRDNIALA---------------------------DPGM 103
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
+ EA + + + L DT+VG++ G+SGG+R+R+ ++
Sbjct: 104 SME------RVIEAAKLAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHN 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L DE ++ LD + I+ + I +G VI ++ T D II++ G
Sbjct: 157 PRILIFDEATSALDYESEHAIMRNMHD---ICAGRTVI-IIAHRLSTVKNADRIIVMEKG 212
Query: 402 QIVYQGPRELVL 413
+IV QG + +L
Sbjct: 213 RIVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 7e-09
Identities = 54/251 (21%), Positives = 101/251 (40%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL D+S + G++T L+GP GK+TLL A L SG V +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSR 72
Query: 226 RTAAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ A ++ QH +TVRE +A+ G P
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAY------------------------GRSP----- 103
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
++ E N + ++ + AD + D +SGG+R+R ++
Sbjct: 104 -WLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD + +++ +++ G V+++L + D +++L++G
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRELN--TQGKTVVTVLHDLNQASRYCDHLVVLANGH 215
Query: 403 IVYQGPRELVL 413
++ QG E V+
Sbjct: 216 VMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 20/197 (10%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ 909
+L G+ + G + ++G SG+GK+TL+ ++ G I + ++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ G Q P +TV E++ + P +V ++ E +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLA-----PIKVKGMSKAEAEERALELLEK---- 122
Query: 970 QSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+ ++
Sbjct: 123 ---VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179
Query: 1025 NTVDTGRTVVCTIHQPG 1041
+ + G T+V H+ G
Sbjct: 180 DLAEEGMTMVVVTHEMG 196
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 849 VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGGYIT---GNITIS 903
+ LNGLS G ++G +GAGK+TL++ ++G T G I ++T
Sbjct: 14 GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73
Query: 904 GYPKKQETFARI-----SGYCEQNDIHSPFVTVYESLLYSAWLR-----LPPEVDSETRK 953
K+ AR+ +G P +T+ E+L A R L ++ R
Sbjct: 74 SVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRS 125
Query: 954 MFIEEVMELVE-LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
F E + L L+ + +GL LS QR+ L++ + + P I+ +DE T+ LD
Sbjct: 126 SFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
Query: 1013 ARAAAIVM 1020
+ A VM
Sbjct: 181 PKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 8e-09
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISG---YPKKQE 910
L G+ F +TAL+G SG GK+T + L+ G ITGN+++ G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 911 T--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
+ G Q PF ++YE+++Y LRL D +E ++ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
++ + +S LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 138 VKDHLHESALS-LSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-08
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 31/182 (17%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR 914
LL +S PG L+G +GAGK+TL+ +L+G +G +T R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LR 67
Query: 915 ISGYCEQNDIHSPFVTVYESLL--YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
+ GY Q P TV + ++ + L E++ + + L EL+ L++ L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 973 ---------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1014 RA 1015
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 46/186 (24%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YP 906
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 907 KKQETFA---RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 962
KK + R+ G Q +PF +++Y+++ Y P + K ++E++E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG------PRLHGIKDKKELDEIVE- 122
Query: 963 VELKPLIQSL--VGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+SL L GLS Q++RL IA L P ++ +DEPTS L
Sbjct: 123 -------ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 1012 DARAAA 1017
D A
Sbjct: 176 DPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L ++ G L ++G SG GKTTL+++++G Y G+IT+ G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 917 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976
G QN+ P+ V +++ + L V+ R ++++ V L+ + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
LS QR+R+ IA L ANP ++ +DEP LDA
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 31/201 (15%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
D LVL +S PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP--- 77
Query: 910 ETFARISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETRKMFIEEVMELV----- 963
IS Y E +HS V E +L++ L+ ++ E V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 964 -----ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
EL + VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1019 VMRTVRNTVDTGRTVVCTIHQ 1039
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 46/217 (21%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE 910
EDK +L G++ + G + A+MG +G+GK+TL ++G + +G I G Q+
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 911 TFARISGYCEQNDIHSPFVTVYESL---LYSAWLRLPPEVDSETRKMFI----------- 956
+ E L+ A+ + P E+ + F+
Sbjct: 66 LLE---------------LEPDERARAGLFLAF-QYPEEIPGVSNLEFLRSALNARRSAR 109
Query: 957 -EEVMELVELKPLIQSLVGLPGVS----------GLSTEQRKRLTIAVELVANPSIIFMD 1005
EE ++L++ L+++ + L G+ G S ++KR I + P + +D
Sbjct: 110 GEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILD 169
Query: 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
E SGLD A IV + + R+ + H +
Sbjct: 170 EIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-08
Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 45/251 (17%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD---M 219
+LKD+S I+PG ++GP SGK+TL+ L D + SG + +G D +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDI 396
Query: 220 GEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ +SQ D + T+RE +A G
Sbjct: 397 SLDSLRKRIGIVSQ-DPLLFSGTIRENIAL------------------------GRPDAT 431
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
D ++ E + L DT+VG E +SGG+R+R+ ++
Sbjct: 432 DEEIEEALKLANAHEF---------IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALL 481
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399
L +DE ++ LD+ T I + LK+ + T +I+ T D II+L
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKK-LLKGRTTLIIAHR---LSTIKNADRIIVLD 537
Query: 400 DGQIVYQGPRE 410
+G+IV +G E
Sbjct: 538 NGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 54/246 (21%), Positives = 95/246 (38%), Gaps = 53/246 (21%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T L D+S ++ G + LLGP +GKTT + + G + SG V ++G +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLD-IAAR 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
Y+ + +M V + L + A+ +G+ ARR
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR--------------- 108
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMMVGPALA 344
D +L+ L L A ++ + +S G +++V ++ P L
Sbjct: 109 -------------IDEWLERLELSEYA-----NKRVEELSKGNQQKVQFIAAVIHDPEL- 149
Query: 345 LFMDEISTGLDSSTT---FQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE +GLD ++ L + +G VI +L D ++LL+ G
Sbjct: 150 LILDEPFSGLDPVNVELLKDVIRELAR-----AGKTVILSTHQMELVEELCDRVLLLNKG 204
Query: 402 QIVYQG 407
+ V G
Sbjct: 205 RAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 68/265 (25%), Positives = 109/265 (41%), Gaps = 55/265 (20%)
Query: 157 ILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
I+P K L+ +S ++ G ++GP SGK+TL + G SG V +G
Sbjct: 324 IVPPGGKK-PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG---IWPPTSGSVRLDG 379
Query: 217 HDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273
D+ ++ E + Y+ Q D + TV E +A R+ EN
Sbjct: 380 ADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENIA----------RF--------GEN-- 418
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333
DP+ K I EA + + +L L DT++G +SGG+R+R+
Sbjct: 419 ---ADPE-----KII-----EAAKLAGVHELILRLPDGYDTVIGPGGA-TLSGGQRQRIA 464
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI-----SLLQPAPET 388
+ G + +DE ++ LD + N +K + T V+ SLL
Sbjct: 465 LARALYGDPKLVVLDEPNSNLDEEGEQALANAIK-ALKARGITVVVITHRPSLLGCV--- 520
Query: 389 YDLFDDIILLSDGQIVYQGPRELVL 413
D I++L DG+I G R+ VL
Sbjct: 521 ----DKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 58/240 (24%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
L +VS + GR+ LGP +GK+T + + G L SG V G D+ + E
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY- 284
R Y+ +H+ +M VRE L F A +Y
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIA------------------------------GIYG 104
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
MK + + +I E+ + I +S G R+RV + ++
Sbjct: 105 MKGQLLKQRVEEMI----------ELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE +TGLD + +I N +K I +I E + D +I+++ G+IV
Sbjct: 155 LILDEPTTGLDPNQLVEIRNVIKN---IGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 65/270 (24%), Positives = 100/270 (37%), Gaps = 54/270 (20%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
L VS IK G LLGP GKTTLL +AG + SG + +G D+ P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R + Q+ +TV E +AF R + + E+ R EA
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
+ + EG + +SGG+++RV +V
Sbjct: 115 LDLVQLEGYA-----------------------NRKPSQLSGGQQQRVAIARALVNEPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE LD + LK+ + G + + E + D I +++ G+I
Sbjct: 152 LLLDEPLGALDLKLRKDMQLELKR-LQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210
Query: 405 YQG-PRELVLEFFESMGFKCPKRKGVADFL 433
G P E+ E P + VADF+
Sbjct: 211 QIGTPEEIYEE---------PANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 41/218 (18%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR---KTGGYIT-GNITISGYPKKQ--E 910
L +S + +PG ++G +G+GK++L+ L R + G I + IS
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLHDLRS 78
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLR--LPPE---VDSETRKMFIEEVMELVEL 965
+ I Q + +L+S +R L P D E + + +E V L
Sbjct: 79 RISIIP----Q-----------DPVLFSGTIRSNLDPFGEYSDEE-----LWQALERVGL 118
Query: 966 KPLIQSLV-GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
K ++SL GL V LS QR+ L +A L+ I+ +DE T+ +D A++
Sbjct: 119 KEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178
Query: 1020 MRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+T+R TV+ H+ +D D + ++ +G
Sbjct: 179 QKTIR-EAFKDCTVLTIAHR--LDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L G+S + G + ++G SG+GK+TL+ L+G G IT + G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
G Q P +TV E++ + P +V ++ E+ +EL+E VG
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVTLA-----PVKVKKLSKAEAREKALELLEK-------VG 125
Query: 975 LPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
L + LS Q++R+ IA L +P ++ DEPTS LD V+ +++ +
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 1030 GRTVVCTIHQ 1039
G T++ H+
Sbjct: 186 GMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)
Query: 842 QEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNIT 901
M+L V E L LSG R G + L+G +GAGK+TL+ ++G +G +G+I
Sbjct: 2 ILMQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQ 56
Query: 902 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE 958
+G P + AR Y Q +P W L +TR + +
Sbjct: 57 FAGQPLEAWSATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLND 108
Query: 959 VMELVEL-KPLIQSLVGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLD 1012
V + L L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 109 VAGALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164
Query: 1013 ARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ + R + G +V + H + A +L+KRG
Sbjct: 165 VAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 21/159 (13%)
Query: 869 LTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YPKKQETFARIS-G 917
+TAL+G SG GK+TL+ D++ G K ITG +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 918 YCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976
Q +PF +++YE++ Y LR D + +E + L ++ +
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH 142
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 143 AF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+T L+D+S ++ G L+GP GK+TLL +AG + SG V +G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 219 MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSR 259
+ P Y+ Q D + +TV + +A QGV
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA 106
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 61/258 (23%), Positives = 100/258 (38%), Gaps = 54/258 (20%)
Query: 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA 228
+D+S I G + LG +GK+T L L G L L SG+V NG D P R
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVNGKD-----PFRRR 92
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI 288
+ + M + L + E+L + PD D + + +
Sbjct: 93 EEYLRSIGLV--MGQKLQLWW---DLPALDSLEVLKLIYE-------IPD---DEFAERL 137
Query: 289 ATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMD 348
D+ ++L L + + + R +S G+R R ++ P LF+D
Sbjct: 138 -----------DFLTEILDL----EGFLKWPV-RKLSLGQRMRAELAAALLHPPKVLFLD 181
Query: 349 EISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI-------ILLSDG 401
E + GLD + I LK++ T +++ T+ FDDI +L+ G
Sbjct: 182 EPTVGLDVNAQANIREFLKEYNEERQATVLLT-------THI-FDDIATLCDRVLLIDQG 233
Query: 402 QIVYQGPRELVLEFFESM 419
Q+V+ G + E F
Sbjct: 234 QLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 871 ALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS---GYCEQN---DI 924
A++G +GAGK+TL +G +G++ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984
SP TV + + + + +D ET + + ++ L+ L + P LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGID 1043
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1044 IFDAFDELFLMKRGG-------QEIYVGP 1065
+ + D +++M +G +EI++ P
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 4e-08
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ---ET 911
L+ +S RPG A++G G+GK+TL+ +L G + T G ++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
R GY Q D + T+ +++ A P D E I EL + ++
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDEE----ILRAAELAGVTEFVRR 586
Query: 972 -------LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+G G LS QR+ + +A L+ +P I+ +DEPTS +D R+ ++
Sbjct: 587 HPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645
Query: 1025 NTVDTGRTVVCTIHQP 1040
+ G+T+V H+
Sbjct: 646 RWL-AGKTLVLVTHRT 660
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 5e-08
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 26/194 (13%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVL-------SGRKTGGYITGNITISGYPKKQ 909
L+GL+ RPG AL+G SGAGK+TL +L SGR I + G +Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR---------ILLDGVDLRQ 406
Query: 910 ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
E AR++ + + + +V E++ Y EV++ R E + L
Sbjct: 407 LDPAELRARMALVPQDPVLFA--ASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--AL 462
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ +G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + +
Sbjct: 463 PEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-E 520
Query: 1026 TVDTGRTVVCTIHQ 1039
T+ GRT + H+
Sbjct: 521 TLMKGRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 869 LTALMGVSGAGKTTLM-------DVLSG-RKTGGYITGNITISGYPKKQETFARISGYCE 920
+TAL+G SG GK+TL+ D++ G R TG + I R G
Sbjct: 34 VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVF 93
Query: 921 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979
Q +PF ++YE++ Y R+ E + +T +E+ ++ L ++ + +
Sbjct: 94 QRP--NPFPKSIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL- 148
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
LS Q++RL IA L NP +I MDEP S LD A A
Sbjct: 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 47/209 (22%), Positives = 71/209 (33%), Gaps = 49/209 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+ D+S + G + GP +GKTTLL LAG L +G V + G + E
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNV-RE 71
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
Y+ E+T E L F N A I
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHF-------------WQRFHGSGNAATIW------ 112
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+A+A + + GLE D + +S G+++RV + + PA
Sbjct: 113 ---EALA------------QVGLAGLE--------DLPVGQLSAGQQRRVALARLWLSPA 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVH 371
+DE T LD + + H
Sbjct: 150 PLWILDEPFTALDKEGVALLTALMAAHAA 178
|
Length = 209 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 6e-08
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYI---TGNITISGYPKKQETFARISGYCEQN 922
G L L+G +GAGKTTL+ R G I G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 923 DIHS-----PFVTVYESLLYS-----AWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
H P ++V +++ WLR P D + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 1033 VVCTIH 1038
++ T H
Sbjct: 166 ILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 6e-08
Identities = 59/205 (28%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 844 MKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS 903
M+L V L LS R G + L+G +GAGK+TL+ ++G G +G+I +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 904 GYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
G P + AR Y Q + V++ L L P + +E + EV
Sbjct: 56 GQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVA 111
Query: 961 ELVELKPLIQSLVGLPGVSGLSTE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLDA 1013
E + L + V +SG E QR RL AV L NP+ ++ +DEP + LD
Sbjct: 112 EALGLDDKLGRSVN--QLSG--GEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDV 166
Query: 1014 RAAAIVMRTVRNTVDTGRTVVCTIH 1038
A + R + G VV + H
Sbjct: 167 AQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 7e-08
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD---M 219
T+L DVS I+ G + LLGP SGK+TLL +AG L+ SG + +G D +
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-LEE--PDSGSILIDGEDLTDL 67
Query: 220 GEFVP--ERTAAYISQHDNHIGEMTVRETLAF 249
+ +P R + Q +TV E +A
Sbjct: 68 EDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 849 VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY------ITGNITI 902
V +L LS PG +TAL+G +GAGK+TL+ L+G TGG +TG++T+
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 903 SGYP 906
+G P
Sbjct: 69 NGEP 72
|
Length = 272 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 38/231 (16%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG-YPKKQ 909
E++LV LN +S F + ++G SG+GK+TL+ +G Y G I + Y +
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDK 93
Query: 910 ETFARISGYCEQNDIHS--------PFV-----------TVYESLLYSAWLRLPPEVDSE 950
+ + I + V T+ + +++ + +++
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK 153
Query: 951 TRKMFIEEVMEL----VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1006
F M L +E P GLS Q++R+ IA L P I+ DE
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDE 202
Query: 1007 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
PT+GLD + +M+ + + +TV H + + DE+ +M +G
Sbjct: 203 PTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 7e-08
Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 40/215 (18%)
Query: 846 LQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG- 904
L +EDK +L GL+ RPG + A+MG +G+GK+TL L+GR+ G + G
Sbjct: 7 LHVSVEDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGK 65
Query: 905 --------------------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP 944
YP I G Q + + V R
Sbjct: 66 DLLELSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQ 112
Query: 945 PEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1003
+D + +EE + L+++ L+ V + G S ++KR I V P +
Sbjct: 113 EPLDRFDFQDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCI 168
Query: 1004 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
+DE SGLD A IV V + D R+ + H
Sbjct: 169 LDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203
|
Length = 248 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 61/281 (21%), Positives = 110/281 (39%), Gaps = 73/281 (25%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
FE++ F+Y +K LKD++ IKPG ++GP +GKTTL+ L D
Sbjct: 5 FENVNFSY------DEKKPV-LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ- 56
Query: 207 KVSGRVTYNG---HDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
G++ +G D+ + Q D + T+ E +
Sbjct: 57 --KGQILIDGIDIRDISRKSLRSMIGVVLQ-DTFLFSGTIMENIRLG------------- 100
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLEVCADTMVGDEMI 321
+P+ + ++A G ++ L G DT++G+
Sbjct: 101 ------------RPNATDEEVIEAAKEAG------AHDFIMKLPNGY----DTVLGE--- 135
Query: 322 RG--ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
G +S GER+ + M+ L +DE ++ +D+ T I L++ + G I
Sbjct: 136 NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK---LMKGRTSI 192
Query: 380 ------SLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
S ++ A D I++L DG+I+ +G + +L
Sbjct: 193 IIAHRLSTIKNA-------DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 44/173 (25%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE 910
+ +LL LS G A++G +GAGK+TL+ +L+G G ++G + + G K
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-- 386
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
GY +Q+ +T +EE+ E +
Sbjct: 387 -----IGYFDQH--------------RDELD------PDKTV---LEELSEGFPDGDEQE 418
Query: 971 SL-----VGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 419 VRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L GLS + G TAL+G +GAGK+TL+ L+G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 917 ---GYCEQNDIHSPFV-TVYESLLYSAW-LRL-PPEVDSETRKMFIEEVMELVELKPLIQ 970
G Q+ F TV++ + + + L EV+ EE ++ V +
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV-----EEALKAVRMWDFRD 133
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 1031 RTVVCTIH 1038
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 1e-07
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 44/186 (23%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
+L+G++ +TALMG SG+GK+TL+ V N I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 916 SG--YCEQNDIHS--------------------PFVTVYESLLYSAWLRLPPEVDSETRK 953
SG Y + DI P ++++E++ L+L V S+ ++
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSK-KE 118
Query: 954 MF--IEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+ + +E +L ++ + P LS Q++RL IA L P ++ DEPT+ L
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 1012 DARAAA 1017
D A
Sbjct: 178 DPENTA 183
|
Length = 250 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 48/206 (23%), Positives = 75/206 (36%), Gaps = 48/206 (23%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM-----GE 221
+LK ++ + G + LLG +GK+TLLL L G L SG V +G + G
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 222 FVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ + Q D+ + V + +AF G+ E+ RR EA
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------- 111
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L +G + +SGGE+KRV +
Sbjct: 112 ----------------------LTAVGASGLR-----ERPTHCLSGGEKKRVAIAGAVAM 144
Query: 341 PALALFMDEISTGLDSSTTFQIVNCL 366
L +DE + GLD + Q++ L
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQMLAIL 170
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 31/217 (14%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L++VS + PG L+G +GK+TLL LAG+L+ SG VT G V
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVT---RPKGLRV-- 68
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
Y+SQ E TV + + +G G ELL EL D +
Sbjct: 69 ---GYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 286 KAIATEGQ---EANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ EA L LG D V +SGG R+RV ++
Sbjct: 121 ALLEELDGWTLEARAEEA--LLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEP 172
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
L +DE + LD + + + LK++ GT ++
Sbjct: 173 DLLLLDEPTNHLDLESIEWLEDYLKRY----PGTVIV 205
|
Length = 530 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 33/193 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL+ ++ ++PG + ++GP SGK+TL LAG+ D + G V + G D+ E PE
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQ--GVGSRYELLTELARRENEAGIKPDPDIDV 283
A GE +AF + GV +++ L T L + G +P D
Sbjct: 74 DRA----------GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GPA 342
+++ + K+ L++ D + + G SGGE+KR +M V P
Sbjct: 121 -----------QDLMEE---KIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPE 165
Query: 343 LALFMDEISTGLD 355
L + +DE +GLD
Sbjct: 166 LCI-LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP-------KK 908
+L+ +S + G + A++G SG+GK+TL+ +L G T +G++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
E + G+ Q P T E++ +P + + +E++ L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENV------AMPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016
P S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 136 EHRANHRP--SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 2e-07
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 37/216 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY--ITGNITISGYPKKQETFAR 914
L GLS + G AL+G +G GK+TL+ +L T + G I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 915 ISGYCEQNDIHSPFVTVYESL-LYSAWLR------LPPEVDSETRKMFIEEVMELVELKP 967
I+ Y E + V + + L+SA LR P D + EV++ V L+
Sbjct: 404 IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA-----LIEVLQQVGLEK 457
Query: 968 LIQSLVGLP---GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
L++ GL G G LS +++RL IA L+ + ++ +DEPT GLDA ++
Sbjct: 458 LLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL 517
Query: 1023 VRNTVDTGRTVVCTIHQ-PGIDIFDAFDELFLMKRG 1057
+ +TV+ H+ G+ + FD + +M G
Sbjct: 518 LA-EHAQNKTVLMITHRLTGL---EQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 38/193 (19%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNI-TISGYPKKQETFARISGYCEQND 923
RPG + ++G +G GK+T + +L+G + N+ P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGE-----LKPNLGRYEDPPSWDEVIKRFRGTELQN- 151
Query: 924 IHSPFVTVYESLLYSAWLR----------LPPEVDSETRKM--------FIEEVMELVEL 965
Y LY LR +P V + ++ +EV+E + L
Sbjct: 152 --------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGL 203
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ ++ VS LS + +R+ IA L+ + + F DEP+S LD R R +R
Sbjct: 204 ENVLDR-----DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 1026 TVDTGRTVVCTIH 1038
+ G+ V+ H
Sbjct: 259 LAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 31/205 (15%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITG-NITISGYPKKQETFARISGYCEQ 921
G + +MG+SG+GK+T + +L+ T G +I G NI + +E + G Q
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78
Query: 922 NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG- 980
P +T+ ++ L + RK E+ +EL++L VGL
Sbjct: 79 QFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKL-------VGLEEYEHR 125
Query: 981 ----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVC 1035
LS ++R+ +A L A P I+ MDE S LD + ++ T +T+V
Sbjct: 126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF 185
Query: 1036 TIHQPGIDIFDAF---DELFLMKRG 1057
H D+ +A D + +MK G
Sbjct: 186 ITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDI 1044
++RL IA LV P ++FMDEPT GLD A ++ +R V + G VV H +
Sbjct: 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216
Query: 1045 FDAFDELFLMKRGG 1058
A D L +MK+G
Sbjct: 217 LLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 320 MIRGISGGERKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV 378
+ +SGG+R+RV ++ P L L +DE ++GLD ++ +++ L++ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRELA--EEGRTV 133
Query: 379 ISLLQPAPETYDLFDDIILLSDGQ 402
I + D +I+L DG+
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 71/253 (28%), Positives = 105/253 (41%), Gaps = 50/253 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
ILK +S ++ G ++GP SGK+TL L G SG V +G D+ ++ E
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVG---IWPPTSGSVRLDGADLRQWDRE- 406
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
Q HIG + Q V EL + EN A + D + K
Sbjct: 407 ------QLGRHIGYLP-----------QDV----ELF-DGTIAENIARFGEEADPE---K 441
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG-PALAL 345
I EA + + +L L DT +G+ +SGG+R+R+ + G P L +
Sbjct: 442 VI-----EAARLAGVHELILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFL-V 494
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI-----SLLQPAPETYDLFDDIILLSD 400
+DE ++ LDS + + GT V+ S L D I++L D
Sbjct: 495 VLDEPNSNLDSEGEAALAAAIL-AAKARGGTVVVIAHRPSALASV-------DKILVLQD 546
Query: 401 GQIVYQGPRELVL 413
G+I GPRE VL
Sbjct: 547 GRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L+ +S PG AL+G SG+GK+TL++++ + +G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 917 GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEV------MELVELKPL 968
D+ T+ ++ Y + D IE + V+ PL
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGR----TEQADRAE----IERALAAAYAQDFVDKLPL 457
Query: 969 -IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+ + +G GV LS QR+RL IA L+ + I+ +DE TS LD
Sbjct: 458 GLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 62/264 (23%), Positives = 115/264 (43%), Gaps = 45/264 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+ ++++ I G T ++GP GK+TLL L+ + G V +G + + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77
Query: 226 RTAAYI---SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A I +Q+ G++TV+E +A +G L T R+E+E +
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVA-----RGRYPHQPLFTRW-RKEDEEAV------- 124
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
T+ +A IT + D+ + +SGG+R+R ++
Sbjct: 125 -------TKAMQATGITH---------------LADQSVDTLSGGQRQRAWIAMVLAQET 162
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD S ++ L + ++ G + ++L + +I L +G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 403 IVYQG-PRELVL-EFFESM-GFKC 423
IV QG P+E+V E E + G +C
Sbjct: 222 IVAQGAPKEIVTAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 21/213 (9%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR 914
LL+ L+ RPG + G SGAGKT+L+ L+G + +G I P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL-- 459
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
+ Q + P T+ E+L Y P+ + V+ V L L + L
Sbjct: 460 ---FLPQRP-YLPQGTLREALCYP---NAAPDFSDAE----LVAVLHKVGLGDLAERLDE 508
Query: 975 L-PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1033
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 1034 VCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066
+ H+P + F + +L L+ G + P
Sbjct: 568 ISVGHRPTLWNFHS-RQLELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 58/259 (22%), Positives = 96/259 (37%), Gaps = 53/259 (20%)
Query: 150 DIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVS 209
I G P LT + G +T ++GP SGK+TLL +AG S
Sbjct: 5 KIRFSYGEQPMHFD-LTFAQ--------GEITAIVGPSGSGKSTLLNLIAGFE---TPQS 52
Query: 210 GRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELAR 268
GRV NG D+ P +R + + Q +N +TV + + G+ +L E
Sbjct: 53 GRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL-----GLSPGLKLTAE--D 105
Query: 269 RENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328
R+ + K + E +SGGE
Sbjct: 106 RQAIEVALARVGLAGLEKRLPGE--------------------------------LSGGE 133
Query: 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388
R+RV ++V L +DE LD + ++++ L +H + V+ + +
Sbjct: 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD-LVLDLHAETKMTVLMVTHQPEDA 192
Query: 389 YDLFDDIILLSDGQIVYQG 407
L ++ L +G+I QG
Sbjct: 193 KRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 3e-07
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
LL +S G L L G +GAGKTTL+ +++G G I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 916 SGYC---EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
C ++ I +P++T+ E+ LY ++ + I E+ L L+ LI
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1033 VVCTIHQ 1039
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 31/206 (15%)
Query: 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 920
F G +TA++G SG+GK+TL+++++G +T +G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 921 QNDIHSPFVTVYES--LLYSAWLRLPPE----VDSETRKMFIEEVMELVELKPLIQSLVG 974
+N++ +TV ++ L S L+L E ++ ++ + + +
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR------------ 124
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 1031
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRG 1057
TV+ HQP D + + G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTT---LMDVLSGRKTGGYITGNITISG---YPKKQE 910
L G+S + A +G SG GK+T L + ++ + G I I G Y K +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 911 T--FARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+ G Q +PF +++E++ Y LR+ D+ + +EE ++ L
Sbjct: 79 VDELRKNVGMVFQRP--NPFPKSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAALWD 134
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
++ + + LS Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 135 EVKDKLKESAFA-LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 54/237 (22%), Positives = 92/237 (38%), Gaps = 49/237 (20%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL ++S ++ G L+ GP GK+TLL +A + + SG + + G D+ PE
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 226 R---TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+Y +Q G+ TV + L F +++ +PDP
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI----------RNQQPDP--- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ L+ L DT++ + I +SGGE++R++ +
Sbjct: 115 ---AIFLDD-----------LERFAL---PDTIL-TKNIAELSGGEKQRISLIRNLQFMP 156
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399
L +DEI++ LD S VN + AV+ + E D +I L
Sbjct: 157 KVLLLDEITSALDESNK-HNVNEIIHRYVREQNIAVLWVTHDKDEINHA-DKVITLQ 211
|
Length = 225 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 58/254 (22%)
Query: 828 SLTFDEV--VYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD 885
S+ F+ V +YS P M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTP--MEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQ 51
Query: 886 VLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945
+ +G ITI+GY ET G + V++ P
Sbjct: 52 HFNALLKPS--SGTITIAGYHITPET-----GNKNLKKLRKKVSLVFQF----------P 94
Query: 946 EVDSETRKMFIEEVMELVELKPL----------IQSLVGLPGVSGLSTE----------- 984
E ++F V++ VE P ++L L V GLS +
Sbjct: 95 EA-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSG 148
Query: 985 -QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGID 1043
Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H D
Sbjct: 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-D 207
Query: 1044 IFDAFDELFLMKRG 1057
+ + D++ +++ G
Sbjct: 208 VAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 64/259 (24%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----VP 224
+DVS + PG + ++G SGK+TLL LAG+L G TY E +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 225 E-------RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK 276
E RT ++ Q+ M V R +G+R+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
Y AT D+ +V E+ + D++ R SGG ++R+
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
+V P L +FMDE + GLD S ++++ L+ V + G AVI + L +
Sbjct: 162 NLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLV-RDLGLAVIIVTHDLGVARLLAQRL 219
Query: 396 ILLSDGQIVYQGPRELVLE 414
+++ G++V G + VL+
Sbjct: 220 LVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP------KKQ 909
+L +S + G L+G SG GK+TL +L G + G ++ G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 910 ETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
F R Q+ + P +TV + + LR +D +K I E++++V L+
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 ED--ADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL+ VS + G +T +LG GKTTLL L G L SG + +G D+ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 226 RTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSR------YEL---LTELARR 269
A AY+ Q +TV E L SR YEL L E+ R
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGR 127
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 67/277 (24%), Positives = 105/277 (37%), Gaps = 74/277 (26%)
Query: 157 ILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
+ +T LKDVS + G + ++G +GK+TL+ + G L+ SG V +G
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERP--TSGSVLVDG 66
Query: 217 HDMGEFVP------ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE 270
D+ R I QH N + TV E +A GV E+ R
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPK-----AEIEERV 121
Query: 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERK 330
E L+++GLE AD +SGG+++
Sbjct: 122 LE-----------------------------LLELVGLEDKADA-----YPAQLSGGQKQ 147
Query: 331 RVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPA 385
RV + ALA L DE ++ LD TT I+ L+ IN + +L
Sbjct: 148 RVG-----IARALANNPKVLLCDEATSALDPETTQSILALLRD---INRELGLTIVLI-- 197
Query: 386 PETY------DLFDDIILLSDGQIVYQGPRELVLEFF 416
T+ + D + ++ G++V +G V E F
Sbjct: 198 --THEMEVVKRICDRVAVMEKGEVVEEGT---VEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITGN-ITISGYPKKQET 911
L G++ + G +L+G SG GK+TL++++SG + T G + G IT G P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
F QN P++TV E+ + A R+ P++ R+ +EE + LV L
Sbjct: 60 F--------QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK 110
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
G LS ++R+ IA L P ++ +DEP LDA
Sbjct: 111 RPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI-TGNITISGYPKKQ--ETFARISGYC 919
R G + +MG+SG+GK+TL+ ++ T G + I+ +K+ E +
Sbjct: 48 REGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMV 107
Query: 920 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979
Q+ P TV E++ + ++ V R+ E +ELV L+
Sbjct: 108 FQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD----- 159
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
LS ++R+ +A L +P I+ MDE S LD
Sbjct: 160 ELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 39/219 (17%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
IL D++ I+ G+M ++G SGK+TLL + G L+ SG+V NG +
Sbjct: 8 FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEK--FDSGQVYLNGQE--- 61
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN-EAGIKPDPD 280
T S+ + RE L + + + L+ EN + G+K
Sbjct: 62 -----TPPLNSKKASKF----RREKLGY------LFQNFALIENETVEENLDLGLK---- 102
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
Y K E +E L+ +GL + + + +SGGE++RV ++
Sbjct: 103 ---YKKLSKKEKREKKK---EALEKVGLNLKLKQKIYE-----LSGGEQQRVALARAILK 151
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
P + DE + LD ++++ L + + G +I
Sbjct: 152 PPPLILADEPTGSLDPKNRDEVLDLLLELN--DEGKTII 188
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 61/270 (22%), Positives = 99/270 (36%), Gaps = 59/270 (21%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
+ + DV+ I+ G +L+GP SGKTT L + ++ + SG + +G D+ +
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDL 68
Query: 223 VPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
P R Y+ Q +TV E +A + G
Sbjct: 69 DPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK--------------------- 107
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
+ D L ++GL+ D +SGG+++RV V
Sbjct: 108 -------------ERIKKRADELLDLVGLDPSE---YADRYPHELSGGQQQRVG-----V 146
Query: 340 GPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
ALA L MDE LD T Q+ +K + G ++ + E L D
Sbjct: 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHDIDEALKLADR 205
Query: 395 IILLSDGQIVYQG-PRELVL----EFFESM 419
I ++ G+IV P E++ +F E
Sbjct: 206 IAVMDAGEIVQYDTPDEILANPANDFVEDF 235
|
Length = 309 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 55/241 (22%), Positives = 91/241 (37%), Gaps = 50/241 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE- 225
IL ++S ++ G + GP GK+TLL +A L S SG + + G D+ PE
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVA-SLISP--TSGTLLFEGEDVSTLKPEA 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ +Y +Q G+ TV + L F + R +PD +
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ--------------IRNR-----RPDRAAAL 114
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMMVGPA 342
+ A D L + I +SGGE++R+ + P
Sbjct: 115 DLLARFALP-------DSIL--------------TKNITELSGGEKQRIALIRNLQFMPK 153
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ L +DEI++ LD S I + ++V AV+ + + D +I L G
Sbjct: 154 I-LLLDEITSALDESNKRNIEEMIHRYVR-EQNVAVLWITHDKDQAIRHADKVITLQPGH 211
Query: 403 I 403
Sbjct: 212 A 212
|
Length = 223 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISG---YPKKQETFA--RISG 917
P +TA +G SG GK+T++ L+ G + G + + G Y + A R G
Sbjct: 29 PRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIG 88
Query: 918 YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 977
Q P +++ ++++ A L+L + + +E+ + L ++ + PG
Sbjct: 89 MVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPG 146
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 147 -GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 6e-07
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 872 LMGVSGAGKTTLMDVLS----GRKTGGYITGN-ITISGYPKKQETFA--RISGYCEQNDI 924
L+G SGAGK++L+ VL+ R I GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984
P +TV E+L+ + P V ++ + +L++ L P LS
Sbjct: 93 LWPHLTVQENLIEA-----PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--LHLSGG 145
Query: 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+ +
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV 203
|
Length = 242 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 6e-07
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 869 LTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISGY----PKKQETFARIS-GYCE 920
+TA++G SG GKTTL+ + ++ G + G I G P+ T R G
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVF 90
Query: 921 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980
Q P +++Y+++ + R+ +EE ++ L ++S + PG
Sbjct: 91 QKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTR- 146
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015
LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 46/246 (18%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
+HL + D++ + G + ++GP +GK+TLL +AG ++ SG + N
Sbjct: 11 EHLPMEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGL 65
Query: 223 VP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
P +R + + Q +N +TVR+ + G+ P
Sbjct: 66 APYQRPVSMLFQENNLFAHLTVRQNIGL------------------------GLHPG--- 98
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
+K A + ++ + +G+ AD + D + +SGG+R+RV +V P
Sbjct: 99 ---LKLNAEQQEKVVDAA----QQVGI---ADYL--DRLPEQLSGGQRQRVALARCLVRP 146
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE + LD +++ +KQ T ++ + + + I ++S G
Sbjct: 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQG 205
Query: 402 QIVYQG 407
+I
Sbjct: 206 KIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 6e-07
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG---YPKKQE 910
L+G+S F LTAL+G SG GK+T + L+ ITG I G Y K +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 911 TFA--RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
+ G Q PF +VY+++ Y L++ D E +EE ++ +
Sbjct: 80 LVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKE 136
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
+ + S Q++R+ IA L P ++ +DEPTS LD +++ + T+
Sbjct: 137 TKDNLD-RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
|
Length = 251 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-07
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L+ +S R G + +L G +GAGK+TLM VLSG G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 917 GYCEQND---IHS-----PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
E+ IH ++V E++ + +D + M++ L +LK
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYD--AMYLRAQKLLAQLKLD 134
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
I P V L Q++ + IA L ++ +DEPT+ L A+++ +R+
Sbjct: 135 IN--PATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188
|
Length = 506 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-07
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP---KKQET 911
L+ +S + G + AL+G +G+GK+TL+ ++G +G I I G E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 912 FARISGYCEQ 921
R GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 47/224 (20%), Positives = 77/224 (34%), Gaps = 49/224 (21%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+ + +S + G + GP GKTTLL LAG L SG V +NG + E
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRD 69
Query: 225 ERT--AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
E Y+ E++ E L F A G G++ + LA
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIHG-GAQRTIEDALAA-------------- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+GL D +S G+++R+ + + A
Sbjct: 115 -----------------------VGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRA 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386
+DE +T LD + + L+ H+ G +++ Q
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLG 189
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 58/262 (22%), Positives = 94/262 (35%), Gaps = 71/262 (27%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTT---LLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
++ +S ++ G LLGP +GKTT +LL L S+ + GE
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC----------GEP 70
Query: 223 VPERT------AAYISQHDNHIGEMTVRETLAFSARCQGVGS-----RYELLTELARREN 271
VP R + Q DN + TVRE L R G+ + L E A+ EN
Sbjct: 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN 130
Query: 272 EAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKR 331
+A D + +SGG ++R
Sbjct: 131 KA--------------------------------------------DAKVGELSGGMKRR 146
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391
+T +V L +DE +TGLD + L+ + G ++ E L
Sbjct: 147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS--LLARGKTILLTTHFMEEAERL 204
Query: 392 FDDIILLSDGQIVYQG-PRELV 412
D + ++ +G+ + +G P L+
Sbjct: 205 CDRLCVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDI 1044
++RL IA LV P ++FMDEPT GLD A ++ +R V D G V+ H G+
Sbjct: 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVAR 213
Query: 1045 FDAFDELFLMKRG 1057
A L +M++G
Sbjct: 214 LLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 41/210 (19%)
Query: 865 RPGVLTALMGVSGAGKTTL-------MDVLSGRKTGGYITGNITISGYPKKQETFARISG 917
+PG + G +G+GK++L +D+ G+ + I IS P +R+S
Sbjct: 45 KPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL-HTLRSRLS- 98
Query: 918 YCEQNDIHSPFVTVYESLLYSAWLR--LPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
+ + + +L+S +R L PE +++ E +E+ +LK +++SL G
Sbjct: 99 -----------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLKNMVKSLPG- 144
Query: 976 PGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
G+ + TE QR+ +A V SI+ MDE T+ +D I+ + V T
Sbjct: 145 -GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVM-TA 202
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
RTVV H+ I DA D + ++ RG
Sbjct: 203 FADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 51/250 (20%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
K +LK VS I G + ++G SGK+TLL L G LD+ SG V +NG +
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNP--TSGEVLFNGQSLS- 70
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
N ++ + L F + + LL + EN
Sbjct: 71 ----------KLSSNERAKLR-NKKLGF------IYQFHHLLPDFTALEN---------- 103
Query: 282 DVYMKAIAT--EGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
V M + +EA L+ +GLE + + +SGGER+RV +V
Sbjct: 104 -VAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSE-----LSGGERQRVAIARALV 157
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-----FDD 394
+ DE + LD++ +I+ L ++ T+ + + T+DL D
Sbjct: 158 NQPSLVLADEPTGNLDNNNA-KIIFDLMLELNRELNTSFLVV------THDLELAKKLDR 210
Query: 395 IILLSDGQIV 404
++ + DGQ+
Sbjct: 211 VLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGHDMGEFVPE 225
ILK V+ IK G + L+GP SGK+TL + G +V G + + G D+ + PE
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGEDITDLPPE 72
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 26/217 (11%)
Query: 840 MPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT 897
M E+K G L +LN +S + R G A+ G SG GK+TL+ +++ T G +
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 898 --GNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF 955
G +S K E + + YC Q TV ++L++ +R R
Sbjct: 62 FEGE-DVSTL--KPEAYRQQVSYCAQTPALFG-DTVEDNLIFPWQIR----NRRPDRAAA 113
Query: 956 IEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015
++ ++ L I + ++ LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LD-LLARFALPDSILT----KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168
Query: 1016 A----AIVMRTVRNTVDTGRTVVCTIHQP--GIDIFD 1046
++ R VR + V+ H I D
Sbjct: 169 KRNIEEMIHRYVR---EQNVAVLWITHDKDQAIRHAD 202
|
Length = 223 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISGYPKKQETF- 912
LN ++ +TAL+G SG GK+T + L+ G I GN+ G F
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 913 ----ARISGYCEQNDIHSPFV-TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
R G Q +PF+ ++Y+++ Y P++ K ++E++E K
Sbjct: 83 ILELRRKIGMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQSLKKS 134
Query: 968 LIQSLVGLP---GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+ + V LS Q++RL IA L P++I MDEPTS LD + + +
Sbjct: 135 ALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELII 194
Query: 1025 NTVDTGRTVVCT 1036
N ++ ++ T
Sbjct: 195 NLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ--ET 911
+N S G + +MG+SG+GK+TL+ +L+ T G I I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
+ Q+ P TV E++ + ++ P+ + E R E +ELV L+
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREER---ALEALELVGLEGYADK 160
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
LS ++R+ +A L +P I+ MDE S LD
Sbjct: 161 YPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 20/156 (12%)
Query: 869 LTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG---YPKKQETFA--RISGYCE 920
+TAL+G SG GK+T + L+ + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 921 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG---LP 976
Q +PF +++Y+++ Y P + K +++++E K + V
Sbjct: 92 QKP--NPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
LS Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 70/258 (27%), Positives = 110/258 (42%), Gaps = 46/258 (17%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
IL D+S IK T ++G SGK+TL L G + SG + NG + + +R
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDI--DR 543
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ Q N++ + E FS GS E L G K + D
Sbjct: 544 HT--LRQFINYLPQ----EPYIFS------GSILENLL--------LGAKENVSQDEIWA 583
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
A A + D LG T + +E ISGG+++R+ ++ + L
Sbjct: 584 ACEI----AEIKDDIENMPLGY----QTELSEEG-SSISGGQKQRIALARALLTDSKVLI 634
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTA--VISLLQPAPETYDLFDDIILLSDGQIV 404
+DE ++ LD+ T +IVN L +++ T V L A ++ D II+L G+I+
Sbjct: 635 LDESTSNLDTITEKKIVNNL---LNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGKII 687
Query: 405 YQGP-RELVLE--FFESM 419
QG EL+ F+ S+
Sbjct: 688 EQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)
Query: 866 PGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQETFARISGY 918
+TAL+G SG GK+T + D++ K I G + + G Q+ Y
Sbjct: 28 ENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----QDI------Y 73
Query: 919 CEQNDIHS-------------PF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV- 963
D++ PF +++Y+++ Y P K ++E++E
Sbjct: 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG------PRTHGIKDKKKLDEIVEKSL 127
Query: 964 -------ELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
E+K L +S +GL G Q++RL IA L P ++ MDEPTS LD
Sbjct: 128 KGAALWDEVKDRLKKSALGLSG------GQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 56/258 (21%), Positives = 91/258 (35%), Gaps = 69/258 (26%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE------ 221
+ V+ ++ G + LGP +GKTT + L L + SG G+D+
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 222 ----FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
VP+ + ++T RE L R G L + E E +
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYG----------LPKDEAEERAEE 107
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
L++ L D + SGG R+R+
Sbjct: 108 ------------------------LLELFEL-----GEAADRPVGTYSGGMRRRLDIAAS 138
Query: 338 MVGPALALFMDEISTGLDSST---TFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
++ LF+DE +TGLD T + + LK+ G ++ E L D
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-----EGVTILLTTHYMEEADKLCDR 193
Query: 395 IILLSDGQIVYQG-PREL 411
I ++ G+I+ +G P EL
Sbjct: 194 IAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+ +L+D++ ++ G +LGP GK+TLL +AG + SG V +G + P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP 72
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSR 259
+ Y+ Q D + +TV + +A +G
Sbjct: 73 DI--GYVFQEDALLPWLTVLDNVALGLELRGKSKA 105
|
Length = 248 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 62/256 (24%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L+DVS I G L GP +GK+TLL + G+ + G++ NGHD+ + R
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSR-LKGR 72
Query: 227 TAAYISQH------DNH-IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
++ + D + + TV E +A R G R E+ RR +E
Sbjct: 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV------ 121
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
L ++GL+ A + +SGGE++RV +V
Sbjct: 122 -----------------------LDLVGLKHKARALPSQ-----LSGGEQQRVAIARAIV 153
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVISLLQPAPETYDLFDD---- 394
L DE + LD +++I+ ++ IN GT V+ A +L +
Sbjct: 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEE---INRLGTTVLM----ATHDLELVNRMRHR 206
Query: 395 IILLSDGQIVYQGPRE 410
++ L DG++V R
Sbjct: 207 VLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+ ++S + PG + LLGP +GKTT + G L+ + G +T+NG + + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
R Y+ + +MTV + L + A +G+
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKGM 102
|
Length = 300 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLL--LALAGKLDSSLKVSGRVTYNGHD- 218
KH LKD++ I ++T L+GP GK+TLL L L +V G V +G +
Sbjct: 19 DKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI 76
Query: 219 --MGEFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
V E R + Q N M++ + +A+ R G+
Sbjct: 77 YDPKVDVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGI 117
|
Length = 253 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 323 GISGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
G SGGE+KR ++++ P LA+ DE +GLD + + + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 382 LQPAPETYDLFDDII-----LLSDGQIVYQGPRELVLEFFE 417
Q L D I +L DG+IV G +EL LE +
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 55/240 (22%), Positives = 96/240 (40%), Gaps = 47/240 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L+D++ ++ G + ++LGP GKTTLL +AG + G +T +G + ER
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER 72
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ Q++ + V++ +AF + GV +R A
Sbjct: 73 GVVF--QNEGLLPWRNVQDNVAFGLQLAGVEK--------MQRLEIA------------- 109
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
+ LK +GLE I +SGG+R+RV + L
Sbjct: 110 ------HQM-------LKKVGLE-----GAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQIV 404
+DE LD+ T Q+ L + +G V+ + E + +++LLS G++V
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQ-ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 56/259 (21%), Positives = 93/259 (35%), Gaps = 68/259 (26%)
Query: 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA-- 228
+S ++ G + L+GP +GK+TLL +AG L SG + + G + + A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 229 -AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKA 287
AY+SQ M V + L ++
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLT----------------------------------LHQPD 96
Query: 288 IATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI---SGGE--RKRVTTGEMMVGPA 342
A+ + EV + D++ R + SGGE R R+ + V P
Sbjct: 97 KTRTEAVASALN---------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147
Query: 343 L-----ALFMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
+ L +DE LD + ++++ L Q G AV+ T D
Sbjct: 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-----QGIAVVMSSHDLNHTLRHADR 202
Query: 395 IILLSDGQIVYQGPRELVL 413
+ LL G+++ G R+ VL
Sbjct: 203 VWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 25/212 (11%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQN 922
RP + ALMG +GAGK+TL+ L G +K +G+I G +E + S +N
Sbjct: 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFKSSKEALEN 73
Query: 923 DI---HSPFVTVYE-SLLYSAWL-RLPPE---VDSETRKMFIEEVMELVELKPLIQSLVG 974
I H V + S++ + WL R P + VD + KM+ + EL I
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQD--KMYRDTKAIFDELDIDIDPRAK 131
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
V+ LS Q + + IA N I+ MDEPTS L + + +R + G +V
Sbjct: 132 ---VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIV 188
Query: 1035 CTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066
H+ +IF DE+ ++ R GQ I PL
Sbjct: 189 YISHKME-EIFQLCDEITIL-RDGQWIATQPL 218
|
Length = 491 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 871 ALMGVSGAGKTTLMDVL--------SGRKTGG---YITGNI-TISGYPKKQETFARISGY 918
+MG SG+GK+TL+ VL S K G Y +I I ++E G
Sbjct: 40 GIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV-----GM 94
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978
Q P +++Y+++ Y L+ + K +EE + V L + + P
Sbjct: 95 VFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA- 151
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
S LS Q++RLTIA L P ++ MDEPTS +D + + + + + +V H
Sbjct: 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVSH 210
Query: 1039 QP 1040
P
Sbjct: 211 NP 212
|
Length = 257 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDI 1044
++RL IA LV +P ++FMDEPT GLD A ++ +R V + G VV H +
Sbjct: 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216
Query: 1045 FDAFDELFLMKRG 1057
A L +MK+G
Sbjct: 217 LLA-HRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 57/251 (22%), Positives = 96/251 (38%), Gaps = 59/251 (23%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
+L D+S +K G + LGP +GKTT + + G + SG +T++G +
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKN 67
Query: 223 --VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
R A I + +T RE L AR G+
Sbjct: 68 IEALRRIGALIEAPGFY-PNLTARENLRLLARLLGI--------------------RKKR 106
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
ID L V+GL+ + ++G S G ++R+ ++G
Sbjct: 107 IDE------------------VLDVVGLKD-----SAKKKVKGFSLGMKQRLGIALALLG 143
Query: 341 -PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV-IS--LLQPAPETYDLFDDII 396
P L L +DE + GLD ++ + + G V IS LL E + D I
Sbjct: 144 NPDL-LILDEPTNGLDPDGIKELRELI--LSLRDQGITVLISSHLLS---EIQKVADRIG 197
Query: 397 LLSDGQIVYQG 407
+++ G+++ +G
Sbjct: 198 IINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 3e-06
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 23/187 (12%)
Query: 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET---FARIS 916
L+ F +TA +G +GAGKTT + +L+G +G + + G K ET R S
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQS 1004
Query: 917 -GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
G C Q++I +TV E +L+ A L+ E ++ +E ++E L
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNE---- 1057
Query: 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRT 1032
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT
Sbjct: 1058 -EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRT 1112
Query: 1033 VVCTIHQ 1039
++ + H
Sbjct: 1113 IIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 25/166 (15%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
++ L G L+G SG GKTT++ +++G +T +G I + G + +
Sbjct: 30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVP 82
Query: 917 GYCEQNDIHS--------PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
E +++ P +TV+E++ + ++ P + R + E + +V+L+
Sbjct: 83 A--ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPR---VMEALRMVQLEEF 137
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
Q LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 138 AQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 49/248 (19%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK V+ + PG + LLG +GK+TL+ L+G + + G +T N + + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 228 A----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID- 282
A I Q + I E+TV E L + R LT + G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL-YIGR---------HLT-----KKVCGV---NIIDW 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
M+ A L +GL+V D V + +S ++ + + ++ A
Sbjct: 120 REMRVRAAM----------MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 343 LALFMDEISTGLDSSTT---FQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ MDE ++ L + F I+N L+ GTA++ + E + D ++
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLR-----KEGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 400 DGQIVYQG 407
DG V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 35/181 (19%)
Query: 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ- 909
L+ +N ++ R + +L+G +GAGKTT+ + L+G + TGG I I G P Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 910 ------ETFARISGYCEQNDIHSPFVTVYESLL-----------YSAWLRLPPEVDSETR 952
TF + + E +TV E+LL +S L+ P +E+
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 953 KM-FIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+ +E V L G L+ Q++RL IA +V P I+ +DEP +GL
Sbjct: 130 ALDRAATWLERVGLLEHANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGL 184
Query: 1012 D 1012
+
Sbjct: 185 N 185
|
Length = 255 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-06
Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 34/197 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L GL+ PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ----- 547
Query: 915 ISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETRKMFIEEVMELV---------- 963
+ + +H V E +L+S +R + EE+M
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 964 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
E + VG G S LS Q++R+ IA LV P ++ +DE TS LDA + +
Sbjct: 602 EFPNGYDTEVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLL 656
Query: 1024 RNTVDT-GRTVVCTIHQ 1039
+ + RTV+ H+
Sbjct: 657 QESRSRASRTVLLIAHR 673
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 44/205 (21%), Positives = 70/205 (34%), Gaps = 47/205 (22%)
Query: 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQH 234
+ G L+ G +GKTTLL LAG L SG++ +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 235 DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI-ATEGQ 293
H+ G+K D + + G+
Sbjct: 89 --HLP----------------------------------GLKADLSTLENLHFLCGLHGR 112
Query: 294 EANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTG 353
A + L ++GL DT+V R +S G++KR+ + + PA +DE
Sbjct: 113 RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 354 LDSSTTFQIVNCLKQHVHINSGTAV 378
LD + + H+ V
Sbjct: 168 LDLEGITLVNRMISAHLRGGGAALV 192
|
Length = 214 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-06
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 29/182 (15%)
Query: 847 QGVLE---DKLVLLNGLSGAFRPGVLTALMGVSGAGKTT----LMDVLSGRKTGGYITGN 899
+G+L+ D V++ +S RPG L+G SG+GK+T L+ +++ + G
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GE 341
Query: 900 ITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL--------LYSAWLRL-PPEVDSE 950
I G P R ++ I F SL + LR+ P + +
Sbjct: 342 IWFDGQPLHN--LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA 399
Query: 951 TRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010
R+ + VME V L P ++ P + S QR+R+ IA L+ PS+I +DEPTS
Sbjct: 400 QREQQVIAVMEEVGLDP--ETRHRYP--AEFSGGQRQRIAIARALILKPSLIILDEPTSS 455
Query: 1011 LD 1012
LD
Sbjct: 456 LD 457
|
Length = 529 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 3e-06
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 29/153 (18%)
Query: 870 TALMGVSGAGKTTLMDVLSG--RKTGGYITGN--------ITISGYPKKQETFARISGYC 919
TA+ G SGAGKT+L++ +SG R G I N I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 920 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979
Q+ P V +L Y + F ++++ L+ ++PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYP--G 127
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 37/187 (19%), Positives = 77/187 (41%), Gaps = 26/187 (13%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 924
R G + L+G +G GK+T + +L+G+ + N+ G + I +++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNL---GKFDDPPDWDEILDEFRGSEL 75
Query: 925 HSPFVTVYESLLYSAWL-----RLPPEVDSETRKM--------FIEEVMELVELKPLIQS 971
+ F + E + +P V + ++ ++E+++ +EL+ ++
Sbjct: 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1031
+ LS + +R+ IA L + F DEP+S LD + R +R +
Sbjct: 136 -----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 1032 TVVCTIH 1038
V+ H
Sbjct: 191 YVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 32/211 (15%)
Query: 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 889
FD+V +S D QGV +S +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 890 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLY----SAWLRL-- 943
++ +G I I G I + + V ++ L+ +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 944 PPEVDSETRKMF-IEEVMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001
P D E R + + +E KP ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 1002 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
+ +DE TS LD A V + + + GRT
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRT 522
|
Length = 588 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP------KK 908
LN +S + + G AL+G SG GK+TL +L G + G N++ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQ 83
Query: 909 QETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
++ F R Q+ I + P TV E + LR +D R E++ V+L
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+ P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 DSVLD--KRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 5e-06
Identities = 54/195 (27%), Positives = 76/195 (38%), Gaps = 52/195 (26%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
++ D+S I G LLGP +GK+T+ L G + G++T +GE VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ Q DN E TVRE L R G ++ RE EA I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS--- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L+ LE AD V +SGG ++R+T ++
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 341 PALALFMDEISTGLD 355
L +DE +TGLD
Sbjct: 153 DPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-06
Identities = 56/205 (27%), Positives = 80/205 (39%), Gaps = 41/205 (20%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
L+IL V ++K G L+G SGK+TLL LAG D S SG V+ G + +
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN---EAGIKPDPDI 281
E A ++H + F V + L+ L EN A ++ +
Sbjct: 80 EARAKLRAKH------------VGF------VFQSFMLIPTLNALENVELPALLRGESSR 121
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
A A L+ LGL D + +SGGE++RV G
Sbjct: 122 QSRNGAKA------------LLEQLGLGKRLDHLPAQ-----LSGGEQQRVALARAFNGR 164
Query: 342 ALALFMDEISTGLDSSTTFQIVNCL 366
LF DE + LD T +I + L
Sbjct: 165 PDVLFADEPTGNLDRQTGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 33/214 (15%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L +S + G A++G +G+GK+TL +L+G G IT+ G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 915 IS---GYCEQNDIHSP---FV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
+ G QN P FV TV + + + E R+ +E V + +
Sbjct: 79 VRRQVGMVFQN----PDNQFVGATVQDDVAFGL------ENIGVPREEMVERVDQALRQV 128
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
+ L P LS Q++R+ IA L P II +DE TS LD R V+ TVR
Sbjct: 129 GMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQL 186
Query: 1027 VDTGR-TVVCTIHQPGIDIFDAF--DELFLMKRG 1057
+ TV+ H D+ +A D + +M +G
Sbjct: 187 KEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 50/212 (23%), Positives = 85/212 (40%), Gaps = 56/212 (26%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYP-- 906
E + +L LS + G AL+G SG+GK+TL+ +L TG G IT+ G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLL----TGDLKPQQGEITLDGVPVS 67
Query: 907 KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
++ + + Q P+ L+ LR
Sbjct: 68 DLEKALSSLISVLNQ----RPY-------LFDTTLR------------------------ 92
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
+ +G S +R+RL +A L+ + I+ +DEPT GLD ++ +
Sbjct: 93 ----NNLGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE- 143
Query: 1027 VDTGRTVV-CTIHQPGIDIFDAFDELFLMKRG 1057
V +T++ T H GI + D++ ++ G
Sbjct: 144 VLKDKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 50/179 (27%), Positives = 70/179 (39%), Gaps = 36/179 (20%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
D L ++G+S R G L+G SG+GK+TL L G I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 910 ETFARISGYCEQNDIHSPFVTVYESL--------LYSAWLRL--PPEVDSETRKMFIEEV 959
R + F Y SL + LR+ P +E + IE +
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 960 MELVELKPLIQSLVGLPGVS------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
E VGL + S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 411 EE-----------VGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 41/173 (23%)
Query: 870 TALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YPKKQ---ETFARIS 916
TA +G SG GK+T + D + G + +TG IT+ G Y + E AR+
Sbjct: 48 TAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYDPRLDVVELRARV- 102
Query: 917 GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETR-KMFIEEVME--------LVELK 966
G Q +PF ++YE++ Y P + R K ++E++E E+K
Sbjct: 103 GMVFQKP--NPFPKSIYENVAYG------PRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
+ PG +GLS Q++RL IA + +P +I MDEP S LD A A V
Sbjct: 155 DRLHE----PG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 24/186 (12%)
Query: 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 920
G + A++G SGAGK+TL+++++G +T +G I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 921 QNDIHSPFVTVYES--LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978
+N++ + +TV ++ L S L+L ++E R+ +E V L ++ L PG
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKL----NAEQREK-VEAAAAQVGLAGFLKRL---PGE 129
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVV 1034
LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLL 184
Query: 1035 CTIHQP 1040
H P
Sbjct: 185 MVTHHP 190
|
Length = 231 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-06
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT-ISGYPKKQETF 912
+LN +S G + AL+G SG+GKTTL+ +++G +T G+I + T +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G+ Q+ +TV++++ + L + P + +V +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 68/261 (26%), Positives = 108/261 (41%), Gaps = 57/261 (21%)
Query: 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD--------MG 220
+DVS + PG + ++G SGKTTLL ++G+L +G VTY D M
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMS 79
Query: 221 EFVPERTA------AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
E ER ++ Q+ M V R +G+R+
Sbjct: 80 E--AERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH-------------- 123
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
Y I E Q+ +L+ EV D D++ R SGG ++R+
Sbjct: 124 ---------YGN-IRAEAQD-------WLE----EVEIDLDRIDDLPRTFSGGMQQRLQI 162
Query: 335 GEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
+V P L +FMDE + GLD S ++++ L+ V G AV+ + L D
Sbjct: 163 ARNLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDLAVARLLAD 220
Query: 394 DIILLSDGQIVYQGPRELVLE 414
++++ GQ+V G + VL+
Sbjct: 221 RLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 34/163 (20%)
Query: 869 LTALMGVSGAGKTTLMDVLS-------GRKTGG---YITGNITISGYPKKQETFARISGY 918
+TA++G SG GK+T + L+ KT G Y NI Y +E +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 919 CEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV--------ELKPLI 969
++ + PF ++Y+++ Y P++ K ++E++E ELK +
Sbjct: 111 FQKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL 161
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 162 HD-----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 65/257 (25%), Positives = 112/257 (43%), Gaps = 63/257 (24%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL---DSSLKVSGR-VTYNGHDMGEFV 223
LK ++ + G M LLGP +GK+TL L G L + + G + Y+ + E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 224 PERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+T + Q+ D+ + TV E +AF G+ E+ +R EA
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA--------- 121
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMMVGP 341
+KA+ EG E ++ +SGG++KRV G + + P
Sbjct: 122 --LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKP 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL------FDDI 395
+ + +DE ++GLD QI+ L ++ T +IS T+D+ D +
Sbjct: 157 EI-IVLDEPTSGLDPMGASQIMKLLYD-LNKEGITIIIS-------THDVDLVPVYADKV 207
Query: 396 ILLSDGQIVYQG-PREL 411
++SDG+I+ +G P+E+
Sbjct: 208 YVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-06
Identities = 62/250 (24%), Positives = 93/250 (37%), Gaps = 65/250 (26%)
Query: 177 PGR-MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG---HDM--GEFVP--ERTA 228
P R +T L GP SGKT+L+ +AG GR+ NG D G F+P +R
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI 288
Y+ Q TVR L + M
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYG----------------------------------MWKS 104
Query: 289 ATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-MMVGPALALFM 347
D + +LG+E D G +SGGE++RV G ++ P L L M
Sbjct: 105 MRAQ------FDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPEL-LLM 152
Query: 348 DEISTGLDSSTTFQIVNCLK---QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
DE LD +I+ L+ ++I ++ + E L D +++L +G++
Sbjct: 153 DEPLASLDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVK 208
Query: 405 YQGPRELVLE 414
GP E V
Sbjct: 209 ASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 75/287 (26%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGE 221
+LK +S ++ G + +++GP SGK+TLL L G + D SG +T +G D+G
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-----SGSITVDGEDVG- 67
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL---LTELARREN--EAGIK 276
I ++ R + V ++ L LT L EN A
Sbjct: 68 ------------DKKDILKL--RRKVGM------VFQQFNLFPHLTVL---ENVTLA--- 101
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
P +K EA L+ +GL AD +SGG+++RV
Sbjct: 102 P-------VKVKKLSKAEAREKALELLEKVGLADKADAYPA-----QLSGGQQQRVAIAR 149
Query: 337 -MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-F-- 392
+ + P + LF DE ++ LD ++++ +K G +I + T+++ F
Sbjct: 150 ALAMDPKVMLF-DEPTSALDPELVGEVLDVMKDLA--EEGMTMIIV------THEMGFAR 200
Query: 393 ---DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
D +I + G+I+ +GP E EFF++ PK + FL ++
Sbjct: 201 EVADRVIFMDQGKIIEEGPPE---EFFDN-----PKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 7e-06
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISGYPKKQ 909
+ LN +S G + ++G SGAGK+TL+ ++L +G I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 910 ETFAR--ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
T AR I + ++ S TV+ ++ LP E+D+ + +V EL+ L
Sbjct: 77 LTKARRQIGMIFQHFNLLSS-RTVFGNV------ALPLELDNTPKDEIKRKVTELLALVG 129
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
L P S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 130 LGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 12/193 (6%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISGYPKKQ 909
+L+ + G + ++G SG+GK+TL+ + L +G I + ++ PK
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 910 ETFARI-SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
E R +G Q P +T E++++ P V +++ ++ EL+ L
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKVGL 126
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
+ P S LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 127 AERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 1029 TGRTVVCTIHQPG 1041
G T+V H+ G
Sbjct: 185 EGMTMVIVTHEIG 197
|
Length = 240 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 154 YLGILPSRKK--HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGR 211
YL I RK+ T LKD+S +K G LLGP GKTTLL +AG L+ + +G
Sbjct: 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LE--RQTAGT 60
Query: 212 VTYNGHDMGEFVPER 226
+ G D+ P++
Sbjct: 61 IYQGGRDITRLPPQK 75
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 9e-06
Identities = 53/254 (20%), Positives = 98/254 (38%), Gaps = 44/254 (17%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHDMGE---- 221
+K+V+ ++ G + L+GP GKTT L A+ L +V+GR+ +G D+
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 222 -FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
R + Q N M+V + + + G+ R L+ E+A R D +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLM-EVAERSLRGAALWD-E 137
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
+ +K AT G+SGG+++R+ +
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE ++ LD ++T +I + + + T +I + + + D
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTD---LKKVTTIIIVTHNMHQAARVSDTTSFFLV 222
Query: 401 GQIVYQGPRELVLE 414
G +V GP + +
Sbjct: 223 GDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-06
Identities = 64/249 (25%), Positives = 98/249 (39%), Gaps = 43/249 (17%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV--SGRVTYNGHDMGEFVP 224
+L +++ IKPG ++GP SGK+TL KL L G+V +G D+ P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTL-----TKLLQRLYTPQHGQVLVDGVDLAIADP 526
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R R GV + +L + R+N A P +
Sbjct: 527 ----------------AWLR-------RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHV 563
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
+ A G + L +T VG E +SGG+R+R+ +VG
Sbjct: 564 IHAAKLAGAHDFIS--------ELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRI 614
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L DE ++ LD + I+ +++ I G VI + T D II+L GQI
Sbjct: 615 LIFDEATSALDYESEALIMRNMRE---ICRGRTVIIIAHRL-STVRACDRIIVLEKGQIA 670
Query: 405 YQGPRELVL 413
G E +L
Sbjct: 671 ESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1039
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 52/195 (26%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
++ +S + G LLGP +GK+T+ + G +G++T +G VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ Q DN E TVRE L V RY ++ RE EA I
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLL-------VFGRY---FGMSTREIEAVIPS--- 155
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L+ LE AD V D +SGG ++R+T ++
Sbjct: 156 ---------------------LLEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 341 PALALFMDEISTGLD 355
L +DE +TGLD
Sbjct: 190 DPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 51/224 (22%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+ +S + G + GP SGKTTLL LAG S ++GRV NG +
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG---LSPPLAGRVLLNGGPLDFQRD 69
Query: 225 E--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R Y+ ++V E L F S ++ LAR
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHA---DHSDEQVEEALAR-------------- 112
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+GL D + +S G+++RV +++
Sbjct: 113 -----------------------VGL-----NGFEDRPVAQLSAGQQRRVALARLLLSGR 144
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386
+DE +T LD + + + H G V++ Q
Sbjct: 145 PLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDLG 187
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 61/223 (27%), Positives = 85/223 (38%), Gaps = 50/223 (22%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
+L +VS I G M ++G SGK+TLL L G LD+ SG V +NG M +
Sbjct: 19 SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTP--TSGDVIFNGQPMSK 75
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA------GI 275
A E+ ++ L F + + LL + EN A
Sbjct: 76 LSSAAKA-----------ELRNQK-LGF------IYQFHHLLPDFTALENVAMPLLIGKK 117
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG 335
KP E N L +GLE A+ + +SGGER+RV
Sbjct: 118 KP---------------AEINSRALEMLAAVGLEHRANHRPSE-----LSGGERQRVAIA 157
Query: 336 EMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
+V P L L DE + LD+ I L ++ GTA
Sbjct: 158 RALVNNPRLVL-ADEPTGNLDARNADSIFQLL-GELNRLQGTA 198
|
Length = 233 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK----QETF 912
L+G+ RPG L G +GAGK+TLM +LSG G G I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQS 971
Q P ++V E++ + LP + + + ++ ++L +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 137 R----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 17/206 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L ++ + G ++G +G+GK+TL L+G R G + + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 915 ISGYCEQNDIHSPFV--TVYESLLYSAW-LRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
+ G QN + FV TV E L + L LPP E RK + E+ K +S
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKRVDRALAEIGLEKYRHRS 133
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1031
L G G + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 134 PKTLSGGQG------QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRG 1057
T+V H ++ D + +M RG
Sbjct: 188 TIVYITHN--LEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 19/165 (11%)
Query: 860 LSGAFRPGVLTALMGVSGAGKTTLMDVL--------SGRKTGGYITGNITISGYPKKQE- 910
+S F +TA++G SG GK+T++ + S R TG + + I Y + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI--YDRGVDP 80
Query: 911 -TFARISGYCEQNDIHSPFVTVYESLL--YSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+ R G Q P +++Y++++ Y R+ E + ++ V E+K
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
++S LS Q++RL IA + P +I MDEP S LD
Sbjct: 141 RLKS-----NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 28/116 (24%)
Query: 303 LKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA-----LFMDEISTGLDSS 357
L++LGL AD + +SGGER+RV ++ ALA L +DE ++ LD +
Sbjct: 82 LELLGLAHLADRPFNE-----LSGGERQRV-----LLARALAQEPPILLLDEPTSHLDIA 131
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQG 407
+++ L++ T V+ L +DL D +ILL DG+IV QG
Sbjct: 132 HQIELLELLRRLARERGKTVVMVL-------HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 57/274 (20%), Positives = 96/274 (35%), Gaps = 64/274 (23%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
K L +VS I+ G ++G SGK+TL LAG S SG + +G
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKP 70
Query: 219 MGEFVPERTAA----YISQH-DNHIG-EMTVRETLAFSARCQGVGSRYELLTELARRENE 272
+ + + Q + + TV L+ R G+ + + EL +
Sbjct: 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLD---Q 127
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332
G+ P + ++ G G+R+R+
Sbjct: 128 VGLPPS------------------FLDRRPHELSG-------------------GQRQRI 150
Query: 333 TTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI------SLLQPA 385
++ P L L +DE ++ LD S QI+N L + G + +L+
Sbjct: 151 AIARALIPEPKL-LILDEPTSALDVSVQAQILNLL-LELKKERGLTYLFISHDLALV--- 205
Query: 386 PETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
+ D I ++ +GQIV GP E +L
Sbjct: 206 ---EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 41/193 (21%), Positives = 70/193 (36%), Gaps = 43/193 (22%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-- 224
+L +V+ I G + L+GP GK+TLL + G L +G + N + + +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL-DMLPAA 75
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R + Q ++V + L F+ G+ ARR
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFALPATLKGN--------ARRNA------------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
+ L+ GL + +SGG+R RV ++ A
Sbjct: 115 --------------ANAALERSGL-----DGAFHQDPATLSGGQRARVALLRALLAQPKA 155
Query: 345 LFMDEISTGLDSS 357
L +DE + LD +
Sbjct: 156 LLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 23/101 (22%)
Query: 325 SGGERKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
SGG R+RV M+ ALA L DE +T LD + QI++ LK + GTA+I
Sbjct: 155 SGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLK-ELQREKGTALI 208
Query: 380 SLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
+ T+DL D + ++ G+IV +GP E + +
Sbjct: 209 LI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 62/268 (23%), Positives = 107/268 (39%), Gaps = 59/268 (22%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
FE + F Y P+R L ++ ++PG L+GP +GK+TL L D
Sbjct: 340 FEQVNFAY----PARPDQPA-LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ- 393
Query: 207 KVSGRVTYNGHDMGEFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
SGR+ +G D+ + P R + D + +V E + +
Sbjct: 394 --SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYG-------------- 437
Query: 265 ELARRENEAGIKPDP-DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
+PD D +V A A E + L DT +G+ +
Sbjct: 438 -----------RPDATDEEVEAAARAAHAHEF---------ISALPEGYDTYLGERGVT- 476
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI---- 379
+SGG+R+R+ ++ A L +DE ++ LD+ + Q+V + + T +I
Sbjct: 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESE-QLVQQALETLMKGRTTLIIAHRL 535
Query: 380 SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ + A D I+++ G+IV QG
Sbjct: 536 ATVLKA-------DRIVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 66/248 (26%), Positives = 98/248 (39%), Gaps = 66/248 (26%)
Query: 177 PGRMTLLLGPPASGKTTLL---LALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQ 233
G + LLGP +GKTTLL L L ++KV+G G +VP+R
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR------- 57
Query: 234 H----DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIA 289
H D I +V T+ S R +G RR A
Sbjct: 58 HEFAWDFPI---SVAHTV-MSGRTGHIG--------WLRRPCVADFAA------------ 93
Query: 290 TEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA----- 344
L+ +GL AD VG+ +SGG+R+RV +V ALA
Sbjct: 94 ---------VRDALRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRPSV 134
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE TGLD T + + +GTA++ + D ++LL +G+++
Sbjct: 135 LLLDEPFTGLDMPTQELLTELFIELA--GAGTAILMTTHDLAQAMATCDRVVLL-NGRVI 191
Query: 405 YQG-PREL 411
G P++L
Sbjct: 192 ADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKT--GGYITGN-ITISGYPKKQETFARISGYCEQND 923
G + A+MG SGAGK+TL+++++G G I N + +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVD-SETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982
+TV +++ L L P + + ++ + + + V + + L P LS
Sbjct: 82 F--AHLTVRQNI----GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRL---PE--QLS 130
Query: 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1040
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 2e-05
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 13/189 (6%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSG-RKTGGYITGNITISGYPK 907
+L+ +S F +T+LMG +G+GKTT + D +SG R +G + G +I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
E F R G Q P + L +L P E R + + E+
Sbjct: 96 VLE-FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLWDA 152
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
+ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1028 DTGRTVVCT 1036
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 55/253 (21%)
Query: 828 SLTFDEV--VYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD 885
++ FD V Y P E + ++ ++ F G A++G +G+GK+TL+
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLIQ 51
Query: 886 VLSG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPFVTVY---ESLLYSA 939
++ + T G +T +ITI+ K ++ + R + V+ ES L+
Sbjct: 52 NINALLKPTTGTVTVDDITITH--KTKDKYIR--------PVRKRIGMVFQFPESQLFED 101
Query: 940 WLRLPPEVDSETRKMFIEEV--------MEL------VELKPLIQSLVGLPGVSGLSTEQ 985
+ + KM ++EV M+L + P +S Q
Sbjct: 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPF-----------QMSGGQ 150
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPGIDI 1044
+++ I L NP II +DEPT+GLD ++ VMR +++ D +T++ H ++
Sbjct: 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EV 209
Query: 1045 FDAFDELFLMKRG 1057
DE+ +MK G
Sbjct: 210 ARYADEVIVMKEG 222
|
Length = 286 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 65/282 (23%), Positives = 115/282 (40%), Gaps = 46/282 (16%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTL---LLALAGKLDSSLKVSGRVTYNGH 217
R LT+L ++ + G L+GP SGK+T+ L+ L + ++V G Y+
Sbjct: 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMP 68
Query: 218 D-MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK 276
G VP ++ Q N IG M + F + + EA
Sbjct: 69 GRNGPLVPA-DEKHLRQMRNKIG-MVFQSFNLFPHKT------------VLDNVTEA--- 111
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
V + +A E + L ++GL AD M +SGG+++RV
Sbjct: 112 -----PVLVLGMARAEAEKRAME--LLDMVGLADKADHMPAQ-----LSGGQQQRVAIAR 159
Query: 337 -MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
+ + P + LF DE+++ LD +++N +++ + T ++ + + D +
Sbjct: 160 ALAMRPKVMLF-DEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRV 217
Query: 396 ILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
G+IV QG P E+ F+ PK + +FL +V
Sbjct: 218 CFFDKGRIVEQGKPDEI---------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 28/206 (13%)
Query: 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG--------- 904
L +L+GL+ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 905 ----YPKKQETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFI 956
P ++ ++ G Q+ P TV +++ + L L ++E R
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR---- 126
Query: 957 EEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016
MEL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 127 --AMELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 1017 AIVMRTVRN-TVDTGRTVVCTIHQPG 1041
V+ +R + T++ H+ G
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHEMG 208
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 64/221 (28%), Positives = 92/221 (41%), Gaps = 33/221 (14%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
ILKD+S PG +LG +GK+TLL +AG +D +NG P
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKE--------FNGEAR--PAPG 67
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK-PDPDIDVY 284
Y+ Q TVRE + +GV + L NE K +PD D
Sbjct: 68 IKVGYLPQEPQLDPTKTVRENVE-----EGVAEIKDALDRF----NEISAKFAEPDAD-- 116
Query: 285 MKAIATEG---QEANVITDYYLKVLGLEVCADTM---VGDEMIRGISGGERKRVTTGEMM 338
M A+ E QE D + LE+ D + D + +SGGER+RV ++
Sbjct: 117 MDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLL 176
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
+ L +DE + LD+ + V L+QH+ GT V
Sbjct: 177 LSKPDMLLLDEPTNHLDAES----VAWLEQHLQEYPGTVVA 213
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 14/170 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYIT-GNITISGYPKK 908
L+ +S F +TAL+G SG GK+T + D++ G + G I I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 909 QETFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
R G Q +PF +++E++ Y LR+ D +E + L
Sbjct: 82 VVELRRRVGMVFQKP--NPFPKSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWD 137
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
++ + + GLS Q++RL IA L P ++ MDEP S LD A
Sbjct: 138 EVKDRLHESAL-GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1039
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 59/252 (23%)
Query: 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGE-FVPERT 227
D++ +K G + L+G SGK+ LA+ G L L + SG + +G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKA 287
A I Q N T+ A E L L + +A +A
Sbjct: 64 IATIMQ--NPRTAFNPLFTMGNHAI--------ETLRSLGKLSKQA------------RA 101
Query: 288 IATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA--- 344
+ E EA +GL + + + +SGG +R +M+ AL
Sbjct: 102 LILEALEA----------VGLPDPEEVL--KKYPFQLSGGMLQR-----VMIALALLLEP 144
Query: 345 --LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL------FDDII 396
L DE +T LD +++ L++ + GT ++ + T+DL D++
Sbjct: 145 PFLIADEPTTDLDVVNQARVLKLLRELRQLF-GTGILLI------THDLGVVARIADEVA 197
Query: 397 LLSDGQIVYQGP 408
++ DG+IV +G
Sbjct: 198 VMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 27/224 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNI-------TISGYPK 907
++ +S + G + ++G SGAGKTTL +++G T G + + T G P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PD 358
Query: 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+ R G Q P TV ++L + L LP E+ K I M + +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
+ L P LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 1028 -----DTGRTVVCTIHQPGID-IFDAFDELFLMKRGGQEIYVGP 1065
+ +T + H +D + D D LM R G+ + +G
Sbjct: 471 LKAREEMEQTFIIVSHD--MDFVLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP-KKQ-E 910
+L +GLS G L + G +GAGKT+L+ +L+G R G + G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 911 TFARISGYC-EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ + Y Q I +T E+L + RL D E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----------------LW 111
Query: 970 QSL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
++L VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 1023 VRNTVDTGRTVVCTIHQP 1040
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 2e-05
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
+L+GLS P ++G +GAGK+++++ L + G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 916 SGYCEQNDIHSPFVTVYES-LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-QSLV 973
D+ + +S +L+S +R + SE + E +E +K +I ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 974 GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 26/187 (13%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDI 924
G LT ++G G GK++L+ + G + G + + P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 925 HSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVG 974
P++ TV E++ + S K + V + L+P I Q+ +G
Sbjct: 86 QKPWLLNATVEENITF----------GSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG 135
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRT 1032
G++ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT
Sbjct: 136 ERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRT 194
Query: 1033 VVCTIHQ 1039
+V H+
Sbjct: 195 LVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 63/264 (23%), Positives = 102/264 (38%), Gaps = 76/264 (28%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK +S I G T LLGP +GK+TLLL L G L GRV MG V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG---IYLPQRGRVKV----MGREVNAEN 73
Query: 228 AAYISQH--------DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
++ D+ + TV + +AF G+ E+ RR EA
Sbjct: 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA------ 122
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMM 338
LK + + D+ +S G++KRV G +
Sbjct: 123 -----------------------LKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGVLA 154
Query: 339 VGPALALFMDEISTGLDSS---TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL---- 391
+ P + + +DE LD T +I++ L H T +++ T+D+
Sbjct: 155 MDPDV-IVLDEPMAYLDPRGQETLMEILDRL----HNQGKTVIVA-------THDVDLAA 202
Query: 392 --FDDIILLSDGQIVYQGPRELVL 413
D +I+L +G+++ +G + L+
Sbjct: 203 EWADQVIVLKEGRVLAEGDKSLLT 226
|
Length = 274 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 16/210 (7%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTT----LMDVLSGRKTGGYITGNITISGYPKKQET 911
L+ L+ + + G + AL+G SG+GK+ ++ +L T +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 912 F-ARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
R QN + P T+ + + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1027
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G ++ H G+ + DE+ +M G
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 57/219 (26%), Positives = 89/219 (40%), Gaps = 39/219 (17%)
Query: 868 VLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISG---YPKKQETFA--RISGYC 919
+ ALMG SG GK+TL+ + L + G + + G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 920 EQNDIHSPFVTVYES----LLYSAWLRLPPEVDSETR-----KMFIEEVMELVELKPLIQ 970
Q P +T+Y++ + + ++ E+D +EV + + P
Sbjct: 91 FQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYP--- 147
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
S LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 148 --------SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKE 198
Query: 1031 RTVVCTIHQPG----IDIFDAFDELFLMKRGGQEIYVGP 1065
T+V H P + + AF L+L G+ I VGP
Sbjct: 199 YTIVLVTHSPAQAARVSDYVAF--LYL----GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 54/232 (23%)
Query: 834 VVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG 893
V Y+ D+P +L +S + G ++G +GAGK+TL +L+ +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 894 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL--------LYSAWLRLPP 945
G I I G + P + SL L+S +R
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005
+ E I + + E G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
E T+ +D A++ +T+R T T++ H+ I D +D++ +M G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISGYP--KKQET 911
L ++ + +TA++G SG GK+T + L+ +TG + +G K +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 912 FARIS---GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+ G Q +PF ++++++ Y R+ + + + +E+ ++ V L
Sbjct: 88 LVELRKNIGMVFQKG--NPFPQSIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWD 143
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
++ + + LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 144 EVKDRLHTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 33/162 (20%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
+L+ +S +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 914 RISGYCEQN---DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
RI GY Q D P L + +LRL P +K I ++ V+ LI
Sbjct: 68 RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQAGHLID 115
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 116 A----P-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISG 917
+S R G A++G +G+GK+TL +L+G T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 918 -YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976
+ + N +P + + + LRL +++ E R+ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 3e-05
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005
EV ++K+ I + + + K ++LVG S LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVSALPDK--YETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 1006 EPTSGLDARAAAIVMRTVRN 1025
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 18/180 (10%)
Query: 872 LMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY---------PKKQETFARISGYCEQN 922
L+G SGAGK++L+ VL+ + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 923 DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982
P +TV ++L+ + P V ++ + +L+E L P LS
Sbjct: 91 YNLWPHLTVQQNLIEA-----PCRVLGLSKDQALARAEKLLERLRLKPYADRFP--LHLS 143
Query: 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V H+ +
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203
|
Length = 242 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 54/237 (22%), Positives = 93/237 (39%), Gaps = 46/237 (19%)
Query: 181 TLLLGPPASGKTTLLLALAG--KLDSS-LKVSGRVTYNGHDMGEFVPERTA-AYISQHDN 236
T + G SGKTTL+ +AG + D + ++GR ++ PE+ Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEAN 296
++VR L RY G+K E
Sbjct: 86 LFPHLSVRGNL-----------RY-------------GMK------------RARPSERR 109
Query: 297 VITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + +++LG+ + G +SGGE++RV G ++ L MDE LD
Sbjct: 110 ISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 357 STTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
++I+ L + +H G ++ + E L D +++L DG++ GP V
Sbjct: 165 PRKYEILPYL-ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 60/251 (23%), Positives = 100/251 (39%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+L +S G++T L+G SGK+TLL L S G + + + + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R AY+ Q MTVRE +A +G RY L R
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVA-------IG-RYPWHGALGRF------------- 120
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
G + + ++GL+ A +V +SGGER+R ++ +
Sbjct: 121 ---------GAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDS 166
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD + ++ L + G VI++L D ++ L G+
Sbjct: 167 RCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225
Query: 403 IVYQG-PRELV 412
++ QG P EL+
Sbjct: 226 MIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 60/247 (24%), Positives = 96/247 (38%), Gaps = 51/247 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
IL +S I G+ ++G +GK+T+L L D + SG +T +G D+ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDI--RDVTQ 332
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ + IG + L + T +
Sbjct: 333 QSLRRA-----IGIVPQDTVLFNDTIAYNIKYGRPDATAEE-----------------VG 370
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG--ISGGERKRVTTGEMMVGPALA 344
A A Q + I L DT VG+ RG +SGGE++RV ++
Sbjct: 371 AAAEAAQIHDFIQS-------LPEGYDTGVGE---RGLKLSGGEKQRVAIARTILKNPPI 420
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----SLLQPAPETYDLFDDIILLSD 400
L +DE ++ LD+ T I L++ V T VI S + A D+II+L +
Sbjct: 421 LILDEATSALDTHTEQAIQAALRE-VSAGRTTLVIAHRLSTIIDA-------DEIIVLDN 472
Query: 401 GQIVYQG 407
G+IV +G
Sbjct: 473 GRIVERG 479
|
Length = 497 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 57/258 (22%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+L V ++ G + L+GP +GKTTLL A+ G L + +G V G D V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDD----VEA 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID--V 283
+A S+ + + T +L+F + V E+ R + + + D
Sbjct: 70 LSARAASRRVASVPQDT---SLSFEFDVRQV-------VEMGRTPHRSRFDTWTETDRAA 119
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+A+ G D + +SGGER+RV ++ AL
Sbjct: 120 VERAMERTGVAQFA--------------------DRPVTSLSGGERQRV-----LLARAL 154
Query: 344 A-----LFMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
A L +DE + LD T ++V L ++ G ++ + D++
Sbjct: 155 AQATPVLLLDEPTASLDINHQVRTLELVRRL-----VDDGKTAVAAIHDLDLAARYCDEL 209
Query: 396 ILLSDGQIVYQGPRELVL 413
+LL+DG++ GP VL
Sbjct: 210 VLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-05
Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 27/225 (12%)
Query: 823 PFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTT 882
P EPH +V+ + + V+ ++ +S + R G + + G+ GAG+T
Sbjct: 247 PHEPH--EIGDVILEA---RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTE 301
Query: 883 LMDVLSGRKTGGYITGNITISGYP-----KKQETFARISGYCEQNDIHS--PFVTVYESL 935
L+ L G G + GN+ I+G P Q A I+ E H P + V +++
Sbjct: 302 LVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360
Query: 936 LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV------GLPGVSGLSTEQRKRL 989
S + S KM I+ EL + IQ L LP + LS +++
Sbjct: 361 TLSV-------LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLSGGNQQKA 412
Query: 990 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
+A L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 4e-05
Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 47/244 (19%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
+ DVS K G+ ++GP +GKTTL+ L D + G++ +G D+
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDI-------- 399
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN-EAGIKPDPDIDVYMK 286
N + ++R+++A + G+ +R + REN G + D +VY
Sbjct: 400 --------NTVTRESLRKSIATVFQDAGLFNR-------SIRENIRLGREGATDEEVY-- 442
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
E +A D+ LK DT+VG+ R +SGGER+R+ ++ A L
Sbjct: 443 ----EAAKAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPILV 494
Query: 347 MDEISTGLDSSTTFQI---VNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
+DE ++ LD T ++ ++ L++ N T +I+ DL ++ L G++
Sbjct: 495 LDEATSALDVETEARVKNAIDALRK----NRTTFIIAHRLSTVRNADL---VLFLDQGRL 547
Query: 404 VYQG 407
+ +G
Sbjct: 548 IEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 28/160 (17%)
Query: 869 LTALMGVSGAGKTTLM-------DVLSGRKTGGYIT--------GNITISGYPKKQETFA 913
+TAL+G SG GK+T + D++ G + G+I + + KK
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKK----- 85
Query: 914 RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
G Q +PF ++++++ Y LR+ E D + + +EE ++ L ++
Sbjct: 86 --VGMVFQKP--NPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWDEVKDK 139
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+ + GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 140 LDKSAL-GLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 34/227 (14%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKK 908
+ L +S G A++G +G+GK+T+ +L+G + G I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITIS 74
Query: 909 QETFARIS---GYCEQN-DIHSPFV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 962
+E I G QN D + F+ TV + + + + V + K I+++ +
Sbjct: 75 KENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKK 129
Query: 963 VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--- 1019
V ++ + LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 130 VGMEDYLDK-----EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKI 184
Query: 1020 MRTVRNTVDTGRTVVCTIHQPGIDIFDAF--DELFLMKRGGQEIYVG 1064
M +R T +T++ H D+ +A D++ + G+ I G
Sbjct: 185 MVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 55/258 (21%), Positives = 98/258 (37%), Gaps = 61/258 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEFV 223
++ VS +K G + LLGP +GKTT + G K D SG++ +G D+ +
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD-----SGKILLDGQDITKLP 68
Query: 224 PERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ A Y+ Q + ++TV E + +G+ S+ E +L
Sbjct: 69 MHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGL-SKKEREEKL------------- 114
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
+ L+ + + +SGGER+RV +
Sbjct: 115 --------------------EELLEEFHITHLRKSKAS-----SLSGGERRRVEIARALA 149
Query: 340 -GPALALFMDEISTGLDSSTTF---QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
P L +DE G+D +I+ LK + G V+ ET + D
Sbjct: 150 TNPKF-LLLDEPFAGVDPIAVQDIQKIIKILK-----DRGIGVLITDHNVRETLSITDRA 203
Query: 396 ILLSDGQIVYQG-PRELV 412
++ +G+++ +G P E+
Sbjct: 204 YIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHDM-----G 220
LK+++ I ++T L+GP GK+TLL +L L +++ G+V ++G D+
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
R + Q N M++ + +A+ R G+ + EL
Sbjct: 77 VVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKEL 117
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 31/160 (19%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG-----YPKKQETFARISGYCEQ 921
G TA++G +G GK+TL+ LS T G++ + G Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE--VARRIGLLAQ 88
Query: 922 NDIHSPFVTVYESL---------LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
N +TV E + L++ W + + ++ T+ M + L + QS
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLAD-----QS- 140
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 -----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-05
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 26/155 (16%)
Query: 870 TALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 926
T ++G+SG+GK+TL +L G +G I ++G+ K T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 927 PFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-VGL-----PG 977
P++ ++ E+LL A V + I E+ E+K I+++ +G
Sbjct: 557 PYIFSGSILENLLLGA----KENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSEE 608
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-05
Identities = 66/222 (29%), Positives = 100/222 (45%), Gaps = 41/222 (18%)
Query: 860 LSGA---FRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG---YITGNITISGYPKKQET 911
LSGA PG + AL+G +GAGK+T+M VL+G + G Y+ +T +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
Query: 912 FARISGYCEQNDIHS-----PFVTVYESLLY-----SAWLRLPPEVDSETRKMFIEEVME 961
A I IH P +T+ E++ + + R+ + +KM+ E
Sbjct: 79 -AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 962 LVELKPLIQS--LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
L L S LVG LS +++ + IA L +I MDEPT L +
Sbjct: 126 LARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180
Query: 1020 MRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061
R +R GR +V H+ +IF+ D++ + R GQ I
Sbjct: 181 FRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 64/219 (29%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L L + VL + GVSG+GK+TL+ G Y +G + + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPKF------- 57
Query: 917 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK----PLIQSL 972
S + +FI+++ L+++ L Q L
Sbjct: 58 --------------------------------SRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1031 RTVVCTIHQPGIDIFDAFDELFLM-----KRGGQEIYVG 1064
TV+ H D+ + D + K GG+ ++ G
Sbjct: 140 NTVILIEHNL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 67/273 (24%), Positives = 115/273 (42%), Gaps = 55/273 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
ILK ++ I G + ++GP SGK+TL +AG + + G + + G + + PE
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLEPEE 80
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELA---RRENEAGIKPDPDIDV 283
A H+G LAF + G LA +R+ + + DP ++
Sbjct: 81 RA--------HLGIF-----LAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDP-LEF 126
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM-MVGPA 342
+I + LK++G++ + + + G SGGE+KR +M ++
Sbjct: 127 L-----------EIINE-KLKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSE 171
Query: 343 LALFMDEISTGLDSSTTFQI---VNCLKQHVHINSGTAVI------SLLQPAPETYDLFD 393
LA+ +DE +GLD I +N L S ++I LL Y D
Sbjct: 172 LAI-LDETDSGLDIDALKIIAEGINKLM-----TSENSIILITHYQRLLD-----YIKPD 220
Query: 394 DIILLSDGQIVYQGPRELVLEFFESMGFKCPKR 426
+ ++ +G+I+ G EL E E G+ K+
Sbjct: 221 YVHVMQNGKIIKTGDAELAKE-LEKKGYDWLKQ 252
|
Length = 252 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 52/208 (25%), Positives = 81/208 (38%), Gaps = 34/208 (16%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVL-------SGR---KTGGYITGNITI 902
+L +L +S G AL G SGAGK+TL+ L SGR + G
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 903 SG----YPKKQETFARISGYCEQNDIHSPFVT----VYESLLYSAWLRLPPEVDSETRKM 954
S +++ GY Q P V+ V E LL P E
Sbjct: 80 SPREVLEVRRKTI-----GYVSQFLRVIPRVSALEVVAEPLLERGV---PREAARA---- 127
Query: 955 FIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
EL+ + + L LP + S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 128 ---RARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 1015 AAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
+V+ + G ++ H +
Sbjct: 184 NRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 1154 TQFMACLWKQHWSYWRNPQYT-AVRFFFTAFIAVLLGSLFWDMGS 1197
TQ A L ++ WR+P R +A++ G++F ++ +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT 45
|
Length = 210 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 6e-05
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
R +SGGE++RV + DE + LD T + N L++ V + + V++
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT- 225
Query: 382 LQPAPETY-DLFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEVTSR 439
PE DL D I L +G+I +G P E+V F E G +++ + + +
Sbjct: 226 -SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--GVSEVEKECEVEVGEPIIKV 282
Query: 440 KDQKQYW 446
++ + +
Sbjct: 283 RNVSKRY 289
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 50/162 (30%)
Query: 192 TTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA----AYISQHDNHIGEMTVRETL 247
+TLL + G L SG + +G D + + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQ---PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
F R + A E L+ +G
Sbjct: 58 FFGLR-----------DKEADARAEE----------------------------ALERVG 78
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDE 349
L D + SGG+++RV ++ L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHDM 219
L VS P +T L+GP SGK+TLL ++ L+ + ++G + YNGH++
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI 74
|
Length = 252 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE--RTAAYIS 232
+ G + + GP +GKT+LL LAG +G V + G + E + Y+
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQGEPIRRQRDEYHQDLLYLG 80
Query: 233 QHDNHI-GEMTVRETLAFSARCQGVGSRYELLTELAR 268
H I E+T E L F R G G L LA+
Sbjct: 81 -HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 8e-05
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 30/213 (14%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ 909
K+ L+ +S G + L+G +GAGKTTL+ L G R T G I I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-L 968
++ E + S +TV E+L + R F E + + EL P L
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF--------AERDQFQERIKWVYELFPRL 127
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
+ + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 128 HERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 1029 TGRTVVCTIHQPGIDIF----DAFDELFLMKRG 1057
R + G+ IF +A L L RG
Sbjct: 182 QLR-------EQGMTIFLVEQNANQALKLADRG 207
|
Length = 237 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 8e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
S LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1039 QPGI 1042
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 9e-05
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 44/183 (24%)
Query: 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE--RTAAYIS 232
++PG LLG +GKTT L G D+++ SG T G + + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG--DTTV-TSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEG 292
Q D +T RE L AR +GV +
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPA---------------------------------- 2044
Query: 293 QEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEIST 352
+E + ++ ++ LGL + AD + G SGG +++++T ++G + +DE +T
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 353 GLD 355
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 9e-05
Identities = 65/252 (25%), Positives = 101/252 (40%), Gaps = 62/252 (24%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+LK +S IK G LLG GK+TLL L D G + NG + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADY---- 407
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL-TELARRENEAGIKPDPDIDVYM 285
E +R+ ++ V R L L R+N P+
Sbjct: 408 ------------SEAALRQAISV------VSQRVHLFSATL--RDNLLLAAPN------- 440
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVG-----DEMIRGISGGERKRVTTGEMMVG 340
A++ V L+ +GLE + G E R +SGGE++R+ ++
Sbjct: 441 ---ASDEALIEV-----LQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH 492
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-----FDDI 395
A L +DE + GLD+ T QI+ L +H V+ + T+ L FD I
Sbjct: 493 DAPLLLLDEPTEGLDAETERQILELLAEHA---QNKTVLMI------THRLTGLEQFDRI 543
Query: 396 ILLSDGQIVYQG 407
++ +GQI+ QG
Sbjct: 544 CVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 50/233 (21%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK V+ I+ G L+G GK+TLL ++G + SG V G + E P+R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG---LAQPTSGGVILEGKQITEPGPDRM 57
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKA 287
+ Q+ + + +TVRE +A + +L +L++ E A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 288 IATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFM 347
I + ++ ++GL AD G +SGG ++RV + L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 348 DEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
DE LD+ T + L Q + T ++ T+D+ D+ +LLSD
Sbjct: 139 DEPFGALDALTRGNLQEELMQIWEEHRVTVLMV-------THDV-DEALLLSD 183
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 17/175 (9%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 925
G + G +GAGKTTL+ VL+G +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 926 SPFVTVYESLLYSAWL--RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983
++ E+L + L R ++ + +V L +L V LS
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGSA--------LAIVGLAGYEDTL-----VRQLSA 140
Query: 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+LK++S +K G LLG SGK+TLL L G L G +T +G
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVP 65
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 9e-05
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 869 LTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITISGYPKKQETFA----RISGYCEQND 923
+TAL+G SG GK+T + + I G + I G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 924 IHSPFV-TVYESLLYSAWLR-LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981
+ FV ++YE++ Y+ L + D E + + + ++ V L ++ + ++ L
Sbjct: 90 V---FVKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVKDKLKQNALA-L 143
Query: 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
S Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 144 SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 9e-05
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L G++ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 914 RIS-GYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R G Q+ H + TVY+++ +P + + V ++ L+
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDNV------AIPLIIAGASGDDIRRRVSAALDKVGLLD 129
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
P LS +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 130 KAKNFP--IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 1031 RTVVCTIHQPGI 1042
TV+ H G+
Sbjct: 188 VTVLMATHDIGL 199
|
Length = 222 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 62/269 (23%), Positives = 110/269 (40%), Gaps = 80/269 (29%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK ++ IK G +T +LG +GK+TL L G L S SGR+ ++G
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDG----------- 67
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKA 287
+ + +S + L +L RE+ + DPD ++
Sbjct: 68 -----------------KPIDYSRKG---------LMKL--RESVGMVFQDPDNQLF--- 96
Query: 288 IATEGQEANVITDYYLKVLGLEVCADTM---VGDEMIR-GI-----------SGGERKRV 332
A+V D + L++ D + V + + R GI S G++KRV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL- 391
++V L +DE + GLD +I+ L + T +I+ T+D+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDID 203
Query: 392 -----FDDIILLSDGQIVYQG-PRELVLE 414
D++ ++ +G+++ QG P+E+ E
Sbjct: 204 IVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
Length = 283 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE- 225
+L++VS I+PG ++GP SGK+TL + G L SGRV +G D+ ++ P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNE 73
Query: 226 --RTAAYISQHDN 236
Y+ Q D
Sbjct: 74 LGDHVGYLPQDDE 86
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 16/151 (10%)
Query: 874 GVSGAGKTTLMDVLSGRK---TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 930
G SG GK+TL+ +++G + +G G ++ P + R G Q+ P ++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLT 990
V E++ S L+L E + +V E+++L L+ P LS QR+R+
Sbjct: 92 VAENM--SFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRK---P--KALSGGQRQRVA 143
Query: 991 IAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
I LVA PS+ +DEP S LDA A + MR
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 25/169 (14%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETF 912
+++ L+ + G + L+G SG GKTT++ +++G + G I I G + T
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTH 72
Query: 913 ARISGYCEQNDI----HS----PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
I +Q DI S P +++ E++ Y L++ V E RK ++E +ELV+
Sbjct: 73 RSI----QQRDICMVFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVD 125
Query: 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
L V +S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 126 LAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 1e-04
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGG--YITGNITISGYP 906
+L+ L+ + +TA +G SG GK+T + D++ G G Y G T S
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 907 KKQETFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
E RI ++ +PF +++++++ Y R D + + +E+ ++ L
Sbjct: 157 SSLELRTRIGMVFQKP---TPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAAL 211
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
++ + G + LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 212 WDEVKDDLDKAG-NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 50/215 (23%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFARISGYCEQND 923
G TA +G +G+GK+T+M +L+G G + I+ K + D
Sbjct: 33 GSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK-------------D 79
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP------------LIQS 971
I V L++ PE ++F E V++ V P L +
Sbjct: 80 IKQIRKKV--GLVFQF-----PE-----SQLFEETVLKDVAFGPQNFGVSQEEAEALARE 127
Query: 972 LVGLPGVSG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
+ L G+S LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 128 KLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL 187
Query: 1023 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ +G T+V H D+ + D ++++++G
Sbjct: 188 FKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 22/180 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISGYPKKQE--- 910
L G+S +TAL+G SG GK+T + L+ R I G++ + G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 911 --TFARISGYCEQNDIHSPF-VTVYESLLYSA----------WLRLPPEVDSETRKMFIE 957
+ G Q+ +PF ++ E++ Y RL D + +E
Sbjct: 121 LVELRKRVGMVFQSP--NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVE 178
Query: 958 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
+ L + + GLS Q++RL IA L +P +I MDEP S LD A +
Sbjct: 179 RSLRQAALWDEVNDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 38/151 (25%), Positives = 52/151 (34%), Gaps = 59/151 (39%)
Query: 871 ALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 928
L+G SG GK+TL ++ G T G I G DI
Sbjct: 43 GLVGESGCGKSTLGRLILGLEEPTSG----EILFEG-----------------KDIT--- 78
Query: 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI------QSLVGLPGVSGLS 982
++ E R+ + E++E V L + LS
Sbjct: 79 -----------------KLSKEERRERVLELLEKVGLPEEFLYRYPHE----------LS 111
Query: 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
QR+R+ IA L NP +I DEP S LD
Sbjct: 112 GGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 27/217 (12%)
Query: 832 DEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG-R 890
EVV V+ L + + +S R G + + GV+G G++ L++ +SG R
Sbjct: 254 GEVVLEVE-----DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR 308
Query: 891 KTGGYITGNITISGYPKKQETFARIS-----GYCEQNDIH---SPFVTVYESLLYSAWLR 942
K +G I ++G R Y ++ +++ E+L+
Sbjct: 309 KP---ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG-RHD 364
Query: 943 LPPE-----VDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVA 997
P +D + F E++E +++ S LS +++L +A EL
Sbjct: 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRA--PSP--DAPARSLSGGNQQKLILARELAR 420
Query: 998 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
P ++ +PT GLD A + + D G+ V+
Sbjct: 421 RPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 64/276 (23%), Positives = 107/276 (38%), Gaps = 48/276 (17%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD---SSLKVSGRVTYNGHDMGEFVP 224
L D+ +K G T L+G SGK+TLL L G L + V V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 225 ERTAAYISQH--DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R + ++ + E TV + +AF + G+
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK------------------------ 117
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
++A I L+++GL ++ +SGG+ +RV ++
Sbjct: 118 ----------EKAEKIAAEKLEMVGLA----DEFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + GLD +++ L + +H SG V+ + + D D + LL G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQ-LFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 403 IVYQG-PRELVLE--FFESMGFKCPKRKGVADFLQE 435
I+ G P ++ E F ++ PK AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 149 EDIFN----YLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL-- 202
ED+FN YL I ILKD++ I + ++GP SGK+TLL L +
Sbjct: 8 EDVFNISRLYLYI-----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI 62
Query: 203 -DSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGS 258
DS +KV G+V Y G D+ + + + Q N +++ + +A+ + G+
Sbjct: 63 YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKE 122
Query: 259 RYEL 262
+ E+
Sbjct: 123 KREI 126
|
Length = 257 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 38/240 (15%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG----RKTGGYITGNITIS--- 903
+ K VL N +S G + ++G SGAGK+ LM VL G T G I ++ +
Sbjct: 11 DGKEVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKC 69
Query: 904 GYPKKQETFARISGYC------EQNDIHSPFVTVYESL-------------LYSA----- 939
GY ++ C E+ D + + + LY
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 940 -WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVAN 998
L E+ E ++ + ++L+E+ L + + LS +++R+ +A +L
Sbjct: 130 NVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKE 186
Query: 999 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
P + DEPT LD + A +V + V +G ++V T H P + I D D+ ++ G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 62/251 (24%), Positives = 95/251 (37%), Gaps = 65/251 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER- 226
L +VS I G + L+G +GKTTLL L G ++ SGR+ ++G D+ ++ +
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKI 77
Query: 227 ---TAAYISQHDNHIGEMTVRETLA----FSARCQ---GVGSRYELLTELA-RRENEAGI 275
A + + MTV E LA F+ R Q + YEL L RR AG
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAG- 136
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG 335
TM SGGE++ + G
Sbjct: 137 --------------------------------------TM---------SGGEQQMLAIG 149
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
++ L +DE S GL QI + ++Q G + + Q A + L D
Sbjct: 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE--QGMTIFLVEQNANQALKLADRG 207
Query: 396 ILLSDGQIVYQ 406
+L +G +V +
Sbjct: 208 YVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 34/193 (17%), Positives = 60/193 (31%), Gaps = 55/193 (28%)
Query: 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQND 923
F G LT + G +G+GK+T++D + G G A +
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAI------GLALG----------GAQSATRRRSGVKAG 61
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983
V+ LI + + L G G
Sbjct: 62 CIVAAVSAE-----------------------------------LIFTRLQLSG--GEKE 84
Query: 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGID 1043
L +A+ + + +DE GLD R + + + G V+ H P +
Sbjct: 85 LSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--E 142
Query: 1044 IFDAFDELFLMKR 1056
+ + D+L +K+
Sbjct: 143 LAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 20/162 (12%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR 914
+L G+ G + AL+G +GAGK+TLM +++G +G + I G P + T A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 915 ISGY----CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL-VELKPLI 969
Q + P ++V E++L+ LP S +KM + + L +L
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASM-QKM-KQLLAALGCQLDLDS 136
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+ L R+ + I L+ + I+ +DEPT+ L
Sbjct: 137 SA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YP 906
L +S +TA +G SG GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 907 KKQE--TFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
KK + R G Q +PF ++YE+++Y LRL + +E +
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRVLDEAVERSLRGA 152
Query: 964 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
L ++ + GLS Q++RL IA + P ++ +DEPTS LD + +
Sbjct: 153 ALWDEVKDRLHENAF-GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 133 ASKALPSFTKFYTTVFEDIFN-YLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGK 191
SK + + ++ + + G + LKD+S I G ++G +GK
Sbjct: 9 VSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFW--ALKDISFEIYKGERVGIIGHNGAGK 66
Query: 192 TTLLLALAG--KLDS-SLKVSGRVTYNGHDMGE-FVPERTAAY 230
+TLL +AG K S +KV+G+V ++G F PE T
Sbjct: 67 STLLKLIAGIYKPTSGKVKVTGKVAP-LIELGAGFDPELTGRE 108
|
Length = 249 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 40/220 (18%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGGYITGNITISGYPKKQETFAR 914
LNG++ + G L A++G G GK++L+ L K G++ +++ P++ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ----AW 709
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-- 972
I QND ++ E++L+ L + ++V+E L P ++ L
Sbjct: 710 I-----QND------SLRENILFGKALNEK----------YYQQVLEACALLPDLEILPS 748
Query: 973 -----VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT- 1026
+G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 749 GDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPE 807
Query: 1027 -VDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
V +T + H GI D + +M GG+ +G
Sbjct: 808 GVLKNKTRILVTH--GISYLPQVDVIIVMS-GGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 65/280 (23%), Positives = 104/280 (37%), Gaps = 70/280 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
+ +++ I G +L+GP SGKTT + + ++ + SG + +G D+ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 226 -RTAAYISQHDNHIG---EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
R Y+ Q IG MTV E +A + + A
Sbjct: 74 RRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKWPK--------EKIRERA-------- 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
D L ++GL+ D +SGG+++RV V
Sbjct: 115 ------------------DELLALVGLD---PAEFADRYPHELSGGQQQRVG-----VAR 148
Query: 342 ALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396
ALA L MDE LD T Q+ K + G ++ + E + L D I
Sbjct: 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFK-RLQQELGKTIVFVTHDIDEAFRLADRIA 207
Query: 397 LLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQE 435
++ +G+IV G P E+ + P VA+F+
Sbjct: 208 IMKNGEIVQVGTPDEI---------LRSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 46/192 (23%), Positives = 72/192 (37%), Gaps = 56/192 (29%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+LKD+S I G ++GP +GK+TLL LAG+L +SG V GE V
Sbjct: 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKV-----GETV- 385
Query: 225 ERTAAYISQHDNHI-GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
Y QH + + + TV E
Sbjct: 386 --KIGYFDQHRDELDPDKTVLE-------------------------------------- 405
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+ +G E V YL G + ++ + +SGGE+ R+ ++++ P
Sbjct: 406 ELSEGFPDGDEQEVRA--YLGRFGF--TGEDQ--EKPVGVLSGGEKARLLLAKLLLQPPN 459
Query: 344 ALFMDEISTGLD 355
L +DE + LD
Sbjct: 460 LLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 61/261 (23%), Positives = 92/261 (35%), Gaps = 66/261 (25%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T L +SG ++ G + L+GP +GK+TLL +AG SG + + G + +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A AY+SQ M V L Q +R ELL ++A
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH---QPDKTRTELLNDVAGALA----------- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE--MMVG 340
+ D LG +SGGE +RV + +
Sbjct: 115 ---------------LDDK----LG-----------RSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 341 PAL-----ALFMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392
P L +DE LD S ++++ L Q G A++ T
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-----QGLAIVMSSHDLNHTLRHA 199
Query: 393 DDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 200 HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 36/170 (21%)
Query: 869 LTALMGVSGAGKTTLM-------DVLSGRKTGGYI-----TGNITISGYPKKQETFARIS 916
+TAL+G SG GK+T + D+ G G I NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 917 GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV--------ELKP 967
++ + PF +++E++ Y +R R+ +EE +E E+K
Sbjct: 103 MVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVENALRNAALWDEVKD 153
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
+ L LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 154 RLGDLA-----FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 37/184 (20%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ----E 910
+L +S F G + ++G SGAGK+TL+ +++ + G+I I G K +
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN--RLIDPTEGSILIDGVDIKTIDVID 74
Query: 911 TFARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+I +Q P + TV +++ Y L+ VD E
Sbjct: 75 LRRKIGMVFQQ-----PHLFEGTVKDNIEYGPMLKGEKNVDVE----------------- 112
Query: 968 LIQSLVGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
S+VGL V LS + +R++IA L NP ++ +DEPTS LD + I+
Sbjct: 113 YYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEE 172
Query: 1022 TVRN 1025
+
Sbjct: 173 LIVK 176
|
Length = 241 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 53/255 (20%), Positives = 99/255 (38%), Gaps = 53/255 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF---V 223
ILKD+S + G + ++GP +GK+TL+ + +D + G + +G D+
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
R + Q H+ E TV++ + + +G
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG---------------------------- 105
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
E NV +YYL ++GL + ++ +SGGE +RV+ +
Sbjct: 106 ----------EKNVDVEYYLSIVGL----NKEYATRDVKNLSGGEAQRVSIARTLANNPE 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE ++ LD ++T +I+ L + VI + + + D L+ G +
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 404 VYQGPRELVLEFFES 418
V +FF +
Sbjct: 211 VEYAK---TYDFFTN 222
|
Length = 241 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 63/267 (23%), Positives = 101/267 (37%), Gaps = 53/267 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM-----GE 221
+LK ++ +T L+G GK+TL + L+G L G V + G + G
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 222 FVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ A + Q + I + +AFS R GV E+ RR +EA
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRRVDEA------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L + + I+ +S G++KRV +V
Sbjct: 121 ---------------------------LTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
A L +DE + GLD + Q++ +++ V G VI Y++ D + +L
Sbjct: 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIV--AQGNHVIISSHDIDLIYEISDAVYVLRQ 211
Query: 401 GQIVYQG-PRELVL--EFFESMGFKCP 424
GQI+ G P E+ E E G P
Sbjct: 212 GQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 53/266 (19%), Positives = 97/266 (36%), Gaps = 59/266 (22%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----- 222
+ D I G + +++G SGK+T + L ++ + +G++ +G ++ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 223 --VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
V + + Q MT+ + + G E R+E
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKE---------- 108
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
KA+ LK++GLE DE+ SGG ++RV +
Sbjct: 109 -----KALEL------------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD + + LK+ + ++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 401 GQIVYQG-PREL--------VLEFFE 417
G+IV G P E+ V EF
Sbjct: 206 GEIVQVGTPDEILRNPANEYVEEFIG 231
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 971 SLVGLP------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
LVGL LS Q++R+ +A L P + DEPT+GLD + ++
Sbjct: 150 ELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209
Query: 1025 NTVDTGRTVVCTIH 1038
N G+T++ H
Sbjct: 210 NLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 29/249 (11%)
Query: 799 NSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLN 858
+ SS LI T G +P + + + V+ + D+ V L+
Sbjct: 9 DESSDGLITTTTATDTTDPSG-----DPAASSGETVIEARDL-------NVFYGDEQALD 56
Query: 859 GLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISG---YPKKQETF 912
+S +TA++G SG GK+T + + ++ + G +T G Y +
Sbjct: 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116
Query: 913 A--RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
A R G Q +PF ++Y+++ Y ++ D + R +EE + L +
Sbjct: 117 ALRRRIGMVFQKP--NPFPKSIYDNVAYGLKIQGYDG-DIDER---VEESLRRAALWDEV 170
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
+ + G+ LS Q++RL IA + +P +I MDEP S LD A + + + +
Sbjct: 171 KDQLDSSGLD-LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE 229
Query: 1030 GRTVVCTIH 1038
TVV H
Sbjct: 230 -YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 29/177 (16%)
Query: 871 ALMGVSGAGKTTLMDVLSGRKTGGYI----TGNITISGYPKKQETFARISGYCEQNDIHS 926
L+G +GAGK+TL+ +L+G I +G +T+ G R+S +
Sbjct: 52 GLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG---------RVSSLLGLGGGFN 96
Query: 927 PFVTVYESL-LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985
P +T E++ L L L + E I+E++E EL I LP V S+
Sbjct: 97 PELTGRENIYLNGRLLGLSRKEIDE----KIDEIIEFSELGDFID----LP-VKTYSSGM 147
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
+ RL A+ P I+ +DE + DA R +R + G+TV+ H P
Sbjct: 148 KARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS 204
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 63/245 (25%), Positives = 105/245 (42%), Gaps = 44/245 (17%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFARISGYCEQND 923
G + AL+G SG GK+TL+ +L+G + G + + +S P Q R Q+
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPINMMFQSY 100
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL------KPLIQSLVGLPG 977
P +TV +++ + P+ + +R + E++ LV + KP
Sbjct: 101 ALFPHMTVEQNIAFGLKQDKLPKAEIASR---VNEMLGLVHMQEFAKRKP---------- 147
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCT 1036
LS QR+R+ +A L P ++ +DEP LD + + V + ++ G T V
Sbjct: 148 -HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206
Query: 1037 IHQPGIDIFDAFD---ELFLMKRGG-------QEIYVGPLGRHSCQLISYFEAIPGV--E 1084
H D +A + +M RG +EIY P R+S + I GV E
Sbjct: 207 TH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKE 262
Query: 1085 KIKDG 1089
+ +DG
Sbjct: 263 RQEDG 267
|
Length = 377 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 52/258 (20%)
Query: 156 GILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215
+ + + + LK +S I+ G + +GP +GKTT L L+G L + SG V
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVA 81
Query: 216 GHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
G VP +R ++ + IG + G + +L +L ++
Sbjct: 82 G-----LVPWKRRKKFLRR----IGVV--------------FGQKTQLWWDLPVIDSFYL 118
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
+ +Y A + + +++ +L LE DT V R +S G+R R
Sbjct: 119 LA-----AIYDLPPARFKKRLDELSE----LLDLEELLDTPV-----RQLSLGQRMR--- 161
Query: 335 GEMMVGPAL-----ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389
+ AL LF+DE + GLD I N LK++ GT V+ +
Sbjct: 162 --AEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR-ERGTTVLLTSHYMKDIE 218
Query: 390 DLFDDIILLSDGQIVYQG 407
L ++++ G+++Y G
Sbjct: 219 ALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 50/200 (25%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
L L +++ I G++T+++G GK++LLLA+ G++ + G+V ++ + E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSF 70
Query: 225 ERT-------AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
E T AY +Q + TV E + F + RY+ +T+ +
Sbjct: 71 EATRSRNRYSVAYAAQ-KPWLLNATVEENITFGSPFN--KQRYKAVTDACSLQ------- 120
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI--SGGERKRVTTG 335
PDID+ L T +G+ RGI SGG+R+R+
Sbjct: 121 -PDIDL------------------------LPFGDQTEIGE---RGINLSGGQRQRICVA 152
Query: 336 EMMVGPALALFMDEISTGLD 355
+ +F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK--KQ 909
D +L G+S +TA++G SG GK+T + L+ + + + G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 910 ETFAR---ISGYCEQNDIHSPF-----VTVYESLLYSAWL---RLPPEVDSETRKMFIEE 958
+ R ++ Q + P ++VY+++ Y + R E+D +E
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVES 129
Query: 959 VMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
++ +L I+ + + LS Q++RL IA L P ++ MDEP GLD A+
Sbjct: 130 ALKDADLWDEIKHKIHKSALD-LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMK 188
Query: 1019 VMRTVRN 1025
V +++
Sbjct: 189 VESLIQS 195
|
Length = 261 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQ 1039
LS Q++R+ IA L NPS+I +DE TS LD A ++ VR + T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201
Query: 1040 PGIDIFDAF--DELFLMKRG 1057
D+ +A D + +M +G
Sbjct: 202 ---DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 869 LTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG---YPKKQET--FARISGYCE 920
+TAL+G SG GK+T + L+ I G ++I G Y + + G
Sbjct: 40 VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVF 99
Query: 921 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMF---IEEVMELVELKPLIQSLVGLP 976
Q +PF +++Y+++ Y P + +K +E + L + P
Sbjct: 100 QKP--NPFPMSIYDNVAYG------PRIHGANKKDLDGVVENALRSAALWDETSDRLKSP 151
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1036
+S LS Q++RL IA L P II DEPTS LD + A + + N + T+V
Sbjct: 152 ALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN-LKKDYTIVIV 209
Query: 1037 IH--QPGIDIFDAFDELFLM 1054
H Q I D + FLM
Sbjct: 210 THNMQQAARISD-YTGFFLM 228
|
Length = 258 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 6e-04
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 960 MELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARAAA 1017
E + + L Q L+ + G S RL +A+ L P ++ +DE TS LDA A
Sbjct: 38 GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA 97
Query: 1018 IVMRTVRNTVD------TGRTVVCTIHQPGI----DIFDAFDELFLMKRG 1057
+++ + TV+ T + + FD ++
Sbjct: 98 LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-04
Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 38/250 (15%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
PS ++ + +LK +S I G M ++G SGK+TL+ L G LD + RV G D
Sbjct: 15 PSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPTSGTYRVA--GQD 71
Query: 219 MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
+ + A RE F + RY LL+ L +N
Sbjct: 72 VATLDADALAQL------------RREHFGF------IFQRYHLLSHLTAAQN------- 106
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
++ + + + L+ LGLE + +SGG+++RV+ +
Sbjct: 107 VEVPAVYAGLERKQRLLRAQE--LLQRLGLEDRVEYQPSQ-----LSGGQQQRVSIARAL 159
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
+ + DE + LDS + +++ L Q + G VI ++ P+ + +I +
Sbjct: 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLR--DRGHTVI-IVTHDPQVAAQAERVIEI 216
Query: 399 SDGQIVYQGP 408
DG+IV P
Sbjct: 217 RDGEIVRNPP 226
|
Length = 648 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY--ITGNITISGYPKKQETFAR 914
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 915 ISGYC---EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-LKPLIQ 970
+ QN +H T+ ++ Y+ + E E +M M+ + + +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFINKMDNGLD 471
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 472 TVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALD 512
|
Length = 582 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGR---KTGGYITGNITISGYPKKQETFARISGY 918
G+ + ++G +G GKTT + +L+G G T+S Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-Y-KPQYIKADYEG- 76
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978
TV + LL S D T F E+ + ++++ ++ V
Sbjct: 77 -----------TVRD-LLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-04
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS--GRKTGG--YITGNITISGYPKKQETF 912
L+G+S G A++G SG GK+TL +L+ TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 913 ARISGYCEQNDIHSPFVTVYESL--------LYSAWLRLPPEVDSETRKMFIEEVMELVE 964
R I F Y SL + L + + + R+ +M V
Sbjct: 90 LR-------QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVG 142
Query: 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
L+P + P + S QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 143 LRP--EHYDRYPHM--FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 47/184 (25%), Positives = 70/184 (38%), Gaps = 52/184 (28%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISGYPKKQETFA 913
+ G+ F +TAL+G SG+GK+T + L+ +TG I G
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI-------- 87
Query: 914 RISGYCEQNDIHSPFVTVYE--SLLYSAWLRLPP-------------EVDSETRKMFIEE 958
DI+ + VYE + + R P E K ++E
Sbjct: 88 ---------DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDE 138
Query: 959 VMELVELKP----------LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008
++E LK L +S + L G Q++RL IA + P I+ MDEP
Sbjct: 139 IVE-TSLKQAALWDQVKDDLHKSALTLSG------GQQQRLCIARAIAVKPDILLMDEPA 191
Query: 1009 SGLD 1012
S LD
Sbjct: 192 SALD 195
|
Length = 267 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 316 VGDEMIRGISGGERKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINS 374
V + + G+SGG+++RV + + P + L +DE ++ LD T ++ LK +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSALDPITRREVRALLKS-LQAQL 150
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQ 402
G V+ + E L D +++L DG+
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 53/258 (20%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMG 220
K ++ DVS + G + LLGP +GKTT + G + D SG++ + D+
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-----SGKILLDDEDIT 69
Query: 221 EFVPERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK 276
+ + A Y+ Q + ++TV + + R + L + R+E
Sbjct: 70 KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE-----IREKDLKKAERKE------ 118
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
E + + L+ + D+ +SGGER+RV
Sbjct: 119 -----------------ELDAL----LEEFHITHLRDSKAY-----SLSGGERRRVEIAR 152
Query: 337 -MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
+ P L DE G+D I +K + G V+ ET D+ D
Sbjct: 153 ALAANPKFILL-DEPFAGVDPIAVIDIQRIIKH--LKDRGIGVLITDHNVRETLDICDRA 209
Query: 396 ILLSDGQIVYQG-PRELV 412
++SDG+++ +G P E+V
Sbjct: 210 YIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 0.001
Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 50/238 (21%)
Query: 175 IKPGRMTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNGHDMGEFVPE---RTAA 229
+ G+ L+GP +GKT+LL AL G L SLK+ NG ++ E PE + +
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKI------NGIELRELDPESWRKHLS 426
Query: 230 YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIA 289
++ Q + + T+R+ + PD + +A+
Sbjct: 427 WVGQ-NPQLPHGTLRDNVLLG-------------------------NPDASDEQLQQAL- 459
Query: 290 TEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDE 349
+ A V L GL DT +GD+ G+S G+ +R+ ++ P L +DE
Sbjct: 460 ---ENAWVSEFLPLLPQGL----DTPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDE 511
Query: 350 ISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ LD+ + ++ L + V L+ + +D I ++ DGQIV QG
Sbjct: 512 PTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 19/190 (10%)
Query: 858 NGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITI---SGYPKKQET 911
+S + G + G+ G+G+T LM+ L G R G I S ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 912 FARISGYCEQNDIHSPF-----VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
A I+ N F + + SL + + E EL+ LK
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 967 --PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+ Q++ L G Q+K L I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQNITELSG-----GNQQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1025 NTVDTGRTVV 1034
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 44/242 (18%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEF 222
+LK + +K G + +++GP SGK+TLL + + D SG + +G
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-----SGTIIIDGLK---- 63
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
++ +I +R+ + V ++ L L EN I P
Sbjct: 64 --------LTDDKKNI--NELRQKVGM------VFQQFNLFPHLTVLEN---ITLAP--- 101
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-MMVGP 341
+K EA L+ +GL A D +SGG+++RV + + P
Sbjct: 102 --IKVKGMSKAEAEERALELLEKVGLADKA-----DAYPAQLSGGQQQRVAIARALAMNP 154
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ LF DE ++ LD ++++ +K G ++ + ++ D +I + DG
Sbjct: 155 KVMLF-DEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEMGFAREVADRVIFMDDG 211
Query: 402 QI 403
+I
Sbjct: 212 RI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 48/250 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
L +S I G ++G +GK+TLL A+AG L + SG++ +G D+ +
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVA 76
Query: 226 RTAAYISQ-----HDNHIGEMTVRETLAFSA-RCQGVGSRYELLTELARRENEAGIKPDP 279
+ A +++ E+T+ E LA + R + G L
Sbjct: 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRR------------ 124
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
+ + +A G LGLE +G +SGG+R+ ++ +
Sbjct: 125 --SSFRERLARLG-------------LGLENRLSDRIGL-----LSGGQRQALSLLMATL 164
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI---SLLQPAPETYDLFDDII 396
P L +DE + LD T ++ + V + T ++ ++ D + +I
Sbjct: 165 HPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED----ALDYGNRLI 220
Query: 397 LLSDGQIVYQ 406
+L G+IV
Sbjct: 221 MLHSGKIVLD 230
|
Length = 263 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 59/277 (21%), Positives = 105/277 (37%), Gaps = 60/277 (21%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
+ D S ++ G + +++G SGK+TL+ L ++ + G + +G D+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAEL 100
Query: 226 -----RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ + + Q + TV E +AF QGV A RE A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP--------KAEREERA------- 145
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
++A+ G E Y D+ +SGG ++RV +
Sbjct: 146 ----LEALELVGLE-----GY---------------ADKYPNELSGGMQQRVGLARALAN 181
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD ++ + L + + ++ + E + D I ++ D
Sbjct: 182 DPDILLMDEAFSALDPLIRTEMQDELLE-LQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240
Query: 401 GQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
G+IV G P E++L P V DF++ V
Sbjct: 241 GEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 324 ISGGERKRV-TTGEMMVGPALALF-MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
+SGGE +RV E+ P LF +DE STGL Q++ +K I+ G VI L
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG--LIDLGNTVI-L 144
Query: 382 LQPAPETYDLFDDIILL------SDGQIVYQG 407
++ + D II S G++V+ G
Sbjct: 145 IEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG---YPKKQETF 912
+L GL+ + G + A+MG +G+GK+TL V++G + G+I G + E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 913 ARISGYCE-QNDIHSPFVT-------VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
A + + Q I P V+ Y S L PE+D I E ++LV
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGL---PELDPLEFLEIINEKLKLVG 138
Query: 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+ P S + G S ++KR I + + + +DE SGLD A I+ +
Sbjct: 139 MDP---SFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGIN 195
Query: 1025 NTVDTGRTVVCTIH 1038
+ + +++ H
Sbjct: 196 KLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 55/261 (21%), Positives = 101/261 (38%), Gaps = 49/261 (18%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN-GHDMGEF 222
L L +VS I G ++G SGKTT + L L L +G + + + +
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEWIFKDEKNKK 75
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVG-----SRYELLTELARRENEAGIKP 277
+ + I + ++ + VG + Y+L E I
Sbjct: 76 KTKEKEKVLE--KLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF--------EQTI-- 123
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR---GISGGERKRVT- 333
+ DI ++ +EA Y++++GL+ + R +SGG+++RV
Sbjct: 124 EKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE-------SYLQRSPFELSGGQKRRVAL 176
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
G + + P L DE + GLD +I+ +++ T ++ T+DL D
Sbjct: 177 AGILAMEPDF-LVFDEPTAGLDPQGVKEILEIFD-NLNKQGKTIILV-------THDL-D 226
Query: 394 DI-------ILLSDGQIVYQG 407
++ I DG+I+ G
Sbjct: 227 NVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+L+DVS + G++T++LG SGK+TLL +L + + S GRV ER
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRV----------WAER 721
Query: 227 TAAYISQHDNHIGEMTVRETLAF 249
+ AY+ Q I TVR + F
Sbjct: 722 SIAYVPQQ-AWIMNATVRGNILF 743
|
Length = 1560 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 25/156 (16%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR--ISGYCEQN 922
G A++G SGAGK+TL+++++G T +G++T++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 923 DIHSPFVTVYE--SLLYSAWLRLPPE----VDSETRKMFIEEVMELVELKPLIQSLVGLP 976
++ +TV + L + L+L + + R+M IE+++ LP
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLAR------------LP 127
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
G LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 G--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 39/179 (21%)
Query: 869 LTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YPKKQETF---ARI 915
+TA +G SG GK+T + D + K + G + I G Y A++
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGIDVYSVDTNVVLLRAKV 88
Query: 916 SGYCEQNDIHSPFV-TVYESLLYSAWL--------RLPPEVDSETRKMFIEEVMELVELK 966
G Q +PF ++Y+++ Y L +L V+ + + E EL
Sbjct: 89 -GMVFQKP--NPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWE-----ELG 140
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
++ LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 141 DRLKD-----SAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 19/207 (9%)
Query: 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGY--PKKQETFARI 915
+ + G A++G +G+GK+TL+ L+G + T G +T G I+ KK + +
Sbjct: 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKK 86
Query: 916 SGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP--LIQSL 972
G Q H F TV + + + E D++ + E++ELV L L +S
Sbjct: 87 VGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK---AREMIELVGLPEELLARSP 143
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGR 1031
L G Q +R+ IA L P ++ +DEPT+GLD + +M + + G
Sbjct: 144 FELSG------GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGL 197
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRGG 1058
T V H D D++ +M +G
Sbjct: 198 TTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 39/206 (18%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L D+S + PG + +L+GP +GKTTL+ + GK G V ++G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGD---------- 67
Query: 228 AAYISQHDNH-IGEMTVRETLAFSARCQGVGSRYE---LLTELARREN-EAGIKPDPDID 282
+++ H I G+G +++ + L REN E + D +
Sbjct: 68 -TDLTKLPEHRIARA-------------GIGRKFQKPTVFENLTVRENLELALNRDKSVF 113
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ A + + D L +GL D + +S G+++ + G ++
Sbjct: 114 ASLFARLRAEERRRI--DELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDP 166
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQ 368
L +DE G+ + T + LK
Sbjct: 167 KLLLLDEPVAGMTDAETEKTAELLKS 192
|
Length = 249 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG-------RKTGGYITGNITISGYPKKQ 909
LN +S + G TAL+G +G+GK+T+ +++G + IT+ G
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS------KITVDGITLTA 76
Query: 910 ETFARIS---GYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
+T I G QN + FV TV + + + R V + +V+ V
Sbjct: 77 KTVWDIREKVGIVFQNP-DNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVG 132
Query: 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+ I S + LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 133 MLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 1025 N-TVDTGRTVVCTIH 1038
TV+ H
Sbjct: 188 KLKKKNNLTVISITH 202
|
Length = 282 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 59/270 (21%), Positives = 108/270 (40%), Gaps = 71/270 (26%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTT---LLLALAGKLD 203
F+++ F Y P+R L +L+DVS + PG +T L+GP SGK+T LL
Sbjct: 14 FQNVTFAY----PTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 204 SSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGS-R 259
G+V +G + ++ + + + Q ++++ +A+ G+ S
Sbjct: 69 ------GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCS 116
Query: 260 YELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319
+E + E A++ + + L DT VG+
Sbjct: 117 FECVKEAAQKAHAHSF-----------------------------ISELASGYDTEVGE- 146
Query: 320 MIRG--ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
+G +SGG+++RV ++ L +DE ++ LD+ + Q V
Sbjct: 147 --KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE-QQVQQALYDWPERRTVL 203
Query: 378 VI----SLLQPAPETYDLFDDIILLSDGQI 403
VI S ++ A D I++L G+I
Sbjct: 204 VIAHRLSTVERA-------DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 47/260 (18%)
Query: 156 GILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215
G L K+ +L +VS I+ G LLG GK+TL L G L+ + G V++
Sbjct: 15 GGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKPAQ--GTVSFR 71
Query: 216 GHDMGEFVPE------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARR 269
G D+ + + R + Q + + R T+ Q +G LT L
Sbjct: 72 GQDLYQLDRKQRRAFRRDVQLVFQ--DSPSAVNPRMTVR-----QIIGEPLRHLTSLDES 124
Query: 270 ENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGER 329
E +A I L ++GL + D++ R +SGG+
Sbjct: 125 EQKARIA------------------------ELLDMVGL----RSEDADKLPRQLSGGQL 156
Query: 330 KRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388
+R+ + V P L + +DE + LD I+ L++ + GTA + +
Sbjct: 157 QRINIARALAVKPKL-IVLDEAVSNLDMVLQAVILELLRK-LQQAFGTAYLFITHDLRLV 214
Query: 389 YDLFDDIILLSDGQIVYQGP 408
+ ++ GQIV +
Sbjct: 215 QSFCQRVAVMDKGQIVEECD 234
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 68/272 (25%), Positives = 107/272 (39%), Gaps = 83/272 (30%)
Query: 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD--------MGE 221
DVS + PG + ++G SGKTTLL AL+ +L +G V Y D + E
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSE 80
Query: 222 FVPERTA------AYISQHDNHIGEMTVRETLAFSA------RCQGVGSR-YELLTELAR 268
ER ++ QH M V SA R VG+R Y + A
Sbjct: 81 --AERRRLLRTEWGFVHQHPRDGLRMQV------SAGGNIGERLMAVGARHYGDIRATA- 131
Query: 269 RENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328
D+ +V E+ A + D++ SGG
Sbjct: 132 ------------------------------GDWLERV---EIDAARI--DDLPTTFSGGM 156
Query: 329 RKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387
++R+ +V P L +FMDE + GLD S ++++ L+ V G AV+ +
Sbjct: 157 QQRLQIARNLVTHPRL-VFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIV------ 208
Query: 388 TYD------LFDDIILLSDGQIVYQGPRELVL 413
T+D L ++++ G++V G + VL
Sbjct: 209 THDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 956 IEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008
++ + + I+SL VG G S LS Q++R+ IA L+ P I+ +DE T
Sbjct: 1328 VKRACKFAAIDEFIESLPNKYDTNVGPYGKS-LSGGQKQRIAIARALLREPKILLLDEAT 1386
Query: 1009 SGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 1039
S LD+ + ++ +T+ + D +T++ H+
Sbjct: 1387 SSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 67/259 (25%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T++ +++ IK G M LLGP GKTT+L +AG L+ G++ +G D V
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKP--TEGQIFIDGED----VTH 72
Query: 226 RTAAYISQHDNHI--------GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
R+ I Q D + M++ E + + + GV E +R EA
Sbjct: 73 RS---IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA---- 120
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
L+++ L D V D+ ISGG+++RV
Sbjct: 121 -------------------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARA 150
Query: 338 MV-GPALALFMDEISTGLDSS---TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
++ P + LF DE + LD++ + + + L+Q +I S + + E + + D
Sbjct: 151 LILKPKVLLF-DEPLSNLDANLRRSMREKIRELQQQFNITS----LYVTHDQSEAFAVSD 205
Query: 394 DIILLSDGQIVYQG-PREL 411
+I+++ G+I+ G P+EL
Sbjct: 206 TVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 66/256 (25%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223
HL + D++ ++ G +LGP +GK+TLL +AG L + SG +T NG D
Sbjct: 13 HLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTP 67
Query: 224 P-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
P R + + Q +N +TV + + G+ G+K +
Sbjct: 68 PSRRPVSMLFQENNLFSHLTVAQNIGL-----GL---------------NPGLKLNAAQR 107
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ AIA + +G+E + G +SGG+R+RV +V
Sbjct: 108 EKLHAIARQ--------------MGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQ 148
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL----------QPAPETYDLF 392
L +DE + LD + +++ + Q ++LL + AP +
Sbjct: 149 PILLLDEPFSALDPALRQEMLTLVSQVCQ----ERQLTLLMVSHSLEDAARIAPRS---- 200
Query: 393 DDIILLSDGQIVYQGP 408
++++DG+I + GP
Sbjct: 201 ---LVVADGRIAWDGP 213
|
Length = 232 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 0.002
Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 17/258 (6%)
Query: 795 ISGRNSSSKS-------LILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQ 847
I G N S KS L+L RG+ + + DE +++P E +++
Sbjct: 4 IIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDE--NEIEIPLEFEIE 61
Query: 848 GVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907
L D + G + L + R +
Sbjct: 62 EFLIDGIRYRYGFELDKEDILEELLYEYRKGEELLF---ERERSKESFEKSPEKKRELRG 118
Query: 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+E ++ + + + LL +++ ++ V L
Sbjct: 119 LREVLLLLNLSLSSFLLLASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESD 178
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVR 1024
L++ L L + G+S ++ L + + L++ S++ +DEP +GL + ++ ++
Sbjct: 179 LLRLLKLL--IKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLK 236
Query: 1025 NTVDTGRTVVCTIHQPGI 1042
+ G ++ T H P +
Sbjct: 237 ELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1040
LS +++RL A L+ P +F+DE TS LD + + + ++ + G TV+ H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRP 148
Query: 1041 GIDIF 1045
+ F
Sbjct: 149 SLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 14/208 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFA 913
LN S F+ +T ++G +G+GK+T++ + +G +TG I G+ I KK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 914 RIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R+ G Q + F E + + L E ++ ++V EL++L L +
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL-----GENKQEAYKKVPELLKLVQLPE 141
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDT 1029
V LS Q++R+ +A + + + + +DEPT GLD + + R +
Sbjct: 142 DYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ ++ H + DE+ +M G
Sbjct: 201 KKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.002
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL 202
+LKD+S I PG L+G +GK+TLL +AG+L
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 38/195 (19%)
Query: 840 MPQEMKLQGV--LEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSG- 889
M ++K++GV K +L ++ F +TA++G SG GK+TL+ D++SG
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 890 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVD 948
R G + N I + G Q +PF ++++++ + P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP--NPFPKSIFDNVAFG------PRML 112
Query: 949 SETRKMFIEEVMELVELKPLIQSLV-----------GLPGVSGLSTEQRKRLTIAVELVA 997
T + ++EV+E K L Q+ + GL LS Q++RL IA L
Sbjct: 113 GTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAI 164
Query: 998 NPSIIFMDEPTSGLD 1012
P +I MDEP S LD
Sbjct: 165 EPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.002
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 31/168 (18%)
Query: 861 SGAFRPG-VLTALMGVSGAGKTTLMDVLSGR--KTGGYITGNITISGYPKKQETFARISG 917
G G V+ + G +G GKTT +L+G G + + IS Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 918 YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 977
TV + LL S ++ S + E+++ ++L+ L+ V
Sbjct: 412 --------DYDGTVED-LLRSI----TDDLGSS---YYKSEIIKPLQLERLLDKNV---- 451
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 452 -KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 19/161 (11%)
Query: 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYC 919
LS R G A++G +G+GK+TL +L+G +G + I +P + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDY----SYR 85
Query: 920 EQNDIHSPFVTVYESL--------LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
Q I F SL + LRL +++ E R+ I E + V L P
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP--DH 142
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 143 ASYYPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219
L D+S + PG + +++GP +GKTT++ + GK G V + G D+
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDL 66
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 51/265 (19%), Positives = 102/265 (38%), Gaps = 67/265 (25%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG-- 220
K +++DVS + G + LLGP +GKTT + G + +G + + D+
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLL 70
Query: 221 ----------EFVPERTAAY--ISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELAR 268
++P+ + + +S +DN + + +R+ L+ R
Sbjct: 71 PLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR--------------ED 116
Query: 269 RENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328
R NE ++ +++++ L D M + +SGGE
Sbjct: 117 RANE------------------------LMEEFHIEHLR----------DSMGQSLSGGE 142
Query: 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388
R+RV + + +DE G+D + I + +H+ +SG V+ ET
Sbjct: 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII-EHLR-DSGLGVLITDHNVRET 200
Query: 389 YDLFDDIILLSDGQIVYQGPRELVL 413
+ + ++S G ++ G +L
Sbjct: 201 LAVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHDMGEFVPE 225
LK ++ I ++T L+GP GK+TLL L L +K++G++T +G D+ +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 226 R----TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
+ Q N M++ E +A+ R QG+ + L
Sbjct: 79 ADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVL 118
|
Length = 249 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 24/192 (12%)
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMMVGPALAL 345
A+ + EA + +YL +GL D + G+SGG+++RV G + + P + +
Sbjct: 144 ALGVKKSEAKKLAKFYLNKMGL----DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI 199
Query: 346 FMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
F DE + GLD Q++ K + V + ++ D++I++ G+
Sbjct: 200 F-DEPTAGLDPKGEHEMMQLILDAKA-----NNKTVFVITHTMEHVLEVADEVIVMDKGK 253
Query: 403 IVYQG-PRELVL--EFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVE 459
I+ G P E+ S + P+ V + ++ +KD K Y +K R T+E
Sbjct: 254 ILKTGTPYEIFTDQHIINSTSIQVPR---VIQVINDL-IKKDPK-YKKLYQKQPR--TIE 306
Query: 460 EFAEAFQSFHVG 471
+ A+A F G
Sbjct: 307 QLADAINEFIKG 318
|
Length = 320 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGY 918
G G + ++G +G GKTT + +L+G + G ++ +S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-DLKVS-Y-KPQYISPDYDG- 416
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978
TV + L + S F E+++ + L+ L++ V
Sbjct: 417 -----------TVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERPV----- 453
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 52/258 (20%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNG-----HDMG 220
L D++ I ++T L+GP GK+T L L L S++K+ G V +G D+
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ + Q N M++ + +A+ R G+ + EL
Sbjct: 80 VVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKEL------------------ 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR---GISGGERKRVTTGEM 337
+ I ++ LK L V D++ + +SGG+++R+
Sbjct: 121 ---------------DKIVEWALKKAALW----DEVKDDLKKSALKLSGGQQQRLCIART 161
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD-----LF 392
+ + MDE ++ LD +T +I + + + + V +Q A D L
Sbjct: 162 IAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM 221
Query: 393 DDIILLSDGQIVYQGPRE 410
D+I + + ++ P++
Sbjct: 222 GDLIEFNKTEKIFLEPQK 239
|
Length = 251 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
DT + + + R SGGER+R+ +++ A + +DE + GLD T Q+++ + + +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-- 145
Query: 373 NSGTAVISLLQPAPETYDL-----FDDIILLSDGQIVYQG 407
+I + T+ L D I+ L +G+I+ QG
Sbjct: 146 -KDKTLIWI------THHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 5/124 (4%)
Query: 284 YMKAIA-TEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT----GEMM 338
+ AI G + G V A + +SGGE++
Sbjct: 37 ILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALAS 96
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
+ P +DEI GLD + + +H+ + VI+ L E D I +
Sbjct: 97 LKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKKV 156
Query: 399 SDGQ 402
G
Sbjct: 157 ITGV 160
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 41/198 (20%)
Query: 840 MPQEMKLQG-VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT----TLMDVLSG--RKT 892
MPQ+++L+ L+ L++G+S + G + AL+G SG+GK+ + +L R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 893 GGYITGNITISGYPK-----KQETFARI-----SGYCEQNDIHSPFVTVYESLLYSAWLR 942
G + + G P + A I S + N +H+ E+ L
Sbjct: 61 A----GRVLLDGKPVAPCALRGRKIATIMQNPRSAF---NPLHTMHTHARETCLALG--- 110
Query: 943 LPPEVDSETRKMF---IEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 999
P + + T + +E +++L P +S +R+ IA+ L+
Sbjct: 111 KPADDATLTAALEAVGLENAARVLKLYPF-----------EMSGGMLQRMMIALALLCEA 159
Query: 1000 SIIFMDEPTSGLDARAAA 1017
I DEPT+ LD A A
Sbjct: 160 PFIIADEPTTDLDVVAQA 177
|
Length = 254 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 34/164 (20%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG---YPKK---QETFARISG 917
G +TAL+G SG GK+T++ L+ G + G + G Y + E RI
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGM 98
Query: 918 YCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV--- 973
+Q + PF ++YE++ + A ++ T M ELVE + L ++ V
Sbjct: 99 VFQQPN---PFPKSIYENIAFGA------RINGYTGDM-----DELVE-RSLRKAAVWDE 143
Query: 974 -----GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 144 CKDKLNESGYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1039
LS Q++R+ IA + P II +DE TS LD +++T++ D TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200
Query: 1040 PGIDIFDAFDELFLMKRGGQE 1060
+D D + +MK G E
Sbjct: 201 --LDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 14/160 (8%)
Query: 869 LTALMGVSGAGKTTLMDVL---SGRKTGGYITGNITISG---YPKKQET--FARISGYCE 920
+TA++G SG GK+T + L S + + G + G Y + R G
Sbjct: 35 VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVF 94
Query: 921 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979
Q +PF +++YE++ Y +R+ ++ +E ++ L ++ + +
Sbjct: 95 QRP--NPFPMSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSAL- 149
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.004
Identities = 65/281 (23%), Positives = 109/281 (38%), Gaps = 66/281 (23%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL----DSSLKVSGRVTYNGHDMGEFV 223
L D++ I G + ++G GKT+L+ A+ G+L SS+ + G V Y V
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAY--------V 684
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
P+ + I TVRE + F + + RY ++ ++ D+D+
Sbjct: 685 PQVS---------WIFNATVRENILFGSDFES--ERYWRAIDVTALQH--------DLDL 725
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
TE E V ISGG+++RV+ + +
Sbjct: 726 LPGRDLTEIGERGV-------------------------NISGGQKQRVSMARAVYSNSD 760
Query: 344 ALFMDEISTGLDSSTTFQIVN-CLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
D+ + LD+ Q+ + C+K + + V + L P L D IIL+S+G
Sbjct: 761 IYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEGM 816
Query: 403 IVYQGPRELVLEFFESMGF--KCPKRKGVADFLQEVTSRKD 441
I +G E +S K + G D QEV + +
Sbjct: 817 IKEEGTFA---ELSKSGSLFKKLMENAGKMDATQEVNTNDE 854
|
Length = 1495 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.004
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 29/178 (16%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 924
+ G A++G +GAGKTTL+++L ++ G I I G T + +
Sbjct: 359 KAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGIDINTVT---------RESL 407
Query: 925 HSPFVTVYESL-LYSAWLRLPPEVDSETRKMFIEEVMELVELKP---LIQS-------LV 973
TV++ L++ +R + E EEV E + I LV
Sbjct: 408 RKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKRSNGYDTLV 465
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1031
G G + LS +R+RL IA ++ N I+ +DE TS LD A V+N +D R
Sbjct: 466 GERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAIDALR 518
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.004
Identities = 21/73 (28%), Positives = 30/73 (41%)
Query: 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDN 236
PG + L++GPP SGKTTL ALA +L + + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 237 HIGEMTVRETLAF 249
GE+ +R LA
Sbjct: 61 GSGELRLRLALAL 73
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015
LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 61/267 (22%), Positives = 109/267 (40%), Gaps = 50/267 (18%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE------ 221
L +V+ I+ G L+G SGK+TL+ L G L + SG++ +G D+ +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
+ ++ + + E T+ + +AF G+ E+ R A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSE-----EEIENRVKRA-------- 126
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
M + L E D + +SGG+++RV ++
Sbjct: 127 ---MNIVG----------------LDYEDYKDKSPFE-----LSGGQKRRVAIAGVVAME 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE + GLD +I+N +K+ +H +I + + L D II+++ G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILNKIKE-LHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 402 QIVYQG-PRELV--LEFFESMGFKCPK 425
+ QG PRE+ +E ES+G P+
Sbjct: 222 KCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS---LKVSGRVTY 214
+LK+++ I+ G M + G SGKT+LL+ + G+L+ S +K SGR+++
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISF 102
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1206 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-216 Score=1971.33 Aligned_cols=1102 Identities=54% Similarity=0.930 Sum_probs=1023.7
Q ss_pred CCcHHHhhHHHHhhCCChhhhhhcccccC-CCCcceeccCCCChHhhHHHHHHHHhccccCHHHHHHHHHHHHhhcCCCC
Q 000971 36 EDDEEALKWAALEKLPTYNRLRKGLLTTS-RGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDL 114 (1206)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 114 (1206)
+||||++||||++||||++| +.+.+. ++ ++|+.++++.+++.++++..+..++|+++++.++|+|++++ ++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~ 83 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFES---EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--EL 83 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhccC---cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cC
Confidence 44999999999999999998 555432 22 79999999999999999999999999999999999999998 89
Q ss_pred CcceEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCCCcccceEeeceeeeEeCCeEEEEEcCCCCcHHHH
Q 000971 115 PKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTL 194 (1206)
Q Consensus 115 p~~~v~f~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTL 194 (1206)
|.++++++++.+++++..| ||+.|...+.++.+++..+.. ++.+++||+|+||.++||+|++++||||||||||
T Consensus 84 p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttl 157 (1391)
T KOG0065|consen 84 PTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTL 157 (1391)
T ss_pred CceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHH
Confidence 9999999999999998766 999999999999887765543 5567899999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcC
Q 000971 195 LLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274 (1206)
Q Consensus 195 L~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (1206)
|++|+|.++..++..|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.|++ +..|++++
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~-- 232 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKL-- 232 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHH--
Confidence 9999999998877889999999999999999999999999999999999999999999999999987 55565543
Q ss_pred CCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCC
Q 000971 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGL 354 (1206)
Q Consensus 275 i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgL 354 (1206)
..++|++++++||++|+||+|||+++||+||||||||+||++++++++++||||+|+||
T Consensus 233 ---------------------~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 233 ---------------------AAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ---------------------HHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 13789999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHH
Q 000971 355 DSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1206)
Q Consensus 355 Ds~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~ 434 (1206)
||+|+.+|+++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||++
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCccccccccccccccccccchHHHHHHHHHHHHH
Q 000971 435 EVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELL 514 (1206)
Q Consensus 435 ~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~ 514 (1206)
++++++++.++|..+..|+.+.+++|+.+.|.+++.+.++..+++.++++.+.++.++..++|.+++|+|+++|+.|+++
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCC
Q 000971 515 LMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRF 594 (1206)
Q Consensus 515 l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~ 594 (1206)
+++||.+++++++++.+++++++|++|+++.+ .+..++..+.|++||++++.+|+++++++++++++|||+|||+..|
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~f 529 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSF 529 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccc
Confidence 99999999999999999999999999999985 4556778899999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccc----
Q 000971 595 FPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF---- 670 (1206)
Q Consensus 595 y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~---- 670 (1206)
|++||++++++++++|..++++++|.+|+||++|+.+++++||.||+++++++++++++||+++++++++..|+++
T Consensus 530 Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~ 609 (1391)
T KOG0065|consen 530 YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGIL 609 (1391)
T ss_pred cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred --------------cchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCC---------------ccchhHHHhhc
Q 000971 671 --------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNS---------------YESIGVQVLKS 721 (1206)
Q Consensus 671 --------------~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~---------------~~~~g~~~L~~ 721 (1206)
.+||+||+|++|+||++|+++++++|||++++|.|.+.++ ..+.|..++..
T Consensus 610 ~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g 689 (1391)
T KOG0065|consen 610 LLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSG 689 (1391)
T ss_pred HHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEec
Confidence 8899999999999999999999999999999999973221 25678899999
Q ss_pred cCcc-----cchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCCcc
Q 000971 722 RGFF-----AHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDIS 796 (1206)
Q Consensus 722 ~~~~-----~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1206)
++|. ...+|+|+++|+++||.++|+++++++++|+++..+.+..+..+....+........ .....
T Consensus 690 ~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~ 760 (1391)
T KOG0065|consen 690 RDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGS---------SSEIE 760 (1391)
T ss_pred ccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhccc---------ccccc
Confidence 8888 777899999999999999999999999999999988887766443322211100000 00000
Q ss_pred CCCCCccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccC
Q 000971 797 GRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVS 876 (1206)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~s 876 (1206)
.. .+ ..+..+.+++.|++|..++++||.|.+++|.+++.+| +++++|+||||.++||.+|||||+|
T Consensus 761 ~~---------~~--s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~S 826 (1391)
T KOG0065|consen 761 KL---------DD--SSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGES 826 (1391)
T ss_pred cc---------cc--ccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCC
Confidence 00 00 0111345788899999999999999999999988877 6789999999999999999999999
Q ss_pred CCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHH
Q 000971 877 GAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFI 956 (1206)
Q Consensus 877 GaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v 956 (1206)
|||||||||+|+||++.|.++|+|+|||.|+++..|+|++|||+|+|+|.+.+||+|.|.|+|+||+|.+++.+++.++|
T Consensus 827 GAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yV 906 (1391)
T KOG0065|consen 827 GAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYV 906 (1391)
T ss_pred CCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 000971 957 EEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1035 (1206)
Q Consensus 957 ~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P-~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~ 1035 (1206)
++|++.++|++++|.+||.+| +|||++|||||+||+||++|| .||||||||||||+++++.|+++||+++++|+||||
T Consensus 907 e~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlC 985 (1391)
T KOG0065|consen 907 EEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILC 985 (1391)
T ss_pred HHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999 999999999999999999999 899999999999999999999999999999999999
Q ss_pred EecCCchHHHHhcCeEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcccCCCCCCccceeeeeeccchhhhcCCCHHHH
Q 000971 1036 TIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDI 1115 (1206)
Q Consensus 1036 ~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~~~~~~~~~yf~~~~g~~~~~~~~npa~~~l~~~~~~~~~~~~~~~~~~ 1115 (1206)
||||||.++|+.||++++|++||++||+|++|++|+++++||++++|++ |++..||||||||+++.+.+.+.+.||++.
T Consensus 986 TIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~ 1064 (1391)
T KOG0065|consen 986 TIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEI 1064 (1391)
T ss_pred EecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHH
Confidence 9999999999999999999999999999999999999999999999985 666669999999999999888889999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCC-CCCCCCCCccCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcc
Q 000971 1116 FRCSELYRRNKALIEELSKPTPG-SKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWD 1194 (1206)
Q Consensus 1116 ~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~r~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~ 1194 (1206)
|++|++++++++++++++.+.++ ..+..+.++|++|+|.|++.|+||++++|||+|+|+++|++++++.||+||++||+
T Consensus 1065 w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~ 1144 (1391)
T KOG0065|consen 1065 WKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWK 1144 (1391)
T ss_pred HhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeee
Confidence 99999999999999999999888 77888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCc
Q 000971 1195 MGSKTLKEPR 1204 (1206)
Q Consensus 1195 ~~~~~~~~~~ 1204 (1206)
+|++.++.|+
T Consensus 1145 ~g~~~q~lqn 1154 (1391)
T KOG0065|consen 1145 VGHNVQGLQN 1154 (1391)
T ss_pred cCCcHHHHHH
Confidence 9988887775
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-194 Score=1899.89 Aligned_cols=1193 Identities=61% Similarity=1.027 Sum_probs=1040.3
Q ss_pred cccccccccccccccCccccccc-------CCcCCcHHHhhHHHHhhCCChhhhhhcccccC-----CCC---cceeccC
Q 000971 10 ASTSLRGNISRWRTSSVGAFSKS-------LREEDDEEALKWAALEKLPTYNRLRKGLLTTS-----RGE---AFEVDVS 74 (1206)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~ 74 (1206)
++-+.+.+.++|. .+++|++. +..|||||+|+|||+||||||+|+|++++... .|+ ..|+|++
T Consensus 10 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1470)
T PLN03140 10 RSISRSVSRSSRN--MEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVT 87 (1470)
T ss_pred HHHHHHhhhhhhh--hhhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccc
Confidence 4333333445573 36888542 13678999999999999999999999999652 122 2369999
Q ss_pred CCChHhhHHHHHHHHhccccCHHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHhh
Q 000971 75 NLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNY 154 (1206)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (1206)
+|+.++++.+++++++++++|+++|++++++|+|++|+++|++||+|+||+|++++.++++++||++|.+.+.++.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 167 (1470)
T PLN03140 88 KLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGM 167 (1470)
T ss_pred cCChHHHHHHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred hccCCCCcccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCC
Q 000971 155 LGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQH 234 (1206)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~ 234 (1206)
++..++++.+++||+||||.|+|||+++|+||||||||||||+|+|+++++.+++|+|+|||+++++..+++.++||+|+
T Consensus 168 ~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~ 247 (1470)
T PLN03140 168 LGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQN 247 (1470)
T ss_pred hccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEeccc
Confidence 55444555678899999999999999999999999999999999999988777899999999999877777889999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 000971 235 DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1206)
Q Consensus 235 d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1206)
|.|++++||+|||.|+++|++++.++++..+..+++++.++.|+.++|.+|++...++.+.+..++++|+.+||++|+||
T Consensus 248 d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t 327 (1470)
T PLN03140 248 DVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDT 327 (1470)
T ss_pred ccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCc
Confidence 99999999999999999998877766666667777888888888899999999988888888899999999999999999
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.||++++++|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+
T Consensus 328 ~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred eeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 99999999999999999999999999999999999999999999999999999998767889999999999999999999
Q ss_pred EEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhh
Q 000971 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKI 474 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 474 (1206)
|++|++|+++|+||++++.+||+++||.||+++++|||+++++++++++++|.....|+++.++++++++|++++.++++
T Consensus 408 vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~ 487 (1470)
T PLN03140 408 IILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQL 487 (1470)
T ss_pred EEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHH
Confidence 99999999999999999999999999999999999999999999988888887777777778999999999999988888
Q ss_pred HHhhcCCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccc
Q 000971 475 SDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDG 554 (1206)
Q Consensus 475 ~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~ 554 (1206)
.+++..+.++...++.....++|..++++|+++|++|++++++||++.+++++++.+++|+++|++|++++++..+..++
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~ 567 (1470)
T PLN03140 488 ENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDG 567 (1470)
T ss_pred HHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhH
Confidence 88777766665556666666789999999999999999999999999999999999999999999999998765555567
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHH
Q 000971 555 GIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAG 634 (1206)
Q Consensus 555 ~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~ 634 (1206)
..+.|++||++++.+|++++++++++.++|||+|||+..||++|+|+++++++++|+.++++++|++++|||+|+.++++
T Consensus 568 ~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~ 647 (1470)
T PLN03140 568 ALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEAS 647 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccc------------------cchhhHHHHHHhhCHHHHHHHHHHHH
Q 000971 635 RFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVAN 696 (1206)
Q Consensus 635 ~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~------------------~~i~~~~~W~~~isp~~y~~~al~~n 696 (1206)
+||.|++++++++++++++|++++++++++.+|+.+ ++||+||+|++|+||++|+++|+++|
T Consensus 648 ~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~N 727 (1470)
T PLN03140 648 RFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVN 727 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999999999999999999999888654 88999999999999999999999999
Q ss_pred HhcCCccccc-CCCCccchhHHHhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeecccccccc
Q 000971 697 EFLGYSWKKF-TPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQ 775 (1206)
Q Consensus 697 ef~~~~~~~~-~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 775 (1206)
||.+..|.+. +.+...+.|.++|..+++.....|+|++++++++|+++|+++++++++|+++.......+..+......
T Consensus 728 Ef~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~ 807 (1470)
T PLN03140 728 EMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEME 807 (1470)
T ss_pred hccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhh
Confidence 9999888643 222346789999999999988899999999999999999999999999998766555443211110000
Q ss_pred ccccc--cccccccCCC--CCCCc-cCCCCC-c-cchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcc
Q 000971 776 DNRIR--GTVQLSARGE--SGEDI-SGRNSS-S-KSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQG 848 (1206)
Q Consensus 776 ~~~~~--~~~~~~~~~~--~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~ 848 (1206)
..... ...+...... ..+.. ...... . ......+.......++++.+|+.|.+++|+||+|+|+.|.+++..+
T Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~ 887 (1470)
T PLN03140 808 GEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQG 887 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccc
Confidence 00000 0000000000 00000 000000 0 0000000000112235667789999999999999999887665555
Q ss_pred cccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCC
Q 000971 849 VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 928 (1206)
Q Consensus 849 ~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~ 928 (1206)
...+++.+|+|||+.++||+++||||||||||||||++|+|+.++|..+|+|.+||.+..+..+++.+|||+|+|.+++.
T Consensus 888 ~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~ 967 (1470)
T PLN03140 888 VTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQ 967 (1470)
T ss_pred cCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCC
Confidence 44556789999999999999999999999999999999999987777899999999887655567789999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000971 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008 (1206)
Q Consensus 929 ~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPT 1008 (1206)
+||+|+|.|++.+|.+...+.++++++++++++.++|.+++|+.+|.+++++|||||||||+||+||+.+|+||||||||
T Consensus 968 lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 968 VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred CcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 99999999999888776666777778899999999999999999998888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcccCCC
Q 000971 1009 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKD 1088 (1206)
Q Consensus 1009 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~~~~~~~~~yf~~~~g~~~~~~ 1088 (1206)
||||+.++..|++.|++++++|+|||||+|||+.++++.||++++|++||+++|+|+.+++++++++||++++|+++||+
T Consensus 1048 sgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~ 1127 (1470)
T PLN03140 1048 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKE 1127 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCC
Confidence 99999999999999999998899999999999977899999999999889999999999999999999999988888999
Q ss_pred CCCccceeeeeeccchhhhcCCCHHHHHhhcHHHHHHHHHHHHhcCCCCCCCCCCCCCccCCcHHHHHHHHHHHHHHHHh
Q 000971 1089 GYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYW 1168 (1206)
Q Consensus 1089 ~~npa~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~r~~~~~~ 1168 (1206)
++||||||||+++.+.+...+.||++.|++|++++++++.++++..+.+..++..++++|++++|+|++.|+||++++||
T Consensus 1128 ~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~ 1207 (1470)
T PLN03140 1128 KYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYW 1207 (1470)
T ss_pred CCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999987666555679999999999999888888877776666666666788999999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc
Q 000971 1169 RNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTLKEPR 1204 (1206)
Q Consensus 1169 R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~ 1204 (1206)
|||.|+++|+++++++||++|++||++|++..++|+
T Consensus 1208 R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~ 1243 (1470)
T PLN03140 1208 RSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNAND 1243 (1470)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhh
Confidence 999999999999999999999999999998877665
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-153 Score=1521.25 Aligned_cols=1060 Identities=32% Similarity=0.549 Sum_probs=855.2
Q ss_pred ccCHHHHHHHHHHHHhhcCCCCC--cceEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCCCcccceEeec
Q 000971 93 EVDNEKFLLKLKSRIDRVGIDLP--KVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKD 170 (1206)
Q Consensus 93 ~~d~~~~~~~~~~~~~~~~~~~p--~~~v~f~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 170 (1206)
+.|++++++.++++.++.+...| +++|+|+||+|++. ..+...+||++|.+.+.+......+. ..+++++++||+|
T Consensus 2 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~ 79 (1394)
T TIGR00956 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGV-AADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKP 79 (1394)
T ss_pred CCCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEEE-eccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeC
Confidence 35777888776666666655555 99999999999994 44667789999998887765443321 1234456789999
Q ss_pred eeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCeeCCCCCc--cceEEEecCCCCCCCCCCHHHHH
Q 000971 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGEFVP--ERTAAYISQHDNHIGEMTVRETL 247 (1206)
Q Consensus 171 vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~-~~~G~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lTV~Etl 247 (1206)
||+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.|||.++++... ++.++||+|+|.|+|.+||+|||
T Consensus 80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l 159 (1394)
T TIGR00956 80 MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETL 159 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHH
Confidence 999999999999999999999999999999974321 259999999998764332 35699999999999999999999
Q ss_pred HHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChh
Q 000971 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327 (1206)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1206)
.|+++++.+..+... ..+. +..+..++.+++.+||++++||.||++.+++||||
T Consensus 160 ~f~~~~~~~~~~~~~---~~~~-----------------------~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 213 (1394)
T TIGR00956 160 DFAARCKTPQNRPDG---VSRE-----------------------EYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGG 213 (1394)
T ss_pred HHHHHhCCCCCCCCC---CCHH-----------------------HHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcc
Confidence 999887643211000 0000 01123456789999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEec
Q 000971 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1206)
Q Consensus 328 qkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G 407 (1206)
|||||+||++|+.+|+|+||||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+|++|++|+++|+|
T Consensus 214 erkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred cchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 99999999999999999999999999999999999999999987667899999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCcccc--
Q 000971 408 PRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKS-- 485 (1206)
Q Consensus 408 ~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~-- 485 (1206)
+++++.+||+++||.||++.++|||+++++++.++ +++... +.....++++++++|+.++.++++..+++.+.++.
T Consensus 294 ~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~-e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 371 (1394)
T TIGR00956 294 PADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGY-EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSE 371 (1394)
T ss_pred CHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccc-cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999987643 222211 11123578999999999887766655543221110
Q ss_pred -------------ccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccc
Q 000971 486 -------------KSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLT 552 (1206)
Q Consensus 486 -------------~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~ 552 (1206)
...+.....++|..++++|+++|++|.++.++||+..++.++++.+++|+++|++|++.+.+. .
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~ 448 (1394)
T TIGR00956 372 SDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---S 448 (1394)
T ss_pred hhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---h
Confidence 000112234568899999999999999999999999999999999999999999999987543 3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCc
Q 000971 553 DGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPN 632 (1206)
Q Consensus 553 ~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~ 632 (1206)
+...+.|++||++++.+|.++.++...+.+||+|+|||..++|++++|++|++++++|+.++.+++|++++|||+|+.++
T Consensus 449 ~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~ 528 (1394)
T TIGR00956 449 DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRT 528 (1394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCccc
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccc------------------cchhhHHHHHHhhCHHHHHHHHHH
Q 000971 633 AGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIV 694 (1206)
Q Consensus 633 ~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~------------------~~i~~~~~W~~~isp~~y~~~al~ 694 (1206)
+++||.|+++++++.+++.+++++++++++++..|+.+ ++||+||+|++|+||++|++++++
T Consensus 529 ~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~ 608 (1394)
T TIGR00956 529 AGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLM 608 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999998877544 789999999999999999999999
Q ss_pred HHHhcCCccccc---CC-------------C--------CccchhHHHhhc-cCcccchhhHHHHHHHHHHHHHHHHHHH
Q 000971 695 ANEFLGYSWKKF---TP-------------N--------SYESIGVQVLKS-RGFFAHAYWYWLGLGALFGFILLFNLGF 749 (1206)
Q Consensus 695 ~nef~~~~~~~~---~~-------------~--------~~~~~g~~~L~~-~~~~~~~~~~w~~~g~l~g~~~~f~~~~ 749 (1206)
.|||.+..+.|. +. | .....|.++|.. +++. ..|+|++++++++|+++|.++.
T Consensus 609 ~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~--~~~~w~n~gil~~~~v~f~~~~ 686 (1394)
T TIGR00956 609 VNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYY--NSHKWRNFGIIIGFTVFFFFVY 686 (1394)
T ss_pred HhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcc--cchhhHHHHHHHHHHHHHHHHH
Confidence 999999998874 11 0 123578899984 4554 4689999999999999999999
Q ss_pred HHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCCccCCCCCccchhhhcccCCCCCCCCCcCCCCCcEE
Q 000971 750 TMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSL 829 (1206)
Q Consensus 750 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 829 (1206)
+++++|.++......++..+....... .....+......+.++...... .. ...+.+...... ..........+
T Consensus 687 ~l~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~~~l 760 (1394)
T TIGR00956 687 ILLTEFNKGAKQKGEILVFRRGSLKRA--KKAGETSASNKNDIEAGEVLGS-TD--LTDESDDVNDEK-DMEKESGEDIF 760 (1394)
T ss_pred HHHHHhccccCCCCceEeeccccccch--hhcccccccccccccccccCCC-Cc--cccccccccccc-cccccCCCceE
Confidence 999999986554433322111000000 0000000000000000000000 00 000000000000 00000112358
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC-eeEEEEEEcCccCC
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYPKK 908 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~ 908 (1206)
+|+||+|.++.+ .+++.+|+|||++++||+++||||||||||||||++|+|+.++| +.+|+|.+||.+..
T Consensus 761 ~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~ 831 (1394)
T TIGR00956 761 HWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD 831 (1394)
T ss_pred EEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence 999999988532 12457999999999999999999999999999999999987654 34699999999875
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHH
Q 000971 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1206)
Q Consensus 909 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqr 988 (1206)
. .+++.+|||+|+|.+++.+||+|+|.|++.++.+...+.++++++++++++.++|.+++|+.+|.++. +||||||||
T Consensus 832 ~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqR 909 (1394)
T TIGR00956 832 S-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKR 909 (1394)
T ss_pred h-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhH
Confidence 3 46778999999999999999999999999988776666777788899999999999999999987653 899999999
Q ss_pred HHHHHHHhhCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 989 LTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 989 l~ia~aL~~~P~-iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
|+||+||+.+|+ ||||||||||||+.++..|+++|++++++|+|||||+|||+..+++.||++++|++||+++|+|+.+
T Consensus 910 l~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 910 LTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 999999999997 9999999999999999999999999988899999999999976788999999999988999999999
Q ss_pred cchhHHHHHHHhCCCcccCCCCCCccceeeeeeccchhhhcCCCHHHHHhhcHHHHHHHHHHHHhcCCCCCCC---CCCC
Q 000971 1068 RHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSK---DLYF 1144 (1206)
Q Consensus 1068 ~~~~~~~~yf~~~~g~~~~~~~~npa~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~ 1144 (1206)
++++++++||+.+ |.++||+++|||||+||+++.+.+.....+|.+.|+.|++++...+.++.+..+....+ +...
T Consensus 990 ~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1394)
T TIGR00956 990 ENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDA 1068 (1394)
T ss_pred cccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCcccccccc
Confidence 9999999999986 66679999999999999998755444456899999999988776665555433221111 1112
Q ss_pred CCccCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcC
Q 000971 1145 PTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTLKEPRS 1205 (1206)
Q Consensus 1145 ~~~~~~~~~~q~~~l~~r~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~ 1205 (1206)
..+|++||++|+++|++|+++++||||.|+++|+++++++|+++|++||+++++..++|++
T Consensus 1069 ~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~ 1129 (1394)
T TIGR00956 1069 LSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQ 1129 (1394)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 2468999999999999999999999999999999999999999999999999998887764
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-78 Score=743.86 Aligned_cols=567 Identities=31% Similarity=0.503 Sum_probs=471.8
Q ss_pred CCcceEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCCCcccceEeeceeeeEeCCeEEEEEcCCCCcHHH
Q 000971 114 LPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTT 193 (1206)
Q Consensus 114 ~p~~~v~f~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKST 193 (1206)
...++++|+|+++++... . +..+++|+||||.++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~-~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------S-KKTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------C-CccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 456789999999997632 1 14578999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhc
Q 000971 194 LLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273 (1206)
Q Consensus 194 LL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1206)
||++|+|+......++|+|++||++.+....++.+|||.|+|.++|+|||+|||.|+|.++-+.. +.
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~------ 138 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LS------ 138 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CC------
Confidence 99999999987667899999999887777777899999999999999999999999999876532 11
Q ss_pred CCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCC
Q 000971 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTG 353 (1206)
Q Consensus 274 ~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsg 353 (1206)
.++.+.+++.+++.|||.+|+||+||+...|||||||||||+||..|+.+|+|||+||||||
T Consensus 139 ------------------~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 139 ------------------KEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ------------------HHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 12345678999999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHH
Q 000971 354 LDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1206)
Q Consensus 354 LDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl 433 (1206)
|||.++.++++.|+++|+. ++|+|++||||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999986 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCccccccccccccccccccchHHHHHHHHHHHH
Q 000971 434 QEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISREL 513 (1206)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~ 513 (1206)
.++.+..+..+..... .........++......+............ .........++|.|+..+++|.+
T Consensus 280 l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~q~~~L~~R~~ 348 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLEALEKSLSTS-----KKVEIGTSPSWWTQFKILLKRSL 348 (613)
T ss_pred HHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHHHHhhhcccc-----cccccccCCcHHHHHHHHHHHHh
Confidence 9988743110000000 000000011100000000000000000000 00000116789999999999999
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHHHHH-HHHHHhhcchhhhhhccc
Q 000971 514 LLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLA-EISMTIAKLPVFYKQRDF 592 (1206)
Q Consensus 514 ~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~-~~~~~~~~~~vf~kqr~~ 592 (1206)
..++|++.+...+.++.+.+++++|++|++.+.+.... ....|++||.+.+..|..+. .+.....++++|.||+..
T Consensus 349 ~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~ 425 (613)
T KOG0061|consen 349 KNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSS 425 (613)
T ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999986544322 25678888888888776666 578888999999999999
Q ss_pred CCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccc--
Q 000971 593 RFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF-- 670 (1206)
Q Consensus 593 ~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~-- 670 (1206)
++|+.++|++++.+.++|+.++.+++|.+++|||+|+.++..+|+.+.+++++..+++.++..+++++.++...+..+
T Consensus 426 ~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~ 505 (613)
T KOG0061|consen 426 GLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGP 505 (613)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976655443
Q ss_pred ----------------cchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCC--CCccchhHHHhhccCcccchhhHH
Q 000971 671 ----------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTP--NSYESIGVQVLKSRGFFAHAYWYW 732 (1206)
Q Consensus 671 ----------------~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~~L~~~~~~~~~~~~w 732 (1206)
+.||.||+|+.|+|++.|++++++.|||.+....|... ..+...|.+++...++... ..|
T Consensus 506 ~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ 583 (613)
T KOG0061|consen 506 VLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SFW 583 (613)
T ss_pred HHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--ccc
Confidence 68999999999999999999999999999744455443 3456778999998888654 468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 000971 733 LGLGALFGFILLFNLGFTMAITFLN 757 (1206)
Q Consensus 733 ~~~g~l~g~~~~f~~~~~l~l~~~~ 757 (1206)
.++.++++++++|.++.++++.+..
T Consensus 584 ~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 584 LDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998753
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-78 Score=749.87 Aligned_cols=551 Identities=27% Similarity=0.414 Sum_probs=459.9
Q ss_pred cccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCC
Q 000971 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1206)
+.+++||+|+|+.++|||+++|+|||||||||||++|+|+.++....+|+|.+||.+++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 44578999999999999999999999999999999999998875556899999999886544467899999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc-
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM- 320 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 320 (1206)
||+|||.|+++++.+.... + ++....++.+++.+||.+++||.||+..
T Consensus 115 TV~e~l~f~~~~~~~~~~~-------~------------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVT-------K------------------------KEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCCC-------H------------------------HHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 9999999998876432110 0 0123357889999999999999999864
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.++|||||||||+||++|+.+|+|+||||||+|||+.++.++++.|+++++ .++|+|+++|||+.+++++||+|++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999876 5889999999999999999999999999
Q ss_pred CeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhcC
Q 000971 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1206)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~ 480 (1206)
|+++|+|+++++.+||+++||+||++.+++||+.++++...... .. .....+++.+.|+.+...++.......
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE-----NE--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccc-----cc--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 99999999999999999999999999999999999887533211 00 011234556666655544433322221
Q ss_pred Cccccc---cccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhH
Q 000971 481 PFDKSK---SHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIY 557 (1206)
Q Consensus 481 ~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~ 557 (1206)
...... ..........|..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+. .+....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 110000 00011122457789999999999999999999999999999999999999999999976543 234456
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHH
Q 000971 558 AGALFFATAMVMFNGLAE-ISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRF 636 (1206)
Q Consensus 558 ~g~lff~~~~~~~~~~~~-~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f 636 (1206)
.|++|+.++..+|.++.. +.....++++|+||+..++|++++|+++++++++|+.++.+++|++++|||+|+.+++.+|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 788999988888876544 4556679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccc------------------cchhhHHHHHHhhCHHHHHHHHHHHHHh
Q 000971 637 FKQYLLFLAVNQMASALFRLIAATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEF 698 (1206)
Q Consensus 637 f~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~------------------~~i~~~~~W~~~isp~~y~~~al~~nef 698 (1206)
|.++++++++.+++.+++.+++++++++..|..+ ++||+||+|++|+||++|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988766543 7899999999999999999999999999
Q ss_pred cCCcc-cccCCC---CccchhHHHhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000971 699 LGYSW-KKFTPN---SYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFL 756 (1206)
Q Consensus 699 ~~~~~-~~~~~~---~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~ 756 (1206)
.+..+ .|...+ .+...|.++|+.+++... ++|.+++++++++++|.++.++++++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98775 443211 133468999999988664 469999999999999999999999864
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-77 Score=742.81 Aligned_cols=594 Identities=21% Similarity=0.329 Sum_probs=452.4
Q ss_pred CCCcceEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCCCcccceEeeceeeeEeCCeEEEEEcCCCCcHH
Q 000971 113 DLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKT 192 (1206)
Q Consensus 113 ~~p~~~v~f~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKS 192 (1206)
..++++++|.|+++.+.......+... +...+...-...+ ...+...+++|+|||+.++|||+++|+||||||||
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~-l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKS 108 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISD-ETRQIQERTILNGVTGMASPGEILAVLGPSGSGKS 108 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccc----ccccccccccccc-ccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHH
Confidence 345899999999999764310111111 0110000000000 01112346799999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhh
Q 000971 193 TLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENE 272 (1206)
Q Consensus 193 TLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (1206)
|||++|+|++++. ..+|+|.+||+++... .++.++||+|+|.+++.+||+||+.|++.++.+... ..
T Consensus 109 TLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~-------~~---- 175 (659)
T PLN03211 109 TLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL-------TK---- 175 (659)
T ss_pred HHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC-------CH----
Confidence 9999999998764 3589999999987532 235689999999999999999999998765422100 00
Q ss_pred cCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCC
Q 000971 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEIST 352 (1206)
Q Consensus 273 ~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEpts 352 (1206)
++....++++++.+||++++||.||+...++|||||||||+||++|+.+|+||+|||||+
T Consensus 176 --------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPts 235 (659)
T PLN03211 176 --------------------QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 235 (659)
T ss_pred --------------------HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCC
Confidence 112234678999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHH
Q 000971 353 GLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADF 432 (1206)
Q Consensus 353 gLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adf 432 (1206)
|||+.++.++++.|+++++ .++|+|+++|||..+++++||+|++|++|+++|+|+++++.+||+++||.||++.|||||
T Consensus 236 gLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf 314 (659)
T PLN03211 236 GLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADF 314 (659)
T ss_pred CcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHH
Confidence 9999999999999999876 578999999999888999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhcC---Cccccc-----cccc-cccccccccchHH
Q 000971 433 LQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT---PFDKSK-----SHRA-ALTTEVYGAGKRE 503 (1206)
Q Consensus 433 l~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~---~~~~~~-----~~~~-~~~~~~~~~s~~~ 503 (1206)
+.++++.....+.....+.+ ...+++.+.|++.. ..+..+.... ...... .... ......+..+++.
T Consensus 315 ~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 390 (659)
T PLN03211 315 LLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFN 390 (659)
T ss_pred HHHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHH
Confidence 99998764321100000111 11233334443211 1111111000 000000 0000 0011234568999
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 000971 504 LLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMF-NGLAEISMTIAK 582 (1206)
Q Consensus 504 ~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~-~~~~~~~~~~~~ 582 (1206)
|+..+++|.++. +|+..+...|+++.+++|+++|++|++.+ ..+.+.+.|++||.+++.++ ..+..+.....+
T Consensus 391 Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~e 464 (659)
T PLN03211 391 QFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQE 464 (659)
T ss_pred HHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888 78887778999999999999999999874 12345678999999877655 455677777889
Q ss_pred chhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000971 583 LPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGR 662 (1206)
Q Consensus 583 ~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~ 662 (1206)
+++|+||+..++|++++|+++++++++|+.++.+++|++++|||+|+.+++.+||.|+++++++.+++.+++.+++++++
T Consensus 465 r~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~ 544 (659)
T PLN03211 465 RAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIM 544 (659)
T ss_pred hHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccc----------------cchhhHHHHHHhhCHHHHHHHHHHHHHhcCCc-----ccccCCCCccchhHHHhhc
Q 000971 663 SMVVANTF----------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYS-----WKKFTPNSYESIGVQVLKS 721 (1206)
Q Consensus 663 s~~~a~~~----------------~~i~~~~~W~~~isp~~y~~~al~~nef~~~~-----~~~~~~~~~~~~g~~~L~~ 721 (1206)
++..|+.+ .+||+||+|++|+||++|++++++.|||.+.+ ..|.........+..++..
T Consensus 545 ~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~ 624 (659)
T PLN03211 545 DAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEE 624 (659)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchh
Confidence 88777543 68999999999999999999999999997643 2343211101111112222
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000971 722 RGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLN 757 (1206)
Q Consensus 722 ~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~ 757 (1206)
..+. ....|.+++++++++++|.++.++++++.+
T Consensus 625 ~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 625 DVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 234788999999999999999999987653
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-76 Score=776.35 Aligned_cols=580 Identities=22% Similarity=0.380 Sum_probs=476.7
Q ss_pred CCCCCcceEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCCCcccceEeeceeeeEeCCeEEEEEcCCCCc
Q 000971 111 GIDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASG 190 (1206)
Q Consensus 111 ~~~~p~~~v~f~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsG 190 (1206)
.++..++.+.|+||++.++.....+ ....+..++.+|+|||+.++||++++|+||||||
T Consensus 860 ~~~~~~~~~~~~~v~y~v~~~~~~~---------------------~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaG 918 (1470)
T PLN03140 860 VLPFTPLAMSFDDVNYFVDMPAEMK---------------------EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAG 918 (1470)
T ss_pred ccCCCcceEEEEEEEEEEccCcccc---------------------ccccCcCCceEeeCcEEEEECCeEEEEECCCCCC
Confidence 3456677899999999986431100 0011123467999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHh
Q 000971 191 KTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE 270 (1206)
Q Consensus 191 KSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~ 270 (1206)
|||||++|+|+.++. .++|+|.+||++.+....++.++||+|+|.|++.+||+|||.|++.++.+... .
T Consensus 919 KTTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~-------~--- 987 (1470)
T PLN03140 919 KTTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV-------S--- 987 (1470)
T ss_pred HHHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC-------C---
Confidence 999999999997642 46899999998875433456799999999999999999999998765422110 0
Q ss_pred hhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHHhcCCccceeecC
Q 000971 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEI 350 (1206)
Q Consensus 271 ~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEp 350 (1206)
..+....++++++.+||.+++|+.||+..+++|||||||||+||++|+.+|+|||||||
T Consensus 988 ---------------------~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEP 1046 (1470)
T PLN03140 988 ---------------------KEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEP 1046 (1470)
T ss_pred ---------------------HHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 00122357889999999999999999888889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC-CeEEEecCh----HHHHHHHHhc-CC-CC
Q 000971 351 STGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD-GQIVYQGPR----ELVLEFFESM-GF-KC 423 (1206)
Q Consensus 351 tsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~c 423 (1206)
|+|||+.++..+++.|+++++ .++|+|+++|||..+++++||++++|++ |+++|+||. +++.+||+++ |+ +|
T Consensus 1047 TsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~ 1125 (1470)
T PLN03140 1047 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKI 1125 (1470)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCC
Confidence 999999999999999999876 5789999999998889999999999996 899999996 6899999997 66 49
Q ss_pred CCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCccccccccccccccccccchHH
Q 000971 424 PKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRE 503 (1206)
Q Consensus 424 p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~ 503 (1206)
|+..|||||+.++++..... ....++.+.|+.++.+++..+.+..................|..+++.
T Consensus 1126 p~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 1193 (1470)
T PLN03140 1126 KEKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWG 1193 (1470)
T ss_pred CCCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHH
Confidence 99999999999998653211 112467788887776655443332111000011111123568899999
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHHHHHH-HHHHhhc
Q 000971 504 LLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAE-ISMTIAK 582 (1206)
Q Consensus 504 ~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~-~~~~~~~ 582 (1206)
|++.|++|+++.+|||+.+...|+++.+++|+++|++||+.+.+..+..+.....|++|+++++..+..+.. ++....+
T Consensus 1194 Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~e 1273 (1470)
T PLN03140 1194 QFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVE 1273 (1470)
T ss_pred HHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997665555555567899999888877765544 4566679
Q ss_pred chhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000971 583 LPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGR 662 (1206)
Q Consensus 583 ~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~ 662 (1206)
|++|+|||..++|++++|+++++++++|+.++.+++|.+++|||+|+.++++.||.++++++++.+++.+++.+++++++
T Consensus 1274 R~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p 1353 (1470)
T PLN03140 1274 RTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTP 1353 (1470)
T ss_pred HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccc------------------cchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCC-ccchhHHH-hhcc
Q 000971 663 SMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNS-YESIGVQV-LKSR 722 (1206)
Q Consensus 663 s~~~a~~~------------------~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~-~~~~g~~~-L~~~ 722 (1206)
+..+|..+ ++||+||+|+||+||+.|++++++.|||.+....|.+++. ....+.++ +..+
T Consensus 1354 ~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1433 (1470)
T PLN03140 1354 NQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHY 1433 (1470)
T ss_pred cHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhc
Confidence 98877543 7899999999999999999999999999998776654431 12345555 5677
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000971 723 GFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQ 758 (1206)
Q Consensus 723 ~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~ 758 (1206)
||.. .|.|.+++++++|+++|.+++.+++++++.
T Consensus 1434 g~~~--~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1434 GYDP--DFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred CcCc--ccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 8864 478999999999999999999999999875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-74 Score=709.79 Aligned_cols=768 Identities=20% Similarity=0.260 Sum_probs=413.8
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1206)
+..||+|+|+.|++|+.++|+|||||||||+++.|.++++|+ +|+|.++|.++.++.. +..+|.|+|+|.+|.
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~- 440 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA- 440 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhhc-
Confidence 577999999999999999999999999999999999999998 9999999999988765 368999999997665
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
.||+||+.|+.. |...+...+++ +.++..--+..|++..||.||+++
T Consensus 441 ~tI~eNI~~G~~-------------------------dat~~~i~~a~--------k~ana~~fi~~lp~g~~T~vge~g 487 (1228)
T KOG0055|consen 441 TTIRENIRYGKP-------------------------DATREEIEEAA--------KAANAHDFILKLPDGYDTLVGERG 487 (1228)
T ss_pred ccHHHHHhcCCC-------------------------cccHHHHHHHH--------HHccHHHHHHhhHHhhcccccCCC
Confidence 699999999632 11112222221 112222335568889999999988
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
+ .|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|++.. .++|+|+ +.|....+-+ +|+|++|++
T Consensus 488 ~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTiv-VaHRLStIrn-aD~I~v~~~ 562 (1228)
T KOG0055|consen 488 V-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIV-VAHRLSTIRN-ADKIAVMEE 562 (1228)
T ss_pred C-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEE-Eeeehhhhhc-cCEEEEEEC
Confidence 7 499999999999999999999999999999999999999999998864 4677777 4455555544 999999999
Q ss_pred CeEEEecChHHHHHHHHhcCCCCCCCCChhHHH--HhhcCccchhhhhcccCCCCccCCHHHHHHHHHhch----hhhh-
Q 000971 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFL--QEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFH----VGQK- 473 (1206)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl--~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~- 473 (1206)
|+||+.|+++|++.. -| -.++.+ |+.....+. ..+..+ ..++.....+.+. ....
T Consensus 563 G~IvE~G~h~ELi~~---~G-------~Y~~lv~~Q~~~~~~~~-~~~~~~-------~~~~~~~s~~~s~~~~~~~~~~ 624 (1228)
T KOG0055|consen 563 GKIVEQGTHDELIAL---GG-------IYSSLVRLQELEKAAED-EEEEES-------LKEERSRSLKSSSSSPSLSRGS 624 (1228)
T ss_pred CEEEEecCHHHHHhc---cc-------hHHHHHHHHhhhhhhhc-cccccc-------hhhhhhhccccccccccccCCc
Confidence 999999999999852 01 111111 111111110 000000 0000000000000 0000
Q ss_pred hHHhhc-CCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHH-------HHHHHHHHHHHHHHHHhccC
Q 000971 474 ISDELR-TPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIF-------KLTQISSVALAFMTLFLRTK 545 (1206)
Q Consensus 474 ~~~~l~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~-------~~~~~~~~ali~gt~f~~~~ 545 (1206)
...... ...+..... ..........++++.++. .+.++...+. +.....+++++++.++--..
T Consensus 625 ~~~~~~~~~~~~e~~~-~~~~~~~~~~s~~~i~k~--------~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~ 695 (1228)
T KOG0055|consen 625 NRSNLLSVKPEGEDPE-EPVSEEDEKVSFWRIFKL--------NKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFY 695 (1228)
T ss_pred cccccccccccccccc-cccccccccccHHHHHHh--------ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 000000 000000000 000111123344444433 3333333322 22333445555555443222
Q ss_pred CCC-CccccchhHHHHHHHHHHHHH----------HHHHHHHHHHhhcchhhhh--hcccCCcChhh--HHHHHHH-HHh
Q 000971 546 MHK-HSLTDGGIYAGALFFATAMVM----------FNGLAEISMTIAKLPVFYK--QRDFRFFPPWA--YAIPSWI-LKI 609 (1206)
Q Consensus 546 ~~~-~~~~~~~~~~g~lff~~~~~~----------~~~~~~~~~~~~~~~vf~k--qr~~~~y~~~a--~~la~~i-~~i 609 (1206)
... +........+.++|.++.... |.-+.+....--+...|.+ ..+..||.--- -.+.+-+ .+.
T Consensus 696 ~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da 775 (1228)
T KOG0055|consen 696 PPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDA 775 (1228)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcch
Confidence 111 111111122444444333221 1112222211112222322 12223332111 1121111 111
Q ss_pred h---------HH----HHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh--------h-
Q 000971 610 P---------IS----FLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVV--------A- 667 (1206)
Q Consensus 610 P---------~~----~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~--------a- 667 (1206)
| ++ .+..++..+++-|..|.....- ...++-++........+++......... |
T Consensus 776 ~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv----~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~ 851 (1228)
T KOG0055|consen 776 SNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALV----VLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAI 851 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 1 11 1111111111111111100000 0000000011111111111111111000 0
Q ss_pred ccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHhhccCcccchhhHHHHHHHHHHHHHH---
Q 000971 668 NTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILL--- 744 (1206)
Q Consensus 668 ~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~~~--- 744 (1206)
-...+|.. --.+..+.-+.+.|...-- .+ .. ..... ..|.+++.-+...+.
T Consensus 852 eai~NIrT---------V~al~~e~~~~~~y~~~l~-----~p----~~------~~~~~--~~i~gl~f~~sqs~~~~~ 905 (1228)
T KOG0055|consen 852 EAVSNIRT---------VAALCAEEKFMELYKEELE-----KP----RK------SSFKR--GLISGLGFGFSQSLLFFV 905 (1228)
T ss_pred HHHHhHHH---------HHHHhhHHHHHHHHHHHHH-----HH----HH------HHHHH--HHHHHHHHHHHHHHHHHH
Confidence 00011110 0011112222222211000 00 00 00000 111111111111111
Q ss_pred HHHHHHHHHHhccccCCCcceeecccccc----cc-ccccccccccccCCCCCCCccCCCCCccc--hhhhcccCCCCCC
Q 000971 745 FNLGFTMAITFLNQLEKPRAVITEESESN----KQ-DNRIRGTVQLSARGESGEDISGRNSSSKS--LILTEAQGSHPKK 817 (1206)
Q Consensus 745 f~~~~~l~l~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 817 (1206)
+.+.++.+...... ........... .. ............+.. ....+.... .....+.-+....
T Consensus 906 ~A~~f~~G~~Li~~----g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~-----ka~~Aa~~iF~i~dr~~~i~~~~~ 976 (1228)
T KOG0055|consen 906 YALSFWYGARLISN----GEMTFEDVFRVFMALSFTAMALGQASSYAPDIS-----KAKIAAGSIFEILDRKPTIDPDST 976 (1228)
T ss_pred HHHHHHHhHHHHhc----CCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHH-----HHHHHHHHHHHHhcCCCCCCCCCC
Confidence 11111111111100 00000000000 00 000000000000000 000000000 0000000000111
Q ss_pred CCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeE
Q 000971 818 RGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT 897 (1206)
Q Consensus 818 ~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~ 897 (1206)
.+...|.....++|+||+|.||..+ ..+||+|+|++|++|+.+||||||||||||.+.+|-+..+ +..
T Consensus 977 ~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~ 1044 (1228)
T KOG0055|consen 977 SGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDA 1044 (1228)
T ss_pred CCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCC
Confidence 2223344456899999999998654 4679999999999999999999999999999999987766 458
Q ss_pred EEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC-------Ccc
Q 000971 898 GNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-------LKP 967 (1206)
Q Consensus 898 G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~-------L~~ 967 (1206)
|.|.|||.+++. ...|+.+|.|.|+|.++. -|++||+.|+. . .++.+ .+.++++..+ |.+
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~----eIi~Aak~ANaH~FI~sLP~ 1114 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEE----EIIEAAKLANAHNFISSLPQ 1114 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHH----HHHHHHHHhhhHHHHhcCcC
Confidence 999999998765 346789999999999986 79999999981 1 13333 3566666554 445
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHh
Q 000971 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA 1047 (1206)
Q Consensus 968 ~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~ 1047 (1206)
-.|+.+|..|. .||||||||++|||||++||+||+|||.||+||+++.+.|+++|.+. ..|||.|+++|++| ..+.
T Consensus 1115 GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLS--TIqn 1190 (1228)
T KOG0055|consen 1115 GYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLS--TIQN 1190 (1228)
T ss_pred cccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchh--hhhc
Confidence 56788887664 79999999999999999999999999999999999999999999986 46999999999987 4678
Q ss_pred cCeEEEEecCcEEEEEcCC
Q 000971 1048 FDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1048 ~d~v~ll~~gg~~~~~g~~ 1066 (1206)
+|.|.++++ |+++..|+.
T Consensus 1191 aD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1191 ADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred CCEEEEEEC-CEEEecccH
Confidence 999999985 899999984
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-73 Score=722.55 Aligned_cols=763 Identities=20% Similarity=0.255 Sum_probs=448.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
.+.|+|||+.|++|++++|+||.|||||+||.+|.|+++.. +|+|.++| .+|||+|+++.+ +.|||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pWI~-ngTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPWIQ-NGTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccHhh-CCcHH
Confidence 34899999999999999999999999999999999999975 99999999 489999998555 56999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
|||.|+..+. ..||+.+.+.|..++|.+++|++| .|.||++++ +|
T Consensus 600 eNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIGErGi-nL 644 (1381)
T KOG0054|consen 600 ENILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTEIGERGI-NL 644 (1381)
T ss_pred HhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cceecCCcc-CC
Confidence 9999998765 378999999999999999999999 499999988 79
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHH-HHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~-~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
||||||||++|||++++++|++||+|.|++|+++..+|++ |++.+. .++|+|++.| .-+....+|.|++|++|+|
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTH--ql~~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTH--QLQFLPHADQIIVLKDGKI 720 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeC--chhhhhhCCEEEEecCCeE
Confidence 9999999999999999999999999999999999999995 886543 3466666544 4577888999999999999
Q ss_pred EEecChHHHHH---HHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhcC
Q 000971 404 VYQGPRELVLE---FFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1206)
Q Consensus 404 v~~G~~~~~~~---~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~ 480 (1206)
+..|+++|+.+ .|+.+ ...+......+ .+.++. ..+ ....+. +. +.........+. .
T Consensus 721 ~~~Gty~el~~~~~~~~~l-~~~~~~~~~~~-----~~~~~~-------~~~---~~~~~~-~~-~~~~~~~~~~~~-~- 780 (1381)
T KOG0054|consen 721 VESGTYEELLKSGGDFAEL-AHEEESEQEEE-----ASEKDL-------ESG---ESSRES-ES-RSLESLSSEEEK-S- 780 (1381)
T ss_pred ecccCHHHHHhcchhHHHH-hhccchhhccc-----cccccc-------ccc---ccccch-hh-hhhhhhcccccc-c-
Confidence 99999999883 33332 10000000000 000000 000 000000 00 000000000000 0
Q ss_pred Cccccccccc-cccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHH-HHHHHHHHHHhccCCCCC---cc--cc
Q 000971 481 PFDKSKSHRA-ALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQIS-SVALAFMTLFLRTKMHKH---SL--TD 553 (1206)
Q Consensus 481 ~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~-~~ali~gt~f~~~~~~~~---~~--~~ 553 (1206)
...+....+. .......+.-.|...+ +.+.....-....++-+.... .+..+.+..|+..+.+.. .. .+
T Consensus 781 ~~~~~~~~~~~~~ee~~~G~v~~~vY~----~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~ 856 (1381)
T KOG0054|consen 781 KDEKEEEDKLVQEEERETGKVSWSVYK----KYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVS 856 (1381)
T ss_pred ccccchhhHHHHHHHHhcCEeeHHHHH----HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCC
Confidence 0000000000 0000001111111111 111110111111111111111 122223333333332221 10 12
Q ss_pred chhHHH----HHHHHHHHHHHHHHHHHHHH--------------h--hcchhhhhhcccCCcChhhHHHHHHHHHhhHHH
Q 000971 554 GGIYAG----ALFFATAMVMFNGLAEISMT--------------I--AKLPVFYKQRDFRFFPPWAYAIPSWILKIPISF 613 (1206)
Q Consensus 554 ~~~~~g----~lff~~~~~~~~~~~~~~~~--------------~--~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~ 613 (1206)
...|.+ ..+...++.++.++.-.... + +....|.....++..+.++..+..+...+|..+
T Consensus 857 ~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~ 936 (1381)
T KOG0054|consen 857 TSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTL 936 (1381)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHH
Confidence 222222 22222222222222111111 1 123356666777888888999999999999877
Q ss_pred HHHHHHHhhhhhhccCCCcHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCH
Q 000971 614 LEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLA--------VNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSP 685 (1206)
Q Consensus 614 ~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l--------~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp 685 (1206)
...+...+.+-..++....+...|....+.+. ....++.-.+.+.+++++++.++.-+++.+.+..-
T Consensus 937 ~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIR----- 1011 (1381)
T KOG0054|consen 937 EFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIR----- 1011 (1381)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceee-----
Confidence 66554444333333322222222222221111 12234445566788899998887654443322110
Q ss_pred HHHHHHHHHHHHhcCCc-------ccccCCCCccchhHHHhhccCcccchhhHHH-----HHHHHHHHHHHHHHHHHHHH
Q 000971 686 MSYAQNAIVANEFLGYS-------WKKFTPNSYESIGVQVLKSRGFFAHAYWYWL-----GLGALFGFILLFNLGFTMAI 753 (1206)
Q Consensus 686 ~~y~~~al~~nef~~~~-------~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~-----~~g~l~g~~~~f~~~~~l~l 753 (1206)
+|..+.....++...- +.....+.|.....+.+...-+........+ .-..++|+.+.|.+..+-.+
T Consensus 1012 -Af~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l 1090 (1381)
T KOG0054|consen 1012 -AFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLL 1090 (1381)
T ss_pred -eccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHH
Confidence 0111111111111000 0000000000000010000000000000000 00112222222222222222
Q ss_pred HhccccCCCcceeeccccccccccccccccccccCCCCCCCccCCCCCccchhhhcccCCCCCCCCCcCCCCC--cEEEE
Q 000971 754 TFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEP--HSLTF 831 (1206)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~ 831 (1206)
.|.- +...+.+....+.|+....... ..+.+ .........+.+| +.++|
T Consensus 1091 ~~~v----------------------R~~~elEn~m~SVERv~eY~~~-----~~E~p--~~~~~~~pp~~WP~~G~I~f 1141 (1381)
T KOG0054|consen 1091 QWLV----------------------RQSSELENNMVSVERVLEYTDI-----PSEAP--LEIEESRPPPSWPSKGEIEF 1141 (1381)
T ss_pred HHHH----------------------HHHHHHHhcchhhhHHHHHhcC-----CCCCC--CCCcCCCCCCCCCCCCeEEE
Confidence 2211 1111111111122221111000 00100 0010110112223 47999
Q ss_pred EeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc--
Q 000971 832 DEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-- 909 (1206)
Q Consensus 832 ~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-- 909 (1206)
+|++.+|.- +-..||+|||+.|+|||++||+|++|||||||+++|.+...+ .+|+|.|||.++.+
T Consensus 1142 ~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgvdI~~ig 1208 (1381)
T KOG0054|consen 1142 EDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGVDISKIG 1208 (1381)
T ss_pred EEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCeeccccc
Confidence 999877641 223699999999999999999999999999999999987663 57999999998765
Q ss_pred -ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccC------CCCCCCCC
Q 000971 910 -ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG------LPGVSGLS 982 (1206)
Q Consensus 910 -~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g------~~~~~~LS 982 (1206)
...|++++.+||+|.++. -|+|.|| |+..+..++.++++||.++|.+...++.+ .+++.++|
T Consensus 1209 L~dLRsrlsIIPQdPvLFs-GTvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~S 1277 (1381)
T KOG0054|consen 1209 LHDLRSRLSIIPQDPVLFS-GTVRFNL----------DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFS 1277 (1381)
T ss_pred HHHHHhcCeeeCCCCceec-Ccccccc----------CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCC
Confidence 356788999999998765 3666655 67777788899999999999877655443 24567899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
.||||.+|+||||+++++||+|||+|+++|+++...|+++||+-.+ +||||++.|..+. + .-+|||+||++ |+++.
T Consensus 1278 vGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T-V-md~DrVlVld~-G~v~E 1353 (1381)
T KOG0054|consen 1278 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT-V-MDSDRVLVLDA-GRVVE 1353 (1381)
T ss_pred hHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch-h-hhcCeEEEeeC-CeEee
Confidence 9999999999999999999999999999999999999999999764 7999999999873 4 45799999996 79999
Q ss_pred EcCCC
Q 000971 1063 VGPLG 1067 (1206)
Q Consensus 1063 ~g~~~ 1067 (1206)
+|++.
T Consensus 1354 fdsP~ 1358 (1381)
T KOG0054|consen 1354 FDSPA 1358 (1381)
T ss_pred cCChH
Confidence 99873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-73 Score=702.73 Aligned_cols=543 Identities=24% Similarity=0.366 Sum_probs=449.0
Q ss_pred cccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCC
Q 000971 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1206)
.+++++|+||+|.++||.+|||||+|||||||||++|||+... ..++|+|.+||.+.++...+|.+|||.|+|.|.|++
T Consensus 801 G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 801 GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCccc
Confidence 3668899999999999999999999999999999999999764 368999999999998777789999999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||||.|.|+|.++.+.+. . .++....+|++++.|+|++++|.+||+.+
T Consensus 880 TVrESL~fSA~LRlp~~v-------~------------------------~~ek~~yVe~Vi~lleL~~~~daiVG~~G- 927 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEV-------S------------------------DEEKYEYVEEVIELLELKEYADALVGLPG- 927 (1391)
T ss_pred chHHHHHHHHHHcCCCcC-------C------------------------HHHHHHHHHHHHHHhCchhhhhhhccCCC-
Confidence 999999999988754321 1 12233578999999999999999999988
Q ss_pred ccCChhhhhHHHHHHHHhcCC-ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc-
Q 000971 322 RGISGGERKRVTTGEMMVGPA-LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS- 399 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~-~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~- 399 (1206)
+|||.+||||++||..|+.+| .||||||||||||+.++..|++.+|++++ .|+|++|+||||+..+++.||++++|.
T Consensus 928 ~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkr 1006 (1391)
T KOG0065|consen 928 SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKR 1006 (1391)
T ss_pred CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhc
Confidence 899999999999999999999 99999999999999999999999999997 789999999999999999999999997
Q ss_pred CCeEEEecCh----HHHHHHHHhcC-CCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhh
Q 000971 400 DGQIVYQGPR----ELVLEFFESMG-FKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKI 474 (1206)
Q Consensus 400 ~G~iv~~G~~----~~~~~~f~~~G-~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 474 (1206)
.|++||.||. +.+++||++.| .+||+..|||||+.++++...+.. ...++++.|+++..+++.
T Consensus 1007 GGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~ 1074 (1391)
T KOG0065|consen 1007 GGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRN 1074 (1391)
T ss_pred CCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHH
Confidence 5799999996 45778999987 899999999999999987643321 123788899998888777
Q ss_pred HHhh---cCCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 000971 475 SDEL---RTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSL 551 (1206)
Q Consensus 475 ~~~l---~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~ 551 (1206)
.+++ ..+... .........+|..++|.|++.|++|++...||++...+.|++..++.++++|..||+.+ ++.
T Consensus 1075 ~e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g---~~~ 1149 (1391)
T KOG0065|consen 1075 KELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG---HNV 1149 (1391)
T ss_pred HHHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC---CcH
Confidence 6544 333322 12223345568999999999999999999999999999999999999999999999987 345
Q ss_pred ccchhHHHHHHHHHHHHHHH-HHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCC
Q 000971 552 TDGGIYAGALFFATAMVMFN-GLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCD 630 (1206)
Q Consensus 552 ~~~~~~~g~lff~~~~~~~~-~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~ 630 (1206)
++.+..++++|.++++...+ .-......-.++-+++||+..++|+..+|.++.+++++|+.++..++|.++.||++||.
T Consensus 1150 q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~ 1229 (1391)
T KOG0065|consen 1150 QGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFY 1229 (1391)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccch
Confidence 56666777777766654432 22233444567889999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccc------------------cchhhHHHHHHhhCHHHHHHHH
Q 000971 631 PNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNA 692 (1206)
Q Consensus 631 ~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~------------------~~i~~~~~W~~~isp~~y~~~a 692 (1206)
.++.+|+.+++..++..+....++.++.+++|+...|..+ +.||.||+|+||+||+.|..++
T Consensus 1230 ~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~g 1309 (1391)
T KOG0065|consen 1230 WTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEG 1309 (1391)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHH
Confidence 9999999999999999999999999999999988766433 7899999999999999999999
Q ss_pred HHHHHhcCCcccccCCC-------CccchhHHHhhccC----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000971 693 IVANEFLGYSWKKFTPN-------SYESIGVQVLKSRG----FFAHAYWYWLGLGALFGFILLFNLGFTMAITFLN 757 (1206)
Q Consensus 693 l~~nef~~~~~~~~~~~-------~~~~~g~~~L~~~~----~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~ 757 (1206)
++...+++..-.|...+ ...+.|..+-..++ +..+... ....+.++|.+.+.+++.+.+.|.+
T Consensus 1310 li~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a--~~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1310 LISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLA--TTACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred HHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcc--eeEEEEeeeehHHHHHHHHHHHHHH
Confidence 99999998877765332 22345554444444 3322110 0112234455666666666666553
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=706.04 Aligned_cols=216 Identities=27% Similarity=0.404 Sum_probs=189.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++. .++.+|+|||+.|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 4889999988741 125699999999999999999999999999999999998764 489999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 908 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+.+|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2235679999999999999999999998776653 334445667899999999999988875 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|||+++ ++...|||+++|.+ |++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999987 68889999999985 79999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 2154 ~ 2154 (2272)
T TIGR01257 2154 I 2154 (2272)
T ss_pred H
Confidence 5
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-69 Score=718.46 Aligned_cols=541 Identities=25% Similarity=0.344 Sum_probs=438.3
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1206)
.+.+|+|||+.++||++++|+|||||||||||++|+|+.++....+|+|.+||+++.. ..++.++||+|+|.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 3579999999999999999999999999999999999987422237999999999853 235789999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+|||.|+++++.+... . ..+....++++++.+||.+++|+.||+... +
T Consensus 854 ~E~L~~~a~l~~~~~~-------~------------------------~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~ 901 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSV-------S------------------------KSEKMEYVEEVIKLLEMESYADAVVGVPGE-G 901 (1394)
T ss_pred HHHHHHHHHhCCCCCC-------C------------------------HHHHHHHHHHHHHHcCChhhCCCeeCCCCC-C
Confidence 9999998876532110 0 011233578899999999999999997544 8
Q ss_pred CChhhhhHHHHHHHHhcCCc-cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC-
Q 000971 324 ISGGERKRVTTGEMMVGPAL-ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG- 401 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~-vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G- 401 (1206)
|||||||||+||++|+.+|+ ||||||||+|||+.++..+++.|+++++ .++|+|+++|||...+++.||+|++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999997 9999999999999999999999999875 57899999999988888999999999997
Q ss_pred eEEEecCh----HHHHHHHHhcCC-CCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHH
Q 000971 402 QIVYQGPR----ELVLEFFESMGF-KCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISD 476 (1206)
Q Consensus 402 ~iv~~G~~----~~~~~~f~~~G~-~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 476 (1206)
+++|+|+. +++.+||+++|+ +||++.|||||+.++.+...... ..+++.+.|+.+...+...+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHH
Confidence 99999997 678999999996 99999999999999876532110 01234555555544433322
Q ss_pred hh---cCCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccc
Q 000971 477 EL---RTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTD 553 (1206)
Q Consensus 477 ~l---~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~ 553 (1206)
++ ..+...............|..+++.|++.+++|.++.++|++.+...|+++.+++|+++|++|++.+.+ ..+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~---~~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHH
Confidence 22 111110000000112246889999999999999999999999999999999999999999999998753 234
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcchh-hhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCc
Q 000971 554 GGIYAGALFFATAMVMFNGLAEISMTIAKLPV-FYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPN 632 (1206)
Q Consensus 554 ~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~v-f~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~ 632 (1206)
.+...|++|+.+++..+.....++..+..+++ |+|||..++|+.++|+++++++++|+.++.+++|.+++|||+|+.++
T Consensus 1126 i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 55677888887766555444445555666666 59999999999999999999999999999999999999999999988
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccc------------------cchhhHHHHHHhhCHHH
Q 000971 633 AGR-------FFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF------------------EDIKKWWKWAYWCSPMS 687 (1206)
Q Consensus 633 ~~~-------ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~------------------~~i~~~~~W~~~isp~~ 687 (1206)
+.. ||.++++++++.+++.++..++++++++..+|..+ ++||.||+|++|+||+.
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 765 99999999999999999999999999987766433 68999999999999999
Q ss_pred HHHHHHHHHHhcCCcccccCC------------C----------------------Cc----cchhHHHhhccCcccchh
Q 000971 688 YAQNAIVANEFLGYSWKKFTP------------N----------------------SY----ESIGVQVLKSRGFFAHAY 729 (1206)
Q Consensus 688 y~~~al~~nef~~~~~~~~~~------------~----------------------~~----~~~g~~~L~~~~~~~~~~ 729 (1206)
|++++++.|||.+....|... | .+ ...|.++|..+++...
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~-- 1363 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYS-- 1363 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCccc--
Confidence 999999999999987665321 0 01 3578889998877554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000971 730 WYWLGLGALFGFILLFNLGFTMAITFL 756 (1206)
Q Consensus 730 ~~w~~~g~l~g~~~~f~~~~~l~l~~~ 756 (1206)
..|++++++++|++++ ++.++++.|.
T Consensus 1364 ~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1364 GRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred ccccchhhhhHHHHHH-HHHHHhhheE
Confidence 4699999999999888 6666667665
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-67 Score=702.06 Aligned_cols=211 Identities=24% Similarity=0.311 Sum_probs=179.1
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+++|+. +...+|+|||++|+|||++||+|+||||||||+++|.|...+ .+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEe
Confidence 46999999999841 123599999999999999999999999999999999998764 47999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.+ ..+|+.++||||++.++.. |++|||.+.. .. .++.++++++..++.+.. |+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CC----CHHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 754 4567889999999999874 9999996531 11 234588999999887654 3445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+.+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1372 -G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 -GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 4899999999986 4566999999995
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++.+|+.
T Consensus 1448 -G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 -GRVVEFDTP 1456 (1622)
T ss_pred -CEEEEeCCH
Confidence 799999985
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=608.40 Aligned_cols=474 Identities=27% Similarity=0.354 Sum_probs=368.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCeeCCCCCcc-------ceEEEecCCC-
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS-LKVSGRVTYNGHDMGEFVPE-------RTAAYISQHD- 235 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~-~~~~G~I~~nG~~~~~~~~~-------~~~~yv~Q~d- 235 (1206)
..+++||||.+.|||+++|+|.|||||||+.++|.|.+++. ...+|+|.|+|.++.....+ +.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 57999999999999999999999999999999999999976 45689999999977554432 5799999995
Q ss_pred -CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 000971 236 -NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1206)
Q Consensus 236 -~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1206)
.+.|-+||.+-+.=..+.++... ..++...+.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 56787999998876655443211 12334567789999999987654
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
+.+.+.|||||||||.||+||+.+|++|++|||||+||..++.+|++.|+++.+ ..++.++.++|+..-+.+++|+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~-e~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR-ELGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHH-HcCcEEEEEcCCHHHHHHhcCe
Confidence 678899999999999999999999999999999999999999999999999876 4677788899999999999999
Q ss_pred EEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhh
Q 000971 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKI 474 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 474 (1206)
|+||++|++|+.|+.+++..- |. .||.. .+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p~-------------------------hpYT~-----------------~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------PQ-------------------------HPYTR-----------------GL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------cC-------------------------CcccH-----------------HH
Confidence 999999999999999988531 10 11100 00
Q ss_pred HHhhcCCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccc
Q 000971 475 SDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDG 554 (1206)
Q Consensus 475 ~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~ 554 (1206)
..
T Consensus 255 l~------------------------------------------------------------------------------ 256 (539)
T COG1123 255 LA------------------------------------------------------------------------------ 256 (539)
T ss_pred Hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHH
Q 000971 555 GIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAG 634 (1206)
Q Consensus 555 ~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~ 634 (1206)
..|.....
T Consensus 257 ---------------------------a~p~~~~~--------------------------------------------- 264 (539)
T COG1123 257 ---------------------------AVPRLGDE--------------------------------------------- 264 (539)
T ss_pred ---------------------------hCCCcccc---------------------------------------------
Confidence 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCccch
Q 000971 635 RFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESI 714 (1206)
Q Consensus 635 ~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~ 714 (1206)
...
T Consensus 265 ---------------------------------------------------------------------~~~-------- 267 (539)
T COG1123 265 ---------------------------------------------------------------------KII-------- 267 (539)
T ss_pred ---------------------------------------------------------------------ccc--------
Confidence 000
Q ss_pred hHHHhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCC
Q 000971 715 GVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGED 794 (1206)
Q Consensus 715 g~~~L~~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1206)
+
T Consensus 268 -----------------~-------------------------------------------------------------- 268 (539)
T COG1123 268 -----------------R-------------------------------------------------------------- 268 (539)
T ss_pred -----------------c--------------------------------------------------------------
Confidence 0
Q ss_pred ccCCCCCccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEc
Q 000971 795 ISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMG 874 (1206)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G 874 (1206)
. ... .. .+ ...-++.+||+..|..+..+. . ...+...+++||||.+++||++||+|
T Consensus 269 ~-~~~------------~~--------~~-~~~ll~V~~l~k~y~~~~~~~-~-~~~~~~~Av~~VSf~l~~GE~lglVG 324 (539)
T COG1123 269 L-PRR------------GP--------LR-AEPLLSVRNLSKRYGSRKGLF-V-RERGEVKAVDDVSFDLREGETLGLVG 324 (539)
T ss_pred c-ccc------------cc--------cc-cCceeEeeeeeeeeccccccc-c-ccccceeeeeeeeeEecCCCEEEEEC
Confidence 0 000 00 00 011355666665554432111 0 01234579999999999999999999
Q ss_pred cCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC--Cc---ccccceEEEeecCCC--CCCCCCHHHHHHHhhhhcCCCCC
Q 000971 875 VSGAGKTTLMDVLSGRKTGGYITGNITISGYPK--KQ---ETFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEV 947 (1206)
Q Consensus 875 ~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~--~~---~~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~a~lr~~~~~ 947 (1206)
+||||||||.++|+|...+ .+|.|.++|.+. .. ...++.+-+|+|++. +.|.+||++.+.-....... .
T Consensus 325 eSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~ 400 (539)
T COG1123 325 ESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--G 400 (539)
T ss_pred CCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--c
Confidence 9999999999999998875 479999999762 11 224556788888764 68999999999765443332 2
Q ss_pred CHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000971 948 DSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026 (1206)
Q Consensus 948 ~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~ 1026 (1206)
...+++++|.++++.++|.+ ..+++ +..||||||||++|||||+.+|++|++|||||.||+..+..|.++|+++
T Consensus 401 ~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~l 475 (539)
T COG1123 401 SGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL 475 (539)
T ss_pred chHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence 25667778999999999986 56666 4579999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1027 VDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1027 ~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
.++ |.|.|++|||.. -+...||||++|.+ |++|..|+.
T Consensus 476 q~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 476 QEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred HHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 866 999999999987 47789999999995 799999974
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-67 Score=704.89 Aligned_cols=211 Identities=22% Similarity=0.282 Sum_probs=178.8
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+++|+. +...+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.|||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEE
Confidence 46999999999841 123599999999999999999999999999999999998764 47999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.+ ..+++.++||||++.+++. |++|||.+.. .. .++.++++++..++.+.. |+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EH----NDADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CC----CHHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 654 4567889999999999874 9999996531 12 234588999999887654 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+.+||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1369 -G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1369 -GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS 1444 (1495)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 4899999999986 4566999999995
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++.+|+.
T Consensus 1445 -G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 -GQVLEYDSP 1453 (1495)
T ss_pred -CEEEEECCH
Confidence 799999985
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=673.25 Aligned_cols=217 Identities=18% Similarity=0.305 Sum_probs=180.9
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC------------
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG------------ 894 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~------------ 894 (1206)
..++|+||+|+|+.. +..++|+||||+|+||+++||+||||||||||+++|.|...+.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 369999999999632 1236999999999999999999999999999999999976641
Q ss_pred ----------------------------------------eeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCH
Q 000971 895 ----------------------------------------YITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTV 931 (1206)
Q Consensus 895 ----------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv 931 (1206)
+.+|+|.+||.++.. ..+++.+|||+|++.++. .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 147999999998654 457788999999999885 899
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000971 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1004 (1206)
Q Consensus 932 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~L 1004 (1206)
+|||.|+. + +.+ ++.++++++..++.+. .|+.+|.. ...||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~----~-~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK----E-DAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999862 1 222 2347888888887654 36667754 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHHhcCeEEEEecC---cE-EEEEcCC
Q 000971 1005 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRG---GQ-EIYVGPL 1066 (1206)
Q Consensus 1005 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g---g~-~~~~g~~ 1066 (1206)
|||||+||+.+++.|++.|+++. ..|+|+|+++|+++ ..+.+|+|++|++| |+ ++..|+.
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999986 35899999999985 46789999999973 66 4578874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-65 Score=682.69 Aligned_cols=211 Identities=18% Similarity=0.221 Sum_probs=178.9
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+++|+.. ...+|+|||++|+|||++||+|+||||||||+++|.|..++ .+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEE
Confidence 469999999998521 13599999999999999999999999999999999998764 47999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.+ ..+|+.++||||++.+++. |++|||.... .. .++.++++++.+++.+.. |+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QY----SDEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CC----CHHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 754 4567889999999999875 9999995211 12 234588999999987654 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+.+||||||||+||||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 46799999999999999999999999999999999999999999999875 4899999999986 4667899999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++.+|+.
T Consensus 1495 -G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 -GEVAEFGAP 1503 (1522)
T ss_pred -CEEEEECCH
Confidence 799999985
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-64 Score=622.97 Aligned_cols=487 Identities=22% Similarity=0.242 Sum_probs=353.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCC----------CCC------c-cce
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG----------EFV------P-ERT 227 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~----------~~~------~-~~~ 227 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|..+. ... . ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999987 899999997441 111 1 136
Q ss_pred EEEecCCC--CCCCCCCHHHHHHHHhhhc-CCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHH
Q 000971 228 AAYISQHD--NHIGEMTVRETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1206)
Q Consensus 228 ~~yv~Q~d--~~~~~lTV~Etl~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1206)
++||+|++ .+++.+||+||+.++.+.. +.. + .+....++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS-R---------------------------------EEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 99999987 6789999999999976432 110 0 011234667899
Q ss_pred HcCCcc---cccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 000971 305 VLGLEV---CADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381 (1206)
Q Consensus 305 ~lgL~~---~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i 381 (1206)
.+||.+ ..+. .+..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +++|+.+
T Consensus 152 ~~gL~~~~~~~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFI 225 (623)
T ss_pred HCCCCChhhHHhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 999963 2343 445799999999999999999999999999999999999999999999986533 4556778
Q ss_pred ecCchhHHhhcCeEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHH
Q 000971 382 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEF 461 (1206)
Q Consensus 382 ~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~ 461 (1206)
+|+..++.++||+|++|++|++++.|+++++.. -|.+....+ +
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~-----------------------------l 268 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRA-----------------------------L 268 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhh-----------------------------h
Confidence 999999999999999999999999998776521 000000000 0
Q ss_pred HHHHHhchhhhhhHHhhcCCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 000971 462 AEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLF 541 (1206)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f 541 (1206)
.... +
T Consensus 269 ~~~~---------------~------------------------------------------------------------ 273 (623)
T PRK10261 269 LAAV---------------P------------------------------------------------------------ 273 (623)
T ss_pred hhcc---------------C------------------------------------------------------------
Confidence 0000 0
Q ss_pred hccCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHh
Q 000971 542 LRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVF 621 (1206)
Q Consensus 542 ~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~ 621 (1206)
.. ..... +. .|
T Consensus 274 -~~----~~~~~------------------------------------~~-----------------~~----------- 284 (623)
T PRK10261 274 -QL----GAMKG------------------------------------LD-----------------YP----------- 284 (623)
T ss_pred -cc----ccccc------------------------------------cc-----------------CC-----------
Confidence 00 00000 00 00
Q ss_pred hhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 000971 622 LTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGY 701 (1206)
Q Consensus 622 i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~ 701 (1206)
.
T Consensus 285 -------------------------------------------------------------------------------~ 285 (623)
T PRK10261 285 -------------------------------------------------------------------------------R 285 (623)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred cccccCCCCccchhHHHhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeecccccccccccccc
Q 000971 702 SWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRG 781 (1206)
Q Consensus 702 ~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1206)
..... . ....
T Consensus 286 ~~~~~-------------~--------------------------------------~~~~------------------- 295 (623)
T PRK10261 286 RFPLI-------------S--------------------------------------LEHP------------------- 295 (623)
T ss_pred ccccc-------------c--------------------------------------cccc-------------------
Confidence 00000 0 0000
Q ss_pred ccccccCCCCCCCccCCCCCccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecce
Q 000971 782 TVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLS 861 (1206)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs 861 (1206)
. ...+. .... .. +.....+.++||++.++...... ........+|+|||
T Consensus 296 ~------------~~~~~---------~~~~--~~------~~~~~~L~~~~l~~~y~~~~~~~--~~~~~~~~~l~~vs 344 (623)
T PRK10261 296 A------------KQEPP---------IEQD--TV------VDGEPILQVRNLVTRFPLRSGLL--NRVTREVHAVEKVS 344 (623)
T ss_pred c------------ccCcc---------cccc--cc------cCCCceEEEeeeEEEEcCCCccc--cccCCceEEEeeeE
Confidence 0 00000 0000 00 00011378899988874210000 00001246999999
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc------cccceEEEeecCC--CCCCCCCHHH
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE------TFARISGYCEQND--IHSPFVTVYE 933 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~q~~--~~~~~~Tv~e 933 (1206)
|+|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++... .+++.++||+|++ .+++.+||.|
T Consensus 345 ~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~ 422 (623)
T PRK10261 345 FDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGD 422 (623)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHH
Confidence 99999999999999999999999999998763 479999999865321 2355799999997 4788999999
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD 1012 (1206)
++.+....+. ....++.++.+.++|+.+||. +..++.+ ..|||||||||+|||||+.+|+||||||||+|||
T Consensus 423 ~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 423 SIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP-----HEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9987643321 112344556789999999996 5666663 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1013 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1013 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
+.++..|++.|++++++ |.|||++||+++ .+...+|++++|.+ |++++.|+.
T Consensus 496 ~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~ 548 (623)
T PRK10261 496 VSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPR 548 (623)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999765 899999999987 57789999999985 799999975
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=616.17 Aligned_cols=460 Identities=21% Similarity=0.294 Sum_probs=349.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+.+|+|||+.|++|++++|+|||||||||||++|+|.+++. ..+|+|.++|.++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 46999999999999999999999999999999999999861 128999999998865432 2569999999989999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.|+........ .+ ..+....++.+++.+||++..+..++
T Consensus 97 ~tv~e~l~~~~~~~~~~~-~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (506)
T PRK13549 97 LSVLENIFLGNEITPGGI-MD------------------------------YDAMYLRAQKLLAQLKLDINPATPVG--- 142 (506)
T ss_pred CcHHHHhhhcccccccCC-cC------------------------------HHHHHHHHHHHHHHcCCCCCcccchh---
Confidence 999999998653211000 00 00112245678999999877776554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ . +++|+.++|+..++.++||+|++|++
T Consensus 143 --~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvi~~tH~~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 143 --NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-H-GIACIYISHKLNEVKAISDTICVIRD 218 (506)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHHhcCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999864 3 45566688888999999999999999
Q ss_pred CeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhcC
Q 000971 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1206)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~ 480 (1206)
|++++.|+.+++.. .+..+.
T Consensus 219 G~i~~~~~~~~~~~--------------------------------------------~~~~~~---------------- 238 (506)
T PRK13549 219 GRHIGTRPAAGMTE--------------------------------------------DDIITM---------------- 238 (506)
T ss_pred CEEeeecccccCCH--------------------------------------------HHHHHH----------------
Confidence 99998886432100 000000
Q ss_pred CccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhHHHH
Q 000971 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1206)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1206)
++... ..
T Consensus 239 ------------------------------------------------------------~~~~~-----~~-------- 245 (506)
T PRK13549 239 ------------------------------------------------------------MVGRE-----LT-------- 245 (506)
T ss_pred ------------------------------------------------------------hhCcC-----cc--------
Confidence 00000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHHHH
Q 000971 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1206)
Q Consensus 561 lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 640 (1206)
T Consensus 246 -------------------------------------------------------------------------------- 245 (506)
T PRK13549 246 -------------------------------------------------------------------------------- 245 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHhh
Q 000971 641 LLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLK 720 (1206)
Q Consensus 641 l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~ 720 (1206)
T Consensus 246 -------------------------------------------------------------------------------- 245 (506)
T PRK13549 246 -------------------------------------------------------------------------------- 245 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCCccCCCC
Q 000971 721 SRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNS 800 (1206)
Q Consensus 721 ~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1206)
. .. + . .
T Consensus 246 ------~---------------------------~~-~------------------------------------~--~-- 251 (506)
T PRK13549 246 ------A---------------------------LY-P------------------------------------R--E-- 251 (506)
T ss_pred ------c---------------------------cc-c------------------------------------c--c--
Confidence 0 00 0 0 0
Q ss_pred CccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcH
Q 000971 801 SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880 (1206)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGK 880 (1206)
.. .. + ...+.++|+++.++.. +++.+|+||||+|++|+++||+|||||||
T Consensus 252 ----------~~--~~--~------~~~l~~~~l~~~~~~~----------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGK 301 (506)
T PRK13549 252 ----------PH--TI--G------EVILEVRNLTAWDPVN----------PHIKRVDDVSFSLRRGEILGIAGLVGAGR 301 (506)
T ss_pred ----------cc--CC--C------CceEEEecCccccccc----------cccccccceeeEEcCCcEEEEeCCCCCCH
Confidence 00 00 0 0125667776654210 12359999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecCC---CCCCCCCHHHHHHHhhhhcCC--CCCCHHH
Q 000971 881 TTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESLLYSAWLRLP--PEVDSET 951 (1206)
Q Consensus 881 STLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~~Tv~e~l~~~a~lr~~--~~~~~~~ 951 (1206)
|||+++|+|...+ +.+|+|.++|.++... ..++.+||++|++ .+++.+||.||+.+....... ...+.+.
T Consensus 302 STLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 380 (506)
T PRK13549 302 TELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA 380 (506)
T ss_pred HHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH
Confidence 9999999997642 1379999999765321 1244689999985 467889999999875321111 0112333
Q ss_pred HHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 000971 952 RKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030 (1206)
Q Consensus 952 ~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g 1030 (1206)
..+.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.+...+++.|++++++|
T Consensus 381 ~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 455 (506)
T PRK13549 381 ELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQG 455 (506)
T ss_pred HHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCC
Confidence 446689999999996 5677764 4799999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCCc
Q 000971 1031 RTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGR 1068 (1206)
Q Consensus 1031 ~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~~ 1068 (1206)
+|||++||+++ ++.+.||++++|++ |+++..|+..+
T Consensus 456 ~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 456 VAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred CEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 99999999987 57889999999986 78888887653
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-64 Score=613.36 Aligned_cols=450 Identities=21% Similarity=0.325 Sum_probs=346.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+++|+|+|+.|.+|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999987 9999999998754322 2469999999989999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.|+..........+ ..+....++.+++.+||.+..+..++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 140 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRID------------------------------WKKMYAEADKLLARLNLRFSSDKLVG--- 140 (501)
T ss_pred CcHHHHhhhccccccccCccC------------------------------HHHHHHHHHHHHHHcCCCCCccCchh---
Confidence 999999998643211000000 00112235678999999887776655
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+.+++..+||+|++|++
T Consensus 141 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 141 --ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 6999999999999999999999999999999999999999999998854 3 45566688888999999999999999
Q ss_pred CeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhcC
Q 000971 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1206)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~ 480 (1206)
|+++..|+.+++.. ++..+.
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~---------------- 236 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEM---------------- 236 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHH----------------
Confidence 99998775432100 000000
Q ss_pred CccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhHHHH
Q 000971 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1206)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1206)
++...
T Consensus 237 ------------------------------------------------------------~~~~~--------------- 241 (501)
T PRK10762 237 ------------------------------------------------------------MVGRK--------------- 241 (501)
T ss_pred ------------------------------------------------------------hcCCC---------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHHHH
Q 000971 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1206)
Q Consensus 561 lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 640 (1206)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHhh
Q 000971 641 LLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLK 720 (1206)
Q Consensus 641 l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~ 720 (1206)
.....
T Consensus 242 --------------------------------------------------------------~~~~~------------- 246 (501)
T PRK10762 242 --------------------------------------------------------------LEDQY------------- 246 (501)
T ss_pred --------------------------------------------------------------ccccc-------------
Confidence 00000
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCCccCCCC
Q 000971 721 SRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNS 800 (1206)
Q Consensus 721 ~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1206)
+ . .
T Consensus 247 -------------------------------------~-----------------------~------------~----- 249 (501)
T PRK10762 247 -------------------------------------P-----------------------R------------L----- 249 (501)
T ss_pred -------------------------------------c-----------------------c------------c-----
Confidence 0 0 0
Q ss_pred CccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcH
Q 000971 801 SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880 (1206)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGK 880 (1206)
.. . + .+..+.++|++. .+|+|+||+|++||++||+|||||||
T Consensus 250 ----------~~--~-------~-~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~liG~NGsGK 291 (501)
T PRK10762 250 ----------DK--A-------P-GEVRLKVDNLSG------------------PGVNDVSFTLRKGEILGVSGLMGAGR 291 (501)
T ss_pred ----------cc--C-------C-CCcEEEEeCccc------------------CCcccceEEEcCCcEEEEecCCCCCH
Confidence 00 0 0 001355666541 26999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecCC---CCCCCCCHHHHHHHhhhhcCC---CCCCHH
Q 000971 881 TTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESLLYSAWLRLP---PEVDSE 950 (1206)
Q Consensus 881 STLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~~Tv~e~l~~~a~lr~~---~~~~~~ 950 (1206)
|||+++|+|...+ .+|+|.++|.++... ..++.+||++|++ .+++.+||.|++.+....... .....+
T Consensus 292 STLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 369 (501)
T PRK10762 292 TELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHA 369 (501)
T ss_pred HHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHH
Confidence 9999999998664 479999999765321 1345689999995 467889999999875321110 012223
Q ss_pred HHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 000971 951 TRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029 (1206)
Q Consensus 951 ~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~ 1029 (1206)
+.++.++++++.++|. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|++++++
T Consensus 370 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 444 (501)
T PRK10762 370 DEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444 (501)
T ss_pred HHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC
Confidence 3455689999999995 5677764 479999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCCc
Q 000971 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGR 1068 (1206)
Q Consensus 1030 g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~~ 1068 (1206)
|+|||++||++. .+...||++++|++ |++++.|+..+
T Consensus 445 g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 445 GLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred CCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 999999999987 57889999999985 78999888653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-64 Score=616.71 Aligned_cols=458 Identities=21% Similarity=0.292 Sum_probs=347.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 45999999999999999999999999999999999999887 9999999998865432 2469999999989999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.++..... ..+.. +..+ ..+....++.+++.+||.+..++.++
T Consensus 95 ~tv~e~l~~~~~~~~--~~~~~--------------~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~--- 144 (510)
T PRK09700 95 LTVLENLYIGRHLTK--KVCGV--------------NIID-----------WREMRVRAAMMLLRVGLKVDLDEKVA--- 144 (510)
T ss_pred CcHHHHhhhcccccc--ccccc--------------cccC-----------HHHHHHHHHHHHHHcCCCCCcccchh---
Confidence 999999987532100 00000 0000 00112346778999999887776654
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++. . +++|+.++|+..++.++||+|++|++
T Consensus 145 --~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 145 --NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-E-GTAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999865 3 45566688899999999999999999
Q ss_pred CeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhcC
Q 000971 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1206)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~ 480 (1206)
|++++.|+++++.. ++..+.
T Consensus 221 G~i~~~g~~~~~~~--------------------------------------------~~~~~~---------------- 240 (510)
T PRK09700 221 GSSVCSGMVSDVSN--------------------------------------------DDIVRL---------------- 240 (510)
T ss_pred CEEeeecchhhCCH--------------------------------------------HHHHHH----------------
Confidence 99999887653210 000000
Q ss_pred CccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhHHHH
Q 000971 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1206)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1206)
++.... . .
T Consensus 241 ------------------------------------------------------------~~~~~~--~---~------- 248 (510)
T PRK09700 241 ------------------------------------------------------------MVGREL--Q---N------- 248 (510)
T ss_pred ------------------------------------------------------------hcCCCc--c---c-------
Confidence 000000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHHHH
Q 000971 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1206)
Q Consensus 561 lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 640 (1206)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK09700 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHhh
Q 000971 641 LLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLK 720 (1206)
Q Consensus 641 l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~ 720 (1206)
.+
T Consensus 249 --------------------------------------------------------~~---------------------- 250 (510)
T PRK09700 249 --------------------------------------------------------RF---------------------- 250 (510)
T ss_pred --------------------------------------------------------cc----------------------
Confidence 00
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCCccCCCC
Q 000971 721 SRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNS 800 (1206)
Q Consensus 721 ~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1206)
.. . .+.
T Consensus 251 -----~~-------------------------------~-------------------------------------~~~- 256 (510)
T PRK09700 251 -----NA-------------------------------M-------------------------------------KEN- 256 (510)
T ss_pred -----cc-------------------------------c-------------------------------------ccc-
Confidence 00 0 000
Q ss_pred CccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcH
Q 000971 801 SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880 (1206)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGK 880 (1206)
... .. .+..+.++|+++.+ ..+|+||||+|++|+++||+|||||||
T Consensus 257 ---------~~~--~~--------~~~~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l~G~NGsGK 302 (510)
T PRK09700 257 ---------VSN--LA--------HETVFEVRNVTSRD---------------RKKVRDISFSVCRGEILGFAGLVGSGR 302 (510)
T ss_pred ---------ccc--CC--------CCcEEEEeCccccC---------------CCcccceeEEEcCCcEEEEECCCCCCH
Confidence 000 00 00136677776432 128999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecC---CCCCCCCCHHHHHHHhhhhc---CCC--C-C
Q 000971 881 TTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQN---DIHSPFVTVYESLLYSAWLR---LPP--E-V 947 (1206)
Q Consensus 881 STLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~---~~~~~~~Tv~e~l~~~a~lr---~~~--~-~ 947 (1206)
|||+++|+|...+ .+|+|.++|.++... ..++.+|||+|+ ..+++.+||+|++.+....+ ... . .
T Consensus 303 STLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 380 (510)
T PRK09700 303 TELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLF 380 (510)
T ss_pred HHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccccccccccccccc
Confidence 9999999998653 479999999765321 234568999998 45788899999998753211 000 0 1
Q ss_pred CHHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000971 948 DSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026 (1206)
Q Consensus 948 ~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~ 1026 (1206)
..+..++.++++++.++|. +..++.+ ..|||||||||.|||+|+.+|+||||||||+|||+.+...+++.|+++
T Consensus 381 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l 455 (510)
T PRK09700 381 HEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL 455 (510)
T ss_pred ChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHH
Confidence 1223335688999999996 6777764 479999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1027 VDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1027 ~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
+++|.|||+++|++. .+...||++++|++ |++++.++.
T Consensus 456 ~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 456 ADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 888999999999987 57889999999986 688888764
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=667.11 Aligned_cols=211 Identities=23% Similarity=0.263 Sum_probs=179.1
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..|.|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|...+ .+|+|.|||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 46999999999852 123599999999999999999999999999999999998764 47999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.. ..+++.+|||||++.++.. |++|||... ... .++.++++++.++|.+.. |+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~----sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEA----SSAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCC----CHHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 4567899999999999874 999999531 112 234589999999997654 4555553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 977 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~-P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
..+||||||||++|||||+++ |+||+||||||+||+.+.+.|++.|++.. .++|||+++|+++ ....||+|++|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 467999999999999999996 89999999999999999999999999864 4799999999975 567899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++.+|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 5 799999985
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-63 Score=662.31 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=178.4
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..+.|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 47999999999852 12469999999999999999999999999999999999864 37999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.. ..+++.++||||++.+++ -|+||||.... +..++.++++++.++|.+.. |+.+|.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~----------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYE----------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCc-cCHHHHhCccc----------CCCHHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 754 346788999999999987 49999994321 12245689999999997643 444554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+..+||||||||+||||||+++|+||+||||||+||..+...|++.|++.. .++|||+++|+++ ....||+|++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 345799999999999999999999999999999999999999999999875 4799999999975 4567999999986
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++.+|+.
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 799999985
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=611.61 Aligned_cols=464 Identities=22% Similarity=0.278 Sum_probs=346.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCeeCCCCCc-------cceEEEecCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFVP-------ERTAAYISQHD 235 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (1206)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999999862 1138999999998765421 24699999986
Q ss_pred C--CCCCCCHHHHHHHHhhhc-CCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc--
Q 000971 236 N--HIGEMTVRETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-- 310 (1206)
Q Consensus 236 ~--~~~~lTV~Etl~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-- 310 (1206)
. +++.+||.|++.+..... +.. . .+....++++++.+||.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------R------------------------EAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHCCCCChH
Confidence 4 567789999988653211 100 0 011234677899999975
Q ss_pred -cccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHH
Q 000971 311 -CADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389 (1206)
Q Consensus 311 -~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~ 389 (1206)
..+.. +..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +.+|+.++|+...+.
T Consensus 148 ~~~~~~-----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDY-----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhC-----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhc-CCeEEEEcCcHHHHH
Confidence 23544 44799999999999999999999999999999999999999999999986533 455666888888999
Q ss_pred hhcCeEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhch
Q 000971 390 DLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFH 469 (1206)
Q Consensus 390 ~~fD~vilL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 469 (1206)
.+||+|++|++|++++.|+++++... |. .+ ..
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~-------------------------~~--------~~------- 253 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PT-------------------------HP--------YT------- 253 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CC-------------------------CH--------HH-------
Confidence 99999999999999999987654210 00 00 00
Q ss_pred hhhhhHHhhcCCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 000971 470 VGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKH 549 (1206)
Q Consensus 470 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~ 549 (1206)
+. ++....
T Consensus 254 -----------------------------------------~~----------------------------~~~~~~--- 261 (529)
T PRK15134 254 -----------------------------------------QK----------------------------LLNSEP--- 261 (529)
T ss_pred -----------------------------------------HH----------------------------HHHhCc---
Confidence 00 000000
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccC
Q 000971 550 SLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGC 629 (1206)
Q Consensus 550 ~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl 629 (1206)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCC
Q 000971 630 DPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN 709 (1206)
Q Consensus 630 ~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~ 709 (1206)
. .
T Consensus 262 ------------------------------------------------------------------------~---~--- 263 (529)
T PRK15134 262 ------------------------------------------------------------------------S---G--- 263 (529)
T ss_pred ------------------------------------------------------------------------c---c---
Confidence 0 0
Q ss_pred CccchhHHHhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCC
Q 000971 710 SYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARG 789 (1206)
Q Consensus 710 ~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1206)
.+ .
T Consensus 264 -----------------------------------------------~~-----------------------~------- 266 (529)
T PRK15134 264 -----------------------------------------------DP-----------------------V------- 266 (529)
T ss_pred -----------------------------------------------cc-----------------------c-------
Confidence 00 0
Q ss_pred CCCCCccCCCCCccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeE
Q 000971 790 ESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVL 869 (1206)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~ 869 (1206)
. . . . .+ +..++++|+++.++.+.+. . +...+.+.+|+||||+|++|++
T Consensus 267 -----~--~------------~---~--~~------~~~l~~~~l~~~~~~~~~~-~-~~~~~~~~il~~isl~i~~Ge~ 314 (529)
T PRK15134 267 -----P--L------------P---E--PA------SPLLDVEQLQVAFPIRKGI-L-KRTVDHNVVVKNISFTLRPGET 314 (529)
T ss_pred -----c--c------------C---C--CC------CCcccccCcEEEeecCccc-c-ccccccceeeecceeEEcCCCE
Confidence 0 0 0 0 00 0024566676665311000 0 0000124699999999999999
Q ss_pred EEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc------cccceEEEeecCC--CCCCCCCHHHHHHHhhhh
Q 000971 870 TALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE------TFARISGYCEQND--IHSPFVTVYESLLYSAWL 941 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~l 941 (1206)
+||+||||||||||+++|+|... .+|+|.++|.++... .+++.+||++|++ .+++.+||.||+.+....
T Consensus 315 ~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~ 391 (529)
T PRK15134 315 LGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV 391 (529)
T ss_pred EEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence 99999999999999999999763 379999999765321 1245689999996 477889999999886433
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 000971 942 RLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020 (1206)
Q Consensus 942 r~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~ 1020 (1206)
+.. ..+..+.++.+.++++.++|. +..++. +..|||||||||+||++|+.+|+||||||||+|||+.++..++
T Consensus 392 ~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 465 (529)
T PRK15134 392 HQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465 (529)
T ss_pred ccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHH
Confidence 211 122334456789999999997 466665 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1021 RTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1021 ~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
+.|++++++ |+|||++||++. .+.+.+|++++|++ |+++..|+.
T Consensus 466 ~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 466 ALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 999999865 899999999987 57788999999986 688888874
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-63 Score=608.95 Aligned_cols=445 Identities=23% Similarity=0.316 Sum_probs=342.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECC-----------------------eeC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNG-----------------------HDM 219 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l--~~~~~~~G~I~~nG-----------------------~~~ 219 (1206)
+.+|+|+|+.+.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999996 566 89999972 221
Q ss_pred C-------CC------CccceEEEecCC-CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHH
Q 000971 220 G-------EF------VPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285 (1206)
Q Consensus 220 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~ 285 (1206)
. .. ..++.++|++|+ +.+++.+||+||+.|+....+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~--------------------------- 142 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEG--------------------------- 142 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCH---------------------------
Confidence 0 00 013468999997 678899999999998654322100
Q ss_pred HHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHH
Q 000971 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365 (1206)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~ 365 (1206)
.+....++.+++.+||++..+..+ ..|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.
T Consensus 143 -------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 143 -------KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred -------HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 011234677899999987766554 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhh
Q 000971 366 LKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQY 445 (1206)
Q Consensus 366 L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~ 445 (1206)
|+++++.. +.+|+.++|+...+.++||+|++|++|++++.|+++++.+.+.
T Consensus 211 l~~l~~~~-g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~---------------------------- 261 (520)
T TIGR03269 211 LEEAVKAS-GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFM---------------------------- 261 (520)
T ss_pred HHHHHHhc-CcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHH----------------------------
Confidence 99986533 4556668888889999999999999999998876543210000
Q ss_pred hcccCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHH
Q 000971 446 WTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIF 525 (1206)
Q Consensus 446 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~ 525 (1206)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHH
Q 000971 526 KLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSW 605 (1206)
Q Consensus 526 ~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~ 605 (1206)
. .. .
T Consensus 262 -----------------------~---~~------------------------------------------------~-- 265 (520)
T TIGR03269 262 -----------------------E---GV------------------------------------------------S-- 265 (520)
T ss_pred -----------------------h---hc------------------------------------------------h--
Confidence 0 00 0
Q ss_pred HHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCH
Q 000971 606 ILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSP 685 (1206)
Q Consensus 606 i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp 685 (1206)
+ +
T Consensus 266 ----~--------------------------------------------------------------~------------ 267 (520)
T TIGR03269 266 ----E--------------------------------------------------------------V------------ 267 (520)
T ss_pred ----h--------------------------------------------------------------h------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCccchhHHHhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcce
Q 000971 686 MSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAV 765 (1206)
Q Consensus 686 ~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~ 765 (1206)
...
T Consensus 268 --------------------------------------------------------------------------~~~--- 270 (520)
T TIGR03269 268 --------------------------------------------------------------------------EKE--- 270 (520)
T ss_pred --------------------------------------------------------------------------ccc---
Confidence 000
Q ss_pred eeccccccccccccccccccccCCCCCCCccCCCCCccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhh
Q 000971 766 ITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMK 845 (1206)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~ 845 (1206)
. .. +. ....++++|+++.++..
T Consensus 271 ----------------~-----------~~-------------------~~--------~~~~l~~~~l~~~~~~~---- 292 (520)
T TIGR03269 271 ----------------C-----------EV-------------------EV--------GEPIIKVRNVSKRYISV---- 292 (520)
T ss_pred ----------------c-----------cc-------------------CC--------CCceEEEeccEEEeccC----
Confidence 0 00 00 00126778888776310
Q ss_pred hcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEc-Ccc---CCc------ccccce
Q 000971 846 LQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS-GYP---KKQ------ETFARI 915 (1206)
Q Consensus 846 ~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~---~~~------~~~~~~ 915 (1206)
..+.+.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++ |.+ ... ...++.
T Consensus 293 ----~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 366 (520)
T TIGR03269 293 ----DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEWVDMTKPGPDGRGRAKRY 366 (520)
T ss_pred ----CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCccccccccchhhHHHHhhh
Confidence 00124699999999999999999999999999999999998653 47999996 532 111 112456
Q ss_pred EEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-----ccccccCCCCCCCCCHHHHHHHH
Q 000971 916 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-----LIQSLVGLPGVSGLSTEQRKRLT 990 (1206)
Q Consensus 916 ~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~~g~~~~~~LSgGqrqrl~ 990 (1206)
+||++|++.+++.+||.|++.+...+. ...+..++.+.++++.++|.+ ..++. +..|||||||||+
T Consensus 367 i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~qrv~ 437 (520)
T TIGR03269 367 IGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGERHRVA 437 (520)
T ss_pred EEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHHHHHH
Confidence 899999988889999999998753221 123334456889999999975 34555 3579999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 991 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 991 ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+||+.+|+||||||||+|||+.+...+++.|++++++ |.|||+++|++. .+.+.+|++++|++ |+++..|+.
T Consensus 438 laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 438 LAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDP 512 (520)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999765 899999999987 57788999999985 788888874
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=607.83 Aligned_cols=453 Identities=20% Similarity=0.263 Sum_probs=344.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 35999999999999999999999999999999999999987 9999999998765432 2359999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.|..... + +....++.+++.+||++..+..++
T Consensus 101 ~tv~e~l~~~~~~~------~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (510)
T PRK15439 101 LSVKENILFGLPKR------Q--------------------------------ASMQKMKQLLAALGCQLDLDSSAG--- 139 (510)
T ss_pred CcHHHHhhcccccc------h--------------------------------HHHHHHHHHHHHcCCCccccCChh---
Confidence 99999998853100 0 011235678899999877776654
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ . +.+|+.++|+..++.++||+|++|++
T Consensus 140 --~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 140 --SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999864 3 45666688998999999999999999
Q ss_pred CeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhcC
Q 000971 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1206)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~ 480 (1206)
|++++.|+++++... + ..+.+.
T Consensus 216 G~i~~~g~~~~~~~~---------------~-----------------------------~~~~~~-------------- 237 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------D-----------------------------IIQAIT-------------- 237 (510)
T ss_pred CEEEEecChHHcCHH---------------H-----------------------------HHHHHh--------------
Confidence 999999987643110 0 000000
Q ss_pred CccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhHHHH
Q 000971 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1206)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1206)
..... .....
T Consensus 238 --------------------------------------------------------------~~~~~-~~~~~------- 247 (510)
T PRK15439 238 --------------------------------------------------------------PAARE-KSLSA------- 247 (510)
T ss_pred --------------------------------------------------------------Ccccc-ccccc-------
Confidence 00000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHHHH
Q 000971 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1206)
Q Consensus 561 lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 640 (1206)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHhh
Q 000971 641 LLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLK 720 (1206)
Q Consensus 641 l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~ 720 (1206)
.. ..
T Consensus 248 --------------------------------~~---------------------------~~----------------- 251 (510)
T PRK15439 248 --------------------------------SQ---------------------------KL----------------- 251 (510)
T ss_pred --------------------------------cc---------------------------cc-----------------
Confidence 00 00
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCCccCCCC
Q 000971 721 SRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNS 800 (1206)
Q Consensus 721 ~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1206)
...+ +. . .
T Consensus 252 ~~~~---------------------------------~~-----------------------------------~--~-- 259 (510)
T PRK15439 252 WLEL---------------------------------PG-----------------------------------N--R-- 259 (510)
T ss_pred cccc---------------------------------cc-----------------------------------c--c--
Confidence 0000 00 0 0
Q ss_pred CccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcH
Q 000971 801 SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880 (1206)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGK 880 (1206)
. .. . . .+.-+..+|++. .+|+||||+|++|+++||+|||||||
T Consensus 260 ---------~-~~-~--~------~~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l~G~NGsGK 302 (510)
T PRK15439 260 ---------R-QQ-A--A------GAPVLTVEDLTG------------------EGFRNISLEVRAGEILGLAGVVGAGR 302 (510)
T ss_pred ---------c-cc-C--C------CCceEEEeCCCC------------------CCccceeEEEcCCcEEEEECCCCCCH
Confidence 0 00 0 0 011256666651 15899999999999999999999999
Q ss_pred HHHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecCC---CCCCCCCHHHHHHHhhhhcCCCCCCHHHHH
Q 000971 881 TTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESLLYSAWLRLPPEVDSETRK 953 (1206)
Q Consensus 881 STLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~ 953 (1206)
|||+++|+|...+ .+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++......+..........+
T Consensus 303 STLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~ 380 (510)
T PRK15439 303 TELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN 380 (510)
T ss_pred HHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH
Confidence 9999999997653 379999999865321 1234689999984 477889999998642111111001122234
Q ss_pred HHHHHHHHHcCCc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 000971 954 MFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032 (1206)
Q Consensus 954 ~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1032 (1206)
+.++++++.++|. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.+...+++.|++++++|.|
T Consensus 381 ~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~t 455 (510)
T PRK15439 381 AVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVA 455 (510)
T ss_pred HHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCE
Confidence 5688999999997 6777764 579999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 1033 VVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1033 vi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
||+++|++. ++.+.||++++|++ |++++.|..+
T Consensus 456 iIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 456 VLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred EEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 999999997 58889999999985 7999888764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-63 Score=602.61 Aligned_cols=459 Identities=18% Similarity=0.262 Sum_probs=344.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+++|+|||+.+++|++++|+|||||||||||++|+|.++|. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 46999999999999999999999999999999999998761 128999999998865432 2469999999989999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc-cccccCc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA-DTMVGDE 319 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vg~~ 319 (1206)
+||+||+.|+........... ..+....++.+++.+||.+.. +..+
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMA------------------------------YNAMYLRAKNLLRELQLDADNVTRPV--- 139 (500)
T ss_pred CcHHHHHHhhccccccccccC------------------------------HHHHHHHHHHHHHHcCCCCCcccCch---
Confidence 999999988643210000000 001122456789999998654 3334
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++. . +++|+.++|+..++.++||+|++|+
T Consensus 140 --~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tviiitHd~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 140 --GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-H-GVACVYISHKLNEVKAVCDTICVIR 215 (500)
T ss_pred --hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999999864 3 4556668899999999999999999
Q ss_pred CCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 000971 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELR 479 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~ 479 (1206)
+|++++.|+.+++.. ++..
T Consensus 216 ~G~i~~~~~~~~~~~--------------------------------------------~~~~----------------- 234 (500)
T TIGR02633 216 DGQHVATKDMSTMSE--------------------------------------------DDII----------------- 234 (500)
T ss_pred CCeEeeecCcccCCH--------------------------------------------HHHH-----------------
Confidence 999987664321000 0000
Q ss_pred CCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhHHH
Q 000971 480 TPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAG 559 (1206)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g 559 (1206)
. .+.... .
T Consensus 235 ------------------------------------------------------~-----~~~~~~-----~-------- 242 (500)
T TIGR02633 235 ------------------------------------------------------T-----MMVGRE-----I-------- 242 (500)
T ss_pred ------------------------------------------------------H-----HHhCcc-----c--------
Confidence 0 000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHHH
Q 000971 560 ALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQ 639 (1206)
Q Consensus 560 ~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~ 639 (1206)
+
T Consensus 243 --------------------------------------------------~----------------------------- 243 (500)
T TIGR02633 243 --------------------------------------------------T----------------------------- 243 (500)
T ss_pred --------------------------------------------------c-----------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHh
Q 000971 640 YLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVL 719 (1206)
Q Consensus 640 ~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L 719 (1206)
.
T Consensus 244 --------------------------------------------------------------------~----------- 244 (500)
T TIGR02633 244 --------------------------------------------------------------------S----------- 244 (500)
T ss_pred --------------------------------------------------------------------c-----------
Confidence 0
Q ss_pred hccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCCccCCC
Q 000971 720 KSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRN 799 (1206)
Q Consensus 720 ~~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1206)
. . +. .
T Consensus 245 ----~-------------------------------~-~~-----------------------------------~---- 249 (500)
T TIGR02633 245 ----L-------------------------------Y-PH-----------------------------------E---- 249 (500)
T ss_pred ----c-------------------------------c-cc-----------------------------------c----
Confidence 0 0 00 0
Q ss_pred CCccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCc
Q 000971 800 SSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 879 (1206)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaG 879 (1206)
. . .. ....+.++|+++.+.. .+++.+|+||||+|++||++||+||||||
T Consensus 250 ----------~-~--~~--------~~~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsG 298 (500)
T TIGR02633 250 ----------P-H--EI--------GDVILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGAG 298 (500)
T ss_pred ----------c-c--CC--------CCceEEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCCC
Confidence 0 0 00 0012566777654410 01235899999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCeeEEEEEEcCccCCc----ccccceEEEeecCC---CCCCCCCHHHHHHHhhh--hcCCCCCCHH
Q 000971 880 KTTLMDVLSGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSPFVTVYESLLYSAW--LRLPPEVDSE 950 (1206)
Q Consensus 880 KSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~~~~~~Tv~e~l~~~a~--lr~~~~~~~~ 950 (1206)
|||||++|+|...+ +.+|+|.++|.++.. ...++.+||++|+. .+++.+||+|++.++.. ..........
T Consensus 299 KSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~ 377 (500)
T TIGR02633 299 RTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAA 377 (500)
T ss_pred HHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHH
Confidence 99999999998652 137999999976532 12345689999995 47888999999987532 1110112223
Q ss_pred HHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 000971 951 TRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029 (1206)
Q Consensus 951 ~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~ 1029 (1206)
..++.++++++.+++.+ ..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++
T Consensus 378 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 452 (500)
T TIGR02633 378 AELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452 (500)
T ss_pred HHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC
Confidence 34566899999999964 566664 479999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1030 g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|.|||++||+++ ++.+.||++++|.+ |+++..++.
T Consensus 453 g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 487 (500)
T TIGR02633 453 GVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVN 487 (500)
T ss_pred CCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 999999999987 57889999999985 688877754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-63 Score=602.24 Aligned_cols=453 Identities=21% Similarity=0.299 Sum_probs=344.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999999887 9999999998754322 3579999999989999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.++......+. . + ..+....++.+++.+||++..+..+
T Consensus 94 ~tv~~~l~~~~~~~~~~~----~----------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~---- 138 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI----V----------------N-----------RRLLNYEAREQLEHLGVDIDPDTPL---- 138 (501)
T ss_pred CCHHHHHHhcccccccCC----C----------------C-----------HHHHHHHHHHHHHHcCCCCCcCCch----
Confidence 999999998532100000 0 0 0011224567899999987666554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++. . +++|+.++|+..++..+||+|++|++
T Consensus 139 -~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 139 -KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-E-GRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998854 3 45566688888899999999999999
Q ss_pred CeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhcC
Q 000971 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1206)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~ 480 (1206)
|+++..++.... .+.++..+
T Consensus 216 G~i~~~~~~~~~-------------------------------------------~~~~~~~~----------------- 235 (501)
T PRK11288 216 GRYVATFDDMAQ-------------------------------------------VDRDQLVQ----------------- 235 (501)
T ss_pred CEEEeecCcccc-------------------------------------------CCHHHHHH-----------------
Confidence 999865421000 00000000
Q ss_pred CccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhHHHH
Q 000971 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1206)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1206)
.+... . .
T Consensus 236 -----------------------------------------------------------~~~~~----~-~--------- 242 (501)
T PRK11288 236 -----------------------------------------------------------AMVGR----E-I--------- 242 (501)
T ss_pred -----------------------------------------------------------HhcCC----C-c---------
Confidence 00000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHHHH
Q 000971 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1206)
Q Consensus 561 lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 640 (1206)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHhh
Q 000971 641 LLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLK 720 (1206)
Q Consensus 641 l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~ 720 (1206)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCCccCCCC
Q 000971 721 SRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNS 800 (1206)
Q Consensus 721 ~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1206)
... . . . .+
T Consensus 243 -----~~~---------------------------~-~------------------------------------~-~~-- 250 (501)
T PRK11288 243 -----GDI---------------------------Y-G------------------------------------Y-RP-- 250 (501)
T ss_pred -----ccc---------------------------c-c------------------------------------c-cc--
Confidence 000 0 0 0 00
Q ss_pred CccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcH
Q 000971 801 SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880 (1206)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGK 880 (1206)
. . ..+..++++|+++. .+++|+|++|++||++||+|||||||
T Consensus 251 -----------~--~--------~~~~~l~~~~~~~~-----------------~~l~~isl~i~~Ge~~~iiG~NGsGK 292 (501)
T PRK11288 251 -----------R--P--------LGEVRLRLDGLKGP-----------------GLREPISFSVRAGEIVGLFGLVGAGR 292 (501)
T ss_pred -----------c--C--------CCCcEEEEeccccC-----------------CcccceeEEEeCCcEEEEEcCCCCCH
Confidence 0 0 00113566666521 38999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCeeEEEEEEcCccCCc----ccccceEEEeecCC---CCCCCCCHHHHHHHhhhhcC-CCC--CCHH
Q 000971 881 TTLMDVLSGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSPFVTVYESLLYSAWLRL-PPE--VDSE 950 (1206)
Q Consensus 881 STLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~~~~~~Tv~e~l~~~a~lr~-~~~--~~~~ 950 (1206)
|||+++|+|...+ .+|+|.++|.++.. ...++.++|++|++ .+++.+|+.|++.+...... +.. ....
T Consensus 293 STLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 370 (501)
T PRK11288 293 SELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNR 370 (501)
T ss_pred HHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChH
Confidence 9999999998653 47999999976532 12245689999986 47888999999987532111 000 1122
Q ss_pred HHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 000971 951 TRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029 (1206)
Q Consensus 951 ~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~ 1029 (1206)
..++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.+...+++.|++++++
T Consensus 371 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 445 (501)
T PRK11288 371 WEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445 (501)
T ss_pred HHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC
Confidence 3345688999999994 6677764 479999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCCcch
Q 000971 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHS 1070 (1206)
Q Consensus 1030 g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~~~~ 1070 (1206)
|.|||++||++. ++.+.+|++++|++ |++++.|..++.+
T Consensus 446 g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~ 484 (501)
T PRK11288 446 GVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQAT 484 (501)
T ss_pred CCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccCC
Confidence 999999999987 58889999999985 7899999876543
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=613.97 Aligned_cols=359 Identities=35% Similarity=0.620 Sum_probs=304.3
Q ss_pred CCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC-eeEEEEEEc
Q 000971 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITIS 903 (1206)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~ 903 (1206)
.+..+.|+|+++..+.+.. ..+++|+||||.++|||++|||||||||||||||+|+|+..++ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3457899999998865421 3478999999999999999999999999999999999998764 689999999
Q ss_pred CccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 904 GYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 904 g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
|++.....+++.+|||+|+|.++|++||+|+|.|+|.+|+|...+.++++++|+++++.+||.+++|+++|.++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999988999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
||||||+||.+|++||+||||||||||||+.++..++++|+++|++|+|||||+|||+.+++++||++++|.+ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 699999
Q ss_pred cCCCcchhHHHHHHHhCCCcccCCCCCCccceeeeeeccc--hhhhc----CCCHHHHHhhcHHHHHHHH-HHHHhcCCC
Q 000971 1064 GPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASS--QEVAL----GVDFNDIFRCSELYRRNKA-LIEELSKPT 1136 (1206)
Q Consensus 1064 g~~~~~~~~~~~yf~~~~g~~~~~~~~npa~~~l~~~~~~--~~~~~----~~~~~~~~~~s~~~~~~~~-~~~~~~~~~ 1136 (1206)
|+. +++++||+++ |.| ||+++|||||++|+++.. .+... .......++......+... ....+...
T Consensus 253 G~~----~~~~~ff~~~-G~~-~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 325 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GFP-CPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS- 325 (613)
T ss_pred cCH----HHHHHHHHhC-CCC-CCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccc-
Confidence 996 6899999998 664 999999999999998853 11000 0001111110111111100 00011111
Q ss_pred CCCCCCCCCCccCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc
Q 000971 1137 PGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTLKEPR 1204 (1206)
Q Consensus 1137 ~~~~~~~~~~~~~~~~~~q~~~l~~r~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~ 1204 (1206)
.+ .+....++||.||+.|++|.+++.+|+|.+...|+++.+++|+++|++||+++++..++++
T Consensus 326 ---~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~ 388 (613)
T KOG0061|consen 326 ---KK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQN 388 (613)
T ss_pred ---cc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHH
Confidence 11 1111278999999999999999999999999999999999999999999999988877654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=591.21 Aligned_cols=450 Identities=17% Similarity=0.264 Sum_probs=341.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999999887 9999999998764322 3569999999888999
Q ss_pred CCHHHHHHHHhh-hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 241 MTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 241 lTV~Etl~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
+||+||+.++.. ..+.. . + ..+....++.+++.+||.+..+..++
T Consensus 88 ~tv~~~l~~~~~~~~~~~--~-------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~-- 133 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMF--V-------------------D-----------QDKMYRDTKAIFDELDIDIDPRAKVA-- 133 (491)
T ss_pred CCHHHHhhcccccccccc--c-------------------C-----------HHHHHHHHHHHHHHcCCCCCccCchh--
Confidence 999999987532 11100 0 0 00011235678899999877766554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++. . +.+|+.++|+.+++..+||+|++|+
T Consensus 134 ---~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 134 ---TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-R-GCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999999864 3 4456668888899999999999999
Q ss_pred CCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 000971 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELR 479 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~ 479 (1206)
+|++++.|+++++.. ++..+.
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 229 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIAM--------------- 229 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHHH---------------
Confidence 999998876432100 000000
Q ss_pred CCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhHHH
Q 000971 480 TPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAG 559 (1206)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g 559 (1206)
++.... .
T Consensus 230 -------------------------------------------------------------~~~~~~--~---------- 236 (491)
T PRK10982 230 -------------------------------------------------------------MVGRSL--T---------- 236 (491)
T ss_pred -------------------------------------------------------------HhCCCc--c----------
Confidence 000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHHH
Q 000971 560 ALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQ 639 (1206)
Q Consensus 560 ~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~ 639 (1206)
T Consensus 237 -------------------------------------------------------------------------------- 236 (491)
T PRK10982 237 -------------------------------------------------------------------------------- 236 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHh
Q 000971 640 YLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVL 719 (1206)
Q Consensus 640 ~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L 719 (1206)
..
T Consensus 237 -------------------------------------------------------------~~----------------- 238 (491)
T PRK10982 237 -------------------------------------------------------------QR----------------- 238 (491)
T ss_pred -------------------------------------------------------------cc-----------------
Confidence 00
Q ss_pred hccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCCccCCC
Q 000971 720 KSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRN 799 (1206)
Q Consensus 720 ~~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1206)
. + . .
T Consensus 239 ------------------------------------~-~------------------------------------~--~- 242 (491)
T PRK10982 239 ------------------------------------F-P------------------------------------D--K- 242 (491)
T ss_pred ------------------------------------c-c------------------------------------c--c-
Confidence 0 0 0 0
Q ss_pred CCccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCc
Q 000971 800 SSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 879 (1206)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaG 879 (1206)
.. . + .+..+.++|+++.. +.+|+|||+.+++||++||+||||||
T Consensus 243 -----------~~--~-------~-~~~~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsG 286 (491)
T PRK10982 243 -----------EN--K-------P-GEVILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAK 286 (491)
T ss_pred -----------cC--C-------C-CCcEEEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCC
Confidence 00 0 0 01136777777641 14899999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecCCC---CCCCCCHHHHHHHhhh--hcCCCC-CCH
Q 000971 880 KTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDI---HSPFVTVYESLLYSAW--LRLPPE-VDS 949 (1206)
Q Consensus 880 KSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~---~~~~~Tv~e~l~~~a~--lr~~~~-~~~ 949 (1206)
||||+++|+|...+ .+|+|.++|.++... ..++.+||++|+.. +++.+|+.++..+... ...... ...
T Consensus 287 KSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (491)
T PRK10982 287 RTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDN 364 (491)
T ss_pred HHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCc
Confidence 99999999998763 479999999765421 12445899999853 5778888777433210 000001 122
Q ss_pred HHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000971 950 ETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028 (1206)
Q Consensus 950 ~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~ 1028 (1206)
...++.+.++++.+++. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.++..+++.|+++.+
T Consensus 365 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~ 439 (491)
T PRK10982 365 SRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK 439 (491)
T ss_pred HHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH
Confidence 33345688899999995 4556653 57999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 1029 TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1029 ~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
+|.|||++||+++ ++.+.+|++++|++ |+++..++..
T Consensus 440 ~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 440 KDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred CCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 8999999999987 57889999999986 7888777654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=581.00 Aligned_cols=447 Identities=20% Similarity=0.260 Sum_probs=329.5
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCC--C--
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNH--I-- 238 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~--~-- 238 (1206)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.. +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 4999999999999999999999999999999999999987 9999999977643321 2458999997532 1
Q ss_pred ----CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 000971 239 ----GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1206)
Q Consensus 239 ----~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1206)
..+||+|++.+.. +....++.+++.+||++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLDR 131 (490)
T ss_pred chhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhhC
Confidence 1467777764310 001235667899999887776
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ . +.+|+.++|+..++.++||+
T Consensus 132 ~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 RFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-S-GITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCE
Confidence 655 6999999999999999999999999999999999999999999999865 3 44556678888899999999
Q ss_pred EEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhh
Q 000971 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKI 474 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 474 (1206)
|++|++|++++.|+++++.+- +.+ ..+ .
T Consensus 205 v~~l~~G~i~~~~~~~~~~~~---------------~~~-------------------------~~~----~-------- 232 (490)
T PRK10938 205 AGVLADCTLAETGEREEILQQ---------------ALV-------------------------AQL----A-------- 232 (490)
T ss_pred EEEEECCEEEEeCCHHHHhcc---------------hhh-------------------------hhh----h--------
Confidence 999999999999876643100 000 000 0
Q ss_pred HHhhcCCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccc
Q 000971 475 SDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDG 554 (1206)
Q Consensus 475 ~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~ 554 (1206)
. . .....
T Consensus 233 -----------------------------------~---------------------------------~----~~~~~- 239 (490)
T PRK10938 233 -----------------------------------H---------------------------------S----EQLEG- 239 (490)
T ss_pred -----------------------------------h---------------------------------h----hccCc-
Confidence 0 0 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHH
Q 000971 555 GIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAG 634 (1206)
Q Consensus 555 ~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~ 634 (1206)
T Consensus 240 -------------------------------------------------------------------------------- 239 (490)
T PRK10938 240 -------------------------------------------------------------------------------- 239 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCccch
Q 000971 635 RFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESI 714 (1206)
Q Consensus 635 ~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~ 714 (1206)
. . .+.
T Consensus 240 ------------------------------------------------------------------~--~-~~~------ 244 (490)
T PRK10938 240 ------------------------------------------------------------------V--Q-LPE------ 244 (490)
T ss_pred ------------------------------------------------------------------c--c-cCc------
Confidence 0 0 000
Q ss_pred hHHHhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCC
Q 000971 715 GVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGED 794 (1206)
Q Consensus 715 g~~~L~~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1206)
. . . .
T Consensus 245 -------------------------------------------~---~-------------------~-----------~ 248 (490)
T PRK10938 245 -------------------------------------------P---D-------------------E-----------P 248 (490)
T ss_pred -------------------------------------------c---c-------------------c-----------c
Confidence 0 0 0 0
Q ss_pred ccCCCCCccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEc
Q 000971 795 ISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMG 874 (1206)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G 874 (1206)
. ... . . . .....++++|+++.++ ++.+|+||||.|++||++||+|
T Consensus 249 ~-~~~----------~-~--~--------~~~~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G 293 (490)
T PRK10938 249 S-ARH----------A-L--P--------ANEPRIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVG 293 (490)
T ss_pred c-ccc----------c-c--C--------CCCceEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEEC
Confidence 0 000 0 0 0 0011378899988773 2459999999999999999999
Q ss_pred cCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc----ccccceEEEeecCCCCCC--CCCHHHHHHHhhhh--cCCCC
Q 000971 875 VSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSP--FVTVYESLLYSAWL--RLPPE 946 (1206)
Q Consensus 875 ~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~~~~~--~~Tv~e~l~~~a~l--r~~~~ 946 (1206)
|||||||||+++|+|.... ..+|+|.++|.+... ...++.+||++|++.++. ..|+++++.+...- .....
T Consensus 294 ~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (490)
T PRK10938 294 PNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQA 372 (490)
T ss_pred CCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccC
Confidence 9999999999999996431 137999999976421 123456899999875543 35677766543210 11111
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000971 947 VDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025 (1206)
Q Consensus 947 ~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~ 1025 (1206)
.. ...++.++++++.++|.+ ..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++
T Consensus 373 ~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 446 (490)
T PRK10938 373 VS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDV 446 (490)
T ss_pred CC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 11 223456899999999987 777764 57999999999999999999999999999999999999999999999
Q ss_pred HHhCC-CEEEEEecCCchHHHH-hcCeEEEEecCcEEEEEc
Q 000971 1026 TVDTG-RTVVCTIHQPGIDIFD-AFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 1026 ~~~~g-~tvi~~~H~p~~~i~~-~~d~v~ll~~gg~~~~~g 1064 (1206)
++++| .|||+++|+++ ++.+ .+|++++|++ |++++.-
T Consensus 447 l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~~ 485 (490)
T PRK10938 447 LISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRYV 485 (490)
T ss_pred HHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEee
Confidence 98776 47999999986 4655 5899999986 5665543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-59 Score=507.87 Aligned_cols=470 Identities=25% Similarity=0.319 Sum_probs=368.9
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCeeCCCCCcc-------ceEEEecC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS--SLKVSGRVTYNGHDMGEFVPE-------RTAAYISQ 233 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~--~~~~~G~I~~nG~~~~~~~~~-------~~~~yv~Q 233 (1206)
....++++|||.|++||.++|+|.||||||-..+++.|+++. ....+|+|.|+|.++-.+..+ ..|++++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 456799999999999999999999999999999999999985 345689999999998655432 36999999
Q ss_pred CC--CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc
Q 000971 234 HD--NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVC 311 (1206)
Q Consensus 234 ~d--~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1206)
++ .+.|-.|+...|.-..+++...+ ..+++..+-++|+..|+.+-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~~---------------------------------~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGLS---------------------------------RAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhccc---------------------------------HHHHHHHHHHHHHHcCCCch
Confidence 96 56777788877776665542111 11234456778999999876
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh
Q 000971 312 ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391 (1206)
Q Consensus 312 ~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1206)
...+ +.++..|||||||||.||.||+.+|++|+-||||++||.....+|.+.|+++-.. -+-.++.|+|+..-+-.+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~-~gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE-LGMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH-hCcEEEEEeccHHHHHHh
Confidence 5543 5678899999999999999999999999999999999999999999999998764 456677799999999999
Q ss_pred cCeEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhh
Q 000971 392 FDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVG 471 (1206)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 471 (1206)
+|+|+||.+|+++++|+.+.+.. .|.+ ||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHH-----------------
Confidence 99999999999999998776521 1110 000
Q ss_pred hhhHHhhcCCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 000971 472 QKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSL 551 (1206)
Q Consensus 472 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~ 551 (1206)
|.++ ..
T Consensus 255 ---------------------------------------r~Ll----------------------------~a------- 260 (534)
T COG4172 255 ---------------------------------------RKLL----------------------------AA------- 260 (534)
T ss_pred ---------------------------------------HHHH----------------------------hc-------
Confidence 0000 00
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCC
Q 000971 552 TDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDP 631 (1206)
Q Consensus 552 ~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~ 631 (1206)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCc
Q 000971 632 NAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSY 711 (1206)
Q Consensus 632 ~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~ 711 (1206)
| +.
T Consensus 261 -----------------------------------------------------------------e---------P~--- 263 (534)
T COG4172 261 -----------------------------------------------------------------E---------PS--- 263 (534)
T ss_pred -----------------------------------------------------------------C---------CC---
Confidence 0 00
Q ss_pred cchhHHHhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCC
Q 000971 712 ESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGES 791 (1206)
Q Consensus 712 ~~~g~~~L~~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1206)
T Consensus 264 -------------------------------------------------------------------------------- 263 (534)
T COG4172 264 -------------------------------------------------------------------------------- 263 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCCccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEE
Q 000971 792 GEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTA 871 (1206)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~a 871 (1206)
..+ . ...+..|..++.+||...++.+.++-.. ..+...++++||++.++||.+|
T Consensus 264 ----g~~-------------~-------p~~~~~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlG 317 (534)
T COG4172 264 ----GDP-------------P-------PLPEDAPVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLG 317 (534)
T ss_pred ----CCC-------------C-------CCCCCCCceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEE
Confidence 000 0 0000122345566665555544322111 1133579999999999999999
Q ss_pred EEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc------ccccceEEEeecCCC--CCCCCCHHHHHHHhhhhcC
Q 000971 872 LMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ------ETFARISGYCEQNDI--HSPFVTVYESLLYSAWLRL 943 (1206)
Q Consensus 872 l~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~a~lr~ 943 (1206)
|+|.||||||||-.+|.+...+ +|+|.++|.++.. ...++.+-.|+||+. +.|.+||.+-+.=+..+..
T Consensus 318 lVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~ 394 (534)
T COG4172 318 LVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394 (534)
T ss_pred EEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcC
Confidence 9999999999999999987653 5999999998653 235678899999985 6799999998877665554
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 000971 944 PPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022 (1206)
Q Consensus 944 ~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~ 1022 (1206)
+ ..+..+++++|.++|+.+||++. .+++ +..+|||||||++|||||+-+|++++||||||+||-.-+..|+++
T Consensus 395 ~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~L 468 (534)
T COG4172 395 P-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL 468 (534)
T ss_pred C-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHH
Confidence 4 46788999999999999999874 4444 568999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1023 VRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1023 l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|+++.+ .|.+-++++||.. -+..+||+|++|++ |++|..|+.
T Consensus 469 Lr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 469 LRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred HHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 999965 4999999999986 47789999999985 799999995
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-58 Score=563.87 Aligned_cols=201 Identities=22% Similarity=0.303 Sum_probs=165.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC-c-
Confidence 488999998773 24699999999999999999999999999999999998663 479999854 1
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHH
Q 000971 908 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGq 985 (1206)
..+||++|+. .+++.+||+|++.+....+. .... ...++++++.+++.+ ..++.+ ..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 67788999999987643221 1111 123557899999964 456653 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEE-EEc
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YVG 1064 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~-~~g 1064 (1206)
||||+||++|+.+|++|||||||+|||+.+...+++.|+++. | |||++||++. .+...||++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999987 5778899999998767766 455
Q ss_pred C
Q 000971 1065 P 1065 (1206)
Q Consensus 1065 ~ 1065 (1206)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=560.80 Aligned_cols=198 Identities=18% Similarity=0.265 Sum_probs=165.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|...+ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 489999998874 23599999999999999999999999999999999998653 4799999873
Q ss_pred CcccccceEEEeecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHH
Q 000971 908 KQETFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgG 984 (1206)
+.+||++|++. +.+.+|++|++.+.. .. . ..++.++++++.+++. +..+..+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 45899999864 456799999986421 11 1 1134578999999994 5666664 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEE-EE
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YV 1063 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~-~~ 1063 (1206)
||||++||++|+.+|+||||||||+|||+.+...+++.|+++ +.|||++||++. .+...+|++++|++ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999876 459999999987 57788999999996 5665 77
Q ss_pred cCC
Q 000971 1064 GPL 1066 (1206)
Q Consensus 1064 g~~ 1066 (1206)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=558.93 Aligned_cols=201 Identities=20% Similarity=0.277 Sum_probs=164.7
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|+++.+. ++.+|+|||+.|++|+++||+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECCc--
Confidence 488999998763 24699999999999999999999999999999999998653 4799998541
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHH
Q 000971 908 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGq 985 (1206)
..+||++|+. .+++.+||.|++.+...... .... +..+.++++.+++.+ ..+..+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 47788999999987642211 1111 123567899999964 456653 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEE-EEc
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YVG 1064 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~-~~g 1064 (1206)
||||+||++|+.+|++|||||||+|||+.+...+++.|+++. .|||++||++. .+...+|++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999986 5778899999998767766 445
Q ss_pred C
Q 000971 1065 P 1065 (1206)
Q Consensus 1065 ~ 1065 (1206)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=545.40 Aligned_cols=211 Identities=20% Similarity=0.239 Sum_probs=173.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|+++.++ + ..|+++||+|++||++||+||||||||||+++|+|...+ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 478889887663 1 258999999999999999999999999999999998663 47999885
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
..+||++|+..+.+.+||+|++.+.... ... ...++++++.++|.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998888889999999874211 111 124688999999998888774 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |.|||+++||+. .+...+|++++|+ | ++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 5778899999996 3 77777764
Q ss_pred Ccch---hHHHHHHHhC
Q 000971 1067 GRHS---CQLISYFEAI 1080 (1206)
Q Consensus 1067 ~~~~---~~~~~yf~~~ 1080 (1206)
.... ..+-.|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 3221 2334566665
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-55 Score=545.12 Aligned_cols=197 Identities=21% Similarity=0.358 Sum_probs=161.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++ ++.+|+||||.|++|+++||+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 488999998774 24699999999999999999999999999999999998653 4799998741
Q ss_pred CcccccceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHH
Q 000971 908 KQETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgG 984 (1206)
..+||++|+. .+.+..|+.+++.. .. .......+.++|+.+++.. ..++.+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34456677776531 11 1122346889999999963 566664 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEE-EE
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YV 1063 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~-~~ 1063 (1206)
|||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ .| |||++||++. .+...||++++|.+ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 34 9999999986 57788999999986 6765 88
Q ss_pred cCC
Q 000971 1064 GPL 1066 (1206)
Q Consensus 1064 g~~ 1066 (1206)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-54 Score=538.90 Aligned_cols=202 Identities=24% Similarity=0.333 Sum_probs=164.7
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++ ++.+|+||||.|++|+++||+|||||||||||++|+|...+ .+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCCc
Confidence 488999998774 24699999999999999999999999999999999997653 4799988 4321
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHH
Q 000971 908 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGq 985 (1206)
.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++.+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 5788899999998753211 111 1133578889999986 4566654 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe-cCcEEEEEc
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-RGGQEIYVG 1064 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~-~gg~~~~~g 1064 (1206)
||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|||++||++. .+...+|++++|. +|.-+.|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999986 5778899999997 554455667
Q ss_pred CC
Q 000971 1065 PL 1066 (1206)
Q Consensus 1065 ~~ 1066 (1206)
..
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 64
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-57 Score=559.59 Aligned_cols=346 Identities=34% Similarity=0.559 Sum_probs=293.5
Q ss_pred ceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC-eeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000971 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 931 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 931 (1206)
++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999987653 3579999999987655677889999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCC-CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000971 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010 (1206)
Q Consensus 932 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~-~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsg 1010 (1206)
+|||.|++.++.+...+.+++++.++++++.+||.+++|+.+|.++ .++|||||||||+||+||+.+|+||||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999999888777778888899999999999999999999754 578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcccCCCCC
Q 000971 1011 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGY 1090 (1206)
Q Consensus 1011 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~~~~~~~~~yf~~~~g~~~~~~~~ 1090 (1206)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|+|+. +++.+||+++ |. +||++.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~-g~-~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL-GH-PCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHc-CC-CCCCCC
Confidence 999999999999999988899999999999888999999999998 5799999996 5789999998 55 599999
Q ss_pred CccceeeeeeccchhhhcC-----CCHHHHHhhcHHHHHHHHHHHHhcCCCCC---CCCCCCCCccCCcHHHHHHHHHHH
Q 000971 1091 NPATWMLEVTASSQEVALG-----VDFNDIFRCSELYRRNKALIEELSKPTPG---SKDLYFPTQYSQSAFTQFMACLWK 1162 (1206)
Q Consensus 1091 npa~~~l~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~l~~r 1162 (1206)
|||||++|+++...+.... .++.+.|+.++.+++..+.+.....+.+. .......+.|..+|+.|+..|++|
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 9999999998754322111 23455666665554433332211111111 111112346789999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcC
Q 000971 1163 QHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTLKEPRS 1205 (1206)
Q Consensus 1163 ~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~ 1205 (1206)
+++++||||.++.+|+++.+++|+++|++||+++++..+++++
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~ 392 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNI 392 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999988776653
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=553.66 Aligned_cols=368 Identities=27% Similarity=0.465 Sum_probs=290.3
Q ss_pred CCcEEEEEeeEEEEecchhh----------------hhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhc
Q 000971 825 EPHSLTFDEVVYSVDMPQEM----------------KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~----------------~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~ 888 (1206)
.+.++.|.|++|.++..... +......+++.+|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 35789999999998754200 00011223567999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc
Q 000971 889 GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968 (1206)
Q Consensus 889 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~ 968 (1206)
|+..++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+...+.+++++.++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876544689999999876533 345689999999999999999999999888766555666677889999999999999
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhc
Q 000971 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAF 1048 (1206)
Q Consensus 969 ~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~ 1048 (1206)
+|+.+|....++||||||||++||+||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999887778999999999999999999999999999999999999999999999998889999999999997789999
Q ss_pred CeEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcccCCCCCCccceeeeeeccchhhh-----cC----CCHHHHHhhc
Q 000971 1049 DELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVA-----LG----VDFNDIFRCS 1119 (1206)
Q Consensus 1049 d~v~ll~~gg~~~~~g~~~~~~~~~~~yf~~~~g~~~~~~~~npa~~~l~~~~~~~~~~-----~~----~~~~~~~~~s 1119 (1206)
|++++|++ |+++|.|+. +++++||+++ |. +||+++|||||++|+++...... .. ....+.|+..
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999985 799999996 5899999998 55 59999999999999987532110 00 0122334321
Q ss_pred HHHHHHHHHHHHh--cC-CCC-----CCCCCC-CCCccCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Q 000971 1120 ELYRRNKALIEEL--SK-PTP-----GSKDLY-FPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGS 1190 (1206)
Q Consensus 1120 ~~~~~~~~~~~~~--~~-~~~-----~~~~~~-~~~~~~~~~~~q~~~l~~r~~~~~~R~~~~~~~r~~~~~~~~l~~g~ 1190 (1206)
. ..+....++.. .. ... ..+... ....+.++||+|+.+|++|++++ ||++.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111110 00 000 001000 11235678999999999999988 99999999999999999999999
Q ss_pred HhccCCCCCCCCCc
Q 000971 1191 LFWDMGSKTLKEPR 1204 (1206)
Q Consensus 1191 ~f~~~~~~~~~~~~ 1204 (1206)
+||+++ ..++|+
T Consensus 426 lf~~~~--~~~~~~ 437 (659)
T PLN03211 426 MWWHSD--FRDVQD 437 (659)
T ss_pred HHhcCC--HHHHHH
Confidence 999985 344444
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=494.54 Aligned_cols=449 Identities=22% Similarity=0.343 Sum_probs=349.9
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHI 238 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1206)
...++|+|||+.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.+||.+.....++ .-|+.|.|+-.++
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 4568999999999999999999999999999999999999998 99999999998766554 4589999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
|+|||.|||.++........ . + +..+.+..+..+|+.+|+....++.|+
T Consensus 96 p~LsVaeNifLgre~~~~~g---~------------------i---------d~~~m~~~A~~~l~~lg~~~~~~~~v~- 144 (500)
T COG1129 96 PNLSVAENIFLGREPTRRFG---L------------------I---------DRKAMRRRARELLARLGLDIDPDTLVG- 144 (500)
T ss_pred CCccHHHHhhcccccccCCC---c------------------c---------CHHHHHHHHHHHHHHcCCCCChhhhhh-
Confidence 99999999988654322100 0 0 011223456778999999755788887
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
.||+||||-|.||+|+..+++|++|||||+.|+...+..+++.++++. ..+..|+.|+|..+|++++||+|.||
T Consensus 145 ----~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk--~~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 145 ----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK--AQGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 499999999999999999999999999999999999999999999985 35777888999999999999999999
Q ss_pred cCCeEEEecCh-HHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHh
Q 000971 399 SDGQIVYQGPR-ELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477 (1206)
Q Consensus 399 ~~G~iv~~G~~-~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 477 (1206)
.||+++..++. .+. +.+++.+
T Consensus 219 RDG~~v~~~~~~~~~--------------------------------------------~~~~lv~-------------- 240 (500)
T COG1129 219 RDGRVVGTRPTAAET--------------------------------------------SEDELVR-------------- 240 (500)
T ss_pred eCCEEeeecccccCC--------------------------------------------CHHHHHH--------------
Confidence 99999877652 211 0000000
Q ss_pred hcCCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhH
Q 000971 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIY 557 (1206)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~ 557 (1206)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHH
Q 000971 558 AGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFF 637 (1206)
Q Consensus 558 ~g~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff 637 (1206)
.|+|-
T Consensus 241 -------------------------------------------------------------------~MvGr-------- 245 (500)
T COG1129 241 -------------------------------------------------------------------LMVGR-------- 245 (500)
T ss_pred -------------------------------------------------------------------HhhCc--------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCccchhHH
Q 000971 638 KQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQ 717 (1206)
Q Consensus 638 ~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~ 717 (1206)
++. ..|
T Consensus 246 -----------------------------------------------------------~~~-~~~-------------- 251 (500)
T COG1129 246 -----------------------------------------------------------ELE-DLF-------------- 251 (500)
T ss_pred -----------------------------------------------------------chh-hhc--------------
Confidence 000 000
Q ss_pred HhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCCccC
Q 000971 718 VLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISG 797 (1206)
Q Consensus 718 ~L~~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1206)
+
T Consensus 252 ----------------------------------------~--------------------------------------- 252 (500)
T COG1129 252 ----------------------------------------P--------------------------------------- 252 (500)
T ss_pred ----------------------------------------c---------------------------------------
Confidence 0
Q ss_pred CCCCccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCC
Q 000971 798 RNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSG 877 (1206)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sG 877 (1206)
. . . .. ...+..+++++++. ...++||||++++||++||-|-=|
T Consensus 253 -----------~-~-~-~~------~~~~~~l~v~~l~~-----------------~~~~~dvSf~vr~GEIlGiaGLvG 295 (500)
T COG1129 253 -----------E-P-P-EE------GIGEPVLEVRNLSG-----------------GGKVRDVSFTVRAGEILGIAGLVG 295 (500)
T ss_pred -----------c-c-c-cc------CCCCcEEEEecCCC-----------------CCceeCceeEEeCCcEEEEecccc
Confidence 0 0 0 00 00011244454431 125899999999999999999999
Q ss_pred CcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecC---CCCCCCCCHHHHHHHhhhhcCC-C-CCC
Q 000971 878 AGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQN---DIHSPFVTVYESLLYSAWLRLP-P-EVD 948 (1206)
Q Consensus 878 aGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~---~~~~~~~Tv~e~l~~~a~lr~~-~-~~~ 948 (1206)
||+|-|+++|.|... ..+|+|.+||.+.... ..+..++||+.+ +-++..++|.+|+.++...+.. . -++
T Consensus 296 aGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~ 373 (500)
T COG1129 296 AGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLID 373 (500)
T ss_pred CCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccC
Confidence 999999999999544 3479999999976432 345578999986 4568889999999887332322 1 245
Q ss_pred HHHHHHHHHHHHHHcCCccc-cccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000971 949 SETRKMFIEEVMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027 (1206)
Q Consensus 949 ~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~ 1027 (1206)
....++.+++..+.+++... .+.. +..||||.+|+|.|||.|..+|+||||||||.|+|.-+..+|.+++++++
T Consensus 374 ~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA 448 (500)
T COG1129 374 RRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELA 448 (500)
T ss_pred hHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHH
Confidence 56666788999999998743 2233 45799999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 1028 ~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
++|.+||++|-+.. |+...||||++|++ |+++..
T Consensus 449 ~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e 482 (500)
T COG1129 449 AEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGE 482 (500)
T ss_pred HCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEE
Confidence 99999999999886 89999999999995 677653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=514.87 Aligned_cols=200 Identities=20% Similarity=0.283 Sum_probs=158.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++ +++.+|+||||+|++|+++||+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 588999998873 123599999999999999999999999999999999998663 4799988752
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqr 986 (1206)
..+||++|+.. ..+++.++..+......+ ... ++.+.++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 35899999752 345666654322111111 111 245788999999974 55555 357999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEE-EEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~-~~g~ 1065 (1206)
|||+||++|+.+|++|||||||+|||+.+...+++.|++. . .|||++||++. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888764 3 49999999987 57788999999985 6777 7775
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 3
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-51 Score=488.31 Aligned_cols=498 Identities=25% Similarity=0.303 Sum_probs=334.5
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1206)
.+++|+|+|+.+.+|+.++|+|+||||||||||+|+|.+.|+ +|+|...+ .-.++|++|+....+..||
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCccH
Confidence 467999999999999999999999999999999999999988 99998764 2379999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHH---HH-HHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV---YM-KAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~---~~-~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
.+.+.-+... .++...+...... ..++++... +. .....++.+.+..+..+|..||+..- ++.++
T Consensus 84 ~~~v~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~-- 152 (530)
T COG0488 84 LDYVIEGFGE-----LRELLAELEEAYA---LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS-- 152 (530)
T ss_pred HHHHHhhhHH-----HHHHHHHHHHHHH---hcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh--
Confidence 9999876431 1222222222111 122221111 11 11122334556778889999999876 66655
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
.||||||.||++|++|+.+|++|+|||||++||..+..++-+.|++. .+ ++|.++|++..+-+.|++|+-++
T Consensus 153 ---~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 153 ---SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred ---hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEec
Confidence 69999999999999999999999999999999999999999988752 34 66669999999999999999999
Q ss_pred CCeE-EEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhh
Q 000971 400 DGQI-VYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDEL 478 (1206)
Q Consensus 400 ~G~i-v~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l 478 (1206)
.|++ .|.|.++...+- -.....++ ...++. ...++
T Consensus 225 ~g~l~~y~Gny~~~~~~--------------------r~~~~~~~------------------~~~~~~------~~~~~ 260 (530)
T COG0488 225 RGKLTPYKGNYSSYLEQ--------------------KAERLRQE------------------AAAYEK------QQKEL 260 (530)
T ss_pred CCceeEecCCHHHHHHH--------------------HHHHHHHH------------------HHHHHH------HHHHH
Confidence 9987 577876643321 00000000 000000 00000
Q ss_pred cCCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhHH
Q 000971 479 RTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYA 558 (1206)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~ 558 (1206)
......+.| ... .. .. .
T Consensus 261 ------------------------~~~~~~i~r---------------~~~--------------~~---~~-~------ 277 (530)
T COG0488 261 ------------------------AKEQEWIRR---------------GKA--------------AA---SK-A------ 277 (530)
T ss_pred ------------------------HHHHHHHHH---------------HHh--------------cc---ch-H------
Confidence 000000000 000 00 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHH
Q 000971 559 GALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFK 638 (1206)
Q Consensus 559 g~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~ 638 (1206)
|+-
T Consensus 278 -----------------------------k~a------------------------------------------------ 280 (530)
T COG0488 278 -----------------------------KKA------------------------------------------------ 280 (530)
T ss_pred -----------------------------HHH------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCccchhHHH
Q 000971 639 QYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQV 718 (1206)
Q Consensus 639 ~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~ 718 (1206)
.+ ....
T Consensus 281 ------------~s--------------------------------------------------------------r~k~ 286 (530)
T COG0488 281 ------------KS--------------------------------------------------------------RIKR 286 (530)
T ss_pred ------------HH--------------------------------------------------------------HHHH
Confidence 00 0000
Q ss_pred hhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCCccCC
Q 000971 719 LKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGR 798 (1206)
Q Consensus 719 L~~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1206)
+.... .. ..-..+.. .. ... ....
T Consensus 287 l~k~~--~~-------------------------~~~~~~~~------------~~------~~~----------~~~f- 310 (530)
T COG0488 287 LEKLE--AR-------------------------LAEERPVE------------EG------KPL----------AFRF- 310 (530)
T ss_pred HHHHH--hh-------------------------hhhccccc------------cc------ccc----------eeec-
Confidence 00000 00 00000000 00 000 0000
Q ss_pred CCCccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCC
Q 000971 799 NSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGA 878 (1206)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGa 878 (1206)
.. .. .+..+..+.++|+++.++ +++.+++++||.|.+|+.+||+||||+
T Consensus 311 ------------~~--~~-----~~~g~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~ 359 (530)
T COG0488 311 ------------PP--PG-----KRLGKLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGA 359 (530)
T ss_pred ------------cC--Cc-----ccCCCeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCC
Confidence 00 00 011234689999998874 225799999999999999999999999
Q ss_pred cHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHH
Q 000971 879 GKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIE 957 (1206)
Q Consensus 879 GKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~ 957 (1206)
||||||++|+|...+ .+|.|.+.-. -.+||..|+. .+.+..|+.|.+.-.. + +.. ...+.
T Consensus 360 GKSTLlk~l~g~~~~--~~G~v~~g~~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~----~-~~~----e~~~r 420 (530)
T COG0488 360 GKSTLLKLLAGELGP--LSGTVKVGET--------VKIGYFDQHRDELDPDKTVLEELSEGF----P-DGD----EQEVR 420 (530)
T ss_pred CHHHHHHHHhhhccc--CCceEEeCCc--------eEEEEEEehhhhcCccCcHHHHHHhhC----c-ccc----HHHHH
Confidence 999999999996653 3788876431 2489999986 3347789999885321 1 111 45688
Q ss_pred HHHHHcCCccc-cccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q 000971 958 EVMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1036 (1206)
Q Consensus 958 ~~l~~l~L~~~-~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~ 1036 (1206)
..|..+++..- ..+. ++.||||||.||.+|+.++.+|.+|+|||||++||..+...+.+.|.+. ..|||+|
T Consensus 421 ~~L~~f~F~~~~~~~~-----v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~V 492 (530)
T COG0488 421 AYLGRFGFTGEDQEKP-----VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLV 492 (530)
T ss_pred HHHHHcCCChHHHhCc-----hhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEE
Confidence 89999999753 3333 4579999999999999999999999999999999999999999999875 4699999
Q ss_pred ecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 1037 IHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 1037 ~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||... +-..+++++++.+ +-..|.|.
T Consensus 493 SHDr~F-l~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 493 SHDRYF-LDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred eCCHHH-HHhhcceEEEEcC-ceeEcCCC
Confidence 999874 7788999999986 44455565
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=449.39 Aligned_cols=457 Identities=22% Similarity=0.311 Sum_probs=356.5
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHIG 239 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1206)
...+++|||+.|++||+.+|+|.|||||||||++|.|.+.|+ +|+|.++|+++.-..|+ --||+|.|+..++|
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 577999999999999999999999999999999999999998 99999999998766664 35899999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
++||.||+..+..-... .+. + ..+....++.+.+.+||+--.|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~~-~~~-------------------~-----------~~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSKG-GLI-------------------D-----------RRQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCccccc-ccc-------------------C-----------HHHHHHHHHHHHHHhCCCCCccceeec-
Confidence 99999999987642110 000 0 012334577889999999888888875
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
||=||||||.|-++|+.+|++|+|||||+-|-+....++++.|++++. .+.+|+.|+|-..|+.+.||++.||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~--~G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA--EGKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999875 35566669999999999999999999
Q ss_pred CCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 000971 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELR 479 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~ 479 (1206)
.|+++-.-++. . ..+.+++++.
T Consensus 215 ~Gkvvgt~~~~----------------~---------------------------~~t~~ela~l--------------- 236 (501)
T COG3845 215 RGKVVGTVDPV----------------A---------------------------ETTEEELAEL--------------- 236 (501)
T ss_pred CCeEEeeecCC----------------C---------------------------CCCHHHHHHH---------------
Confidence 99986432100 0 0000110000
Q ss_pred CCccccccccccccccccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhHHH
Q 000971 480 TPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAG 559 (1206)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~l~~r~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g 559 (1206)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCcChhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccCCCcHHHHHHH
Q 000971 560 ALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQ 639 (1206)
Q Consensus 560 ~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~ 639 (1206)
|+|=
T Consensus 237 ------------------------------------------------------------------MvG~---------- 240 (501)
T COG3845 237 ------------------------------------------------------------------MVGR---------- 240 (501)
T ss_pred ------------------------------------------------------------------hcCC----------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhccccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHh
Q 000971 640 YLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVL 719 (1206)
Q Consensus 640 ~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~i~~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L 719 (1206)
++.
T Consensus 241 -----------------------------------------------------------------------------~v~ 243 (501)
T COG3845 241 -----------------------------------------------------------------------------EVV 243 (501)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred hccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCCccCCC
Q 000971 720 KSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRN 799 (1206)
Q Consensus 720 ~~~~~~~~~~~~w~~~g~l~g~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1206)
. . .. ..
T Consensus 244 ----------------------------------------------~---------------~------------~~-~~ 249 (501)
T COG3845 244 ----------------------------------------------L---------------R------------VV-KP 249 (501)
T ss_pred ----------------------------------------------c---------------c------------cc-cC
Confidence 0 0 00 00
Q ss_pred CCccchhhhcccCCCCCCCCCcCCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCc
Q 000971 800 SSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 879 (1206)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaG 879 (1206)
+...+ +..+.++|++..-+. ....+++|||++++||++||.|..|-|
T Consensus 250 ---------------~~~pg------~~vL~V~~L~v~~~~------------~~~~v~~vs~~Vr~GEIvGIAGV~GNG 296 (501)
T COG3845 250 ---------------PSTPG------EVVLEVEDLSVKDRR------------GVTAVKDVSFEVRAGEIVGIAGVAGNG 296 (501)
T ss_pred ---------------CCCCC------CeEEEEeeeEeecCC------------CCceeeeeeeEEecCcEEEEEecCCCC
Confidence 00000 224777877754321 235899999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCeeEEEEEEcCccC-C---cc-cccceEEEeecCCC---CCCCCCHHHHHHHhhhhc----CCCCC
Q 000971 880 KTTLMDVLSGRKTGGYITGNITISGYPK-K---QE-TFARISGYCEQNDI---HSPFVTVYESLLYSAWLR----LPPEV 947 (1206)
Q Consensus 880 KSTLl~~L~g~~~~~~~~G~i~i~g~~~-~---~~-~~~~~~gyv~q~~~---~~~~~Tv~e~l~~~a~lr----~~~~~ 947 (1206)
-+.|+.+|+|.... .+|+|.++|.+. . .. ..+..+||||.+.. +.+.+|+.||+.+...-+ ...-.
T Consensus 297 Q~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l 374 (501)
T COG3845 297 QSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFL 374 (501)
T ss_pred HHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccccccccccc
Confidence 99999999997643 259999999985 2 21 23346899999763 468899999998764321 11135
Q ss_pred CHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000971 948 DSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027 (1206)
Q Consensus 948 ~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~ 1027 (1206)
+..+.+.+..++++.++....--.. ..+.||||++||+-+||||..+|++|++.+||-|||..+.+.|.+.|.+++
T Consensus 375 ~~~~i~~~a~~li~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r 450 (501)
T COG3845 375 DRRAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR 450 (501)
T ss_pred CHHHHHHHHHHHHHHcCccCCCCCc----chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHH
Confidence 5677788899999999987322111 146899999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1028 ~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
+.|+.|++++-+.+ ++++.+|||.+|.+ |+++...+..
T Consensus 451 ~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~ 488 (501)
T COG3845 451 DAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPE 488 (501)
T ss_pred hcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceecccccc
Confidence 99999999999997 89999999999995 7888777654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=373.91 Aligned_cols=214 Identities=26% Similarity=0.379 Sum_probs=190.4
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||+.++. ...+|+|||++|++||+++|+|||||||||||+||.++..+ .+|+|.++|.+..
T Consensus 3 i~i~~l~K~fg-------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSFG-------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEeC-------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEecc
Confidence 67888887763 56899999999999999999999999999999999998764 4899999996542
Q ss_pred ----cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 909 ----QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 909 ----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
-...|+.+|+|+|+..+||++||.||+.++-..- ...++++.++...++|+.+||.+.+|.+ +..||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2346788999999999999999999999874322 2456788888899999999999999998 4579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
|||||+|||||+.+|+++++|||||+|||+...+|++.+++++++|.|+||+||.+.. ..+.+|||+.|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999874 6678999999985 7999999
Q ss_pred CC
Q 000971 1065 PL 1066 (1206)
Q Consensus 1065 ~~ 1066 (1206)
+.
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 75
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=358.71 Aligned_cols=222 Identities=26% Similarity=0.418 Sum_probs=189.0
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC----CccceEEEecCCCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----VPERTAAYISQHDNHI 238 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~----~~~~~~~yv~Q~d~~~ 238 (1206)
...++|+|||+.|++||+++|+|||||||||||++|.|+..++ +|+|.++|.++... ..++.+|+|+|+..+|
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 4578999999999999999999999999999999999999988 99999999766422 1257899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
|++||.||+..+...- ... ...+++..+..+|+.+||.+.+|..
T Consensus 90 PHlTvleNv~lap~~v---------~~~------------------------~k~eA~~~A~~lL~~VGL~~ka~~y--- 133 (240)
T COG1126 90 PHLTVLENVTLAPVKV---------KKL------------------------SKAEAREKALELLEKVGLADKADAY--- 133 (240)
T ss_pred ccchHHHHHHhhhHHH---------cCC------------------------CHHHHHHHHHHHHHHcCchhhhhhC---
Confidence 9999999999874311 001 1123455677899999999999855
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
+..|||||||||+|||||+.+|+++++|||||+|||+...++.+.++++++ . +.|.+.++|....+-+.+|+|+.|
T Consensus 134 --P~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-e-GmTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 134 --PAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-E-GMTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred --ccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-c-CCeEEEEechhHHHHHhhheEEEe
Confidence 457999999999999999999999999999999999999999999999986 3 455555889999999999999999
Q ss_pred cCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHh
Q 000971 399 SDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE 435 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~ 435 (1206)
++|+++..|+++++ |..|.+....+|+..
T Consensus 210 d~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 210 DQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 99999999999876 456766667777654
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=391.77 Aligned_cols=224 Identities=29% Similarity=0.423 Sum_probs=194.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||+..+. .++.+|+||||+|++|+++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeC
Confidence 356778876663 136799999999999999999999999999999999998774 589999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 908 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
.. ..+++.+||++|++.+++.+||+|+|.|.+.++.+.. +..+++++++++.++|.+..+.. +++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHH
Confidence 54 3567789999999999999999999999999986542 44566799999999999866555 45799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
||||+||+||+++|+||||||||+|||+.++..+++.|++++++| +|||++||+++ ++...||+|++|++ |++++.|
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g 219 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEG 219 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeC
Confidence 999999999999999999999999999999999999999999887 89999999997 78888999999985 7999999
Q ss_pred CCCcchhHHHHHHHh
Q 000971 1065 PLGRHSCQLISYFEA 1079 (1206)
Q Consensus 1065 ~~~~~~~~~~~yf~~ 1079 (1206)
+. .++...+..
T Consensus 220 ~~----~~l~~~~~~ 230 (293)
T COG1131 220 TP----EELKEKFGG 230 (293)
T ss_pred CH----HHHHHhhcc
Confidence 75 244444443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=375.35 Aligned_cols=219 Identities=23% Similarity=0.318 Sum_probs=193.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.+++|+..+... ..+...+|+|||+.|++||++||+|.||||||||++++.++..| .+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecc
Confidence 5788888665421 11245799999999999999999999999999999999998764 4899999997653
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 909 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
. ..+|+.+|+++|+..++...||+||+.|...+.. .++++.+++|.++|+.+||.+.++++ +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 2 2357889999999999999999999999876653 67889999999999999999999988 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
|||||||+|||||+.+|+||++|||||+|||.+...|++.|+++.++ |.||+++||+++ -+-+.||||.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999766 999999999987 37789999999995 7999
Q ss_pred EEcCCC
Q 000971 1062 YVGPLG 1067 (1206)
Q Consensus 1062 ~~g~~~ 1067 (1206)
..|++.
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999974
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=359.90 Aligned_cols=231 Identities=26% Similarity=0.377 Sum_probs=200.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+++++|+.++ +.+.|++||+++|++||+++||||||+||||||++|.|...+ .+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcch
Confidence 58899998765 457899999999999999999999999999999999998875 489999999886
Q ss_pred Cc------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCC
Q 000971 908 KQ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSG 980 (1206)
Q Consensus 908 ~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~~~ 980 (1206)
.+ ...++++|+++|+-.+|..+||+||+.|. +|.....+++..++.+..-|+.+||... ++.. ++.
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp--lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP--LREHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhhee--hHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 43 13567899999999999999999999986 3444566778888889999999999987 6666 568
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
|||||+||++|||||+.+|+|||+||||+||||.++..+-++|+++.++ |.|++++|||.. +++..+||+++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999877 999999999997 68999999999995 79
Q ss_pred EEEEcCCCcc----hhHHHHHHHhCCC
Q 000971 1060 EIYVGPLGRH----SCQLISYFEAIPG 1082 (1206)
Q Consensus 1060 ~~~~g~~~~~----~~~~~~yf~~~~g 1082 (1206)
++..|++.+- -.-+.+||.+..+
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~~ 250 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIRD 250 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCCC
Confidence 9999997421 1134467776543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=365.98 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=182.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++++++.+. ...+|+|||++|.+||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 467888888774 25799999999999999999999999999999999998774 489999999987
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ....+|||+|++.++|..||+||+.|+..++. .+++++++.+.+.|+.+||.+..+++ +..|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 32 24568999999999999999999999876653 45566777899999999999999998 4689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
||+|||||+.+|+||+||||.++||+.++..+++.|.++.+ +++|||++|||.+ |...++|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999875 4899999999997 678889999999864
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=388.48 Aligned_cols=201 Identities=20% Similarity=0.263 Sum_probs=155.7
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.|+||+|.++. +..++++++|-+.+++.+|+|||||+||||||+++.|...+ ..|.|.-.-+.
T Consensus 389 vi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~- 453 (614)
T KOG0927|consen 389 VIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN- 453 (614)
T ss_pred eEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc-
Confidence 5889999988752 22589999999999999999999999999999999997763 36766433221
Q ss_pred CcccccceEEEeecC--CCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 908 KQETFARISGYCEQN--DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~--~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
.+++..|. +.+.-..++-|+++=. . ..+.+.+.+..+|..+||+...+... .+.||+||
T Consensus 454 -------~~~~y~Qh~~e~ldl~~s~le~~~~~----~----~~~~~~e~~r~ilgrfgLtgd~q~~p----~~~LS~Gq 514 (614)
T KOG0927|consen 454 -------KLPRYNQHLAEQLDLDKSSLEFMMPK----F----PDEKELEEMRSILGRFGLTGDAQVVP----MSQLSDGQ 514 (614)
T ss_pred -------cchhhhhhhHhhcCcchhHHHHHHHh----c----cccchHHHHHHHHHHhCCCccccccc----hhhccccc
Confidence 22333343 2233345666766421 0 11334566889999999995443331 46899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|+||.+|+.++..|.||+|||||+|||..+...+-+.|.+. ..+||+++||... |-+.++++.+..+++...+.|.
T Consensus 515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCcc
Confidence 99999999999999999999999999999999988888764 4589999999874 7788999999999999999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 591 i 591 (614)
T KOG0927|consen 591 I 591 (614)
T ss_pred H
Confidence 4
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=368.86 Aligned_cols=217 Identities=26% Similarity=0.411 Sum_probs=185.8
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|++++|+. + .+|+||||++++|+++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccccc
Confidence 5889999999851 2 599999999999999999999999999999999997663 489999999886
Q ss_pred CcccccceEEEeecCCCC--CCCCCHHHHHHHhhhhcCC--CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQETFARISGYCEQNDIH--SPFVTVYESLLYSAWLRLP--PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~--~~~~Tv~e~l~~~a~lr~~--~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
.+..-+..+|||||...+ ...+||+|-+..+..-+.. .... ++.++.|+++|+.+|+.+++|+.+| .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 654334679999996533 2238999999876433321 1122 3336789999999999999999976 6999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
||+||+.|||||+.+|++|+|||||+|+|+.++..++++|++++++|+|||+++||++ .+.+.||+|+.|+ +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEec
Confidence 9999999999999999999999999999999999999999999989999999999998 5899999999997 489999
Q ss_pred cCCCc
Q 000971 1064 GPLGR 1068 (1206)
Q Consensus 1064 g~~~~ 1068 (1206)
|++.+
T Consensus 220 G~~~~ 224 (254)
T COG1121 220 GPPEE 224 (254)
T ss_pred cChhh
Confidence 99753
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=371.25 Aligned_cols=218 Identities=28% Similarity=0.395 Sum_probs=189.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++.+|+++.|+ ++.+|+||||++++|++++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCch
Confidence 368899999885 45799999999999999999999999999999999997663 479999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCC-CCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE-VDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ..+++.+|||||.......+||+|.+.++..-+.... ...++.++.|+++|+.+++.+++++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 54 4567889999999988889999999998754322211 123344457999999999999999985 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||+.|||||+++|+||+||||||+||...+..|+++++++++ +|+|||+++||++. ...+||++++|++ |++++
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 999999999999999999999999999999999999999999985 49999999999984 7889999999985 79999
Q ss_pred EcCCC
Q 000971 1063 VGPLG 1067 (1206)
Q Consensus 1063 ~g~~~ 1067 (1206)
.|++.
T Consensus 220 ~G~p~ 224 (258)
T COG1120 220 QGTPE 224 (258)
T ss_pred ecCcc
Confidence 99974
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=359.42 Aligned_cols=208 Identities=28% Similarity=0.408 Sum_probs=175.6
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
..+||+-.+.... ....+|++||+.|++||++||||||||||||||++|.|...+ .+|.|.++|.+...
T Consensus 3 ~~~~v~k~y~~~~---------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~ 71 (226)
T COG1136 3 ELKNVSKIYGLGG---------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTK 71 (226)
T ss_pred EEeeeEEEeccCC---------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCc
Confidence 4677776554321 125799999999999999999999999999999999998775 48999999976532
Q ss_pred ------cc-ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccc-cccCCCCCCCC
Q 000971 910 ------ET-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ-SLVGLPGVSGL 981 (1206)
Q Consensus 910 ------~~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~~g~~~~~~L 981 (1206)
.. .++.+|||+|+..+.|++||.||+.+...+... .....++.++++++.+||.+..+ .. +..|
T Consensus 72 l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eL 143 (226)
T COG1136 72 LSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSEL 143 (226)
T ss_pred CCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chhc
Confidence 12 345799999999999999999999987655432 22256677899999999997666 54 4579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
||||||||+|||||+.+|+||+.||||.+||+.++..|++++++++++ |+|||++||+|. +...|||++.|.+|+
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~ 219 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGK 219 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCe
Confidence 999999999999999999999999999999999999999999999866 999999999974 788999999999754
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=357.42 Aligned_cols=213 Identities=25% Similarity=0.361 Sum_probs=191.5
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++|+||+..|. .+.+++|+|++|++||++.++|||||||||+|++|.+...+ .+|+|+|||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 57888887663 45799999999999999999999999999999999998874 4899999999875
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc--ccccccCCCCCCCCCH
Q 000971 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP--LIQSLVGLPGVSGLST 983 (1206)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~~g~~~~~~LSg 983 (1206)
. ...||.+|||-|+-.++|++||.||+.+--.+. ..++++.+++++|+|+++||.+ +.+++ +..|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 346889999999999999999999998765554 4678888999999999999985 77877 568999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
||+|||.+||||+++|+||+||||.++|||.++..+++.++++.++ |+|||++|||.. |.+.+.|||++|+ +|+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999998765 999999999997 7899999999998 579988
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
++++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 8875
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=348.65 Aligned_cols=201 Identities=27% Similarity=0.388 Sum_probs=184.9
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc--ccccceEEEeecCCCCCCCCCH
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTV 931 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~~Tv 931 (1206)
.++++||||.++.||++||+|+|||||||+|++|++...+ .+|.|.+||.+... ...++.+|.++.+-.++..+|+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 3589999999999999999999999999999999998774 48999999998543 4567889999988889999999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000971 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1206)
Q Consensus 932 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgL 1011 (1206)
+|||.|.+.+. +....+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 99999999886 45567778899999999999999999976 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1012 DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1012 D~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|..+...+.+.++++.++|++||+++|.++ ++.+.||++++|++ |++++.|..
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 999999999999999989999999999997 78889999999997 799999986
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=352.60 Aligned_cols=221 Identities=26% Similarity=0.325 Sum_probs=188.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||+-.|+ +++++|+|||+.|++||++||+|||||||||||++|.|... +.+|+|.++|..+
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478899987764 35689999999999999999999999999999999999766 3489999999754
Q ss_pred Cc------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC-----CCCCHHHHHHHHHHHHHHcCCccccccccCCC
Q 000971 908 KQ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976 (1206)
Q Consensus 908 ~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~ 976 (1206)
.. ..+++.+||++|++.+.+.++|.+|++.+..-+.+ -....++.+..+-++|+.+|+.+.+-+..
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 34678899999999999999999999876432221 12333445566788999999999888774
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
..|||||+|||+|||||+.+|+||+.|||+++|||.++..||+.|++++++ |.|||++.||... ..++|||++-|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 479999999999999999999999999999999999999999999999754 9999999999874 568999999998
Q ss_pred cCcEEEEEcCCCcc
Q 000971 1056 RGGQEIYVGPLGRH 1069 (1206)
Q Consensus 1056 ~gg~~~~~g~~~~~ 1069 (1206)
. |+++|.||..+-
T Consensus 223 ~-G~ivfDg~~~el 235 (258)
T COG3638 223 A-GRIVFDGPASEL 235 (258)
T ss_pred C-CcEEEeCChhhh
Confidence 5 799999997643
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=335.90 Aligned_cols=213 Identities=25% Similarity=0.331 Sum_probs=184.4
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.|+||+..|+. ...+|+||||.|++||++-|+|||||||||||++|.+...+ ..|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeecc
Confidence 578888877652 35699999999999999999999999999999999996653 4799999999864
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 909 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
. ...+|.+|+|+|+..+.+..||+||+.|...+. ..+.++.+++|.++|+.+||.+.++.+ +..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 235789999999999999999999999986655 345667788899999999999999887 46899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||+||++||||++.+|++|+.||||-+||+..+..||+++.++...|.|||+.||+.+. +-.+-.|++.|.+ |+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEe
Confidence 999999999999999999999999999999999999999999999999999999999542 3445568888885 68776
Q ss_pred EcC
Q 000971 1063 VGP 1065 (1206)
Q Consensus 1063 ~g~ 1065 (1206)
...
T Consensus 218 d~~ 220 (223)
T COG2884 218 DES 220 (223)
T ss_pred ccc
Confidence 554
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=359.29 Aligned_cols=225 Identities=28% Similarity=0.361 Sum_probs=196.1
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDN 236 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~ 236 (1206)
...++|+|||+.|++|++.+|+|+||||||||++++.++-.|+ +|+|.++|.++..+.. ++.+|+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 4577999999999999999999999999999999999999998 9999999998876653 468999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1206)
++...||.||+.|..+..+.. ..+.+.++.++|+.+||++.+|..
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~~y- 138 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKADRY- 138 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhccC-
Confidence 999999999999998776531 113455688899999999888754
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
+.+|||||||||+|||||+.+|+||+.|||||+|||.|+..|.+.|+++.... +.||+.++|-++-+-+.||+|.
T Consensus 139 ----P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 139 ----PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred ----chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhhe
Confidence 55799999999999999999999999999999999999999999999987755 5666668899999999999999
Q ss_pred EEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhcC
Q 000971 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTS 438 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~s 438 (1206)
||++|++++.|+..++ |..|.+.-...|+.+...
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~~ 247 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLE 247 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhcc
Confidence 9999999999999987 455766666677665543
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=358.78 Aligned_cols=205 Identities=28% Similarity=0.442 Sum_probs=185.8
Q ss_pred ceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc---cCCc-ccccceEEEeecCCCCCCC
Q 000971 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY---PKKQ-ETFARISGYCEQNDIHSPF 928 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~q~~~~~~~ 928 (1206)
...+++|||+.|+.||++||+|||||||||||++|||..++ ..|.|.+||. +..+ ....|.+|||+|+..++++
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 45689999999999999999999999999999999998875 4899999998 5444 3345789999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000971 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008 (1206)
Q Consensus 929 ~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPT 1008 (1206)
|||.+|+.|+..++ ...++..+.+.+|.|+|+.++|++.++++ +..|||||||||++||||+..|++|+||||.
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998776 34456677888999999999999999998 5689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 1009 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1009 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
++||+.-+..+.+.|+++.++ |.|+|++|||+. ++++.+|||++|++ |++...|+..
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 999999999999999999876 999999999997 89999999999996 7888888863
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=372.06 Aligned_cols=214 Identities=27% Similarity=0.405 Sum_probs=193.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||+..+. ...+|+|||++|++||+++|+|||||||||||++|||...+ .+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 478888887763 22299999999999999999999999999999999998774 589999999987
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
+. ....|.+++|+|+..+||+|||+||+.|+.+++ ..++++.+++|+++.+.++|.++.|++ ++.||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 65 345688999999999999999999999997766 346778889999999999999999998 468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+++|++++||||.|+||++.+..+...|+++.++ |.|+|.+|||.. |...++||+++|+ .|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998765 899999999985 8899999999999 589999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
+
T Consensus 218 p 218 (338)
T COG3839 218 P 218 (338)
T ss_pred h
Confidence 6
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=372.58 Aligned_cols=212 Identities=33% Similarity=0.469 Sum_probs=184.8
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC--CccceEEEecCCCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF--VPERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~l 241 (1206)
.+.+|+|||+.|++|++++++||||||||||||+|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 478999999999999999999999999999999999999997 99999999988653 2356899999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+|||.|.+++.+.... .....++++++.+||++..+. .+
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~-----~~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANK-----KV 134 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCc-----ch
Confidence 999999999988764210 112357889999999985444 44
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
++||+||||||+||.||+++|++|||||||+|||+.++.++.+.|++++.. ++++|+..+|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 579999999999999999999999999999999999999999999999864 4356666788889999999999999999
Q ss_pred eEEEecChHHHHHHHHh
Q 000971 402 QIVYQGPRELVLEFFES 418 (1206)
Q Consensus 402 ~iv~~G~~~~~~~~f~~ 418 (1206)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999987766543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=372.32 Aligned_cols=217 Identities=31% Similarity=0.435 Sum_probs=194.0
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc-ceEEEecCCCCCCCCCCHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 245 (1206)
+|+|+|+.|++||+++|+|||||||||||++|||+.+++ +|+|.++|.+++..+|. |.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999998 99999999999998875 88999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
|+.|+.+.++.. ..+.+.+++++.+.|+|++..|.. ++.||
T Consensus 95 Niaf~Lk~~~~~----------------------------------k~ei~~rV~eva~~L~l~~lL~r~-----P~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVP----------------------------------KAEIDKRVKEVAKLLGLEHLLNRK-----PLQLS 135 (338)
T ss_pred HhhhhhhhCCCc----------------------------------hHHHHHHHHHHHHHcCChhHHhcC-----cccCC
Confidence 999998876531 113455678899999999998865 45799
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~ 405 (1206)
|||||||++||||+.+|++++||||+|.||+..+..+...|+++-+ .-+++++.++|+..|+..++|+|.+|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~-~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE-RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH-hcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999999988644 456777779999999999999999999999999
Q ss_pred ecChHHHHHHHHhcCCCCCCCCChhHHHH
Q 000971 406 QGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1206)
Q Consensus 406 ~G~~~~~~~~f~~~G~~cp~~~~~adfl~ 434 (1206)
.|++.++. ..|.+.-+|.|+-
T Consensus 215 ~g~p~ely--------~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLELY--------ERPANLFVAGFIG 235 (338)
T ss_pred cCChHHHh--------hCccchhhhhhcC
Confidence 99999984 4677777777753
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=338.59 Aligned_cols=218 Identities=22% Similarity=0.316 Sum_probs=188.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCC---CCCeeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~---~~~~~~G~i~i~g 904 (1206)
.++.+|++++|. .+++|+|||+.|+++++|||||||||||||||++|-+.. .+-.++|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 578899998874 457999999999999999999999999999999998743 3346789999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 979 (1206)
.++.. ..+|+.+|.|+|.+..+| +|++||+.|+.++..-.+ ++.++.|++.|+...|++-........ ..
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s-a~ 148 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS-AL 148 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC-cc
Confidence 87643 346888999999999999 999999999987764332 677889999999999987544333322 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
+|||||+|||||||||+.+|+||+||||||+|||.+...|-+++.+|+ +.-|||++||.+. ......|+...+.. |+
T Consensus 149 ~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G~ 225 (253)
T COG1117 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-GE 225 (253)
T ss_pred CCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-cE
Confidence 799999999999999999999999999999999999999999999997 4699999999997 57788999999986 79
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+|.+|+.
T Consensus 226 LvE~g~T 232 (253)
T COG1117 226 LVEFGPT 232 (253)
T ss_pred EEEEcCH
Confidence 9999986
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=373.80 Aligned_cols=216 Identities=26% Similarity=0.382 Sum_probs=193.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||+..+. ...+|+|||++|++||+++|+|||||||||||++|||...+ .+|+|.++|.++
T Consensus 5 ~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 588999887663 46799999999999999999999999999999999998874 489999999987
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
... ..+|.+|+|+|+..+||+|||+||+.|+..++ ....+++.+++|+++++.++|.+++++. +..|||||+
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHH
Confidence 653 35788999999999999999999999997643 3345667888999999999999999988 467999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+.+|++|+||||.|+||..-+..++.-|+++.++ |.|.|++|||.. +.+.++|||++|++ |++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 9999999999999999999999999999999999999998755 999999999987 78899999999985 79998888
Q ss_pred CC
Q 000971 1066 LG 1067 (1206)
Q Consensus 1066 ~~ 1067 (1206)
+.
T Consensus 221 P~ 222 (352)
T COG3842 221 PE 222 (352)
T ss_pred HH
Confidence 63
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=370.83 Aligned_cols=214 Identities=28% Similarity=0.409 Sum_probs=188.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.+. .+.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEec
Confidence 588999998774 24699999999999999999999999999999999998764 489999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 908 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
.. ...++.+|||+|++.+++.+||+||+.|.+.++. .+..+...+++++++.++|.+..++.+ +.||+||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 2346779999999999999999999998765542 233444567889999999998888875 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||++||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999997 68889999999986 79999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 5
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=353.30 Aligned_cols=223 Identities=29% Similarity=0.454 Sum_probs=188.8
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCe---eCCCCCc-cceEEEecCCCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH---DMGEFVP-ERTAAYISQHDNHI 238 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~---~~~~~~~-~~~~~yv~Q~d~~~ 238 (1206)
....+++|||+.|+.||+++++|||||||||||++|||+..|+ +|.|.+||. +.+.... .|.||||+|+-.+|
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 3466899999999999999999999999999999999999998 999999999 6555443 37899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
++|||.||+.|+.+++.. + |+ ..+.+..+.++|+.+.|++.++
T Consensus 90 ~HmtVa~NIAFGl~~~~~--~-----------------p~-------------~~~~r~rv~elL~lvqL~~la~----- 132 (345)
T COG1118 90 PHMTVADNIAFGLKVRKE--R-----------------PS-------------EAEIRARVEELLRLVQLEGLAD----- 132 (345)
T ss_pred ccchHHhhhhhccccccc--C-----------------CC-------------hhhHHHHHHHHHHHhcccchhh-----
Confidence 999999999999877521 0 10 0123446788899999987665
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
+++..|||||||||++||||+-.|+||+||||+++||...+..+-+.|+++.... +.+.+.++|+.+|++++||+|++|
T Consensus 133 ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~-~~ttvfVTHD~eea~~ladrvvvl 211 (345)
T COG1118 133 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL-GVTTVFVTHDQEEALELADRVVVL 211 (345)
T ss_pred cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhh-CceEEEEeCCHHHHHhhcceEEEe
Confidence 5677899999999999999999999999999999999999999999999976544 455556899999999999999999
Q ss_pred cCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHH
Q 000971 399 SDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~ 434 (1206)
++|+|...||++++. ..|...-+..|+-
T Consensus 212 ~~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G 239 (345)
T COG1118 212 NQGRIEQVGPPDEVY--------DHPASRFVARFLG 239 (345)
T ss_pred cCCeeeeeCCHHHHh--------cCCCccceecccc
Confidence 999999999999984 3455555555543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=342.48 Aligned_cols=210 Identities=26% Similarity=0.394 Sum_probs=185.1
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1206)
.+.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||.++.+.+. ++.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 567999999999999999999999999999999999999998 9999999999987665 5889999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||.||+.+--.+++.. .++.+.+++++|+.+||+.. ...+++
T Consensus 90 ~Tv~eNIa~VP~L~~w~----------------------------------k~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 90 LTVAENIATVPKLLGWD----------------------------------KERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred ccHHHHHHhhhhhcCCC----------------------------------HHHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 99999999876655421 12345568999999999752 123467
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
++.|||||+|||.+||||+.+|+|++||||+++||+-++.++.+-++++-+.. ++||+.++|+..|++.++|+|++|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-~kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHhhhceEEEecC
Confidence 78999999999999999999999999999999999999999999888876554 45566689999999999999999999
Q ss_pred CeEEEecChHHHHH
Q 000971 401 GQIVYQGPRELVLE 414 (1206)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1206)
|+++.++++++++.
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999864
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=371.58 Aligned_cols=223 Identities=31% Similarity=0.429 Sum_probs=197.7
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc-ceEEEecCCCCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lT 242 (1206)
...+|+|+|+.|++||+++++|||||||||||++|||+..|+ +|+|.++|.+++..++. |.+++|+|+-.+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 467999999999999999999999999999999999999998 99999999999998875 78999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.|+.+.++... ..+.+.+++++|+.++|++.++.. +.
T Consensus 94 V~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~R~-----p~ 135 (352)
T COG3842 94 VEENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFADRK-----PH 135 (352)
T ss_pred HHHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhhhC-----hh
Confidence 9999999987433111 012345688899999999877654 55
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||+|||++||||+.+|++||||||.|+||..-+.++..-|+++.+.. +.+.|.++|+..|++.+.|+|++|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCc
Confidence 799999999999999999999999999999999999999999999987765 6666778999999999999999999999
Q ss_pred EEEecChHHHHHHHHhcCCCCCCCCChhHHHHhh
Q 000971 403 IVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436 (1206)
Q Consensus 403 iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v 436 (1206)
|...|+++++ |..|...-+|+|+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 4578777888887653
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=345.01 Aligned_cols=192 Identities=26% Similarity=0.376 Sum_probs=169.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+|+|||+.|.+||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|-+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 67999999999999999999999999999999999999998 999999999883 4567899999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
||+.|+...++... .+....++.+|+.+||.+..|. ++..|
T Consensus 91 ~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~~-----~P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFEDK-----YPHQL 131 (248)
T ss_pred hhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhhc-----Ccccc
Confidence 99999987654211 1122357889999999998875 45679
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
||||||||+|||||+.+|+||+||||+++||+.|+.++.+.|.++.+.. +.+|+.++|+.+|+..++|+|++|+++
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999999999999999988887754 456666899999999999999999984
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=355.41 Aligned_cols=211 Identities=34% Similarity=0.451 Sum_probs=181.2
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc---ceEEEecCCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGE 240 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~ 240 (1206)
.++||+|+|+.+++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.++..+ +.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 467999999999999999999999999999999999999997 99999999999887654 789999999888889
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+|-+.++..-+. .. ...+ ..+....++..|+.+|+.+.++..+.
T Consensus 91 ~tV~d~V~~GR~p~~--~~----------------~~~~------------~~~D~~~v~~aL~~~~~~~la~r~~~--- 137 (258)
T COG1120 91 LTVYELVLLGRYPHL--GL----------------FGRP------------SKEDEEIVEEALELLGLEHLADRPVD--- 137 (258)
T ss_pred cEEeehHhhcCCccc--cc----------------ccCC------------CHhHHHHHHHHHHHhCcHHHhcCccc---
Confidence 999999998743210 00 0000 01122357888999999999987765
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.|||||||||.||+||+++|+||+||||||+||.....++++.++++.+..+ .+||.++|+...+..+||++++|++
T Consensus 138 --~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~-~tvv~vlHDlN~A~ryad~~i~lk~ 214 (258)
T COG1120 138 --ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG-LTVVMVLHDLNLAARYADHLILLKD 214 (258)
T ss_pred --ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999987544 5555577888999999999999999
Q ss_pred CeEEEecChHHHH
Q 000971 401 GQIVYQGPRELVL 413 (1206)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1206)
|+++.+|++++++
T Consensus 215 G~i~a~G~p~evl 227 (258)
T COG1120 215 GKIVAQGTPEEVL 227 (258)
T ss_pred CeEEeecCcchhc
Confidence 9999999998775
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=338.40 Aligned_cols=211 Identities=25% Similarity=0.353 Sum_probs=181.1
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDN 236 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~ 236 (1206)
..+.||+|||+.|++||+++|+|||||||||||++|.|++.|+ +|+|.+.|.++..... ++.+|+++|+-.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 4567999999999999999999999999999999999999998 9999999999876554 367999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1206)
+|..|||+||+.|..+-+.. +.+ ...+..+..-|+..||... +
T Consensus 96 LFssltV~eNVafplre~~~---------lp~------------------------~~i~~lv~~KL~~VGL~~~----~ 138 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTK---------LPE------------------------SLIRELVLMKLELVGLRGA----A 138 (263)
T ss_pred cccccchhHhhheehHhhcc---------CCH------------------------HHHHHHHHHHHHhcCCChh----h
Confidence 99999999999997653221 110 1123345556888999754 3
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
++.++..||||++||+++|||++.+|+++|+||||+||||-++..+.+.|+++.+..+ .|++.++|+.++++..+|+|+
T Consensus 139 ~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg-~T~i~VTHDl~s~~~i~Drv~ 217 (263)
T COG1127 139 ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALG-LTVIMVTHDLDSLLTIADRVA 217 (263)
T ss_pred hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC-CEEEEEECChHHHHhhhceEE
Confidence 4567788999999999999999999999999999999999999999999999887655 555558899999999999999
Q ss_pred EEcCCeEEEecChHHHHH
Q 000971 397 LLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1206)
+|.+|+|++.|+++++.+
T Consensus 218 ~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 218 VLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEeCCEEEEeCCHHHHHh
Confidence 999999999999999864
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=368.94 Aligned_cols=217 Identities=23% Similarity=0.293 Sum_probs=187.4
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++.++.+ .....+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 6789999887421 0124699999999999999999999999999999999998764 4899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
.. ..++.+||++|+..+++..||+||+.|...++ ..+.++.++++.++++.+||.+..++.+ ..||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 13567999999999999999999999875433 2345566678999999999999888774 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999875 999999999986 57789999999985 7999
Q ss_pred EEcCC
Q 000971 1062 YVGPL 1066 (1206)
Q Consensus 1062 ~~g~~ 1066 (1206)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=344.56 Aligned_cols=206 Identities=28% Similarity=0.439 Sum_probs=175.4
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCC---CCCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQH---DNHIGEMT 242 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~---d~~~~~lT 242 (1206)
++|+|||+.|++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+......+..+|||||. |+-|| +|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-IT 93 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cC
Confidence 4999999999999999999999999999999999999997 99999999988777666789999995 44465 69
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+|.+..+...+. ..+ ....+ +.+..+++.|+.+|+.+.+|..+|
T Consensus 94 V~d~V~~g~~~~~--g~~---~~~~~-------------------------~d~~~v~~aL~~Vgm~~~~~r~i~----- 138 (254)
T COG1121 94 VKDVVLLGRYGKK--GWF---RRLNK-------------------------KDKEKVDEALERVGMEDLRDRQIG----- 138 (254)
T ss_pred HHHHHHccCcccc--ccc---ccccH-------------------------HHHHHHHHHHHHcCchhhhCCccc-----
Confidence 9999998632111 000 01111 123467889999999999998888
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||+|||-|||||+++|++|+|||||+|+|+.+...|++.|+++.+. +.+|+.++|+...+.++||+|+.|+. +
T Consensus 139 ~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln~-~ 215 (254)
T COG1121 139 ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLNR-H 215 (254)
T ss_pred ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEcC-e
Confidence 49999999999999999999999999999999999999999999998764 56666689999999999999999965 6
Q ss_pred EEEecChHHHH
Q 000971 403 IVYQGPRELVL 413 (1206)
Q Consensus 403 iv~~G~~~~~~ 413 (1206)
+++.|+++++.
T Consensus 216 ~~~~G~~~~~~ 226 (254)
T COG1121 216 LIASGPPEEVL 226 (254)
T ss_pred eEeccChhhcc
Confidence 88999998775
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=351.50 Aligned_cols=214 Identities=24% Similarity=0.350 Sum_probs=181.9
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ .+.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 35788888763 24699999999999999999999999999999999998764 4799999998753
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 909 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
. ..+++.+||++|++.+++.+||+||+.+...... ..+.++..+.+.++++.++|.+..++.+ ..||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 2 2245679999999999999999999988643221 1234445567899999999988777764 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
|||||||+||+||+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++...+|++++|++ |+++
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~ 216 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIV 216 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999998774 899999999987 57788999999985 7899
Q ss_pred EEcCC
Q 000971 1062 YVGPL 1066 (1206)
Q Consensus 1062 ~~g~~ 1066 (1206)
+.|+.
T Consensus 217 ~~g~~ 221 (235)
T cd03261 217 AEGTP 221 (235)
T ss_pred EecCH
Confidence 98874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=369.32 Aligned_cols=216 Identities=25% Similarity=0.350 Sum_probs=188.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++ +.+.+|+||||++++|+++||+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 378899988772 124699999999999999999999999999999999998764 589999999876
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
... ..++.+|||+|++.++|++||+||+.|....+ ..+.++..+.++++++.++|.+..++.+ ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 431 23467999999999999999999999986533 2345566678999999999999888874 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+.+|+||+||||||+||+.++..+.+.|+++.++ |.|||++||++. ++...+|++++|++ |+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECC
Confidence 9999999999999999999999999999999999999998765 999999999986 68899999999985 79999998
Q ss_pred CC
Q 000971 1066 LG 1067 (1206)
Q Consensus 1066 ~~ 1067 (1206)
..
T Consensus 219 ~~ 220 (356)
T PRK11650 219 PV 220 (356)
T ss_pred HH
Confidence 63
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=368.29 Aligned_cols=214 Identities=25% Similarity=0.361 Sum_probs=189.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||++++. .+.+|+||||++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 478999998774 24699999999999999999999999999999999998764 489999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
.. ...+|.+|||+|+..++|++||+||+.|+...+ ..+.++.+..++++++.++|.++.++.+ ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 43 223577999999999999999999999986543 2345666778999999999999888874 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|||++||+++ ++...+|++++|++ |++++.|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 999999999997 78899999999995 79999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 219 ~ 219 (353)
T TIGR03265 219 P 219 (353)
T ss_pred H
Confidence 6
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=364.70 Aligned_cols=214 Identities=28% Similarity=0.384 Sum_probs=187.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++ ++.+|+||||+|++|+++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEEC
Confidence 589999998874 34699999999999999999999999999999999998764 489999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 908 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
.. ...++.+||++|++.+++.+||.|++.|.+.++. .+..+..+.++++++.++|.+..++.+ ..||+||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 43 2345679999999999999999999987665442 233444556889999999998888875 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||++||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999987 68889999999986 79999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 256 ~ 256 (340)
T PRK13536 256 P 256 (340)
T ss_pred H
Confidence 5
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=365.31 Aligned_cols=214 Identities=24% Similarity=0.381 Sum_probs=189.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.+. ++.+|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 588999998874 24699999999999999999999999999999999998764 489999999876
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
... ..+|.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.++.++.+ ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 432 23577999999999999999999999986543 2345666778999999999999888774 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+.+|+||+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++.+++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999997 68899999999995 79999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 221 ~ 221 (351)
T PRK11432 221 P 221 (351)
T ss_pred H
Confidence 6
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=337.41 Aligned_cols=196 Identities=28% Similarity=0.420 Sum_probs=167.3
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDN 236 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (1206)
..++|++||+.|++||+++|+|||||||||||++|+|...|+ +|.|.++|.++..+.. ++.+|||+|+..
T Consensus 17 ~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 378999999999999999999999999999999999999997 9999999999886653 257999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccc-cc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCAD-TM 315 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-t~ 315 (1206)
++|++||+||+.+...+.+.... +....++.+++.+||.+..+ ..
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~ 139 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKK 139 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCC
Confidence 99999999999987766543210 12234677899999997665 43
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 316 vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
+..|||||||||+|||||+.+|++++.||||..||+.++..|++.|+++.+..+ ++|+.++|+ +++...||++
T Consensus 140 -----p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g-~tii~VTHd-~~lA~~~dr~ 212 (226)
T COG1136 140 -----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERG-KTIIMVTHD-PELAKYADRV 212 (226)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcC-CEEEEEcCC-HHHHHhCCEE
Confidence 447999999999999999999999999999999999999999999999887544 445546665 4678899999
Q ss_pred EEEcCCeE
Q 000971 396 ILLSDGQI 403 (1206)
Q Consensus 396 ilL~~G~i 403 (1206)
+.|.+|++
T Consensus 213 i~l~dG~~ 220 (226)
T COG1136 213 IELKDGKI 220 (226)
T ss_pred EEEeCCee
Confidence 99999984
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=366.38 Aligned_cols=214 Identities=24% Similarity=0.334 Sum_probs=188.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeE--EEEEEcCc
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT--GNITISGY 905 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~--G~i~i~g~ 905 (1206)
.+.++||++++. ...+|+|||++|++|++++|+|||||||||||++|+|...+ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 578999998874 24699999999999999999999999999999999998764 36 99999998
Q ss_pred cCCc-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 906 PKKQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 906 ~~~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
+... ...++.+|||+|+..++|.+||+||+.|....+ ..+.++.+++++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 223567999999999999999999999976443 2345566678999999999999988874 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||+|||||+.+|+||+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 899999999987 68899999999985 79999
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|+.
T Consensus 220 ~g~~ 223 (362)
T TIGR03258 220 HGEP 223 (362)
T ss_pred EcCH
Confidence 9985
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=342.90 Aligned_cols=210 Identities=28% Similarity=0.409 Sum_probs=177.7
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
.++|+++.++ ++.+|+||||++++|++++|+||||||||||+++|+|...+ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCc
Confidence 5778887763 24699999999999999999999999999999999998663 48999999987643
Q ss_pred c-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHH
Q 000971 910 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1206)
Q Consensus 910 ~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqr 988 (1206)
. ..++.++|++|++.+++.+|++||+.+..... ....+..++.++++++.++|.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 1 23457899999998888999999998764332 1223444566889999999988777764 5799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 989 l~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
++||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999876 4999999999986 57788999999986 6777654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=326.70 Aligned_cols=223 Identities=25% Similarity=0.394 Sum_probs=180.8
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCeeCCCCC-----ccceEEEecCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDN 236 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~ 236 (1206)
.+.+|+|||+.|+++++||++|||||||||||++|....+ +..+++|+|.|+|+++-+.. .++.+|+|+|.+.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 3569999999999999999999999999999999988755 45678999999999986542 2578999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc-ccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADTM 315 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1206)
.|| +|++||+.|+.+.++... +.+.+ +++..|+.-+|-+ ..|.+
T Consensus 99 PFp-~SIydNVayG~r~~g~~~--~~lde--------------------------------iVe~sLk~AaLWdEVKDrL 143 (253)
T COG1117 99 PFP-MSIYDNVAYGLRLHGIKD--KELDE--------------------------------IVESSLKKAALWDEVKDRL 143 (253)
T ss_pred CCC-chHHHHHHHhHHhhccch--HHHHH--------------------------------HHHHHHHHhHhHHHhHHHh
Confidence 999 999999999999887543 11111 2222233333311 22222
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 316 vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
++...+|||||+||++|||+|+-+|+|||||||||+|||-++..|-+.+.++. ..-+|+.++|.+..+.+..|+.
T Consensus 144 --~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk---~~yTIviVTHnmqQAaRvSD~t 218 (253)
T COG1117 144 --HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK---KKYTIVIVTHNMQQAARVSDYT 218 (253)
T ss_pred --hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH---hccEEEEEeCCHHHHHHHhHhh
Confidence 12234799999999999999999999999999999999999999999999875 3566666899999999999999
Q ss_pred EEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHH
Q 000971 396 ILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~ 434 (1206)
..+..|++|++|+.+++ |..|.++.+.||+.
T Consensus 219 aFf~~G~LvE~g~T~~i--------F~~P~~~~TedYis 249 (253)
T COG1117 219 AFFYLGELVEFGPTDKI--------FTNPKHKRTEDYIS 249 (253)
T ss_pred hhhcccEEEEEcCHHhh--------hcCccHHHHHHHhc
Confidence 99999999999999987 45677777777753
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=323.17 Aligned_cols=206 Identities=32% Similarity=0.373 Sum_probs=182.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1206)
..+++||||.++.|++++|+|||||||||+|++|++++.|+ +|.|++||.+....+ .++.+|.++.+..++..||
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT 91 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLT 91 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhh
Confidence 45899999999999999999999999999999999999998 999999999876543 3578999998888999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
++|||.|.+++.+.. + .+.+..++.+.+.|+|..|.|+.+|
T Consensus 92 ~rEnl~~Fa~L~~l~----------~------------------------~~~kari~~l~k~l~l~~~~~rRv~----- 132 (245)
T COG4555 92 ARENLKYFARLNGLS----------R------------------------KEIKARIAELSKRLQLLEYLDRRVG----- 132 (245)
T ss_pred HHHHHHHHHHHhhhh----------h------------------------hHHHHHHHHHHHHhChHHHHHHHHh-----
Confidence 999999988875431 1 1234567889999999999999998
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
++|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++. ..+.+|+..+|..+|+..+||+|++|++|+
T Consensus 133 ~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k--~egr~viFSSH~m~EvealCDrvivlh~Ge 210 (245)
T COG4555 133 EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEALCDRVIVLHKGE 210 (245)
T ss_pred hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh--cCCcEEEEecccHHHHHHhhheEEEEecCc
Confidence 599999999999999999999999999999999999999999999864 335566668899999999999999999999
Q ss_pred EEEecChHHHHH
Q 000971 403 IVYQGPRELVLE 414 (1206)
Q Consensus 403 iv~~G~~~~~~~ 414 (1206)
+|+.|+.+.+..
T Consensus 211 vv~~gs~~~l~~ 222 (245)
T COG4555 211 VVLEGSIEALDA 222 (245)
T ss_pred EEEcCCHHHHHH
Confidence 999999987754
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=343.26 Aligned_cols=207 Identities=24% Similarity=0.318 Sum_probs=176.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.++. +.+.+|+|+|+++++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 578899888741 123599999999999999999999999999999999998663 4799999998753
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
.. .+++.++|++|++.+++.+||.||+.+....+. ...++.++.++++++.++|.+..++.+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 235679999999988999999999988654331 233445567899999999998877764 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+++ .+...+|++++|++|
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999777999999999986 577789999999864
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=343.27 Aligned_cols=214 Identities=22% Similarity=0.335 Sum_probs=188.6
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|++|+|+. +..+|+|+|+.|++|+.++|+|+||||||||+++|+|...+ .+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeecc
Confidence 678999998851 24799999999999999999999999999999999998774 4799999998854
Q ss_pred ----cccccceEEEeecCCCC-CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 909 ----QETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 909 ----~~~~~~~~gyv~q~~~~-~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
...+++.+|||+|++.. +-.-||.|.+.|+..- ...+.++.+++++++++.+++.+++++. +..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 34567889999999865 3457999999998643 3456667889999999999999998887 468999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
||||||+||.+|+.+|++|+|||||||||+.+...+++.++++..+ |.|||++||+.. .+...+|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 699999999987 57888999999996 79999
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9985
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=329.04 Aligned_cols=217 Identities=26% Similarity=0.375 Sum_probs=181.3
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDN 236 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~ 236 (1206)
...++|+|||+.|++|||++|+|||||||||||++|.|..+++ +|+|.+||.++..... ++.+||++|+..
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 3467999999999999999999999999999999999999987 9999999988765543 368999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1206)
+.+.+||.+|+..+..-+. +.++.+- +..+. +.+..+-..|+.+|+.+.+.+..
T Consensus 92 Lv~r~sv~~NVl~grl~~~--s~~~slf---------glfsk---------------~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYT--STWRSLF---------GLFSK---------------EDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccc--hHHHHHh---------CCCCH---------------HHHHHHHHHHHHcCcHHHHHHHh
Confidence 9999999999998754221 1111111 11111 11234556799999999988877
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
+ .|||||+|||+|||+|+.+|+|++-|||++.||+.++.++++.|++++...+.|+|+. +|..+-+.++||||+
T Consensus 146 ~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~n-LH~vdlA~~Y~~Rii 219 (258)
T COG3638 146 S-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVN-LHQVDLAKKYADRII 219 (258)
T ss_pred c-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEE-echHHHHHHHHhhhe
Confidence 6 5999999999999999999999999999999999999999999999988766666665 556788899999999
Q ss_pred EEcCCeEEEecChHHHHH
Q 000971 397 LLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1206)
-|.+|+|+|.||++++.+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999988654
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=341.94 Aligned_cols=215 Identities=25% Similarity=0.353 Sum_probs=180.9
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
.++|+++.++.. ...+.+|+|+||+|++|++++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcc
Confidence 577888776410 0114699999999999999999999999999999999998653 48999999987642
Q ss_pred ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHH
Q 000971 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL 989 (1206)
Q Consensus 910 ~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl 989 (1206)
.++.++|++|++.+++.+|++||+.+....+. ...+...+.++++++.++|.+..++.+ ..||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 35678999999988888999999988654331 233444567899999999988777764 57999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEec-CcEEEEEcCC
Q 000971 990 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPL 1066 (1206)
Q Consensus 990 ~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~-gg~~~~~g~~ 1066 (1206)
+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++...+|++++|++ .|+++..+++
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999999999999865 4899999999987 57788999999985 4899888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=362.82 Aligned_cols=216 Identities=24% Similarity=0.374 Sum_probs=187.1
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.+. .+.+|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67889988763 24699999999999999999999999999999999998764 4799999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
.. ..++.+|||+|++.++|.+||+||+.|....+.. ...+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 32 2346799999999999999999999987543211 12344556678999999999998888774 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|+|++||++. ++...+|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999866 899999999997 68899999999985 79999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 221 ~ 221 (353)
T PRK10851 221 P 221 (353)
T ss_pred H
Confidence 5
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=359.75 Aligned_cols=202 Identities=27% Similarity=0.375 Sum_probs=177.4
Q ss_pred ceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc--ccccceEEEeecCCCCCCCCC
Q 000971 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVT 930 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~~T 930 (1206)
++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 35799999999999999999999999999999999998764 48999999987643 234567999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000971 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010 (1206)
Q Consensus 931 v~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsg 1010 (1206)
|+||+.|.+.++. ....+.++.++++++.++|.+..++.+ ..|||||||||+||+||+++|++|||||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765542 233445567899999999998888774 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1011 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1011 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+.++..+++.|++++++|+|||+++|+++ ++...||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999878999999999987 67889999999985 799999975
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=363.33 Aligned_cols=214 Identities=22% Similarity=0.329 Sum_probs=188.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999998874 24699999999999999999999999999999999998764 489999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
.. ...+|.+|||+|++.++|.+||+||+.|+...+ ..+..+.++.++++++.++|.+..++.+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 223567999999999999999999999975433 2344555667999999999999888874 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+.+|++|+|||||||||..++..+.+.|+++.++ |.|||++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 999999999987 68899999999985 79999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 5
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=314.46 Aligned_cols=196 Identities=26% Similarity=0.359 Sum_probs=172.0
Q ss_pred cceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHH
Q 000971 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTVYESLLY 937 (1206)
Q Consensus 859 ~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~ 937 (1206)
..++.|.+||++||+||||||||||||+|+|...+ .+|.|+|||.+... ....|=+..++|+..+|.++||++|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 45788999999999999999999999999998875 48999999988644 2345668899999999999999999987
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000971 938 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017 (1206)
Q Consensus 938 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~ 1017 (1206)
+..-.+ .. ..+.++.++.++..+||..+.+++.+ .||||||||+++||+|+++-+||+||||.|.||+.-+.
T Consensus 95 Gl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 643111 11 24456679999999999999999854 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1018 IVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1018 ~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
++..++.++.++ +.|++++||+|+ +.....|+++++++ |++.|.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 999999999765 899999999998 89999999999996 799999985
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=356.87 Aligned_cols=214 Identities=28% Similarity=0.379 Sum_probs=184.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++ ++.+|+||||+|++|+++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478899998774 24699999999999999999999999999999999998664 479999999875
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 908 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
.. ...++.+||++|++.+++.+||+||+.+.+..+ ..+.++..+.++++++.++|.+..++.+ ..|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 224567999999999999999999998755432 1233444556888999999998877774 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999987 67789999999985 78999997
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=339.00 Aligned_cols=210 Identities=25% Similarity=0.419 Sum_probs=178.9
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.+. ++.+|+||||++++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchh
Confidence 35788887763 24699999999999999999999999999999999998653 4899999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHH
Q 000971 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1206)
Q Consensus 909 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqr 988 (1206)
. ..++.++|++|++.+++.+|++||+.+....+. ....+.++.+.++++.+++.+..++.+ ..||||||||
T Consensus 66 ~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (210)
T cd03269 66 I-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQK 136 (210)
T ss_pred H-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHH
Confidence 3 345679999999988889999999988654432 223444567899999999988777653 5799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 989 l~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999998877999999999986 57788999999985 6777654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=357.08 Aligned_cols=206 Identities=23% Similarity=0.331 Sum_probs=177.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1206)
.++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 56999999999999999999999999999999999999997 9999999999876542 45799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+.+||+||+.|+....+... .+....+.++++.+||.+..|..+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~~-- 138 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSYP-- 138 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998755332100 011234667899999998777554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+..+ .+|+.++|..+.+.++||+|++|
T Consensus 139 ---~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g-~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 139 ---SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLG-LTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999999876434 45556888899999999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=329.43 Aligned_cols=217 Identities=26% Similarity=0.345 Sum_probs=180.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++.+|++..++... ....+|+||||+|.+||++||+|+||||||||.++|+|...+ .+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 367889887775321 112599999999999999999999999999999999998774 489999999875
Q ss_pred Ccc----cccceEEEeecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCC
Q 000971 908 KQE----TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSG 980 (1206)
Q Consensus 908 ~~~----~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~ 980 (1206)
... .+.+.+.+|+|++. +.|..||++.|.=.... ...++.++ ++.++++.+||.+ ..++. +..
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~~--~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQQ--RIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHHH--HHHHHHHHcCCCHHHHhcC-----chh
Confidence 442 36778999999975 57899999988644322 23333333 3999999999976 44554 457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
||||||||++|||||+.+|++|+||||||+||+..++.|++.|.++.++ |.|.|+++||.+ -+..+|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999765 889999999987 47789999999996 79
Q ss_pred EEEEcCCC
Q 000971 1060 EIYVGPLG 1067 (1206)
Q Consensus 1060 ~~~~g~~~ 1067 (1206)
++..++.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999864
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=339.98 Aligned_cols=213 Identities=28% Similarity=0.376 Sum_probs=181.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ .+.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecC
Confidence 35788887763 24699999999999999999999999999999999998653 4899999997653
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
. ...++.++|++|++.+++.+||+|++.+....+. ...++.++.++++++.++|.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 2234578999999988999999999988654431 233344567899999999988777764 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++...+|++++|++ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999876 899999999987 57788999999985 78888876
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 4
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=338.84 Aligned_cols=211 Identities=26% Similarity=0.402 Sum_probs=178.9
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ ++.+|+||||+|++|++++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 35788888764 23699999999999999999999999999999999998653 4799999998754
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ..++.++|++|++.+++..|++||+.+....+ ....++.++.++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 31 12357999999998888899999998764432 1233445567889999999988777764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
|++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++...+|++++|.+ |+++++|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999864 899999999986 57788999999985 7888765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=360.15 Aligned_cols=217 Identities=22% Similarity=0.295 Sum_probs=185.1
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||+++++.. ...+.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5789999887411 0135699999999999999999999999999999999998764 4799999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
.. .+++.+||++|++.+++.+||+||+.|....+ ..+.++.++.++++++.++|.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999999999999999875443 2234445567899999999998877764 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999987 57788999999985 7999
Q ss_pred EEcCC
Q 000971 1062 YVGPL 1066 (1206)
Q Consensus 1062 ~~g~~ 1066 (1206)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99875
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=343.42 Aligned_cols=215 Identities=27% Similarity=0.352 Sum_probs=180.3
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
.++|+++.++ ++.+|+|+|+++++|+++||+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECCC
Confidence 5678887763 24699999999999999999999999999999999998653 47999999987643
Q ss_pred c---c-ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCC-------CCHHHHHHHHHHHHHHcCCccccccccCCCCC
Q 000971 910 E---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE-------VDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1206)
Q Consensus 910 ~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~ 978 (1206)
. . .++.++|++|++.+++.+||+||+.+......... ...++..+.+.++++.++|.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 2 1 23458999999999999999999988654321110 123344567899999999988777663
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999878999999999987 57788999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 88888874
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=360.37 Aligned_cols=214 Identities=23% Similarity=0.355 Sum_probs=187.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|++..+. +..+|+|+|+++++|++++|+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 589999998763 24699999999999999999999999999999999998764 489999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
.. ...+|.+|||+|++.++|++||.||+.|....+ ..+..+.++++.++++.++|.+..++.+ ..||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234678999999999999999999999975433 2345566678999999999998888774 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+.+|++|+|||||++||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 9999999999999999999999999999999999999988654 899999999987 78899999999985 79999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 234 ~ 234 (377)
T PRK11607 234 P 234 (377)
T ss_pred H
Confidence 5
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=360.23 Aligned_cols=202 Identities=25% Similarity=0.297 Sum_probs=178.7
Q ss_pred ceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc---cc----cceEEEeecCCCC
Q 000971 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TF----ARISGYCEQNDIH 925 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~q~~~~ 925 (1206)
.+.+|+|+||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++... .+ ++.+|||+|++.+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 45699999999999999999999999999999999998764 589999999876532 12 5689999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000971 926 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005 (1206)
Q Consensus 926 ~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LD 1005 (1206)
+|.+||+||+.|...+. ..+.++..+++.++++.++|.+..++.+ ..|||||||||+|||||+.+|+|||||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999876543 2345666778999999999998888774 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1006 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1006 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|||++||+.++..+++.|+++.++ |+|||++||++. ++...+|++++|++ |+++..|+.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~ 214 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP 214 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 999999999999999999998754 899999999987 57889999999985 799999975
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=360.88 Aligned_cols=206 Identities=25% Similarity=0.364 Sum_probs=179.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+.+|+|+|+.|++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++||+|+..+||++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 46999999999999999999999999999999999999987 9999999999876554 3689999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+.++... .+....++++++.+||++..+..+ +.
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 134 (356)
T PRK11650 94 RENMAYGLKIRGMPK----------------------------------AEIEERVAEAARILELEPLLDRKP-----RE 134 (356)
T ss_pred HHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hh
Confidence 999999865332100 012234678899999998777655 47
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL-KTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999876533 45666688888999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999998874
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=339.75 Aligned_cols=215 Identities=27% Similarity=0.425 Sum_probs=180.8
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++.. .....+|+|+|+++++|++++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 5688898877411 0112699999999999999999999999999999999998663 4799999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
. ..+++.+||++|++.+++.+||+||+.+....+ ....++..+.++++++.++|.+..++.+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234567999999998889999999998765433 2234455667899999999988777764 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
||++||+||+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++...+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999986 57788999999986 6777654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=362.01 Aligned_cols=214 Identities=25% Similarity=0.369 Sum_probs=185.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++++. .+.+|+|+|++|++|++++|+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 378899988773 24699999999999999999999999999999999998764 479999999876
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
... ..++.+|||+|+..+++.+||+||+.|....+ ..+.++.++.++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 431 23467999999999999999999999876443 1234455667999999999998888774 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||++||+++ ++...+|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999987 68889999999985 79999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 218 ~ 218 (369)
T PRK11000 218 P 218 (369)
T ss_pred H
Confidence 5
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=341.61 Aligned_cols=213 Identities=26% Similarity=0.353 Sum_probs=180.7
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ .+.+|+|+||++++|+++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 35778887763 24699999999999999999999999999999999998663 4799999998753
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 909 QE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 909 ~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
.. . .++.++|++|++.+++.+||+||+.+....+. ....+....++++++.+++.+..++.+ ..||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHH
Confidence 21 1 23468999999999999999999987643321 223344556889999999988777663 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 215 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEG 215 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEe
Confidence 999999999999999999999999999999999999999999877999999999987 68889999999985 7888888
Q ss_pred CC
Q 000971 1065 PL 1066 (1206)
Q Consensus 1065 ~~ 1066 (1206)
+.
T Consensus 216 ~~ 217 (232)
T cd03218 216 TP 217 (232)
T ss_pred CH
Confidence 75
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=341.74 Aligned_cols=217 Identities=26% Similarity=0.382 Sum_probs=181.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++ .+.+|+|||++|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 367899988874 24699999999999999999999999999999999998653 479999999875
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 908 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
... ..++.++|++|++.+++.+||+||+.+....+.. ......+..+.++++++.++|.+..++.+ ..||+||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 1245689999999888889999999886543211 00122334556889999999988777763 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999999775 899999999986 57788999999985 7899888
Q ss_pred CC
Q 000971 1065 PL 1066 (1206)
Q Consensus 1065 ~~ 1066 (1206)
+.
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 74
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=363.22 Aligned_cols=218 Identities=26% Similarity=0.354 Sum_probs=186.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++ ++.+|+||||.|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEc
Confidence 378899988774 35799999999999999999999999999999999998763 489999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ...++.+|||+|++.+++.+||+|++.++...+.. .....+..++.++++++.++|.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 33567799999999998899999999886432110 01112334567899999999998888774 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
|||||+.|||||+++|+||||||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999987 57889999999985 789999
Q ss_pred cCCC
Q 000971 1064 GPLG 1067 (1206)
Q Consensus 1064 g~~~ 1067 (1206)
|+..
T Consensus 221 G~~~ 224 (402)
T PRK09536 221 GPPA 224 (402)
T ss_pred cCHH
Confidence 9863
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=353.47 Aligned_cols=212 Identities=23% Similarity=0.360 Sum_probs=185.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|++++++ ++.+|+|+||++++||++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 67889988773 24699999999999999999999999999999999998764 4899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
. ...++.+||++|++.+++.+||.||+.|.+.++. .+.++..+.++++++.+||.+..++.+ +.||+|||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2345679999999999999999999998776542 233444567899999999999888774 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||++||+||+++|++|||||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999864 799999999987 68889999999985 799999985
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=320.31 Aligned_cols=205 Identities=26% Similarity=0.349 Sum_probs=182.5
Q ss_pred CceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCccc----ccceEEEeecCCCCCC
Q 000971 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIHSP 927 (1206)
Q Consensus 852 ~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~q~~~~~~ 927 (1206)
+++++++|||+.|++||++||+|||||||||.+.++.|...+ .+|.|.+||.++.... .+.-+||+||++..|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 457899999999999999999999999999999999998774 4899999999876533 2335899999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000971 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1007 (1206)
Q Consensus 928 ~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEP 1007 (1206)
.+||+||++....++.. +....+++.+++++|+.+++.++++++. ..||||||+|+.|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999876655532 2334566777899999999999999873 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1008 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1008 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
.+|+||.+-..|+++++.|++.|..|++|-|.-. |....|||..++.+ |+++..|..
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p 223 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSP 223 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCH
Confidence 9999999999999999999999999999999987 79999999999996 799999986
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=358.28 Aligned_cols=206 Identities=22% Similarity=0.361 Sum_probs=179.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc-ceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV 243 (1206)
..+|+|+|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+. +.++||+|+..+||++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999998 99999999998766554 789999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+.++... .+....++++++.+||.+..+.. ++.
T Consensus 96 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~-----~~~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRY-----VDQ 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhh
Confidence 999999875432110 01233567889999998877654 457
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF-NITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999886533 45566688899999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=338.66 Aligned_cols=208 Identities=28% Similarity=0.390 Sum_probs=173.5
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++.++.. ...+.+|+|+||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehh
Confidence 3578888877410 0014699999999999999999999999999999999998663 4799999998754
Q ss_pred ccc-------ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 000971 909 QET-------FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1206)
Q Consensus 909 ~~~-------~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~L 981 (1206)
... .++.++|++|++.+++.+||+||+.+....+. ......++.++++++.++|.+..++.+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 211 24579999999999999999999998754432 223344567899999999988777763 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
|||||||++||+||+.+|+||+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++. .+|++++|++|
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G 216 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDG 216 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCC
Confidence 99999999999999999999999999999999999999999999977 5899999999986 354 89999999864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=338.32 Aligned_cols=221 Identities=37% Similarity=0.611 Sum_probs=181.9
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC-CCeeEEEEEEcCccC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT-GGYITGNITISGYPK 907 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~~~ 907 (1206)
+.|+||+|.++.. ...+.+|+|+||++++||+++|+||||||||||+++|+|... +.+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5688898887421 013579999999999999999999999999999999999764 113479999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHH-HHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE-VMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
....+++.++|++|++.+++.+||+||+.|.+....+...........+++ .++.+++.+..++. +..||+|||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544456779999999999999999999998765433222222223334555 89999998777665 357999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777999999999985468899999999986 7888765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=335.63 Aligned_cols=207 Identities=29% Similarity=0.397 Sum_probs=176.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.++ .+.+|+|+||++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCccc
Confidence 35788887763 24699999999999999999999999999999999998653 4899999998754
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 Q-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
. ...++.++|++|++.+++.+||+||+.+....+. . .++.++++++.++|.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 3 2235578999999988889999999987654321 1 1345788999999988777764 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998877999999999987 57778999999985 6887765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=358.63 Aligned_cols=206 Identities=26% Similarity=0.398 Sum_probs=179.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+.+|+|+|+.+++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ +|.++||+|+..+||++||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999999987 9999999999876554 4689999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+.++... .+....++.+++.+||++..|..+ ..
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~L~~~~~~~~-----~~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMGR----------------------------------AEVAERVAELLDLVGLPGSERKYP-----GQ 134 (353)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhCCh-----hh
Confidence 999999865332100 012235678999999998877554 47
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL-GVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999876533 45566688888999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
++.|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (353)
T TIGR03265 214 EQVGTPQEIY 223 (353)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=370.95 Aligned_cols=217 Identities=28% Similarity=0.438 Sum_probs=182.1
Q ss_pred CCCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEE
Q 000971 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNIT 901 (1206)
Q Consensus 822 ~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~ 901 (1206)
.|.....++|+||+|.|+.. ...+|+|+|++|+|||.+||+|+||||||||+|+|+|...+ .+|+|+
T Consensus 465 ~~~~~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~ 531 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRIL 531 (709)
T ss_pred ccccCceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEE
Confidence 34445689999999999631 23699999999999999999999999999999999998874 489999
Q ss_pred EcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cc
Q 000971 902 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QS 971 (1206)
Q Consensus 902 i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~ 971 (1206)
+||+++.+ ..+|+.+|||+|++.++. -|++||+.++. | +.+ ++.+.+++...|..+.. ++
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~----p-~~~----~e~i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN----P-EAT----DEEIIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC----C-CCC----HHHHHHHHHHhCcHHHHHhccccccc
Confidence 99998654 567899999999998875 69999998753 1 222 23366666666665543 45
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeE
Q 000971 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 972 ~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
.+|+. ..+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|.+.. .|+|+|+++|.++ .++.+|++
T Consensus 602 ~v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrI 677 (709)
T COG2274 602 PVGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRI 677 (709)
T ss_pred ccccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEE
Confidence 55654 46899999999999999999999999999999999999999999999875 5899999999986 58889999
Q ss_pred EEEecCcEEEEEcCC
Q 000971 1052 FLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1052 ~ll~~gg~~~~~g~~ 1066 (1206)
++|++ |+++..|+.
T Consensus 678 iVl~~-Gkiv~~gs~ 691 (709)
T COG2274 678 IVLDQ-GKIVEQGSH 691 (709)
T ss_pred EEccC-CceeccCCH
Confidence 99985 799999985
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=339.86 Aligned_cols=214 Identities=23% Similarity=0.294 Sum_probs=178.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCC-----CCCeeEEEEEEc
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK-----TGGYITGNITIS 903 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~-----~~~~~~G~i~i~ 903 (1206)
++++||++.++ .+.+|+|+||+|++||++||+||||||||||+++|+|.. . +.+|+|.++
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEEC
Confidence 35778887763 236999999999999999999999999999999999976 4 358999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCC
Q 000971 904 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1206)
Q Consensus 904 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~ 978 (1206)
|.++.. ..+++.+||++|++.++ .+||+||+.+....+. ....++.++.++++++.++|.+..+..+. +
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987532 22456799999998887 7999999988654331 11222345678899999999877666421 2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|+++ ++.+.+|++++|.+ |
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G 216 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-G 216 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999877 99999999987 57788999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 217 ~i~~~g~~ 224 (227)
T cd03260 217 RLVEFGPT 224 (227)
T ss_pred EEEEecCc
Confidence 89988875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=340.59 Aligned_cols=217 Identities=24% Similarity=0.312 Sum_probs=182.1
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++.. .+...+|+++||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5678888876410 0012699999999999999999999999999999999998764 4799999998754
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
.. ..++.++|++|++.+++.+|++||+.+....+. .........++++++.++|.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 124678999999999999999999988654331 233444567899999999988777763 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 57788999999985 7899
Q ss_pred EEcCC
Q 000971 1062 YVGPL 1066 (1206)
Q Consensus 1062 ~~g~~ 1066 (1206)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 88874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=358.14 Aligned_cols=207 Identities=23% Similarity=0.346 Sum_probs=180.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCce--eEEEECCeeCCCCCc-cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVS--GRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~--G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~l 241 (1206)
..+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ + |+|.++|.++....+ ++.++||+|+..+||.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 45999999999999999999999999999999999999987 7 999999999876554 46799999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.|+.+..+... .+....++++++.+||++..|..+.
T Consensus 95 tv~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~~---- 136 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLPA---- 136 (362)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCChh----
Confidence 99999999865432110 0122346788999999988876654
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|
T Consensus 137 -~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 137 -QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 7999999999999999999999999999999999999999999998865432566677889999999999999999999
Q ss_pred eEEEecChHHHH
Q 000971 402 QIVYQGPRELVL 413 (1206)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1206)
+++..|+++++.
T Consensus 216 ~i~~~g~~~~~~ 227 (362)
T TIGR03258 216 RLAAHGEPQALY 227 (362)
T ss_pred EEEEEcCHHHHH
Confidence 999999999874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=356.11 Aligned_cols=207 Identities=21% Similarity=0.296 Sum_probs=179.3
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDN 236 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (1206)
.+.+|+|+|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 456999999999999999999999999999999999999997 9999999999876554 457999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1206)
++|++||+||+.|+.+..+... .+....+.++++.+||++..++.+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCCh
Confidence 9999999999999865433210 011234677899999987777655
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
+ .|||||||||+|||||+.+|+|+||||||+|||+.++..+.+.|+++.+.. +.+|+.++|+..++..++|+|+
T Consensus 128 ~-----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~-~~Tii~vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 128 D-----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL-QKTIVFITHDLDEAIRIGDRIV 201 (363)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 4 699999999999999999999999999999999999999999999876533 4556668899999999999999
Q ss_pred EEcCCeEEEecChHHHH
Q 000971 397 LLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1206)
+|++|++++.|+++++.
T Consensus 202 vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EEeCCEEEeeCCHHHHH
Confidence 99999999999998875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=342.66 Aligned_cols=216 Identities=26% Similarity=0.313 Sum_probs=178.4
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
.++||+++++. ++.+|+|+|+++++|+++||+||||||||||+++|+|...+ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccc
Confidence 57788877631 14699999999999999999999999999999999998653 47999999987542
Q ss_pred ------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcC-----CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCC
Q 000971 910 ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL-----PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1206)
Q Consensus 910 ------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~ 978 (1206)
...++.++|++|++.+++.+||+||+.+...... ......+...+.+.++++.++|.+..++. +
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----A 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----c
Confidence 1235679999999988899999999987532100 00111223445688999999998777665 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
..||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+++ ++...+|++++|++
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~- 220 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD- 220 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999997 57779999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 221 G~i~~~~~~ 229 (241)
T cd03256 221 GRIVFDGPP 229 (241)
T ss_pred CEEEeecCH
Confidence 789988875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=335.62 Aligned_cols=206 Identities=25% Similarity=0.333 Sum_probs=175.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ +++.+|+|+||+|++|++++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 56888888763 123699999999999999999999999999999999998653 4899999998754
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
.. .+++.++|++|++.+++.+|+.||+.+....+. ...+..++.++++++.++|.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 235679999999988889999999988654321 223444567899999999987766663 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++...+|++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999987 577789999999864
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=348.62 Aligned_cols=218 Identities=20% Similarity=0.293 Sum_probs=181.6
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++.++... ...+.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECC
Confidence 78899998874210 0123699999999999999999999999999999999998764 4899999998764
Q ss_pred c-----ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc--cccccccCCCCCCC
Q 000971 909 Q-----ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK--PLIQSLVGLPGVSG 980 (1206)
Q Consensus 909 ~-----~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~g~~~~~~ 980 (1206)
. ..+++.+|||+|++. .+...||+||+.|..... ..+.++..+.++++++.+||. +..++. +..
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 134567999999863 233579999999865432 244556667799999999997 556665 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 57788999999986 79
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 9999875
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=339.46 Aligned_cols=214 Identities=22% Similarity=0.337 Sum_probs=181.9
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ ++.+|+|+||++++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 56888888763 24699999999999999999999999999999999998653 4799999998754
Q ss_pred c-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 909 Q-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 909 ~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
. ..+++.++|++|++.+++.+||+||+.|...... .....+.++.+.++++.++|.+..+..+ ..||+
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 2235679999999988889999999987542111 1234445567899999999988777763 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999987 57788999999985 789999
Q ss_pred cCC
Q 000971 1064 GPL 1066 (1206)
Q Consensus 1064 g~~ 1066 (1206)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 875
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=358.22 Aligned_cols=206 Identities=27% Similarity=0.367 Sum_probs=179.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+++|+|+|+.+++|++++|+|||||||||||++|+|+++++ +|+|.++|.++....+ ++.++||+|+..+||.+||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999987 9999999999876554 4679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+.++... .+....++++++.+||++..+..+ ..
T Consensus 104 ~eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~p-----~~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRKP-----HQ 144 (375)
T ss_pred HHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 999999865332110 011234677899999998877655 47
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|+||||++|||..++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987643 45566688999999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
+..|+++++.
T Consensus 224 ~~~g~~~~i~ 233 (375)
T PRK09452 224 EQDGTPREIY 233 (375)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=334.24 Aligned_cols=192 Identities=29% Similarity=0.373 Sum_probs=163.6
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCC-CCCCCCHH
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-HSPFVTVY 932 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~-~~~~~Tv~ 932 (1206)
+.+|+||||++++|++++|+|||||||||||++|+|...+ .+|+|.++|.+......++.+||++|++. .+...|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 3599999999999999999999999999999999998663 48999999987644344567999999974 33467999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000971 933 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012 (1206)
Q Consensus 933 e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD 1012 (1206)
||+.+...... . ....++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD-----A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC-----c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987543221 1 1245789999999998887764 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 1013 ARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 1013 ~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999777999999999987 57778999999986 5653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=336.02 Aligned_cols=214 Identities=26% Similarity=0.395 Sum_probs=180.1
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.++. +.+.+|+|||+++++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 357888877641 114699999999999999999999999999999999998663 4899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
. ..+++.+||++|++.+++.+|++||+.+....+. ...++..+.++++++.++|.+..++.+ ..||+|||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345679999999988889999999988654332 223344556889999999988777763 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999875 699999999987 57778999999985 788888874
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=340.60 Aligned_cols=214 Identities=27% Similarity=0.362 Sum_probs=181.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.+. ++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 67899988773 23699999999999999999999999999999999998653 4799999997653
Q ss_pred c-----------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCC
Q 000971 909 Q-----------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 977 (1206)
Q Consensus 909 ~-----------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~ 977 (1206)
. ...++.++|++|++.+++..|+.||+.+...... ....+...+.++++++.++|.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1235578999999988888999999987543211 123344556788999999998777665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999999877999999999987 57788999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 789988874
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=334.42 Aligned_cols=205 Identities=25% Similarity=0.356 Sum_probs=174.0
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
.++|+++.++ +.+.+|+|+|+++++|+++||+||||||||||+++|+|...+ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEccc
Confidence 5678887763 123699999999999999999999999999999999998653 47999999986532
Q ss_pred c------cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 910 E------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 910 ~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
. .+++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.++|.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1 245679999999999999999999988654332 233444567889999999988777663 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+.+|++++|++|
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G 212 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERG 212 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999998777999999999986 567789999999864
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=339.99 Aligned_cols=213 Identities=27% Similarity=0.377 Sum_probs=180.2
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
.++|+++.++. .+.+|+|+|++|++|+++||+|||||||||||++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCc
Confidence 57788877641 13599999999999999999999999999999999998663 47999999986532
Q ss_pred ---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc--ccccccCCCCCCCCCHH
Q 000971 910 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP--LIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 910 ---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~~g~~~~~~LSgG 984 (1206)
..+++.++|++|++.+++.+||+||+.+...++ ..+.+...+.+.++++.++|.+ ..++. +..||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHH
Confidence 233557899999999999999999998865433 1233445567899999999985 55655 3579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999765 899999999987 57788999999985 788988
Q ss_pred cCC
Q 000971 1064 GPL 1066 (1206)
Q Consensus 1064 g~~ 1066 (1206)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 874
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=339.96 Aligned_cols=212 Identities=26% Similarity=0.344 Sum_probs=179.9
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 56888887763 24699999999999999999999999999999999998653 4799999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHH
Q 000971 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1206)
Q Consensus 909 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqr 988 (1206)
. ..+.+||++|++.+++..||.||+.+....+ .....+..+.+.++++.++|.+..++. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 2345799999998888899999998764432 123344456789999999998877765 35799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEec-CcEEEEEcCC
Q 000971 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPL 1066 (1206)
Q Consensus 989 l~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~-gg~~~~~g~~ 1066 (1206)
++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++...+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999987 57889999999985 5888887764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=370.11 Aligned_cols=214 Identities=27% Similarity=0.443 Sum_probs=182.7
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
...++|+||+|.|+..+ ..++|+|+||+|+|||.||||||||+||||+.++|....+| .+|+|.+||.
T Consensus 463 ~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P--tsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP--TSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCe
Confidence 35799999999998653 46799999999999999999999999999999999988774 5899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc-------CCccccccccCC
Q 000971 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-------ELKPLIQSLVGL 975 (1206)
Q Consensus 906 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~~g~ 975 (1206)
|+++ ..+++.+|+|.|+|.++. -||+||+.|+.. ..+.++ |.++.++. ++.+-.|+.+|.
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~----i~~AAk~ANah~FI~~~p~gY~T~VGE 600 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEE----IEAAAKMANAHEFITNFPDGYNTVVGE 600 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHH----HHHHHHHhChHHHHHhCccccccccCC
Confidence 9765 457889999999999986 699999999753 233332 34444332 455667888988
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
.|. .||||||||++|||||++||.||||||.||+||+++...|+++|.++.+ ++|||++.|..| ..+.+|+|++++
T Consensus 601 kG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 601 KGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVID 676 (716)
T ss_pred ccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEc
Confidence 764 7999999999999999999999999999999999999999999998765 699999999976 578899999999
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|..
T Consensus 677 ~-G~V~E~G~h 686 (716)
T KOG0058|consen 677 K-GRVVEMGTH 686 (716)
T ss_pred C-CeEEecccH
Confidence 6 799999963
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=335.20 Aligned_cols=217 Identities=24% Similarity=0.314 Sum_probs=180.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++.. ...+.+|+++||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEc
Confidence 37899999887411 0114699999999999999999999999999999999998653 489999999876
Q ss_pred Cccc------c-cceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 000971 908 KQET------F-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1206)
Q Consensus 908 ~~~~------~-~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 980 (1206)
.... + ++.+||++|++.+++.+|++||+.+...++ ....++.+++++++++.++|.+..++.+ ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4311 1 256899999998888999999998865432 1233444567899999999988777653 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
||||||||++||++|+.+|+||||||||+|||+.+...+.+.|+++++ .|+|||+++|+++ ++ ..+|++++|.+ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 5899999999986 34 44689999985 78
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
++..|++
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9988875
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=344.67 Aligned_cols=203 Identities=25% Similarity=0.305 Sum_probs=173.8
Q ss_pred CceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc---c----ccceEEEeecCCC
Q 000971 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 924 (1206)
Q Consensus 852 ~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~q~~~ 924 (1206)
+.+.+|+|+||++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+.... . .++.+||++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 346799999999999999999999999999999999998764 479999999875421 1 1356999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000971 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1004 (1206)
Q Consensus 925 ~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~L 1004 (1206)
+++.+||+||+.+..... ........+.++++++.++|.+..++.+ ..||||||||++||+||+.+|+||||
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 898999999998865432 1223444567889999999998888774 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1005 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1005 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999998754 899999999987 57788999999985 789988874
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=344.06 Aligned_cols=215 Identities=24% Similarity=0.322 Sum_probs=181.7
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++. ...+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 3789999988741 23599999999999999999999999999999999998663 479999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ...++.+||++|++. .++..||.||+.|..... ....++.++.++++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 223457999999863 345689999998864321 2334445567899999999988887764 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ .+.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 56788999999985 789999
Q ss_pred cCC
Q 000971 1064 GPL 1066 (1206)
Q Consensus 1064 g~~ 1066 (1206)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 885
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=335.85 Aligned_cols=211 Identities=28% Similarity=0.409 Sum_probs=176.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++.++ .+.+|+||||++++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 35778887663 24699999999999999999999999999999999998763 4799999998754
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc-CCccccccccCCCCCCCCCH
Q 000971 909 QE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 909 ~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~~g~~~~~~LSg 983 (1206)
.. . .++.++|++|++.+++.+|++||+.+...... ..+....+.++++.+ ++.+..++. +..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCH
Confidence 31 1 24568999999999999999999988654321 122344567888888 576666655 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++...+|++++|++ |+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 57888999999985 788888
Q ss_pred cCC
Q 000971 1064 GPL 1066 (1206)
Q Consensus 1064 g~~ 1066 (1206)
|+.
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 874
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=321.97 Aligned_cols=212 Identities=25% Similarity=0.388 Sum_probs=192.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+++++|+.++ +.+.+++||||.++||+++|++|||||||||++++|.|...+ .+|.|.++|.+.+
T Consensus 3 L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLS 67 (300)
T ss_pred eEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchh
Confidence 5666666443 467899999999999999999999999999999999998774 4899999999987
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHH
Q 000971 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1206)
Q Consensus 909 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqr 988 (1206)
+.. +.++||+|.+..++|.+||.|.|.|-|.|+ .++.++....++.+|+.+++.......+ +.||-|++|+
T Consensus 68 ~~~-~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQK 138 (300)
T COG4152 68 QEI-KNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQK 138 (300)
T ss_pred hhh-hhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHH
Confidence 543 456899999999999999999999999887 4677888888999999999999888774 6799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 989 l~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
+.+-.+++++|++|+||||.|||||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||++++|++ |+.|..|++
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 99999999999999999999999999999999999999999999999999997 68999999999996 688888986
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=341.11 Aligned_cols=217 Identities=25% Similarity=0.281 Sum_probs=178.6
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.+. .++.+|+|+||++++|+++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhh
Confidence 56788887763 023599999999999999999999999999999999998663 4799999998753
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcC-----CCCCCHHHHHHHHHHHHHHcCCccccccccCCCC
Q 000971 909 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL-----PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 977 (1206)
Q Consensus 909 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~ 977 (1206)
. ..+++.+||++|++.+++.+||+||+.+...-.. ......+..++++.++++.++|.+..++.
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1235679999999988899999999976421100 00111233456788999999998777765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+..||||||||++||+||+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ .+.+.||++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 3579999999999999999999999999999999999999999999998764 899999999987 57788999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 222 -G~i~~~~~~ 230 (243)
T TIGR02315 222 -GEIVFDGAP 230 (243)
T ss_pred -CEEEecCCH
Confidence 788888875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=342.25 Aligned_cols=215 Identities=20% Similarity=0.298 Sum_probs=182.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++ ++.+|+||||+|++|++++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 478999998763 24699999999999999999999999999999999998663 479999999875
Q ss_pred Ccc------cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 000971 908 KQE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1206)
Q Consensus 908 ~~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~L 981 (1206)
... ..++.++|++|+..+++.+||.||+.+...... ..+.+..+..+.++++.++|.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 134568999999988899999999987543211 1233444556888999999988777764 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
|||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 57788999999985 799
Q ss_pred EEEcCC
Q 000971 1061 IYVGPL 1066 (1206)
Q Consensus 1061 ~~~g~~ 1066 (1206)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 999875
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=346.73 Aligned_cols=217 Identities=25% Similarity=0.308 Sum_probs=180.7
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++.++... .....+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 68999999884210 0113599999999999999999999999999999999998764 4799999998763
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 000971 909 Q-------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 978 (1206)
Q Consensus 909 ~-------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~ 978 (1206)
. ..+++.+|||+|++ .++ ..||+||+.|+.... ..+.++..+.++++++.++|. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----P 143 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----c
Confidence 1 23456799999986 344 479999999875332 234445556789999999997 556665 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|+++ ++.+.+||+++|++
T Consensus 144 ~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~- 221 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK- 221 (290)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 999999999987 57889999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 222 G~i~~~g~~ 230 (290)
T PRK13634 222 GTVFLQGTP 230 (290)
T ss_pred CEEEEECCH
Confidence 799999975
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=348.68 Aligned_cols=206 Identities=26% Similarity=0.381 Sum_probs=178.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc--cceEEEecCCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (1206)
..+|+|||+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 46999999999999999999999999999999999999997 9999999998864322 467999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.|.++..+... .+....++.+++.+||.+.+++.++
T Consensus 97 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 137 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG----- 137 (306)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh-----
Confidence 9999998665433110 0112245678899999988887765
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|..+++.++||+|++|++|+
T Consensus 138 ~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 138 ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999853 3 5566668888999999999999999999
Q ss_pred EEEecChHHHHH
Q 000971 403 IVYQGPRELVLE 414 (1206)
Q Consensus 403 iv~~G~~~~~~~ 414 (1206)
+++.|+++++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998754
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=365.20 Aligned_cols=210 Identities=22% Similarity=0.404 Sum_probs=176.4
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIG 239 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~ 239 (1206)
++.+||+|+|++|+|||.+||+|||||||||+.+.|..+++|+ +|+|.+||+|+.++++ ++.+|+|.|+|.+|.
T Consensus 479 p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs 555 (716)
T KOG0058|consen 479 PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS 555 (716)
T ss_pred CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeec
Confidence 4567999999999999999999999999999999999999998 9999999999998876 478999999999987
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
. ||+|||.|+.. . .+.|..+.++. +++..--+.++++.+||.||++
T Consensus 556 ~-sI~eNI~YG~~--~-----------------------~t~e~i~~AAk--------~ANah~FI~~~p~gY~T~VGEk 601 (716)
T KOG0058|consen 556 G-SIRENIAYGLD--N-----------------------ATDEEIEAAAK--------MANAHEFITNFPDGYNTVVGEK 601 (716)
T ss_pred c-cHHHHHhcCCC--C-----------------------CCHHHHHHHHH--------HhChHHHHHhCccccccccCCc
Confidence 5 99999999754 1 11122222221 1111123567899999999998
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
+. .||||||||++|||||+.+|.||+|||.||+||+++...+.+.|.+..+ ++|+++ |.|.. .+.+.+|+|+|++
T Consensus 602 G~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlv-IAHRL-STV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 602 GS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLV-IAHRL-STVRHADQIVVID 676 (716)
T ss_pred cc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEE-Eehhh-hHhhhccEEEEEc
Confidence 77 6999999999999999999999999999999999999999999988653 355554 65654 5678899999999
Q ss_pred CCeEEEecChHHHHH
Q 000971 400 DGQIVYQGPRELVLE 414 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1206)
+|++++.|+++++++
T Consensus 677 ~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 677 KGRVVEMGTHDELLS 691 (716)
T ss_pred CCeEEecccHHHHhh
Confidence 999999999999874
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=346.56 Aligned_cols=218 Identities=23% Similarity=0.311 Sum_probs=180.9
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.++... .....+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 78899999885210 0113599999999999999999999999999999999998764 3799999986531
Q ss_pred ---------------------------cccccceEEEeecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHH
Q 000971 909 ---------------------------QETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960 (1206)
Q Consensus 909 ---------------------------~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l 960 (1206)
....++.+|||+|++ ..+...||+|++.|+.... ..+.++.++++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 122456799999985 2334579999999865432 234556667899999
Q ss_pred HHcCCc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000971 961 ELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1039 (1206)
Q Consensus 961 ~~l~L~-~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1039 (1206)
+.+||. +..++. +..||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.+.|+|||+++|+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 567765 35799999999999999999999999999999999999999999999998779999999999
Q ss_pred CchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1040 PGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1040 p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
+. .+.+.+||+++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 86 57789999999985 789999985
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=344.49 Aligned_cols=217 Identities=26% Similarity=0.351 Sum_probs=181.1
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67899999885110 0113599999999999999999999999999999999998764 4899999998763
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 000971 909 Q-------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 978 (1206)
Q Consensus 909 ~-------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~ 978 (1206)
. ..+++.+|||+|++ .+++ .||.|++.|..... ..+.++.+.++.++++.++|. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23456799999986 3444 69999999875432 234555667789999999996 455655 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 221 ~i~~~g~~ 228 (288)
T PRK13643 221 HIISCGTP 228 (288)
T ss_pred EEEEECCH
Confidence 99999985
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=332.29 Aligned_cols=208 Identities=24% Similarity=0.319 Sum_probs=175.8
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ +++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 56888888773 123699999999999999999999999999999999998763 4899999998653
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
.. .+++.++|++|++.+++.+|++||+.+....+ ....++....++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 21 13567899999998888899999998865433 1233444556889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|+++ ++...+|++++|++ |++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i 215 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHL 215 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999777999999999987 57778999999986 564
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=331.65 Aligned_cols=205 Identities=24% Similarity=0.354 Sum_probs=174.1
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
.++|+++.++ ++.+|+++||++++|+++||+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCc
Confidence 5788888764 24699999999999999999999999999999999998663 47999999987531
Q ss_pred -----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 910 -----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 910 -----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
..+++.++|++|++.+++.+|+.||+.+...... ....++.++.++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2345679999999998989999999987642111 1233444567889999999988777763 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|+++ ++.+.+|++++|++|
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g 211 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDG 211 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877999999999987 577889999999864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=330.87 Aligned_cols=209 Identities=32% Similarity=0.477 Sum_probs=176.4
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ +..+|+|+||++++| ++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccc
Confidence 35788887763 236999999999999 9999999999999999999998663 4899999998754
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
. ...++.++|++|++.+++.+||.||+.+...++. ...++..+.++++++.++|.+..++.+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 3 2235678999999999999999999988654431 223334566889999999988777663 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|||+++|++. .+.+.+|++++|++ |++++.|
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999876 599999999986 46778999999985 6877654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=383.99 Aligned_cols=216 Identities=23% Similarity=0.350 Sum_probs=187.7
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||++.++. +++.+|+|||+.+++||++||+|||||||||||++|+|...+ .+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 46899999988741 135699999999999999999999999999999999998764 48999999987
Q ss_pred CCc--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 907 KKQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 907 ~~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. ...++.++.++++++.++|.+..++.+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2345679999999999999999999999876653 233445567899999999998888874 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
|||||+||+||+.+|+||||||||+|||+.+++.+++.|++++ +|+|||++||+++ ++...+||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999985 6999999999987 57788999999995 7899998
Q ss_pred CC
Q 000971 1065 PL 1066 (1206)
Q Consensus 1065 ~~ 1066 (1206)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 74
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=324.04 Aligned_cols=222 Identities=27% Similarity=0.369 Sum_probs=189.7
Q ss_pred cccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCC
Q 000971 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNH 237 (1206)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~ 237 (1206)
-....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|.+++...++ .-++..+|...+
T Consensus 14 FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl 90 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRL 90 (250)
T ss_pred cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccccc
Confidence 34578999999999999999999999999999999999999998 99999999999988775 357889999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
|++|||.||+..++..+.. +.......+ ...+..+....+..+|+.+||.+.+|+..|
T Consensus 91 F~~lTVlENv~va~~~~~~---~~~~l~~~~-------------------~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~ 148 (250)
T COG0411 91 FPGLTVLENVAVGAHARLG---LSGLLGRPR-------------------ARKEEREARERARELLEFVGLGELADRPAG 148 (250)
T ss_pred cCCCcHHHHHHHHhhhhhh---hhhhhcccc-------------------chhhHHHHHHHHHHHHHHcCCchhhcchhh
Confidence 9999999999998764421 000000000 000112344567889999999999999887
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
+ ||+||+||+.|||||+.+|++||||||.+||.+.-+.++.+.|+++.+ .++++|+.+.|++.-++.+||+|+|
T Consensus 149 ~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~V 222 (250)
T COG0411 149 N-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVV 222 (250)
T ss_pred c-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEe
Confidence 4 999999999999999999999999999999999999999999999875 4567788899999999999999999
Q ss_pred EcCCeEEEecChHHHHH
Q 000971 398 LSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1206)
|+.|+++..|+++++.+
T Consensus 223 l~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 223 LNYGEVIAEGTPEEVRN 239 (250)
T ss_pred ccCCcCcccCCHHHHhc
Confidence 99999999999999863
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=322.07 Aligned_cols=207 Identities=27% Similarity=0.377 Sum_probs=180.6
Q ss_pred CceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCccc----ccceEEEeecCCCCCC
Q 000971 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIHSP 927 (1206)
Q Consensus 852 ~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~q~~~~~~ 927 (1206)
+...+++||||++++||++||+||||||||||+|+|+|...+ .+|+|.++|.++.... .+.-++--+|...+++
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 567899999999999999999999999999999999998874 4799999999865422 2445778899999999
Q ss_pred CCCHHHHHHHhhhhc--------CCCC-CCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhC
Q 000971 928 FVTVYESLLYSAWLR--------LPPE-VDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVAN 998 (1206)
Q Consensus 928 ~~Tv~e~l~~~a~lr--------~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~ 998 (1206)
.+||.||+..++..+ .+.. -..++..++..++|+.+||.+.+|.+.| +||+||||||.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 999999998875433 1111 1245567788999999999999999865 6999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 999 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 999 P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
|++|+||||.+||.+.....+.+.|+++.++ |.||+++-|+++. ++.+||||++|+. |+++..|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCHH
Confidence 9999999999999999999999999999874 7999999999984 8999999999996 7999999863
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=333.99 Aligned_cols=217 Identities=24% Similarity=0.296 Sum_probs=173.4
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.+... .....+|+|+|++|++|+++||+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5688898877410 0012699999999999999999999999999999999998653 4799999998764
Q ss_pred c------ccccceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCC
Q 000971 909 Q------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 979 (1206)
Q Consensus 909 ~------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~ 979 (1206)
. ..+++.+||++|++ .+++.+||+||+.+....... ....+..+..++++++.+++. ...+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 456789999999876443321 111111122236889999995 455655 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
.||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999876 899999999987 56778999999985 6
Q ss_pred EEEEEc
Q 000971 1059 QEIYVG 1064 (1206)
Q Consensus 1059 ~~~~~g 1064 (1206)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 877654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=348.12 Aligned_cols=218 Identities=24% Similarity=0.347 Sum_probs=181.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|+++.++... .....+|+|||++|++|+++||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 589999999885210 0123599999999999999999999999999999999998764 479999999765
Q ss_pred Cc-------------------ccccceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 000971 908 KQ-------------------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966 (1206)
Q Consensus 908 ~~-------------------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~ 966 (1206)
.. ..+++.+|||+|++ .+++ .||+||+.|+.... ..+.++...++.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13456799999986 3554 59999998864321 234445556788999999996
Q ss_pred -cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 000971 967 -PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIF 1045 (1206)
Q Consensus 967 -~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~ 1045 (1206)
+..++. +..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||+++|+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 456554 4579999999999999999999999999999999999999999999998877999999999986 477
Q ss_pred HhcCeEEEEecCcEEEEEcCC
Q 000971 1046 DAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1046 ~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
+.+|++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999985 799999985
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=337.67 Aligned_cols=215 Identities=20% Similarity=0.272 Sum_probs=181.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++ .+.+|+||||.|++|++++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 478999998874 24699999999999999999999999999999999998663 479999999765
Q ss_pred Cc----------------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-c
Q 000971 908 KQ----------------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-Q 970 (1206)
Q Consensus 908 ~~----------------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~ 970 (1206)
.. ..+++.++|++|++.+++.+||+||+.+...... .....+.++++.++++.+++.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 1345679999999999999999999987542111 123445566789999999998753 5
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCe
Q 000971 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDE 1050 (1206)
Q Consensus 971 ~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~ 1050 (1206)
.. +..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|+++ ++...||+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 44 3579999999999999999999999999999999999999999999999877999999999987 57778999
Q ss_pred EEEEecCcEEEEEcCC
Q 000971 1051 LFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1051 v~ll~~gg~~~~~g~~ 1066 (1206)
+++|++ |++++.|+.
T Consensus 222 i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 222 VIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999986 789988874
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=311.56 Aligned_cols=216 Identities=26% Similarity=0.374 Sum_probs=182.7
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
|..+|++|++. .+++|++||++++|||++||+|||||||||||++|+|...+ .+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 45689999874 45799999999999999999999999999999999997764 3799999999876
Q ss_pred cc---cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 909 QE---TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 909 ~~---~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
.. ...+..+.++|+..+....||+|-+.++..-.. ..-...+..+.++++|+..++.+++.+. ...|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~-~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR-SGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc-cCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchH
Confidence 53 345677999999888777899999998753211 1112224445688999999999988776 35799999
Q ss_pred HHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 986 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 986 rqrl~ia~aL~~------~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
||||.+||.|+. ++++||||||||.||...+..++++.|+++++|..|+|+-||.+. ...++|||++|++ |+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999975 346999999999999999999999999999999999999999985 6788999999995 79
Q ss_pred EEEEcCCC
Q 000971 1060 EIYVGPLG 1067 (1206)
Q Consensus 1060 ~~~~g~~~ 1067 (1206)
++..|++.
T Consensus 219 v~a~g~p~ 226 (259)
T COG4559 219 VIASGSPQ 226 (259)
T ss_pred EeecCCHH
Confidence 99999874
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=343.15 Aligned_cols=215 Identities=26% Similarity=0.370 Sum_probs=181.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++. ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYSD------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 5889999998741 23599999999999999999999999999999999998663 489999999876
Q ss_pred C-----cccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 000971 908 K-----QETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1206)
Q Consensus 908 ~-----~~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~L 981 (1206)
. ...+++.+||++|++. .+...||+||+.+..... ..+.++..+.++++++.++|.+..++. +..|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 3 1234567999999874 234579999998864322 233445556789999999999887776 4579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
|||||||++|||||+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++...||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 899999999987 46678999999986 689
Q ss_pred EEEcCC
Q 000971 1061 IYVGPL 1066 (1206)
Q Consensus 1061 ~~~g~~ 1066 (1206)
++.|+.
T Consensus 221 ~~~g~~ 226 (283)
T PRK13636 221 ILQGNP 226 (283)
T ss_pred EEeCCH
Confidence 999985
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=332.27 Aligned_cols=199 Identities=26% Similarity=0.418 Sum_probs=165.1
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC--CCCCH
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTV 931 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~~Tv 931 (1206)
+.+|+|||++|++|++++|+||||||||||+++|+|...+ .+|+|.++|.+.. ..++.++|++|++.+. ..+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 4699999999999999999999999999999999998653 4799999998653 2456799999998763 34899
Q ss_pred HHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000971 932 YESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010 (1206)
Q Consensus 932 ~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsg 1010 (1206)
+||+.+....... .....+..++.++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 00112334456899999999987777663 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 1011 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 1011 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999998878999999999987 57788999999974 4 56654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=351.71 Aligned_cols=210 Identities=26% Similarity=0.383 Sum_probs=178.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+++|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++.++|.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 45999999999999999999999999999999999999987 9999999999876544 3679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+....... .. ..+....++.+++.+||++..+..+ ..
T Consensus 92 ~eni~~~~~~~~~~~~------~~------------------------~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------PN------------------------AAAIKAKVTQLLEMVQLAHLADRYP-----AQ 136 (353)
T ss_pred HHHHHhhhhhcccccC------CC------------------------HHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 9999997643210000 00 0012234678899999988776554 47
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+.+++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE-LKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998653 345566688999999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=336.37 Aligned_cols=214 Identities=27% Similarity=0.364 Sum_probs=181.4
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ ++.+|+|+||++++|+++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67888887763 24699999999999999999999999999999999998663 4799999998753
Q ss_pred c----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 909 Q----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 909 ~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
. ...++.++|++|++.+++.+||.||+.+...++. ....++.+..++++++.+++.+..+.. +..||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 2 1134569999999988888999999987543321 123344556789999999998776665 3579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++...+|++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999986 57889999999985 7899888
Q ss_pred CC
Q 000971 1065 PL 1066 (1206)
Q Consensus 1065 ~~ 1066 (1206)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 75
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=335.86 Aligned_cols=214 Identities=24% Similarity=0.322 Sum_probs=178.9
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEcCc
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISGY 905 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 905 (1206)
+.++||++.++ +..+|+|+||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 57889988763 235999999999999999999999999999999999976532 12799999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc----cccccccCCC
Q 000971 906 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK----PLIQSLVGLP 976 (1206)
Q Consensus 906 ~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~~g~~ 976 (1206)
+... ...++.++|++|++.+++ .|++||+.+....+. ....++..+.++++++.++|. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 224567999999988888 999999988654331 123344556789999999997 555554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999876 499999999987 57788999999996
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 789988874
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=305.02 Aligned_cols=201 Identities=25% Similarity=0.393 Sum_probs=173.2
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHHHHH
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~Etl~ 248 (1206)
.+++.|++||+++|+|||||||||||+.|+|+..|. +|+|.+||.+.....| +|-++.++|+.++|..|||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 478899999999999999999999999999999997 9999999999987665 578999999999999999999999
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
++.. ++-+ +.. +....++.++...||..+.+.+.+ .|||||
T Consensus 94 LGl~---P~Lk------L~a-------------------------~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGq 134 (231)
T COG3840 94 LGLS---PGLK------LNA-------------------------EQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQ 134 (231)
T ss_pred ccCC---cccc------cCH-------------------------HHHHHHHHHHHHhChhhHhhhCcc-----ccCchH
Confidence 8743 1111 111 112346778999999999887665 699999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEecC
Q 000971 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1206)
Q Consensus 329 kkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~ 408 (1206)
||||++||+|+.+.+|++||||+|+||+.-+.+....+.+++...+.|+++ ++|..+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tllm-VTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM-VTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEE-EeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999998876666666 5555578899999999999999999999
Q ss_pred hHHHH
Q 000971 409 RELVL 413 (1206)
Q Consensus 409 ~~~~~ 413 (1206)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88764
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=334.05 Aligned_cols=206 Identities=29% Similarity=0.381 Sum_probs=172.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1206)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 46999999999999999999999999999999999999987 9999999998765432 35699999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+.+||+||+.++......... .+....++.+++.+||.+..++.++
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 135 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLSE---------------------------------EEIREIVLEKLEAVGLRGAEDLYPA- 135 (235)
T ss_pred CCCcHHHHHHHHHhhccCCCH---------------------------------HHHHHHHHHHHHHcCCchhhcCChh-
Confidence 999999999986432110000 0112235678899999876666554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++... +++|+.++|..+++..+||+|++|
T Consensus 136 ----~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 136 ----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL-GLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhcCEEEEE
Confidence 699999999999999999999999999999999999999999999876533 455566788888899999999999
Q ss_pred cCCeEEEecChHHH
Q 000971 399 SDGQIVYQGPRELV 412 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1206)
++|++++.|+++++
T Consensus 211 ~~G~i~~~g~~~~~ 224 (235)
T cd03261 211 YDGKIVAEGTPEEL 224 (235)
T ss_pred ECCeEEEecCHHHH
Confidence 99999999998765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=343.68 Aligned_cols=217 Identities=21% Similarity=0.328 Sum_probs=180.6
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|...+ ..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 78999999885210 0123599999999999999999999999999999999998764 4799999998763
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 000971 909 Q-------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 978 (1206)
Q Consensus 909 ~-------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~ 978 (1206)
. ..+++.+|||+|++ .+++ .||.||+.|..... ..+.++..+.+.++++.+||. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 13456799999986 3444 59999998864322 234455567789999999996 566665 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~- 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE- 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 57999999999999999999999999999999999999999999999975 4999999999987 57788999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 222 G~i~~~g~~ 230 (286)
T PRK13646 222 GSIVSQTSP 230 (286)
T ss_pred CEEEEECCH
Confidence 799999874
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=337.17 Aligned_cols=206 Identities=21% Similarity=0.277 Sum_probs=177.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|++++++ ++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 489999998874 23599999999999999999999999999999999998663 479999998765
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
. .+++.++|++|++.+++.+||+||+.+... . ..+..+.++++.++|.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 235679999999988888999999987421 0 12345788999999988777663 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ .+...+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999987 57788999999985 788887764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=353.15 Aligned_cols=206 Identities=23% Similarity=0.326 Sum_probs=178.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
..+|+|+|+.|++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..+||++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35899999999999999999999999999999999999987 9999999999876544 4689999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
.||+.|+.+.++... .+....++.+++.+||.+..+..+ ..
T Consensus 109 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~~~~-----~~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAKRKP-----HQ 149 (377)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999999865432100 012234678899999987776554 47
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.+.. +.+++.++|+..++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999998876544 45666688899999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=330.76 Aligned_cols=193 Identities=25% Similarity=0.369 Sum_probs=164.0
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCC-CCCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDI-HSPFV 929 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~-~~~~~ 929 (1206)
+.+|+|+||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 4699999999999999999999999999999999998653 47999999986532 234567899999974 35678
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000971 930 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1009 (1206)
Q Consensus 930 Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTs 1009 (1206)
|++||+.+....+ .......+..++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764332 1223344556889999999987777663 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 1010 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1010 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999986 577789999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=318.76 Aligned_cols=206 Identities=27% Similarity=0.326 Sum_probs=177.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC----ccceEEEecCCC--CCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV----PERTAAYISQHD--NHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d--~~~ 238 (1206)
.++|+|||++|.+||.++|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+|++ .+.
T Consensus 20 ~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn 96 (252)
T COG1124 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96 (252)
T ss_pred hhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccC
Confidence 36999999999999999999999999999999999999998 999999998776542 246789999996 578
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
|..||++.|.-+.+..+... .+..+.++|+.+||+...- +
T Consensus 97 P~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~l----~ 136 (252)
T COG1124 97 PRRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSFL----D 136 (252)
T ss_pred cchhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHHH----h
Confidence 99999999987655433211 1122667899999986432 3
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
+.+..|||||||||+|||||..+|++|++|||||+||++...+|++.|.++.+ ..+.+++.++|+..-+..+||+|+||
T Consensus 137 R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl~~v~~~cdRi~Vm 215 (252)
T COG1124 137 RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDLALVEHMCDRIAVM 215 (252)
T ss_pred cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcHHHHHHHhhheeee
Confidence 56668999999999999999999999999999999999999999999999876 45677777999999999999999999
Q ss_pred cCCeEEEecChHHHHH
Q 000971 399 SDGQIVYQGPRELVLE 414 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1206)
++|++++.+|.+++..
T Consensus 216 ~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 216 DNGQIVEIGPTEELLS 231 (252)
T ss_pred eCCeEEEeechhhhhc
Confidence 9999999999998864
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=342.52 Aligned_cols=216 Identities=23% Similarity=0.303 Sum_probs=182.7
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||++.++.. ..+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 37899999887421 123599999999999999999999999999999999998764 489999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ...++.+||++|++. .++..||+||+.|..... ..+.++.++.++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999974 567789999998865332 2345555667899999999998877764 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||++||+||+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999986 45 57999999985 79998
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 8875
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=346.36 Aligned_cols=206 Identities=27% Similarity=0.374 Sum_probs=176.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1206)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999875422 1356999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.|.++..+... .+....++.+++.+||.+..++.++
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVG----- 123 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchh-----
Confidence 9999998765433110 0112245678999999988877665
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|..+++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 3 4556668888899999999999999999
Q ss_pred EEEecChHHHHH
Q 000971 403 IVYQGPRELVLE 414 (1206)
Q Consensus 403 iv~~G~~~~~~~ 414 (1206)
+++.|+++++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=304.92 Aligned_cols=199 Identities=27% Similarity=0.396 Sum_probs=175.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1206)
..+|+|||+.|++|||+.|+||||||||||||.|.+...|+ .|+|.+||+++..... +|.+|+|+|+..++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 56999999999999999999999999999999999999998 9999999999875433 47899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+..||.||+.|+.+..|... .+.+..+.++|+..||.+.++..
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~l--- 134 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARAL--- 134 (223)
T ss_pred ccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhcC---
Confidence 99999999999988765322 13455678899999999988754
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
+..|||||+|||+||||++.+|++|+-||||-.||+..+.+|++.+.++.. .+|+|+..+|+..-+..+--+++.|
T Consensus 135 --P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 135 --PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred --ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEE
Confidence 457999999999999999999999999999999999999999999998754 4677777889988888888899999
Q ss_pred cCCeEEEec
Q 000971 399 SDGQIVYQG 407 (1206)
Q Consensus 399 ~~G~iv~~G 407 (1206)
++|+++...
T Consensus 211 ~~Grl~~d~ 219 (223)
T COG2884 211 EDGRLVRDE 219 (223)
T ss_pred eCCEEEecc
Confidence 999998754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=329.02 Aligned_cols=211 Identities=25% Similarity=0.329 Sum_probs=173.7
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.++.. ...+.+|+++||+|++|++++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 5678888877411 0124699999999999999999999999999999999998663 4899999998753
Q ss_pred cc---c---cc-ceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 000971 909 QE---T---FA-RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1206)
Q Consensus 909 ~~---~---~~-~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~L 981 (1206)
.. . ++ +.++|++|++.+++.+||+||+.+....+. ....+..+.+.++++.++|.+..++.+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 22 568999999988889999999988654331 223334456889999999988777763 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
|||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999998764 899999999986 34 55799999986 565
Q ss_pred E
Q 000971 1061 I 1061 (1206)
Q Consensus 1061 ~ 1061 (1206)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 3
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=315.67 Aligned_cols=207 Identities=25% Similarity=0.379 Sum_probs=174.3
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHIG 239 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1206)
..+||++||+.+++||+++|+||||+||||||++|+|..++. +|+|.++|.+++..++. +-++||||....||
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 468999999999999999999999999999999999999986 99999999999988775 46899999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-CcccccccccC
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LEVCADTMVGD 318 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~ 318 (1206)
.|||.|||..++....... . .....|.+.+.|= |....+..-|
T Consensus 92 ~LTVeENL~~g~~~~~~~~-~----------------------------------~~~~~e~v~~lFP~Lker~~~~aG- 135 (237)
T COG0410 92 RLTVEENLLLGAYARRDKE-A----------------------------------QERDLEEVYELFPRLKERRNQRAG- 135 (237)
T ss_pred hCcHHHHHhhhhhcccccc-c----------------------------------ccccHHHHHHHChhHHHHhcCccc-
Confidence 9999999998764322100 0 0000233333332 4444455555
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
.|||||+|-++|||||+++|++|+|||||.||-|.-..+|.+.|+++.+. ++.+|+.+.|....+.+++|+.+||
T Consensus 136 ----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 136 ----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYVL 210 (237)
T ss_pred ----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEEE
Confidence 59999999999999999999999999999999999999999999998754 4577778999999999999999999
Q ss_pred cCCeEEEecChHHHHH
Q 000971 399 SDGQIVYQGPRELVLE 414 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1206)
.+|++++.|+.+++.+
T Consensus 211 e~Griv~~G~~~eL~~ 226 (237)
T COG0410 211 ENGRIVLSGTAAELLA 226 (237)
T ss_pred eCCEEEEecCHHHHhc
Confidence 9999999999998753
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=335.81 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=181.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++.++ .+.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 36788988774 23699999999999999999999999999999999998763 4899999998653
Q ss_pred c----------------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 000971 909 Q----------------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972 (1206)
Q Consensus 909 ~----------------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ 972 (1206)
. ..+++.++|++|++.+++..|+.||+.+..... .....+..++.+.++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 123567999999999999999999998753211 1123444556789999999998877765
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeE
Q 000971 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 973 ~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++...+|++
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998765 899999999987 577889999
Q ss_pred EEEecCcEEEEEcCC
Q 000971 1052 FLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1052 ~ll~~gg~~~~~g~~ 1066 (1206)
++|++ |++++.|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 789988874
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=340.16 Aligned_cols=213 Identities=22% Similarity=0.306 Sum_probs=179.8
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.++ +++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECC
Confidence 56888888763 123599999999999999999999999999999999998663 4799999998764
Q ss_pred c----ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 909 Q----ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 909 ~----~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
. ...++.+||++|++. .+...|+.||+.|..... ..+.++.++.++++++.++|.+..++.+ ..||+
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 233567999999975 356689999998865332 2334455567899999999998877764 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
|||||++||+||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|++. ++ ..+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999987 45 66999999986 789999
Q ss_pred cCC
Q 000971 1064 GPL 1066 (1206)
Q Consensus 1064 g~~ 1066 (1206)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 985
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=330.95 Aligned_cols=212 Identities=26% Similarity=0.384 Sum_probs=178.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|++++++ ++.+|+|||++|++|+++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 56788887763 24699999999999999999999999999999999998663 4799999998653
Q ss_pred cc--cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 909 QE--TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 909 ~~--~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
.. ...+.++|++|++.+++.+|++||+.+.+..+ ....+...+.+.++++.++|.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 21 22346899999998888999999998765433 1233444566889999999988777664 47999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++. .+|++++|++ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999875 5899999999987 354 5999999985 78888887
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 4
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=333.95 Aligned_cols=212 Identities=22% Similarity=0.321 Sum_probs=178.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-+.++|+++.++ .+.+|+++||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 378999998763 23699999999999999999999999999999999998663 479999999875
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc-CCccccccccCCCCCCCCC
Q 000971 908 KQE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 908 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~~g~~~~~~LS 982 (1206)
... ..++.++|++|++.+++.+||.||+.+..... ..++..+.++++++.+ ++.+..+.. +..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 13457999999998888899999998754221 1222344577788888 476655554 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999986 68899999999986 79999
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9985
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=352.03 Aligned_cols=206 Identities=26% Similarity=0.384 Sum_probs=176.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 45999999999999999999999999999999999999987 9999999999865443 3679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+..+... .+....++.+++.+||++..+..++ .
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~~~~~~~~-----~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAHLLDRKPK-----A 133 (369)
T ss_pred HHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----h
Confidence 999999765332100 0112346778999999887776554 6
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999886533 45566678888899999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
++.|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=347.02 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=176.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1206)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999987 9999999999875432 35799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+.+||+||+.|.....+... .+....++.+++.+||++..++.+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 138 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYP-- 138 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998754332100 011224567899999988777654
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|..+++.++||+|++|
T Consensus 139 ---~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 139 ---AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999986533 455666888888999999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988774
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=304.64 Aligned_cols=201 Identities=25% Similarity=0.392 Sum_probs=179.3
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
..+|+|||+.|.+||.++++||||||||||||+++|..++ ..|.|.+||.++....-. -|.|+|++.++|.+||.+
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPgae--rgvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPGAE--RGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCCcc--ceeEeccCccchhhHHHH
Confidence 3599999999999999999999999999999999998874 489999999987654322 489999999999999999
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~ 1013 (1206)
|+.|+..++ .+++.++.+.+.+.+..+||.+..++.+ -.||||||||+.|||||+.+|++|+||||.+.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999998887 4678899999999999999999888874 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecC-cEEEEEcCCC
Q 000971 1014 RAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG-GQEIYVGPLG 1067 (1206)
Q Consensus 1014 ~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~g-g~~~~~g~~~ 1067 (1206)
-+++.++++|-++.+ +|+.++++||+.. +..-.++++++|+.| |+++..=+++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999875 5999999999987 455568999999865 6788776653
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=345.41 Aligned_cols=229 Identities=21% Similarity=0.244 Sum_probs=185.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-++++||+.+++...+........+...+|+||||+|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 488999998875321000000001235799999999999999999999999999999999998764 479999999876
Q ss_pred Ccc------cccceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 000971 908 KQE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 978 (1206)
Q Consensus 908 ~~~------~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~ 978 (1206)
... .+++.++||+|++ .++|.+||.|++.+......+ ..+.++.++.+.++++.++|. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2356799999997 578899999999886443211 234556677889999999995 455665 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
..||||||||++||+||+.+|++|+|||||+|||..++..|++.|+++.++ |.|||++||+++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 999999999986 46778999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 799999985
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=341.25 Aligned_cols=219 Identities=24% Similarity=0.307 Sum_probs=180.7
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.+..+. ...+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 367899998874110 0013599999999999999999999999999999999998764 489999999875
Q ss_pred Cc-------ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 000971 908 KQ-------ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 978 (1206)
Q Consensus 908 ~~-------~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~ 978 (1206)
.. ...++.+||++|++. .+..+||.||+.|....+ ....++..++++++++.++|. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 32 123457999999963 233589999998765332 233455566789999999997 5667663
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||+++|+++ ++.+.||++++|++ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777999999999987 57889999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13641 222 KLIKHASP 229 (287)
T ss_pred EEEEeCCH
Confidence 89998874
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=328.44 Aligned_cols=208 Identities=24% Similarity=0.330 Sum_probs=178.0
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
.++|+++.++ ++.+|+|+||++++||++||+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEeccc
Confidence 5678877663 24699999999999999999999999999999999998653 48999999987543
Q ss_pred ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHH
Q 000971 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL 989 (1206)
Q Consensus 910 ~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl 989 (1206)
.. .+.++|++|++.+++.+|++||+.+....+. .. +..+.++++.++|.+..+..+ ..||+|||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 2468999999988888999999987654331 11 235788999999998777763 47999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 990 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 990 ~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
+||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|+..
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999999999999999999999999999877999999999987 57789999999985 7899999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=336.12 Aligned_cols=217 Identities=22% Similarity=0.267 Sum_probs=180.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++ ++.+|+++|+++++|+++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEEC
Confidence 478999998763 24699999999999999999999999999999999998663 489999999875
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC----------C--CCCHHHHHHHHHHHHHHcCCcccccc
Q 000971 908 KQE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLP----------P--EVDSETRKMFIEEVMELVELKPLIQS 971 (1206)
Q Consensus 908 ~~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~----------~--~~~~~~~~~~v~~~l~~l~L~~~~~~ 971 (1206)
... . .+..++|++|++.+++.+||+||+.+....... . .....+....++++++.++|.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233489999999999999999999886431110 0 00112234568889999999887777
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCe
Q 000971 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDE 1050 (1206)
Q Consensus 972 ~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~ 1050 (1206)
.+ ..||||||||++||++|+.+|++|||||||+|||+.+...+.+.|++++++ |+|||+++|+++ ++.+.+|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 64 579999999999999999999999999999999999999999999999775 899999999987 57788999
Q ss_pred EEEEecCcEEEEEcCC
Q 000971 1051 LFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1051 v~ll~~gg~~~~~g~~ 1066 (1206)
+++|++ |++++.|+.
T Consensus 224 i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 224 IYVVNQ-GTPLANGTP 238 (255)
T ss_pred EEEEEC-CeEEecCCH
Confidence 999985 789998885
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=332.90 Aligned_cols=219 Identities=21% Similarity=0.257 Sum_probs=176.8
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35788888773 24699999999999999999999999999999999997411135799999998754
Q ss_pred cc---cc-cceEEEeecCCCCCCCCCHHHHHHHhhhhcCCC----CCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCC
Q 000971 909 QE---TF-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP----EVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 979 (1206)
Q Consensus 909 ~~---~~-~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~----~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~ 979 (1206)
.. .. +..++|++|++.+++.+|++|++.+........ ..+.++..+.+.++++.++|. +..+..++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 11 234899999999999999999998754322110 112233345788999999997 45555432 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHh-cCeEEEEecCc
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRGG 1058 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~-~d~v~ll~~gg 1058 (1206)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ .+... +|++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999877999999999987 46666 799999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 89998874
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=328.87 Aligned_cols=207 Identities=28% Similarity=0.408 Sum_probs=180.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCC----CCCccceEEEecCCC-CCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG----EFVPERTAAYISQHD-NHIG 239 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~----~~~~~~~~~yv~Q~d-~~~~ 239 (1206)
..+|+|+|+.|++|+.++|+||||||||||+++|+|.+.|. +|.|.++|.+.. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999997 899999999865 223357899999995 4577
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
.-||.|.+.|+.+..+... ++...+++.+++.+||.+.++..
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r~---- 135 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDRP---- 135 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccCC----
Confidence 7899999999987665421 12345678899999999987754
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
+..|||||||||+||.+|+.+|++++|||||+|||+....++++.++++.. .++.+||.++|+...+..++|++++|+
T Consensus 136 -p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 136 -PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred -ccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 445566668999999999999999999
Q ss_pred CCeEEEecChHHHHH
Q 000971 400 DGQIVYQGPRELVLE 414 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1206)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877653
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=332.39 Aligned_cols=213 Identities=24% Similarity=0.324 Sum_probs=180.1
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecc
Confidence 67899988774 23599999999999999999999999999999999998763 4799999998642
Q ss_pred ---------cccccceEEEeecCCCCCCCCCHHHHHHHh-hhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCC
Q 000971 909 ---------QETFARISGYCEQNDIHSPFVTVYESLLYS-AWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1206)
Q Consensus 909 ---------~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~-a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~ 978 (1206)
....++.++|++|++.+++.+||.||+.+. .... ....++....+.++++.+|+.+..++.+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 012345789999999999999999999753 2221 1223344567899999999988777763
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999998777999999999987 56778999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (242)
T PRK11124 218 HIVEQGDA 225 (242)
T ss_pred EEEEeCCH
Confidence 89998874
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=338.92 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=181.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|++++++. .+.+|+||||++++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 678999988731 13499999999999999999999999999999999998663 4899999998754
Q ss_pred c---ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 909 Q---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 909 ~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
. ..+++.+||++|++. .+...||.||+.+..... ..+.+..++.++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 2 234567899999974 334579999998765322 2344555567899999999998877764 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999875 899999999987 57789999999986 689999
Q ss_pred cCC
Q 000971 1064 GPL 1066 (1206)
Q Consensus 1064 g~~ 1066 (1206)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 985
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=334.41 Aligned_cols=217 Identities=24% Similarity=0.267 Sum_probs=179.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 904 (1206)
.++++||++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478999998874 235999999999999999999999999999999999986542 3489999999
Q ss_pred ccCC-----cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc----cccccCC
Q 000971 905 YPKK-----QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL----IQSLVGL 975 (1206)
Q Consensus 905 ~~~~-----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~~g~ 975 (1206)
.++. ...+++.++|++|++.+++.+||.||+.+....+.. ....+..++.++++++.+++.+. .+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8753 123456799999999999999999999886543211 11233445568899999998532 3333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++...+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999987 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |++++.|+.
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 5 799998875
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=333.13 Aligned_cols=217 Identities=23% Similarity=0.280 Sum_probs=179.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 904 (1206)
.+.++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 378899988763 246999999999999999999999999999999999976531 3589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc----cccccCCCC
Q 000971 905 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL----IQSLVGLPG 977 (1206)
Q Consensus 905 ~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~~g~~~ 977 (1206)
.++.. ..+++.+||++|++.+++.+||.||+.+....+.. ....++..+.++++++.++|.+. .++.
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87532 23456799999999888899999999886533211 11233445678899999998642 3333
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
+..||||||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 899999999987 57788999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 221 G~i~~~g~~ 229 (250)
T PRK14247 221 GQIVEWGPT 229 (250)
T ss_pred CeEEEECCH
Confidence 788888875
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=334.51 Aligned_cols=214 Identities=24% Similarity=0.297 Sum_probs=177.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 904 (1206)
.+.++|+++.++ ++.+|+||||+|++||++||+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588999998763 245999999999999999999999999999999999976531 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 975 (1206)
.++.. ..+++.+||++|++.+++ +|++||+.|....+ ..+.+..++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 124567999999988887 89999998865432 1233444556889999999853 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||+++|++. ++.+.+|++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 899999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 5 799999875
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=333.88 Aligned_cols=215 Identities=22% Similarity=0.247 Sum_probs=177.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 904 (1206)
.+.++|+++.++ ++.+|+||||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999998874 235999999999999999999999999999999999976532 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc----cccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK----PLIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~~g~ 975 (1206)
.++.. ..+++.+||++|++.+++ +||+||+.|...... .......++.+.++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234567999999988774 899999988653321 112333456688899999884 233443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 46799999999999999999999999999999999999999999999996 4799999999987 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 5 789998874
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=334.67 Aligned_cols=213 Identities=25% Similarity=0.355 Sum_probs=179.5
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ ++.+|+||||+|++|++++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcc
Confidence 67889988774 24699999999999999999999999999999999998653 4799999998653
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
. ..+++.++|++|++.+++.+||+||+.+..... ....+..+..++++++.++|.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 223456899999988878899999998754221 1122333456889999999988777764 5799999
Q ss_pred HHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 986 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 986 rqrl~ia~aL~------~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|+++. ++|.|||+++|++. ++...+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 66999999999987 57789999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 88888875
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=313.97 Aligned_cols=212 Identities=26% Similarity=0.378 Sum_probs=178.9
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||+..| ++.++|+|||+++++||+++|+|||||||||||++|+|..+. .+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 6778887655 346899999999999999999999999999999999998763 3799999999875
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC-CccccccccCCCCCCCCCH
Q 000971 909 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-LKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 909 ~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ..++-++||||....||.+||+|||..++..+.. ++.....++++.+.+= |.+.+++..| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 42 3456799999999999999999999987655422 1122222677777764 6667777644 6999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
||||.|+|||||+.+|++|+|||||.||-|.-...|.++|++++++ |.||+++-+.-. ...+.+||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999976 789999988865 46789999999985 79999
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|+.
T Consensus 218 ~G~~ 221 (237)
T COG0410 218 SGTA 221 (237)
T ss_pred ecCH
Confidence 9985
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=338.48 Aligned_cols=215 Identities=25% Similarity=0.311 Sum_probs=181.8
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-+.++||++.++. ..+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 3789999988741 123599999999999999999999999999999999998764 489999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ...++.+||++|++. .++..||.||+.+..... ..+.++.++.+.++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 223567999999973 566789999998865432 2234455667899999999998888774 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||++||++|+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..+|++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999876 899999999986 35 46999999985 78999
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13635 221 EGTP 224 (279)
T ss_pred ECCH
Confidence 9985
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=326.01 Aligned_cols=208 Identities=25% Similarity=0.329 Sum_probs=172.6
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
.++|+++.++ ++. .|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~ 64 (211)
T cd03298 2 RLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVTA 64 (211)
T ss_pred EEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCc
Confidence 5788887763 122 299999999999999999999999999999998763 47999999987543
Q ss_pred c-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHH
Q 000971 910 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1206)
Q Consensus 910 ~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqr 988 (1206)
. ..++.+||++|++.+++.+|++||+.+....+. .. .+..++.++++++.++|.+..++.+ ..||+|||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHH
Confidence 1 234679999999999999999999987543211 11 1234556899999999988777764 5799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 989 l~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 99999999999999999999999999999999999998754 899999999986 57788999999985 6777643
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=330.80 Aligned_cols=215 Identities=26% Similarity=0.310 Sum_probs=179.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ ++.+|+|+||+|++|++++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 67888887763 24699999999999999999999999999999999998653 4799999998654
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC-----CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 000971 909 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1206)
Q Consensus 909 ~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 979 (1206)
.. ..++.++|++|++.+++.+||+||+.+....... .....+..+..++++++.+++.+..+..+ .
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 21 1234699999999999999999999875431100 00112334567899999999988777664 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|++. ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999875 799999999987 57788999999985 78
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 8888874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=335.01 Aligned_cols=218 Identities=23% Similarity=0.292 Sum_probs=182.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||+++++ .+.+|+||||++++|++++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEh
Confidence 588999998874 24699999999999999999999999999999999998763 479999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ..+++.++|++|++.+++..|++|++.+...-..+ .....+..+..++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 32 22345689999999888889999999875311100 0001123345688999999998877776 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++++|.+ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999987 58899999999985 78999
Q ss_pred EcCCC
Q 000971 1063 VGPLG 1067 (1206)
Q Consensus 1063 ~g~~~ 1067 (1206)
.|+..
T Consensus 225 ~g~~~ 229 (265)
T PRK10253 225 QGAPK 229 (265)
T ss_pred eCCHH
Confidence 98853
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=334.59 Aligned_cols=220 Identities=27% Similarity=0.353 Sum_probs=181.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC-eeEEEEEEcCcc
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYP 906 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 906 (1206)
-+.++||++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478899988763 246999999999999999999999999999999999986543 236999999986
Q ss_pred CCc--------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC-----CCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000971 907 KKQ--------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEVDSETRKMFIEEVMELVELKPLIQSLV 973 (1206)
Q Consensus 907 ~~~--------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~~ 973 (1206)
+.. ...++.++|++|++.+++.+||+||+.+......+ .....++.+..++++++.++|.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345689999999989999999999875321100 01112334567899999999988777764
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEE
Q 000971 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELF 1052 (1206)
Q Consensus 974 g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ 1052 (1206)
..||+|||||++|||||+.+|+||+|||||+|||..++..+.+.|+++.++ |.|||+++|++. .+...+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 479999999999999999999999999999999999999999999999764 899999999987 5788999999
Q ss_pred EEecCcEEEEEcCCC
Q 000971 1053 LMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1053 ll~~gg~~~~~g~~~ 1067 (1206)
+|.+ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 7889998864
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=333.59 Aligned_cols=217 Identities=25% Similarity=0.339 Sum_probs=180.6
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ ++.+|+||||++++|++++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhH
Confidence 67889988763 24699999999999999999999999999999999997653 4799999998653
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
. ..+++.++|++|+..+++.+|+.||+.++...... .....+...+.++++++.++|.+..++.+ ..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 22345689999998888889999999875311000 01111233456889999999988777763 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998877999999999987 67889999999985 6888888
Q ss_pred CCC
Q 000971 1065 PLG 1067 (1206)
Q Consensus 1065 ~~~ 1067 (1206)
+..
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 754
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=343.95 Aligned_cols=206 Identities=25% Similarity=0.370 Sum_probs=176.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc--cceEEEecCCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (1206)
+.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 45999999999999999999999999999999999999997 9999999998764322 467999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.|.....+... .+....++.+++.+||.+..++.++
T Consensus 131 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~----- 171 (340)
T PRK13536 131 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS----- 171 (340)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh-----
Confidence 9999997554332100 0011234567899999988887765
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||+||+.+|++++|||||+|||+.+..++.+.|+++.. . +++|+.++|..+++.++||+|++|++|+
T Consensus 172 ~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~-g~tilisSH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 3 4556668888999999999999999999
Q ss_pred EEEecChHHHHH
Q 000971 403 IVYQGPRELVLE 414 (1206)
Q Consensus 403 iv~~G~~~~~~~ 414 (1206)
++++|+++++.+
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=332.39 Aligned_cols=217 Identities=18% Similarity=0.250 Sum_probs=179.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 904 (1206)
.+.++|+++.++ .+.+|+|||++|++||++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 378899998874 236999999999999999999999999999999999976532 2489999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 975 (1206)
.++.. ..+++.+||++|++.+++.+||+||+.+....+. ....+..++.++++++.++|.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999988999999999987654331 1123444567889999999853 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999999864 799999999986 5778999999997
Q ss_pred c-----CcEEEEEcCC
Q 000971 1056 R-----GGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~-----gg~~~~~g~~ 1066 (1206)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 2 4799999875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=331.13 Aligned_cols=220 Identities=23% Similarity=0.304 Sum_probs=177.5
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--C-CeeEEEEEEc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITIS 903 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i~ 903 (1206)
..+.++||++++. .+.+|+|+||+|++|++++|+||||||||||+++|+|... + .+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3589999998874 2359999999999999999999999999999999999642 1 1347999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCC
Q 000971 904 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1206)
Q Consensus 904 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~ 978 (1206)
|.++.. ..+++.++|++|++.+++ .||+||+.+....+. ....+...+.++++++.+++.+........ .+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHE-SA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-Cc
Confidence 987532 123567999999988887 599999988654331 112233456688899999986422111111 14
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999985 4799999999987 57788999999986 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
+++..|+.
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14242 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 88888874
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=336.54 Aligned_cols=213 Identities=24% Similarity=0.360 Sum_probs=178.1
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcc
Confidence 56889988773 23599999999999999999999999999999999997663 4899999998753
Q ss_pred c-----ccccceEEEeecCCCC-CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 909 Q-----ETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~-----~~~~~~~gyv~q~~~~-~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
. ..+++.+||++|++.. ....|+.||+.+....+ ....++..+.++++++.++|.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1234679999998753 34568999998764332 2233444556889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999987 57788999999985 78999
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 8874
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=334.57 Aligned_cols=217 Identities=29% Similarity=0.376 Sum_probs=180.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++ ++.+|+|+||++++|+++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEeh
Confidence 488999998773 24699999999999999999999999999999999998653 479999999765
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ..+++.++|++|+..+++.+|+.||+.+....... ........++.++++++.++|.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23455799999998888889999999875321110 00111233456889999999988777764 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||++||+||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++++
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998765 899999999987 57789999999985 78898
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|+.
T Consensus 229 ~~~~ 232 (265)
T PRK10575 229 QGTP 232 (265)
T ss_pred ecCH
Confidence 8875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=333.52 Aligned_cols=223 Identities=23% Similarity=0.297 Sum_probs=180.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.++.....+ ..+.+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 67899998874210000 01135799999999999999999999999999999999998663 4799999998754
Q ss_pred cc------cccceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCC
Q 000971 909 QE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 979 (1206)
Q Consensus 909 ~~------~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~ 979 (1206)
.. .+++.++|++|++ .+.+.+||+|++.+...... .......++.+.++++.++|. ...+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1345799999996 46678999999976542111 122334456789999999996 566665 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+...+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999987 57778999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 99999885
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=330.33 Aligned_cols=219 Identities=21% Similarity=0.293 Sum_probs=176.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCC---CCCeeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~---~~~~~~G~i~i~g 904 (1206)
.++++|+++.+. .+.+|+||||++++||++||+||||||||||+++|+|.. .+.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 478899998763 246999999999999999999999999999999999952 2212479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 979 (1206)
.++.. ..+++.++|++|++.+++ .|+.||+.+....+. ....+...+.++++++.++|.+........ .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 87642 234567999999988776 699999987654331 112233455688999999986532111111 145
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 5899999999987 57788999999985 78
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999975
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=320.25 Aligned_cols=196 Identities=30% Similarity=0.574 Sum_probs=163.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC-eeEEEEEEcCcc
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYP 906 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 906 (1206)
.++|+||+|.|+.+ .+++.+|+++||+|++|+++||+||||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58999999999743 12457999999999999999999999999999999999986532 458999999987
Q ss_pred CCc--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 907 KKQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 907 ~~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
... ...++.++|++|++.+++.+||+||+.+.+... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567999999999999999999998753211 2222 3579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999998765 678777766643367889999999986 788775
Q ss_pred c
Q 000971 1064 G 1064 (1206)
Q Consensus 1064 g 1064 (1206)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=332.38 Aligned_cols=218 Identities=21% Similarity=0.267 Sum_probs=179.4
Q ss_pred CCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--C-CeeEEEEE
Q 000971 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNIT 901 (1206)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~ 901 (1206)
.+..+.++|+++.++ ...+|+|+|++|++||++||+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 345689999998874 2359999999999999999999999999999999999754 1 13579999
Q ss_pred EcCccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccc
Q 000971 902 ISGYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSL 972 (1206)
Q Consensus 902 i~g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~ 972 (1206)
++|.++.. ..+++.++|++|++.+++ .|++||+.+...... ..+.++.+++++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987531 234567999999988777 899999987653221 1233444567899999999853 23333
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEE
Q 000971 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELF 1052 (1206)
Q Consensus 973 ~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ 1052 (1206)
+..||||||||++||+||+.+|+||+|||||+|||+.++..+.+.|+++. ++.|||+++|++. ++.+.+|+++
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~ 226 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTA 226 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEE
Confidence 45799999999999999999999999999999999999999999999985 4789999999986 5778899999
Q ss_pred EEecCcEEEEEcCC
Q 000971 1053 LMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1053 ll~~gg~~~~~g~~ 1066 (1206)
+|++ |+++..|+.
T Consensus 227 ~l~~-G~i~~~g~~ 239 (260)
T PRK10744 227 FMYL-GELIEFGNT 239 (260)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 789998874
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=349.34 Aligned_cols=202 Identities=24% Similarity=0.295 Sum_probs=175.3
Q ss_pred ceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc---c----ccceEEEeecCCCC
Q 000971 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDIH 925 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~q~~~~ 925 (1206)
...+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++... . .++.+|||+|+..+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 34689999999999999999999999999999999998764 479999999876421 1 13469999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000971 926 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005 (1206)
Q Consensus 926 ~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LD 1005 (1206)
++.+||+||+.|...++. ...++.++.+.++++.++|.+..++.+ ..||||||||++|||||+.+|+|||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999998765432 234455667899999999998888774 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1006 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1006 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999875 4899999999987 57889999999985 789998875
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=324.61 Aligned_cols=200 Identities=29% Similarity=0.427 Sum_probs=167.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999999987 9999999998765332 3579999999889999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.++....+... .+....++.+++.+||++..++.++ .
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (213)
T cd03259 90 AENIAFGLKLRGVPK----------------------------------AEIRARVRELLELVGLEGLLNRYPH-----E 130 (213)
T ss_pred HHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhcChh-----h
Confidence 999998643221100 0011235668899999877776554 6
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++... +++|+.++|...++.++||+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL-GITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999876533 45566678888889999999999999999
Q ss_pred EEec
Q 000971 404 VYQG 407 (1206)
Q Consensus 404 v~~G 407 (1206)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=325.48 Aligned_cols=213 Identities=25% Similarity=0.364 Sum_probs=176.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++.. .....+|+|+|++|++|++++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 47899999887421 0113599999999999999999999999999999999998663 479999999875
Q ss_pred Cccc------c-cceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 000971 908 KQET------F-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1206)
Q Consensus 908 ~~~~------~-~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 980 (1206)
.... . ++.++|++|++.+++.+|+.||+.+....+. ....+..+++.++++.++|.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 2469999999988899999999987654321 223445567899999999988777663 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998765 899999999987 34 56999999985 67
Q ss_pred EEE
Q 000971 1060 EIY 1062 (1206)
Q Consensus 1060 ~~~ 1062 (1206)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 654
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=336.90 Aligned_cols=217 Identities=23% Similarity=0.334 Sum_probs=177.7
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.++... ...+.+|+||||+|++|++++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 67899998874210 0013599999999999999999999999999999999998664 4899999998753
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCC
Q 000971 909 Q-------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGV 978 (1206)
Q Consensus 909 ~-------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~ 978 (1206)
. ..+++.++|++|++ .+++ .||+||+.|..... ....++..+.++++++.++|.+ ..++. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 22456789999986 3444 69999998764332 1233444566889999999973 55555 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (280)
T PRK13649 222 KLVLSGKP 229 (280)
T ss_pred EEEEeCCH
Confidence 88888874
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=324.98 Aligned_cols=205 Identities=29% Similarity=0.380 Sum_probs=172.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1206)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999999887 999999998775321 1356999999998999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 90 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 130 (220)
T cd03265 90 GWENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLVK----- 130 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCChh-----
Confidence 9999998654322100 0112245678999999887776654
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.... +++|+.++|..+++..++|+|++|.+|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF-GMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999886532 4556668888889999999999999999
Q ss_pred EEEecChHHH
Q 000971 403 IVYQGPRELV 412 (1206)
Q Consensus 403 iv~~G~~~~~ 412 (1206)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=295.32 Aligned_cols=197 Identities=25% Similarity=0.376 Sum_probs=171.5
Q ss_pred CceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cccceEEEeecCCC
Q 000971 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TFARISGYCEQNDI 924 (1206)
Q Consensus 852 ~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~q~~~ 924 (1206)
+...||++|++.|++||-+||+|||||||||||-+|+|...+ .+|+|.+.|+++... ...+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 457899999999999999999999999999999999998774 489999999986431 13467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000971 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1004 (1206)
Q Consensus 925 ~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~L 1004 (1206)
+.|++|..||+.....++.... ........+.|+.+||.+..+.++ ..|||||+|||+||||++..|+|||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEec
Confidence 9999999999998888775322 223345788999999998888774 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 1005 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 1005 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
||||-+||..+...|.++|-.+.++ |.|.|++||||. +...|||.+-|.. |+++
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~ 225 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLV 225 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceec
Confidence 9999999999999999999988754 999999999986 6788999999986 6765
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=370.16 Aligned_cols=207 Identities=29% Similarity=0.420 Sum_probs=174.4
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1206)
.+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||++++..++ ++.++||+|++.+|. -|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gS 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GS 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhc-Cc
Confidence 5899999999999999999999999999999999999998 9999999999988776 478999999886664 59
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.++.. +.+.+..+.|+...+. . -.+..++..+||.||+.+.
T Consensus 563 I~eNi~l~~p-------------------------~~~~e~i~~A~~~ag~-----~---~fI~~lP~gy~t~v~E~G~- 608 (709)
T COG2274 563 IRENIALGNP-------------------------EATDEEIIEAAQLAGA-----H---EFIENLPMGYDTPVGEGGA- 608 (709)
T ss_pred HHHHHhcCCC-------------------------CCCHHHHHHHHHHhCc-----H---HHHHhcccccccccccCCC-
Confidence 9999998642 2222333333332221 1 1245688999999997665
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
+||||||||++|||||+.+|+||+||||||+||+.+...|.+.|.++. .++|+|+..|.+ .+.+.||+|+||++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl--~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRL--STIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccc--hHhhhccEEEEccCCc
Confidence 899999999999999999999999999999999999999999999875 356766655544 5788999999999999
Q ss_pred EEEecChHHHHH
Q 000971 403 IVYQGPRELVLE 414 (1206)
Q Consensus 403 iv~~G~~~~~~~ 414 (1206)
++.+|+++++++
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999876
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=334.85 Aligned_cols=214 Identities=28% Similarity=0.351 Sum_probs=179.4
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.+. +.+.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 57889988873 123599999999999999999999999999999999997663 4799999998753
Q ss_pred c-----ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 909 Q-----ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~-----~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
. ...++.++|++|++. .+...||.||+.|..... ....++..+.+.++++.++|.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 123567999999963 333479999998754321 2234455567889999999998888764 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|++. ++.+.||++++|++ |++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57788999999986 78999
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=339.47 Aligned_cols=221 Identities=18% Similarity=0.240 Sum_probs=181.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC-C-eeEEEEEEcCc
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG-G-YITGNITISGY 905 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~-~-~~~G~i~i~g~ 905 (1206)
.++++||++.+..+ .+...+|+||||+|++||++||+|+||||||||+++|+|...+ + +.+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 37889999887522 1125699999999999999999999999999999999997642 2 35899999998
Q ss_pred cCCcc---c----ccceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc---ccccc
Q 000971 906 PKKQE---T----FARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL---IQSLV 973 (1206)
Q Consensus 906 ~~~~~---~----~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~~ 973 (1206)
++... . .++.++||+|++ .+.|.+|+.+++........ ....++.++.+.++++.++|.+. .+..
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~- 150 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY- 150 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC-
Confidence 76431 1 123699999998 47888999988865543221 23445566789999999999753 3443
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEE
Q 000971 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELF 1052 (1206)
Q Consensus 974 g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ 1052 (1206)
+..|||||||||+||+||+.+|+|||+||||+|||+.++..|++.|+++.+ .|.|||++||+++ .+.+.+|+|+
T Consensus 151 ----p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~ 225 (326)
T PRK11022 151 ----PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKII 225 (326)
T ss_pred ----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999976 4999999999987 4678899999
Q ss_pred EEecCcEEEEEcCC
Q 000971 1053 LMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1053 ll~~gg~~~~~g~~ 1066 (1206)
+|.+ |+++..|+.
T Consensus 226 vm~~-G~ive~g~~ 238 (326)
T PRK11022 226 VMYA-GQVVETGKA 238 (326)
T ss_pred EEEC-CEEEEECCH
Confidence 9985 799999985
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=339.67 Aligned_cols=225 Identities=23% Similarity=0.255 Sum_probs=184.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.|+.+||++.+....... ...+...+|+||||+|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 478999998875321100 001135799999999999999999999999999999999998663 479999999876
Q ss_pred Ccc------cccceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCC
Q 000971 908 KQE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGV 978 (1206)
Q Consensus 908 ~~~------~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~ 978 (1206)
... .+++.+|||+|++ .+.|.+||.+++.+..... .....++.++.+.++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 431 2456799999997 5788999999987654332 12345556678999999999964 55665 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
..||||||||++|||||+.+|+|||+||||++||..++..|+++|+++.++ |.|||++||+++ .+.+.+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 999999999986 46678999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 231 G~ive~g~~ 239 (327)
T PRK11308 231 GRCVEKGTK 239 (327)
T ss_pred CEEEEECCH
Confidence 799999985
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=305.01 Aligned_cols=207 Identities=30% Similarity=0.428 Sum_probs=176.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc---ceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (1206)
+.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|+++|||.+++++.+. +.-+..+|+..+-+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45899999999999999999999999999999999999998 99999999999988764 4568999998776667
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+|-+.++..-.+.+.. ..+...+++..|...++.+.+.. ..
T Consensus 91 tv~eVV~mGr~p~~~g~~--------------------------------~~e~~~i~~~ala~~d~~~la~R-----~y 133 (259)
T COG4559 91 TVQEVVQMGRIPHRSGRE--------------------------------PEEDERIAAQALAATDLSGLAGR-----DY 133 (259)
T ss_pred EHHHHHHhcccccccCCC--------------------------------chhhHHHHHHHHHHcChhhhhcc-----ch
Confidence 999999998654322110 01223456778888888887753 34
Q ss_pred ccCChhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 322 RGISGGERKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~------~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
+.|||||||||.+||.|+. .+++||||||||.||......+++..|++++. + ..|+.++|+..-+..++|+|
T Consensus 134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhhee
Confidence 5799999999999999974 44689999999999999999999999999974 3 56666889999999999999
Q ss_pred EEEcCCeEEEecChHHHH
Q 000971 396 ILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1206)
++|.+||++..|++++++
T Consensus 212 vll~~Grv~a~g~p~~vl 229 (259)
T COG4559 212 VLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeCCeEeecCCHHHhc
Confidence 999999999999999876
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=325.94 Aligned_cols=213 Identities=26% Similarity=0.392 Sum_probs=181.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.+. .+.+|+|+|++++||++++|+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 35788888763 24699999999999999999999999999999999998764 4799999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ..++.+||++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.+ ..||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQ 137 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 32 124578999999998888999999987654331 223444557889999999998877763 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999998765 899999999986 57888999999985 788888863
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=332.34 Aligned_cols=217 Identities=27% Similarity=0.389 Sum_probs=179.7
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcc
Confidence 56788887763 24699999999999999999999999999999999997653 4799999998754
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
. ...++.++|++|++.+++.+||+||+.+....... ......+..+.+.++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 22345689999998777889999999875211000 00111233456889999999988777764 579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
||||++||++|+.+|++|+|||||+|||+.+...+++.|+++.++|.|||+++|+++ .+.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877999999999997 57789999999985 6889988
Q ss_pred CCC
Q 000971 1065 PLG 1067 (1206)
Q Consensus 1065 ~~~ 1067 (1206)
+..
T Consensus 220 ~~~ 222 (256)
T TIGR03873 220 PPR 222 (256)
T ss_pred CHH
Confidence 753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=317.33 Aligned_cols=190 Identities=57% Similarity=0.937 Sum_probs=162.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++.+ ..++.+|+|+|+++++|++++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47899999887521 012469999999999999999999999999999999999643224589999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
. ..+++.++|++|++.+++.+|++||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 4 334567999999998889999999998743110 49999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
|++||+||+.+|++|+|||||+|||+.++..+++.|+++++.|+|||+++|+++.++...+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887799999999998744678899999998657898865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=335.32 Aligned_cols=218 Identities=25% Similarity=0.387 Sum_probs=177.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-----ccceEEEecCCCC-CC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDN-HI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~-~~ 238 (1206)
+++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999987 999999999986532 1357999999863 44
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc--ccccccc
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE--VCADTMV 316 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 316 (1206)
..+||+||+.|+....+.. ..+....++++++.+||. +..|+.
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~- 141 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------------------------------EEEIENRVKRAMNIVGLDYEDYKDKS- 141 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhccCC-
Confidence 5689999999865322110 011223467789999996 455544
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
++.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. .+++|+.++|...++..+||+|+
T Consensus 142 ----~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 142 ----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 4579999999999999999999999999999999999999999999998653 35566668888889999999999
Q ss_pred EEcCCeEEEecChHHHHH---HHHhcCCCCCC
Q 000971 397 LLSDGQIVYQGPRELVLE---FFESMGFKCPK 425 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~f~~~G~~cp~ 425 (1206)
+|++|++++.|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 23345555543
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=332.56 Aligned_cols=208 Identities=25% Similarity=0.334 Sum_probs=174.9
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHD 235 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (1206)
..+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3467999999999999999999999999999999999999987 9999999998765322 24699999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccc
Q 000971 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1206)
Q Consensus 236 ~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1206)
.+++.+||+||+.+.....+... .+....++.+++.+||.+..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR----------------------------------AEREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCC
Confidence 89999999999998654322100 00112356788999998877766
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 316 vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
++ .|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++++.. +.+|+.++|..+++.+++|+|
T Consensus 158 ~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiii~tH~~~~~~~~~d~v 231 (269)
T cd03294 158 PD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL-QKTIVFITHDLDEALRLGDRI 231 (269)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEE
Confidence 54 699999999999999999999999999999999999999999999886533 445556778888899999999
Q ss_pred EEEcCCeEEEecChHHHH
Q 000971 396 ILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1206)
++|++|++++.|+++++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=327.19 Aligned_cols=211 Identities=25% Similarity=0.319 Sum_probs=174.8
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.++ ++.+|+|+||++++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 35788887763 24699999999999999999999999999999999998763 4799999998754
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC-CccccccccCCCCCCCCCH
Q 000971 909 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-LKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 909 ~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ..++.++|++|++.+++.+|+.||+.+....+. .. ..+.++++++.++ +.+..++. +..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 21 124568999999999999999999987654321 11 1234577788876 55555655 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++...+|++++|.+ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998874 899999999986 57778999999985 78999
Q ss_pred EcCCC
Q 000971 1063 VGPLG 1067 (1206)
Q Consensus 1063 ~g~~~ 1067 (1206)
.|+..
T Consensus 213 ~~~~~ 217 (230)
T TIGR03410 213 SGAGD 217 (230)
T ss_pred ECCHH
Confidence 88853
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=344.82 Aligned_cols=204 Identities=21% Similarity=0.303 Sum_probs=176.7
Q ss_pred CceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc----cCCc---cc---c-cceEEEee
Q 000971 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY----PKKQ---ET---F-ARISGYCE 920 (1206)
Q Consensus 852 ~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~----~~~~---~~---~-~~~~gyv~ 920 (1206)
+...+|+||||+|++||+++|||+||||||||+++|+|...+ .+|+|.++|. ++.. .. + ++.++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 456799999999999999999999999999999999998764 4799999995 2211 11 1 24699999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCc
Q 000971 921 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1000 (1206)
Q Consensus 921 q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~ 1000 (1206)
|++.++|.+||+||+.|+...+ ..+.+++++.+.++++.+||.+..+..+ ..||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999875443 2345566678899999999998888774 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 1001 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1001 iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999765 999999999987 57899999999985 7999999863
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=321.85 Aligned_cols=209 Identities=22% Similarity=0.306 Sum_probs=174.9
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
.++||++.++ .+++|+|+++++|++++|+||||||||||+++|+|...+ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEccc
Confidence 5778877663 145799999999999999999999999999999998764 47999999987542
Q ss_pred -ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHH
Q 000971 910 -ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1206)
Q Consensus 910 -~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqr 988 (1206)
...++.++|++|++.+++.+|+.||+.+...... . .....+..++++++.++|.+..++.+ ..||+|||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHH
Confidence 2345679999999999999999999986532211 1 11223456889999999988777763 5799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 989 l~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
++||++|+.+|++|+|||||+|||..++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++..|+
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 99999999999999999999999999999999999998765 899999999986 56788999999985 78888775
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=331.36 Aligned_cols=216 Identities=23% Similarity=0.275 Sum_probs=178.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC---CeeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 904 (1206)
.+.++||++.++ .+.+|+|+|++|++|++++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 589999998874 24699999999999999999999999999999999997643 13579999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc----cccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL----IQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~~g~ 975 (1206)
.++.. ..+++.+||++|++.+++. ||.||+.|....+.. .....+..+.++++++.++|.+. .+..
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87632 2345678999999887774 999999886543311 11223345568899999999642 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|||+++|+++ .+...+|++++|+
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 789999999987 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 5 789998874
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=330.24 Aligned_cols=224 Identities=22% Similarity=0.263 Sum_probs=181.6
Q ss_pred CCCCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC---CeeEEE
Q 000971 823 PFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGN 899 (1206)
Q Consensus 823 ~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~ 899 (1206)
|..+..+.++|++++++ .+.+|+|||+++++||++||+|||||||||||++|+|...+ .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 33445689999998874 24699999999999999999999999999999999997642 135899
Q ss_pred EEEcCccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccC
Q 000971 900 ITISGYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974 (1206)
Q Consensus 900 i~i~g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g 974 (1206)
|.++|.+... ...++.++|++|++.+++ .||+||+.+..... .....+..+..+.++++.++|.+..+....
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987632 123567999999988877 69999998864321 112334455678899999999643222222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEE
Q 000971 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1206)
Q Consensus 975 ~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll 1054 (1206)
. .+..||+|||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. ++.|||+++|+++ ++.+.||++++|
T Consensus 159 ~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l 235 (267)
T PRK14237 159 K-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFF 235 (267)
T ss_pred C-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEE
Confidence 2 246899999999999999999999999999999999999999999999985 4799999999987 578899999999
Q ss_pred ecCcEEEEEcCC
Q 000971 1055 KRGGQEIYVGPL 1066 (1206)
Q Consensus 1055 ~~gg~~~~~g~~ 1066 (1206)
++ |++++.|+.
T Consensus 236 ~~-G~i~~~g~~ 246 (267)
T PRK14237 236 YL-GDLIEYDKT 246 (267)
T ss_pred EC-CEEEEeCCH
Confidence 85 799999885
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=332.87 Aligned_cols=215 Identities=23% Similarity=0.319 Sum_probs=180.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++. +.+.+|+|||+++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 4889999987731 124699999999999999999999999999999999998763 479999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ..+++.+||++|++. .++.+||+||+.+..... ....++....+.++++.++|.+..++.+ ..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567999999974 566789999998764322 1233445567899999999988877764 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++ ..+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 599999999987 34 47999999985 78888
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=363.48 Aligned_cols=221 Identities=21% Similarity=0.293 Sum_probs=186.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-++++|++++++ ++.+|+||||+|++|+++||+||||||||||+++|+|...+++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378999998873 2469999999999999999999999999999999999866433589999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
... ..++.+|||+|++.+++.+||+||+.|....+.....+.++..+.++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 432 124569999999988899999999988654321111223344567899999999988777764 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
|||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|++. .+...+|++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999878999999999987 57788999999985 789999
Q ss_pred cCCCc
Q 000971 1064 GPLGR 1068 (1206)
Q Consensus 1064 g~~~~ 1068 (1206)
|+..+
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 98753
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=327.43 Aligned_cols=198 Identities=24% Similarity=0.378 Sum_probs=167.6
Q ss_pred eecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000971 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 936 (1206)
Q Consensus 857 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 936 (1206)
|+|+||+|++|++++|+||||||||||+++|+|...+ .+|+|.++|.+..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999998763 4899999998764322 12489999999999999999998
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000971 937 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016 (1206)
Q Consensus 937 ~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~ 1016 (1206)
+......+ ....++.++.+.++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 2333444566889999999988777764 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1017 AIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1017 ~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998765 899999999987 57888999999985 788887764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=326.95 Aligned_cols=209 Identities=28% Similarity=0.392 Sum_probs=172.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 45999999999999999999999999999999999999887 9999999998765433 3579999999989999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+....+...+. + ..+....++.+++.+||.+..++.++ .
T Consensus 92 ~e~l~~~~~~~~~~~~~-------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (239)
T cd03296 92 FDNVAFGLRVKPRSERP-------------------P-----------EAEIRAKVHELLKLVQLDWLADRYPA-----Q 136 (239)
T ss_pred HHHHhhhhhhccccccC-------------------C-----------HHHHHHHHHHHHHHcCChhhhhcChh-----h
Confidence 99999865432110000 0 00111235678899999877665554 6
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|++++...+ .+|+.++|...++..++|+|++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH-VTTVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 999999999999999999999999999999999999999999998865334 4555577777888999999999999999
Q ss_pred EEecChHHH
Q 000971 404 VYQGPRELV 412 (1206)
Q Consensus 404 v~~G~~~~~ 412 (1206)
++.|+++++
T Consensus 216 ~~~~~~~~~ 224 (239)
T cd03296 216 EQVGTPDEV 224 (239)
T ss_pred EEecCHHHH
Confidence 999998865
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=338.65 Aligned_cols=224 Identities=20% Similarity=0.288 Sum_probs=182.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC-eeEEEEEEcCcc
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYP 906 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 906 (1206)
.+.++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 48899999877532 12356999999999999999999999999999999999976542 237999999987
Q ss_pred CCcc---c---cc-ceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCC
Q 000971 907 KKQE---T---FA-RISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 977 (1206)
Q Consensus 907 ~~~~---~---~~-~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~ 977 (1206)
+... . ++ +.++||+|++ .+.|.+|+.+++.+...... ....++..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 6431 1 12 4699999998 57889999999876544332 234555567789999999997533221 1 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+..||||||||++||+||+.+|+|||+||||+|||+.++..|++.|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999765 999999999986 46678999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 799999985
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=332.05 Aligned_cols=219 Identities=26% Similarity=0.360 Sum_probs=178.8
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC------eeEEEEEE
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG------YITGNITI 902 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~------~~~G~i~i 902 (1206)
++++|+++++. ++.+|+||||+|++|+++||+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 57888887763 246999999999999999999999999999999999976532 12799999
Q ss_pred cCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcC-CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCC
Q 000971 903 SGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL-PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1206)
Q Consensus 903 ~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~ 978 (1206)
+|.+... ..+++.++|++|++..++.+||+||+.+...... ......++.++.++++++.++|.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987532 2345568999999876667999999987532111 00111123445688999999998877665 3
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhc
Q 000971 979 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAF 1048 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~---------~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~ 1048 (1206)
..||||||||++||++|+ .+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|+++ ++...+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999998776 899999999987 577889
Q ss_pred CeEEEEecCcEEEEEcCCC
Q 000971 1049 DELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1049 d~v~ll~~gg~~~~~g~~~ 1067 (1206)
|++++|++ |++++.|+..
T Consensus 223 d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CEEEEEEC-CeEEEecCHH
Confidence 99999985 7899998853
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=332.05 Aligned_cols=216 Identities=23% Similarity=0.286 Sum_probs=181.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4889999988741 113589999999999999999999999999999999998763 479999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ..+++.++|++|++. +++..|+.+|+.|..... ....++..+.++++++.+++.+..+.. +..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234567999999974 677789999998864322 223444456788999999998877766 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|++. ++.. +|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998765 899999999987 4554 999999985 79999
Q ss_pred EcCCC
Q 000971 1063 VGPLG 1067 (1206)
Q Consensus 1063 ~g~~~ 1067 (1206)
.|+..
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 98853
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=334.31 Aligned_cols=219 Identities=20% Similarity=0.274 Sum_probs=180.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-+.++|+++.++... ....+.+|+||||+|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEec
Confidence 378999999875210 00124699999999999999999999999999999999998763 479999999876
Q ss_pred Cc----ccccceEEEeecCCCC-CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 908 KQ----ETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 908 ~~----~~~~~~~gyv~q~~~~-~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
.. ...++.+||++|++.. +...||.|++.|..... .....+.++.++++++.+||.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 2245679999999742 33468999998875432 2334555667899999999998888774 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 999999999987 454 4999999986 7899
Q ss_pred EEcCC
Q 000971 1062 YVGPL 1066 (1206)
Q Consensus 1062 ~~g~~ 1066 (1206)
+.|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 99875
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=334.69 Aligned_cols=217 Identities=24% Similarity=0.304 Sum_probs=181.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCe-eEEEEEEcCcc
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-ITGNITISGYP 906 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~-~~G~i~i~g~~ 906 (1206)
.++++|+++.++. ..+.+|++||++|++||++||+||||||||||+++|+|...+.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4789999988741 12359999999999999999999999999999999999765321 13899999987
Q ss_pred CCc---ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 907 KKQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
... ...++.+||++|++. .++..||+||+.|....+ ..+.++.++.++++++.++|.+..++.+ ..||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 643 223567999999974 566789999998764322 2344555667899999999998877763 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ .+ ..+|++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999987 34 57999999985 7999
Q ss_pred EEcCC
Q 000971 1062 YVGPL 1066 (1206)
Q Consensus 1062 ~~g~~ 1066 (1206)
+.|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99875
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=338.00 Aligned_cols=206 Identities=27% Similarity=0.385 Sum_probs=174.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1206)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 45999999999999999999999999999999999999987 999999999875322 2357999999998999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.+.....+... .+....++.+++.+||.+..++.++
T Consensus 94 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~l~~~~~~~~~----- 134 (303)
T TIGR01288 94 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADVRVA----- 134 (303)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCchh-----
Confidence 9999987543321100 0011234567899999988877665
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. . +++|+.++|..+++.++||+|++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 3 4556668888889999999999999999
Q ss_pred EEEecChHHHHH
Q 000971 403 IVYQGPRELVLE 414 (1206)
Q Consensus 403 iv~~G~~~~~~~ 414 (1206)
+++.|+++++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=326.57 Aligned_cols=214 Identities=25% Similarity=0.378 Sum_probs=173.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 45999999999999999999999999999999999999887 9999999998865442 2459999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.+......... .... ....+ ..+....++.+++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~~------~~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLLA------RARRE-----------EREARERAEELLERVGLADLADRPA---- 141 (236)
T ss_pred CCHHHHHHHHHhhccccc-------cccc------ccccc-----------HHHHHHHHHHHHHHcCccchhhCCh----
Confidence 999999998754321100 0000 00000 0011234677899999987666554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
+.|||||||||+||++|+.+|++++|||||+|||..+...+.+.|++++. .+ .+|+.++|+.+++.++||+|++|++
T Consensus 142 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 142 -GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RG-ITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEeC
Confidence 47999999999999999999999999999999999999999999998765 44 4556678888899999999999999
Q ss_pred CeEEEecChHHH
Q 000971 401 GQIVYQGPRELV 412 (1206)
Q Consensus 401 G~iv~~G~~~~~ 412 (1206)
|++++.|+++++
T Consensus 219 G~i~~~~~~~~~ 230 (236)
T cd03219 219 GRVIAEGTPDEV 230 (236)
T ss_pred CEEEeecCHHHh
Confidence 999999998875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=320.87 Aligned_cols=200 Identities=31% Similarity=0.418 Sum_probs=168.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 35999999999999999999999999999999999999887 9999999998764432 3579999999988999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.+..+..+... .+....++.+++.+||++..+..++ .
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (213)
T cd03301 90 YDNIAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKPK-----Q 130 (213)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCChh-----h
Confidence 999988654321100 0112235678899999887776554 6
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++...+ .+|+.++|..+++.+++|+|++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG-TTTIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865334 4555577888889999999999999999
Q ss_pred EEec
Q 000971 404 VYQG 407 (1206)
Q Consensus 404 v~~G 407 (1206)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=327.42 Aligned_cols=219 Identities=21% Similarity=0.269 Sum_probs=176.7
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC-CeeEEEEEEcCccC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITISGYPK 907 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~ 907 (1206)
+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56788888774 24699999999999999999999999999999999997532 24579999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
.. ..+++.++|++|++.+++ .|++||+.+....+... ...+..+++++++++.++|.+........ ....||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQ-NALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhcC-CcccCCHH
Confidence 43 234567999999988887 69999998865433110 11233445688999999995432111111 14579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999987 57788999999985 7999988
Q ss_pred CC
Q 000971 1065 PL 1066 (1206)
Q Consensus 1065 ~~ 1066 (1206)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 74
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=333.45 Aligned_cols=205 Identities=21% Similarity=0.248 Sum_probs=153.5
Q ss_pred CCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcC
Q 000971 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 904 (1206)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g 904 (1206)
.|..+.+.+|++.++ |. .-+++.+++..+..-+..+++|+||+||||+++++.|..++ ..|-+-+.+
T Consensus 359 ~~p~l~i~~V~f~y~-p~----------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYT-PS----------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCC-Cc----------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc
Confidence 445688999988775 11 11689999999999999999999999999999999986552 356665554
Q ss_pred ccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCCCCH
Q 000971 905 YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSGLST 983 (1206)
Q Consensus 905 ~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~~~LSg 983 (1206)
+..++|-.|...-+-.+.|.+- .+-...+ |. .. ++.+++-+..+||..- +... +.+|||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~-pG-~~----~ee~r~hl~~~Gl~g~la~~s-----i~~LSG 485 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF-PG-KT----EEEIRRHLGSFGLSGELALQS-----IASLSG 485 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHHH-HHHHHhC-CC-CC----HHHHHHHHHhcCCCchhhhcc-----ccccCC
Confidence 4568998887554433444332 2222222 21 12 2346778999999752 3222 467999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
|||-||++|.....+|.+|+|||||+.||..+-..+-+.|++. +..|||++|+-+. +-..|+.+.+..+|.-.-..
T Consensus 486 GQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ie 561 (582)
T KOG0062|consen 486 GQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIE 561 (582)
T ss_pred cchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeee
Confidence 9999999999999999999999999999999999999888875 4589999999763 66789999999875444455
Q ss_pred cCC
Q 000971 1064 GPL 1066 (1206)
Q Consensus 1064 g~~ 1066 (1206)
|..
T Consensus 562 g~~ 564 (582)
T KOG0062|consen 562 GGI 564 (582)
T ss_pred ccH
Confidence 553
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=338.99 Aligned_cols=223 Identities=17% Similarity=0.203 Sum_probs=179.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC--CeeEEEEEEcCc
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--GYITGNITISGY 905 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~ 905 (1206)
-+.++||++.+..+ .+...+|+||||+|++||++||+|+||||||||+++|+|...+ .+.+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 37889999887532 1235799999999999999999999999999999999997642 235799999998
Q ss_pred cCCcc---c----ccceEEEeecCCC--CCCCCCHHHHHHHhhhhcCCCC---CCHHHHHHHHHHHHHHcCCccc---cc
Q 000971 906 PKKQE---T----FARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPE---VDSETRKMFIEEVMELVELKPL---IQ 970 (1206)
Q Consensus 906 ~~~~~---~----~~~~~gyv~q~~~--~~~~~Tv~e~l~~~a~lr~~~~---~~~~~~~~~v~~~l~~l~L~~~---~~ 970 (1206)
++... . .++.++||+|++. +.|.+||.+++.+......... ....+.++.+.++|+.++|.+. .+
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 75321 1 1246999999975 5788999999976422110000 1123345678999999999753 34
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcC
Q 000971 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFD 1049 (1206)
Q Consensus 971 ~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d 1049 (1206)
+. +..|||||||||+||+||+.+|+||||||||+|||+.++..|++.|+++.++ |.|||++||+++ .+.+.+|
T Consensus 154 ~~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~d 227 (330)
T PRK15093 154 SF-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWAD 227 (330)
T ss_pred CC-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCC
Confidence 44 4579999999999999999999999999999999999999999999999875 999999999986 5778899
Q ss_pred eEEEEecCcEEEEEcCC
Q 000971 1050 ELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1050 ~v~ll~~gg~~~~~g~~ 1066 (1206)
++++|.+ |++++.|+.
T Consensus 228 ri~vm~~-G~ive~g~~ 243 (330)
T PRK15093 228 KINVLYC-GQTVETAPS 243 (330)
T ss_pred EEEEEEC-CEEEEECCH
Confidence 9999985 799999985
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=325.16 Aligned_cols=212 Identities=25% Similarity=0.375 Sum_probs=180.6
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
+++|+++.++ .+.+|+|+|+++.+||+++|+||||||||||+++|+|...+ ..|+|.++|.++..
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 5788887764 23699999999999999999999999999999999998663 47999999987643
Q ss_pred c-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHH
Q 000971 910 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1206)
Q Consensus 910 ~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqr 988 (1206)
. ..++.++|++|++.+++..|+.||+.+....+. .......+.++++++.+++.+..++.+ ..||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 234579999999988889999999987654331 223344566889999999988777764 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 989 l~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998775 899999999986 57888999999985 789998885
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=335.72 Aligned_cols=219 Identities=20% Similarity=0.310 Sum_probs=178.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|++++++... .....+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 588999998874210 0013599999999999999999999999999999999998763 479999999765
Q ss_pred C--------cccccceEEEeecCCCC-CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCC
Q 000971 908 K--------QETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPG 977 (1206)
Q Consensus 908 ~--------~~~~~~~~gyv~q~~~~-~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~ 977 (1206)
. ...+++.++|++|++.. ....|++||+.|..... ....++..+.++++++.++|. +..++.
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 2 12345679999999742 22369999998864322 123344456688999999994 566665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999998764 899999999987 57889999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 789888874
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=325.27 Aligned_cols=205 Identities=28% Similarity=0.377 Sum_probs=172.5
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHIG 239 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~~ 239 (1206)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999987 9999999998765421 357999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
.+||+||+.+.....+... .+....++.+++.+||++..+..+
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------------------------------AEIEERVLELLELVGLEDKADAYP--- 138 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhcCh---
Confidence 9999999988654321100 001123567889999987776554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
..|||||||||+||++++.+|++++|||||+|||+.+...+.+.|++++... +++|+.++|..+++.+++|++++|+
T Consensus 139 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 139 --AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4799999999999999999999999999999999999999999999876533 4555667777888899999999999
Q ss_pred CCeEEEecChHHHH
Q 000971 400 DGQIVYQGPRELVL 413 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1206)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=330.80 Aligned_cols=215 Identities=21% Similarity=0.258 Sum_probs=176.4
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC---CeeEEEEEEc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITIS 903 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~ 903 (1206)
..+.++||++.++ .+.+|+|+||+|++||++||+||||||||||+++|+|...+ .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3589999998874 24699999999999999999999999999999999997542 1357999999
Q ss_pred CccCC-----cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccC
Q 000971 904 GYPKK-----QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVG 974 (1206)
Q Consensus 904 g~~~~-----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g 974 (1206)
|.++. ...+++.++|++|++.+++ .||+||+.+.+..+. .. ...++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98653 1234567999999998887 499999988754331 11 223455778899888743 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEE
Q 000971 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1206)
Q Consensus 975 ~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll 1054 (1206)
+..||+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++...||++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999854 799999999987 688899999999
Q ss_pred ec----------CcEEEEEcCC
Q 000971 1055 KR----------GGQEIYVGPL 1066 (1206)
Q Consensus 1055 ~~----------gg~~~~~g~~ 1066 (1206)
++ +|++++.|+.
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred eccccccccccccceEEEeCCH
Confidence 85 3678998875
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=326.58 Aligned_cols=220 Identities=20% Similarity=0.283 Sum_probs=178.8
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--CC-eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 904 (1206)
.+.++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478999998874 2359999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 979 (1206)
.++.. ..+++.++|++|+..+++.+|++||+.+...... .....+.++.++++++.+++.......... .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 87532 2346679999999998999999999987543221 122333445688999999986422111111 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++.+.||++++|.+ |+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999975 689999999987 57789999999985 79
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=324.98 Aligned_cols=211 Identities=21% Similarity=0.295 Sum_probs=177.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++.++. + ..||||++++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecC
Confidence 578899988741 1 2389999999999999999999999999999998663 4799999998754
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..++.++++++.++|.+..++.+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 32 12456899999999999999999998753211 111 2234566899999999998888774 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999987 57788999999985 789998875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=326.36 Aligned_cols=209 Identities=26% Similarity=0.346 Sum_probs=175.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEh
Confidence 478899998763 23599999999999999999999999999999999997653 479999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCH
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSg 983 (1206)
.. ...++.++|++|++.+++ .||+||+.+....+ . .....+.++++.++|. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988776 69999998753322 1 1124578899999996 455554 457999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 999999999987 57788999999985 78888
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=346.92 Aligned_cols=213 Identities=26% Similarity=0.432 Sum_probs=181.5
Q ss_pred CCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcC
Q 000971 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 904 (1206)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g 904 (1206)
.+..+..+|++|.++. ++++++|+|+++++|+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 3456777799998852 23799999999999999999999999999999999998874 489999999
Q ss_pred ccCC---cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccc------ccCC
Q 000971 905 YPKK---QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS------LVGL 975 (1206)
Q Consensus 905 ~~~~---~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~------~~g~ 975 (1206)
.+.. ...+++.++||+|++.+++ -|++||+.++. + +.+ ++.+.++++..+|.+..+. .+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~----~-~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR----P-DAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC----C-cCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 4568899999999998876 69999998752 1 122 3458899999999877665 3443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+.++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4578999999999999999999999999999999999999999999999986 599999999975 467789999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 5 799999875
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=324.10 Aligned_cols=204 Identities=23% Similarity=0.379 Sum_probs=171.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 46999999999999999999999999999999999999987 9999999998765432 2469999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.+.....+.. . .+....++.+++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 131 (232)
T cd03218 90 LTVEENILAVLEIRGLS-K---------------------------------KEREEKLEELLEEFHITHLRKSKA---- 131 (232)
T ss_pred CcHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCChhhhhCCh----
Confidence 99999998864322110 0 011223567889999987776655
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
+.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.. . +++|+.++|..+++.+++|+|++|++
T Consensus 132 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 132 -SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-R-GIGVLITDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998764 3 44566677888899999999999999
Q ss_pred CeEEEecChHHH
Q 000971 401 GQIVYQGPRELV 412 (1206)
Q Consensus 401 G~iv~~G~~~~~ 412 (1206)
|++++.|+.+++
T Consensus 209 G~i~~~~~~~~~ 220 (232)
T cd03218 209 GKVLAEGTPEEI 220 (232)
T ss_pred CeEEEEeCHHHh
Confidence 999999998765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=338.42 Aligned_cols=229 Identities=24% Similarity=0.372 Sum_probs=186.4
Q ss_pred cCCCCCcceEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCCCcccceEeeceeeeEeCCeEEEEEcCCCC
Q 000971 110 VGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPAS 189 (1206)
Q Consensus 110 ~~~~~p~~~v~f~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~Gs 189 (1206)
..+..|.=.++|+|++.+-. ++++||+++||+|++|+-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 35556666799999887731 224599999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHH
Q 000971 190 GKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTEL 266 (1206)
Q Consensus 190 GKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~ 266 (1206)
||||+|++|.+.++ . +|+|.+||+++.+... |+.+|||||+..+| +-||.+||.++..- .-++.+.+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~s----as~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGNPS----ASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCCCC----cCHHHHHHH
Confidence 99999999999998 4 9999999999987765 47899999976555 45999999997431 223444445
Q ss_pred HHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHHhcCCccce
Q 000971 267 ARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346 (1206)
Q Consensus 267 ~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vll 346 (1206)
|++.. ..|. +..|++.++|.||+++. -|||||||||++|||++.+|+|++
T Consensus 461 ~k~a~--------------------------~hd~---i~~l~~GY~T~VGerG~-~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRAG--------------------------LHDV---ISRLPDGYQTLVGERGL-MLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHcC--------------------------cHHH---HHhccccchhhHhhccc-ccccchHHHHHHHHHHhcCCCeEE
Confidence 54321 1111 34588899999999876 599999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEecChHHHHH
Q 000971 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 347 lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~ 414 (1206)
+|||||.||+.|..++++.+... ..++|+|+. .|.. .+...||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~I-vH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV--MSGRTVIMI-VHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh--cCCCeEEEE-Eecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999873 345666664 4543 4677899999999999999999999875
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=323.59 Aligned_cols=211 Identities=26% Similarity=0.380 Sum_probs=178.7
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
.++|+++.+. . ++|+|+|++|+|||++||+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~~ 65 (235)
T cd03299 2 KVENLSKDWK-------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITN 65 (235)
T ss_pred eeEeEEEEeC-------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcCc
Confidence 5677777653 1 279999999999999999999999999999999998663 47999999987643
Q ss_pred c-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHH
Q 000971 910 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1206)
Q Consensus 910 ~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqr 988 (1206)
. ..++.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.++|.+..++.+ ..||||||||
T Consensus 66 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 137 (235)
T cd03299 66 LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQR 137 (235)
T ss_pred CChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHH
Confidence 1 12457999999999998999999998764332 1233444556789999999988877764 5799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 989 l~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
++||+||+.+|++|+|||||+|||+.++..+.+.|++++.+ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 138 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998765 999999999986 57788999999985 789988874
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=324.73 Aligned_cols=201 Identities=29% Similarity=0.416 Sum_probs=169.5
Q ss_pred CceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc--ccccceEEEee-cCCCCCCC
Q 000971 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPF 928 (1206)
Q Consensus 852 ~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-q~~~~~~~ 928 (1206)
+.+.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++ |.+.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 346799999999999999999999999999999999998663 47999999976432 23456789997 55667788
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000971 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008 (1206)
Q Consensus 929 ~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPT 1008 (1206)
+|++|++.+...++ ....++..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998765443 1233444556888999999988877764 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 1009 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 1009 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998765 899999999987 57788999999985 6887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=305.12 Aligned_cols=210 Identities=23% Similarity=0.373 Sum_probs=181.9
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHI 238 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1206)
++++++++||+.+++||+++++|||||||||.+.++.|+..|+ +|+|.++|.+++.++.. .-++|+||++..|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4578999999999999999999999999999999999999998 99999999999987764 3589999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
-.|||+|||.-..+.+.... ...+.+...+.+|+.|.|.|+++..-.
T Consensus 92 r~LtV~dNi~~vlE~~~~d~--------------------------------~~~~~~~~l~~LL~ef~i~hlr~~~a~- 138 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDL--------------------------------KKAERKEELDALLEEFHITHLRDSKAY- 138 (243)
T ss_pred hcCcHHHHHHHHHhhhhcch--------------------------------hHHHHHHHHHHHHHHhchHHHhcCccc-
Confidence 99999999987665432100 001223457889999999999986543
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
.||||||+|+.|||||+.+|+.++||||++|+||-+..+|.+.++.+.. .+.-|+..-|.-.|+.+.||+.+++
T Consensus 139 ----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYIi 212 (243)
T COG1137 139 ----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYII 212 (243)
T ss_pred ----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEEE
Confidence 6999999999999999999999999999999999999999999998864 3555665778888999999999999
Q ss_pred cCCeEEEecChHHHHH
Q 000971 399 SDGQIVYQGPRELVLE 414 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1206)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999998863
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=320.92 Aligned_cols=200 Identities=29% Similarity=0.379 Sum_probs=168.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999887 9999999998763 245799999999889999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
||+.++....+... .+....++.+++.+||++..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99998654322100 001123567889999987766655 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc--CCe
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~--~G~ 402 (1206)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++....+ ++|+.++|..+++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG-KTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 99999999999999999999999999999999999999999998754334 455557777888899999999999 799
Q ss_pred EEEecCh
Q 000971 403 IVYQGPR 409 (1206)
Q Consensus 403 iv~~G~~ 409 (1206)
+++.++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=343.09 Aligned_cols=207 Identities=24% Similarity=0.324 Sum_probs=176.0
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDN 236 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (1206)
...+|+|+|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|+..
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 346899999999999999999999999999999999999987 9999999999875432 246999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1206)
+++.+||+||+.|+....+... .+....++++++.+||++..+..+
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCc
Confidence 9999999999999765432110 011123567899999987776554
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
+.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.... +++|+.++|..+++.+++|+|+
T Consensus 163 -----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~-g~TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 163 -----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH-QRTIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHC-CCeEEEEECCHHHHHHhCCEEE
Confidence 4799999999999999999999999999999999999999999999876533 4556667888899999999999
Q ss_pred EEcCCeEEEecChHHHH
Q 000971 397 LLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1206)
+|++|++++.|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999988764
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=340.55 Aligned_cols=211 Identities=27% Similarity=0.435 Sum_probs=179.4
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
+..+.|+||+++|. +++++|+||||+|++||.+||+|+|||||||++++|.+... .+|+|+|||+
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 45699999999985 23459999999999999999999999999999999998765 3799999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------cCC
Q 000971 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGL 975 (1206)
Q Consensus 906 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------~g~ 975 (1206)
+++. ..+|+.+|||||+..++. -||.+|+.|+. .+.+. ++|-++.+..++.+...++ +|+
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASD----EEVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCH----HHHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 8654 567889999999988775 69999999873 23333 3477788888887654444 666
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
.| ..|||||||||+||||++.+|+|+++|||||.||..+.+.+++.+++. ..|+|+|++.|+. ++...||+|++|+
T Consensus 484 rG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLD 559 (591)
T ss_pred cc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEE
Confidence 54 469999999999999999999999999999999999999999999984 4589999999996 4788999999999
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |++...|+.
T Consensus 560 n-G~v~e~gth 569 (591)
T KOG0057|consen 560 N-GTVKEYGTH 569 (591)
T ss_pred C-CeeEEeccH
Confidence 6 688888885
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=335.31 Aligned_cols=205 Identities=27% Similarity=0.385 Sum_probs=176.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc--cceEEEecCCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (1206)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 9999999998764322 357999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|.||+.|.+++.+... .+....++.+++.+||++..++.++
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 132 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG----- 132 (301)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----
Confidence 9999998765432110 0112235678999999988877654
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||+||+++|++++|||||+|||+.+...+.+.|+++. .+ ++|+.++|..+++.++||+|++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiii~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KD-KTIILSTHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--CC-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999874 24 566668888899999999999999999
Q ss_pred EEEecChHHHHH
Q 000971 403 IVYQGPRELVLE 414 (1206)
Q Consensus 403 iv~~G~~~~~~~ 414 (1206)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=325.74 Aligned_cols=215 Identities=21% Similarity=0.246 Sum_probs=177.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 904 (1206)
-+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 478899988763 246999999999999999999999999999999999975421 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 975 (1206)
.++.. ...++.+||++|++.+++ .|++||+.|...... ....++..++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 123567999999998887 899999988654321 1123344556888999998853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||+|||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++.+.+|++++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999876 699999999986 5788899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 5 789999885
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=335.28 Aligned_cols=222 Identities=19% Similarity=0.235 Sum_probs=180.3
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC---CeeEEEEEEc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITIS 903 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~ 903 (1206)
..+.|+|+++.+.. +.+.+|+||||+|++||++||+|||||||||||++|+|.... .+.+|+|.+|
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 36899999988841 124599999999999999999999999999999999997532 2347999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCC
Q 000971 904 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1206)
Q Consensus 904 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~ 978 (1206)
|.++.. ...++.++||+|++.+++ .|++||+.|..... ...+.+..++.++++++.++|.+..+..++.. +
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--GINDRKILEKIVEKSLKSAALWDEVKDDLDKA-G 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc--CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-c
Confidence 998642 234667999999998775 79999999864321 11112223445788899999865433344433 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999875 799999999986 46778999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
+++..|+.
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 99999986
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=321.92 Aligned_cols=203 Identities=29% Similarity=0.411 Sum_probs=171.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1206)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 46999999999999999999999999999999999999987 999999999875422 2356999999998898999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.+..+..+... .+....++.+++.+||.+..++.++
T Consensus 92 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (220)
T cd03263 92 VREHLRFYARLKGLPK----------------------------------SEIKEEVELLLRVLGLTDKANKRAR----- 132 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhChhh-----
Confidence 9999998654332100 0011235678889999887776654
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|++++. + .+|+.++|..+++.+++|+|++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998753 3 556667788888889999999999999
Q ss_pred EEEecChHHH
Q 000971 403 IVYQGPRELV 412 (1206)
Q Consensus 403 iv~~G~~~~~ 412 (1206)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988754
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=318.62 Aligned_cols=189 Identities=23% Similarity=0.354 Sum_probs=162.3
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC---c----ccccceEEEeecCCCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK---Q----ETFARISGYCEQNDIHS 926 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~q~~~~~ 926 (1206)
+.+|+||||++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 4699999999999999999999999999999999998763 4799999998742 1 12356799999999988
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000971 927 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1006 (1206)
Q Consensus 927 ~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDE 1006 (1206)
+.+|++||+.+....+ .....+..+.++++++.++|.+..++.+ ..||+|||||++||+||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8999999998865432 2233445567899999999988777764 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEE
Q 000971 1007 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1206)
Q Consensus 1007 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll 1054 (1206)
||+|||+.+...+.+.|+++.++|.|||+++|++. +.+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777999999999986 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=326.12 Aligned_cols=215 Identities=26% Similarity=0.312 Sum_probs=175.8
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--CC-eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 904 (1206)
.+.++|+++.+. .+.+|+|+||+|++||++||+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478999998874 2369999999999999999999999999999999999632 21 2379999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 975 (1206)
.+... ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.+.++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87532 124567999999988877 899999987643321 1122334556788999998853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||+|||||++||+||+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999986 5788899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 789998875
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=323.94 Aligned_cols=204 Identities=24% Similarity=0.348 Sum_probs=168.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCeeCCCCC-----ccceEEEecCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL-----DSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQH 234 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l-----~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~ 234 (1206)
+++|+|+|++|++|++++|+|||||||||||++|+|.+ ++. +|+|.++|.++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 36999999999999999999999999999999999999 776 999999999876433 13579999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 000971 235 DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1206)
Q Consensus 235 d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1206)
+.++ .+||+||+.++....+.... .+....++.+++.+||.+..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKLK---------------------------------EELDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChHHhc
Confidence 8777 89999999986543211000 0011235678899999876665
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.+. +..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ . ++|+.++|..+++.++||+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCE
Confidence 431 357999999999999999999999999999999999999999999998764 2 5566678888889999999
Q ss_pred EEEEcCCeEEEecChHH
Q 000971 395 IILLSDGQIVYQGPREL 411 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~ 411 (1206)
|++|++|++++.|++++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=333.66 Aligned_cols=218 Identities=22% Similarity=0.338 Sum_probs=175.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC-------CccceEEEecCCCC-
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-------VPERTAAYISQHDN- 236 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d~- 236 (1206)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999987 99999999987532 11357999999852
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-cccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTM 315 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1206)
.+...||+||+.|+....+... .+....++.+++.+||. +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 3445799999998754322100 01122467789999996 455654
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 316 vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
+ +.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++.. .+++|+.++|..+++..+||+|
T Consensus 143 ~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 P-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEE
Confidence 4 479999999999999999999999999999999999999999999988653 3456666888889999999999
Q ss_pred EEEcCCeEEEecChHHHHH---HHHhcCCCCCC
Q 000971 396 ILLSDGQIVYQGPRELVLE---FFESMGFKCPK 425 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~---~f~~~G~~cp~ 425 (1206)
++|++|++++.|+++++.+ .+...|+.+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999887642 23344554443
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=318.51 Aligned_cols=191 Identities=23% Similarity=0.381 Sum_probs=163.5
Q ss_pred cceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 000971 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 931 (1206)
Q Consensus 859 ~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~~Tv 931 (1206)
|||++|++ |+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 99999999999999999999998663 47999999986531 1235579999999988889999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000971 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1206)
Q Consensus 932 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgL 1011 (1206)
.||+.+..... .....++.+.++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 2233455688999999998777765 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 1012 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 1012 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
|+.++..+.+.|++++++ |+|||+++|++. ++...+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999775 899999999986 57788999999985 6887665
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=325.78 Aligned_cols=219 Identities=19% Similarity=0.256 Sum_probs=175.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--CC-eeEEEEEEcCc
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISGY 905 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g~ 905 (1206)
-+++|+++.++ .+.+|+|+||+|++|++++|+|+||||||||+++|+|... +. +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 35788887763 2469999999999999999999999999999999999754 11 24799999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 000971 906 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1206)
Q Consensus 906 ~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 980 (1206)
++.. ..+++.++|++|++.+++. |+.||+.+....+. .....+..++.++++++.++|.+........ .+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chhh
Confidence 7532 1245679999999888775 99999987643321 1112233455688999999997532111111 1357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999985 4899999999987 57788999999986 789
Q ss_pred EEEcCC
Q 000971 1061 IYVGPL 1066 (1206)
Q Consensus 1061 ~~~g~~ 1066 (1206)
++.|+.
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 988874
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=324.73 Aligned_cols=215 Identities=21% Similarity=0.307 Sum_probs=176.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC--C-eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--G-YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 904 (1206)
.+.++||++.++ .+.+|+|+||+|++||++||+||||||||||+++|+|...+ . +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 478999998874 13599999999999999999999999999999999996432 1 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 975 (1206)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ....++.++.++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 124567899999988877 899999988654321 1123344567888999998753 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. .+.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4899999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |++++.|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 6 788888874
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=329.21 Aligned_cols=223 Identities=20% Similarity=0.267 Sum_probs=180.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++++..+.. +...+.+.+|+|||++|++|+++||+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 789999988852110 0000124699999999999999999999999999999999998764 4799999998764
Q ss_pred cc---cccceEEEeecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCC
Q 000971 909 QE---TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~~---~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LS 982 (1206)
.. ..++.++|++|++. +++.+|+.+++.++..... ........+.++++++.++|. ...+.. +..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 21 22346899999875 5678899999987654332 223344456789999999994 555554 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
||||||++||++|+.+|+||||||||+|||+.+...+.+.|+++.++ |.|||+++|+++ ++...||++++|++ |+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999987 57778999999985 7888
Q ss_pred EEcCC
Q 000971 1062 YVGPL 1066 (1206)
Q Consensus 1062 ~~g~~ 1066 (1206)
+.|+.
T Consensus 230 ~~~~~ 234 (267)
T PRK15112 230 ERGST 234 (267)
T ss_pred ecCCH
Confidence 88874
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=326.73 Aligned_cols=219 Identities=20% Similarity=0.260 Sum_probs=176.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--CC-eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 904 (1206)
.+.++|+++.++ .+.+|+|+||+|++||++||+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478999998774 2369999999999999999999999999999999999754 21 1479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 979 (1206)
.++.. ...++.+||++|++.+++. ||+||+.|....+. ....++..+.++++++.+++.+........ ...
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHT-QAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhC-Ccc
Confidence 87632 2345679999999888875 99999987643321 112334455688899999986421111111 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
.||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999987 57889999999985 79
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
++..|+.
T Consensus 232 i~~~g~~ 238 (259)
T PRK14274 232 LVECNDT 238 (259)
T ss_pred EEEECCH
Confidence 9998874
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=331.75 Aligned_cols=224 Identities=26% Similarity=0.374 Sum_probs=180.2
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-------ccceEEEecCCC-CC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHD-NH 237 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d-~~ 237 (1206)
.+|+|||+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999987 999999999875311 135799999985 24
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMV 316 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1206)
+...||.||+.|+....+... .+....+..+++.+||. ...+..
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~- 141 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAEKLEMVGLADEFWEKS- 141 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhccCC-
Confidence 445799999999764332100 01122456788999996 344543
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.++||+|+
T Consensus 142 ----~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 142 ----PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-S-GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred ----cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999998754 3 4556668888889999999999
Q ss_pred EEcCCeEEEecChHHHH---HHHHhcCCCCCCCCChhHHH
Q 000971 397 LLSDGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFL 433 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~~---~~f~~~G~~cp~~~~~adfl 433 (1206)
+|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999998874 34556777777654444433
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=321.49 Aligned_cols=195 Identities=26% Similarity=0.380 Sum_probs=164.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1206)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999987 9999999998754321 35799999999899
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+.+||+||+.++.+..+... .+....++.+++.+||++..+..++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 137 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALPM- 137 (216)
T ss_pred ccccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh-
Confidence 99999999998754322100 0011235678899999877766554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+.+++..+||+|++|
T Consensus 138 ----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 138 ----QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999998754 3 455666888888899999999999
Q ss_pred cCCeE
Q 000971 399 SDGQI 403 (1206)
Q Consensus 399 ~~G~i 403 (1206)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=320.81 Aligned_cols=203 Identities=24% Similarity=0.395 Sum_probs=168.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 46999999999999999999999999999999999999987 9999999998765432 3469999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc-CCcccccccccCc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLEVCADTMVGDE 319 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 319 (1206)
+||+||+.+...... .. +....++.+++.+ ++++..++.+
T Consensus 90 ~t~~~~l~~~~~~~~--~~----------------------------------~~~~~~~~~l~~~~~l~~~~~~~~--- 130 (222)
T cd03224 90 LTVEENLLLGAYARR--RA----------------------------------KRKARLERVYELFPRLKERRKQLA--- 130 (222)
T ss_pred CcHHHHHHHHhhhcC--ch----------------------------------hHHHHHHHHHHHHHhhhhhhhCch---
Confidence 999999998653221 00 0011234456666 4665555544
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. . +++|+.++|+..++.+++|+|++|+
T Consensus 131 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 131 --GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-E-GVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhccEEEEee
Confidence 46999999999999999999999999999999999999999999998764 3 4556667788888999999999999
Q ss_pred CCeEEEecChHHHH
Q 000971 400 DGQIVYQGPRELVL 413 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1206)
+|++++.|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=341.28 Aligned_cols=194 Identities=24% Similarity=0.384 Sum_probs=169.2
Q ss_pred cceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 000971 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 931 (1206)
Q Consensus 859 ~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~~Tv 931 (1206)
|+||++++|++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 89999999999999999999999999999998763 47999999987532 1235679999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000971 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1206)
Q Consensus 932 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgL 1011 (1206)
+||+.|+.... ...+.++.++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 12334556899999999998888764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1012 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1012 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |++++.|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999775 899999999987 67888999999985 789999875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=340.48 Aligned_cols=190 Identities=24% Similarity=0.390 Sum_probs=167.3
Q ss_pred cceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 000971 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 931 (1206)
Q Consensus 859 ~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~~Tv 931 (1206)
||||++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.+||++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998764 47999999976532 1235679999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000971 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1206)
Q Consensus 932 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgL 1011 (1206)
+||+.|... ....+.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 112346889999999998888764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1012 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1012 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999998765 899999999986 68889999999985 799999985
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=326.15 Aligned_cols=216 Identities=22% Similarity=0.296 Sum_probs=178.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC-e--eEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-Y--ITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~-~--~~G~i~i~g 904 (1206)
.+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478999998874 235999999999999999999999999999999999975532 1 479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 975 (1206)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ..+..+.++.+.++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 86532 223557999999998887 899999987654331 1223344556888999999853 33332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||+|||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 457999999999999999999999999999999999999999999999865 699999999997 6888999999998
Q ss_pred c----CcEEEEEcCC
Q 000971 1056 R----GGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~----gg~~~~~g~~ 1066 (1206)
. .|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 4 4899999985
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=324.31 Aligned_cols=218 Identities=23% Similarity=0.332 Sum_probs=176.4
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEcCc
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISGY 905 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 905 (1206)
++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 78899988773 235999999999999999999999999999999999975421 25799999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 000971 906 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1206)
Q Consensus 906 ~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 980 (1206)
++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+.... ..+..
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELN-KPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHh-CChhh
Confidence 7532 123567999999988887 899999987653321 11223345567889999998643211111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
||||||||++||+||+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ .+.+.+|++++|++ |++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i 223 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GEL 223 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 799999999987 57788999999986 688
Q ss_pred EEEcCC
Q 000971 1061 IYVGPL 1066 (1206)
Q Consensus 1061 ~~~g~~ 1066 (1206)
+..|+.
T Consensus 224 ~~~g~~ 229 (250)
T PRK14262 224 IEYGPT 229 (250)
T ss_pred EEecCH
Confidence 888874
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=324.28 Aligned_cols=214 Identities=29% Similarity=0.410 Sum_probs=172.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1206)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999887 9999999998765431 35699999999899
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+.+||+||+.++..... .... .+. +..+ ......++.+++.+||.+..++.+
T Consensus 91 ~~~tv~~~l~~~~~~~~--~~~~---~~~------~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~-- 142 (241)
T cd03256 91 ERLSVLENVLSGRLGRR--STWR---SLF------GLFP---------------KEEKQRALAALERVGLLDKAYQRA-- 142 (241)
T ss_pred ccCcHHHHHHhhhcccc--hhhh---hhc------ccCc---------------HHHHHHHHHHHHHcCChhhhCCCc--
Confidence 99999999987542110 0000 000 0000 001223567889999987666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++...+ .+|+.++|+.+++.+++|+|++|
T Consensus 143 ---~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 143 ---DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG-ITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999998765334 45666788888899999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=318.78 Aligned_cols=224 Identities=22% Similarity=0.310 Sum_probs=181.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC-C-C-eeEEEEEEcCc
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT-G-G-YITGNITISGY 905 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~-~-~-~~~G~i~i~g~ 905 (1206)
++.+|++-++.... +...+++||||++++||++||+|.|||||||+.++|.|... + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 56788876665331 24679999999999999999999999999999999999765 2 2 45689999998
Q ss_pred cCCc---cc----ccceEEEeecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCC
Q 000971 906 PKKQ---ET----FARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976 (1206)
Q Consensus 906 ~~~~---~~----~~~~~gyv~q~~~--~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~ 976 (1206)
++-. .. +-+.+++++|++. +.|.+||.+.+.=......... .+++..+++.++|+.++|.+-...+- .
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~--~ 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLK--S 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHh--h
Confidence 6422 11 2347999999975 6788999887754433322111 35566778999999999987432221 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
.+..|||||||||.||.||+.+|+|||.||||++||...++.|+++|+++.+ .|.|+|++|||.. -+.+.+|||+||.
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 2468999999999999999999999999999999999999999999999986 5999999999997 4889999999999
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
. |++|..|+.
T Consensus 229 a-G~iVE~g~~ 238 (316)
T COG0444 229 A-GRIVEEGPV 238 (316)
T ss_pred C-cEEEEeCCH
Confidence 5 899999996
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=339.14 Aligned_cols=208 Identities=25% Similarity=0.307 Sum_probs=176.0
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCe----eCCCCCc-------cceEEEe
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH----DMGEFVP-------ERTAAYI 231 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~----~~~~~~~-------~~~~~yv 231 (1206)
....+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|. ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4577999999999999999999999999999999999999987 999999996 3333221 1469999
Q ss_pred cCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc
Q 000971 232 SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVC 311 (1206)
Q Consensus 232 ~Q~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1206)
+|+..++|.+||+||+.|+....+... .+....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999999999999999999865432110 0112345778999999887
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh
Q 000971 312 ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391 (1206)
Q Consensus 312 ~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1206)
.|..++ .|||||||||.|||+|+.+|+||+|||||+|||+.++.++.+.|+++.... +.+|+.++|+..++.++
T Consensus 158 ~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-~~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKL-NKTIIFVSHDLDEALKI 231 (382)
T ss_pred hcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh
Confidence 776554 699999999999999999999999999999999999999999999886533 45566688889999999
Q ss_pred cCeEEEEcCCeEEEecChHHHH
Q 000971 392 FDDIILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~ 413 (1206)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=329.41 Aligned_cols=216 Identities=23% Similarity=0.300 Sum_probs=180.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++.. ....+|+|||+++++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEC
Confidence 47899999887410 123599999999999999999999999999999999998763 479999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234567999999974 566789999998764322 123444456789999999998877775 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||++|||+|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999987 34 46999999996 68888
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8875
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=323.67 Aligned_cols=206 Identities=26% Similarity=0.397 Sum_probs=171.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
..+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 45999999999999999999999999999999999999987 9999999998765432 35789999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc--cccccccCc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV--CADTMVGDE 319 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~ 319 (1206)
||+||+.+..+..+... .+....+..+++.+||.+ ..++.
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~~---- 132 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADRY---- 132 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhcC----
Confidence 99999998654321100 001123567889999985 44443
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
++.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|++++... +++|+.++|...++.+++|+|++|+
T Consensus 133 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 133 -PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL-GKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999886533 4556667777788899999999999
Q ss_pred CCeEEEecChHHHH
Q 000971 400 DGQIVYQGPRELVL 413 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1206)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=317.93 Aligned_cols=198 Identities=31% Similarity=0.455 Sum_probs=166.6
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCCH
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1206)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999987 999999999876421 13579999999989999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.+.....+... .+....++.+++.+||++..+..++ .
T Consensus 96 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (218)
T cd03266 96 RENLEYFAGLYGLKG----------------------------------DELTARLEELADRLGMEELLDRRVG-----G 136 (218)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhhhhh-----h
Confidence 999987543321100 0112345678999999877776554 6
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.. . +.+|+.++|...++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-L-GKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3 44566677888889999999999999999
Q ss_pred EEec
Q 000971 404 VYQG 407 (1206)
Q Consensus 404 v~~G 407 (1206)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=311.71 Aligned_cols=190 Identities=47% Similarity=0.837 Sum_probs=162.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCC--CCCeeEEEEEEcCc
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK--TGGYITGNITISGY 905 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~--~~~~~~G~i~i~g~ 905 (1206)
.+.++||++.++.... ...+.+|+|+|+++++|++++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~~-------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSPS-------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCCC-------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 4789999988852100 01246999999999999999999999999999999999986 5 35899999998
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 906 PKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 906 ~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
+......++.++|++|++.+++.+|++||+.+...+. .||+||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 7654445677999999998888999999997642110 499999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998877999999999986557788999999985 6887754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=323.88 Aligned_cols=219 Identities=23% Similarity=0.256 Sum_probs=176.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 904 (1206)
.+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467889988763 246999999999999999999999999999999999975531 3479999999
Q ss_pred ccCCc----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 000971 905 YPKKQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1206)
Q Consensus 905 ~~~~~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 980 (1206)
.++.. ...++.++|++|++.+++ .||.||+.+...... ....+...+.+.++++.+++.+........ .+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 86531 234567999999998887 899999987643221 112233445678889999885422111111 1357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
||||||||++|||+|+.+|+||||||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 699999999987 57888999999985 789
Q ss_pred EEEcCC
Q 000971 1061 IYVGPL 1066 (1206)
Q Consensus 1061 ~~~g~~ 1066 (1206)
+..|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 998874
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=357.06 Aligned_cols=218 Identities=25% Similarity=0.321 Sum_probs=184.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|++++++ ++.+|+||||+|.+|+++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 78899998874 24699999999999999999999999999999999998764 4799999998753
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 909 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 909 ~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ..++.+||++|++.+++.+||+|++.|....+.. ...+.++.++.+.++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 1245689999999889999999999886432211 11223344566899999999998877764 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
|||||++||+||+.+|++|||||||+|||+.++..+++.|+++++.|.|||+++|++. ++...||++++|++ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999987 57789999999985 789999
Q ss_pred cCCCc
Q 000971 1064 GPLGR 1068 (1206)
Q Consensus 1064 g~~~~ 1068 (1206)
|+..+
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 88753
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=324.93 Aligned_cols=221 Identities=22% Similarity=0.271 Sum_probs=179.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 904 (1206)
.++++|+++.+. ...+|+||||++++|+++||+|+||||||||+++|+|...+. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 488999998874 135999999999999999999999999999999999976532 1369999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 979 (1206)
.++.. ...++.++|++|+..+++ .|+.||+.+...... ..+..+..+.+.++++.+++.+..+..... .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87521 234567999999988887 899999987643321 112233345688999999986532222221 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecC-
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG- 1057 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~g- 1057 (1206)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999987 688899999999863
Q ss_pred ---cEEEEEcCC
Q 000971 1058 ---GQEIYVGPL 1066 (1206)
Q Consensus 1058 ---g~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 899999885
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=327.77 Aligned_cols=203 Identities=25% Similarity=0.328 Sum_probs=170.4
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC-CCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGEM 241 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1206)
.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.+
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 5899999999999999999999999999999999999987 9999999998865432 356999999863 45678
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.|+....+... .+....++.+++.+||.+..+..+.
T Consensus 96 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~---- 137 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDK----------------------------------DEVERRVEEALKAVRMWDFRDKPPY---- 137 (274)
T ss_pred cHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCChh----
Confidence 99999998643221100 0112245678999999877776554
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++. . +.+|+.++|..+++.++||+|++|++|
T Consensus 138 -~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 138 -HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999998864 3 455666888888899999999999999
Q ss_pred eEEEecChHHH
Q 000971 402 QIVYQGPRELV 412 (1206)
Q Consensus 402 ~iv~~G~~~~~ 412 (1206)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=318.03 Aligned_cols=198 Identities=26% Similarity=0.394 Sum_probs=167.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 45999999999999999999999999999999999999887 9999999987754 2346799999999889999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
||+.+.....+... .+....++.+++.+||++..++.+ +.|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV-----EEL 129 (210)
T ss_pred HHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----hhC
Confidence 99988654322100 001223567889999987777654 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv 404 (1206)
||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.+ . +.+|+.++|...++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-A-GKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998764 3 455666888888899999999999999998
Q ss_pred Eec
Q 000971 405 YQG 407 (1206)
Q Consensus 405 ~~G 407 (1206)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=326.13 Aligned_cols=220 Identities=22% Similarity=0.258 Sum_probs=178.0
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC---CeeEEEEEEc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITIS 903 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~ 903 (1206)
..++++|+++.+. ++.+|+|+||.|++||+++|+||||||||||+++|+|...+ .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3589999998874 23699999999999999999999999999999999997542 1358999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCC
Q 000971 904 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1206)
Q Consensus 904 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~ 978 (1206)
|.+... ..+++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+........ .+
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHE-NA 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhC-Cc
Confidence 987542 1345679999999888875 99999987643321 112233345688899999986421111111 14
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..||||||||++|||+|+.+|+||||||||+|||+.++..+++.|+++++ +.|||+++|+++ ++.+.+|++++|++ |
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G 243 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-G 243 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999975 799999999987 57788999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 244 ~i~~~g~~ 251 (272)
T PRK14236 244 KLVEYGDT 251 (272)
T ss_pred EEEecCCH
Confidence 89998874
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=333.08 Aligned_cols=213 Identities=22% Similarity=0.251 Sum_probs=176.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc-------ceEEEecCCC--
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-------RTAAYISQHD-- 235 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-------~~~~yv~Q~d-- 235 (1206)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++....+|+|.|+|.++.....+ +.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 5699999999999999999999999999999999999987422489999999998765421 3699999997
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccc
Q 000971 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1206)
Q Consensus 236 ~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1206)
.++|.+||.+++.+......... ..+....+..+|+.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~---------------------------------~~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMS---------------------------------KAEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHHHHHHcCCCChHHH-
Confidence 68899999999987543321000 00112345677899999754332
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 316 vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
. +..+..|||||||||+||+||+.+|+++++||||+|||..++.++++.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEE
Confidence 2 3566789999999999999999999999999999999999999999999998653 3566777899999999999999
Q ss_pred EEEcCCeEEEecChHHHH
Q 000971 396 ILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1206)
++|++|++++.|+.+++.
T Consensus 233 ~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998875
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=324.03 Aligned_cols=214 Identities=21% Similarity=0.296 Sum_probs=175.6
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC--eeEEEEEEcC
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG--YITGNITISG 904 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~--~~~G~i~i~g 904 (1206)
..+.++|+++.++ +.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 4688999998762 24899999999999999999999999999999999986541 1579999999
Q ss_pred ccCCcccc-cceEEEeecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc---ccccccCCCCC
Q 000971 905 YPKKQETF-ARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP---LIQSLVGLPGV 978 (1206)
Q Consensus 905 ~~~~~~~~-~~~~gyv~q~~~--~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~~g~~~~ 978 (1206)
.++..... ++.++||+|++. +.+..|+.+++.+.+.... ... .++.++++++.++|.+ ..++. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87643222 356999999974 4566899999876433221 111 2356889999999976 34444 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
..||||||||++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999987 57788999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 789988874
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=320.09 Aligned_cols=195 Identities=27% Similarity=0.383 Sum_probs=162.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1206)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999987 9999999998865431 3569999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++.+||+||+.++....+... .+....++.+++.+||++..+..+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhcCh-
Confidence 999999999998754322100 001123567889999987766554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
+.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++..+ ++|+.++|..+++. .||+|++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAG-TTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHh-hhcEEEE
Confidence 46999999999999999999999999999999999999999999999865334 45555677777775 9999999
Q ss_pred EcCCeE
Q 000971 398 LSDGQI 403 (1206)
Q Consensus 398 L~~G~i 403 (1206)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=326.81 Aligned_cols=207 Identities=21% Similarity=0.341 Sum_probs=172.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1206)
+.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 35899999999999999999999999999999999999887 9999999998764322 34699999999899
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+.+||.||+.+....... . .. .+....+..+++.+||.+..+..++
T Consensus 97 ~~~tv~enl~~~~~~~~~---~------~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~- 142 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---L------PA------------------------PLLHSTVMMKLEAVGLRGAAKLMPS- 142 (269)
T ss_pred CCCCHHHHHHHHHHHccC---C------CH------------------------HHHHHHHHHHHHHcCChhhhhCChh-
Confidence 999999999885431100 0 00 0011235667899999887776554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.... +++|+.++|..+++.+++|+|++|
T Consensus 143 ----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 143 ----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL-GVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhhCEEEEE
Confidence 699999999999999999999999999999999999999999999886533 455666788888999999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988763
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=328.66 Aligned_cols=216 Identities=22% Similarity=0.337 Sum_probs=174.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCC-CCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHD-NHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1206)
..+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35899999999999999999999999999999999999987 9999999999865332 35799999986 36788
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.|+.+..+... .+....++.+++.+||++..+..+
T Consensus 97 ~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~---- 138 (279)
T PRK13650 97 ATVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKEREP---- 138 (279)
T ss_pred ccHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc----
Confidence 899999998654322100 011234577899999987776655
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
+.|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|+++++..+ ++|+.++|..+++ ..||+|++|++
T Consensus 139 -~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tilivtH~~~~~-~~~dri~~l~~ 215 (279)
T PRK13650 139 -ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ-MTVISITHDLDEV-ALSDRVLVMKN 215 (279)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHH-HhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999865334 4555566777777 58999999999
Q ss_pred CeEEEecChHHHHH---HHHhcCCCCC
Q 000971 401 GQIVYQGPRELVLE---FFESMGFKCP 424 (1206)
Q Consensus 401 G~iv~~G~~~~~~~---~f~~~G~~cp 424 (1206)
|+++..|+++++.. .++..|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 99999999987653 2334455433
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=312.98 Aligned_cols=183 Identities=45% Similarity=0.783 Sum_probs=156.4
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGE 240 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~ 240 (1206)
..+.+|+|+|+.|++|++++|+|||||||||||++|+|.+++....+|+|.++|.++.... .++.++|++|++.+++.
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 3457999999999999999999999999999999999999821113999999999876542 24579999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.++.+.. .+..
T Consensus 98 ~tv~~~l~~~~~~~--------------------------------------------------------------~~~~ 115 (202)
T cd03233 98 LTVRETLDFALRCK--------------------------------------------------------------GNEF 115 (202)
T ss_pred CcHHHHHhhhhhhc--------------------------------------------------------------cccc
Confidence 99999998753210 1123
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
+..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++....+.++|+++||+.+++.+++|++++|++
T Consensus 116 ~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 34799999999999999999999999999999999999999999999986544567788788888899999999999999
Q ss_pred CeEEEec
Q 000971 401 GQIVYQG 407 (1206)
Q Consensus 401 G~iv~~G 407 (1206)
|++++.|
T Consensus 196 G~i~~~g 202 (202)
T cd03233 196 GRQIYYG 202 (202)
T ss_pred CEEEecC
Confidence 9998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=324.36 Aligned_cols=215 Identities=25% Similarity=0.265 Sum_probs=176.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc-
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP- 906 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~- 906 (1206)
.+.++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 478999998874 23599999999999999999999999999999999998663 47999999986
Q ss_pred ----CCcc---c----ccceEEEeecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000971 907 ----KKQE---T----FARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSL 972 (1206)
Q Consensus 907 ----~~~~---~----~~~~~gyv~q~~~--~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 972 (1206)
+... . .++.+||++|++. +.+.+|+.||+.+...... .....+....+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999974 5677899999876432111 1122334556889999999974 55554
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeE
Q 000971 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 973 ~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
+..||||||||++|||||+.+|+||||||||+|||+.+...+++.|++++++ |.|||+++|++. .+...+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998765 899999999986 466789999
Q ss_pred EEEecCcEEEEEcCC
Q 000971 1052 FLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1052 ~ll~~gg~~~~~g~~ 1066 (1206)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 799999874
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=322.30 Aligned_cols=216 Identities=24% Similarity=0.283 Sum_probs=176.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCe---eEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY---ITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~---~~G~i~i~g 904 (1206)
.+.++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|...+.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 477889988773 2469999999999999999999999999999999999764322 379999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 975 (1206)
.++.. ..+++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87532 1345579999999999999999999987543221 1122334456777788787643 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999987 5777899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 789998875
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=317.19 Aligned_cols=211 Identities=23% Similarity=0.342 Sum_probs=176.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.+... .+.+.+|+||||++++|+++||+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhH
Confidence 6788998876310 1125799999999999999999999999999999999997653 4899999998753
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
.. .+++.++|++|++.+++.+|+.||+.+...... ....++....+.++++.++|.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 245679999999988888999999988654321 1234445567899999999988777763 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
+|||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++ +.+.+|++++|.+ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999985 4578999999985 553
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=319.93 Aligned_cols=201 Identities=26% Similarity=0.345 Sum_probs=166.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1206)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999887 9999999998876542 2469999999988
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++.+||+||+.|.....+... .+.+..++.+++.+||++..++.+
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 143 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHRP- 143 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 999999999998654221100 011223567889999987766554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
+.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.... +++|+.++|+.+++.. +|++++
T Consensus 144 ----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 144 ----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQ-GTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHh-hCEEEE
Confidence 4699999999999999999999999999999999999999999999876433 4455557777777665 589999
Q ss_pred EcCCeEEEecCh
Q 000971 398 LSDGQIVYQGPR 409 (1206)
Q Consensus 398 L~~G~iv~~G~~ 409 (1206)
|.+|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998863
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=333.58 Aligned_cols=209 Identities=22% Similarity=0.256 Sum_probs=174.8
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCC--
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHD-- 235 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d-- 235 (1206)
...+|+|||+.|++||+++|+|+||||||||+++|+|+++++ +|+|.|+|.++..... ++.++||+|++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 357999999999999999999999999999999999999987 9999999999876532 35799999997
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccc
Q 000971 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADT 314 (1206)
Q Consensus 236 ~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1206)
.++|.+||.||+.+..+..... +. ..+....++.+++.+||. ...++
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~--------~~------------------------~~~~~~~~~~~l~~vgl~~~~~~~ 157 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPK--------LS------------------------RQEVKDRVKAMMLKVGLLPNLINR 157 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccC--------CC------------------------HHHHHHHHHHHHHHcCCChHHhcC
Confidence 5889999999999865432100 00 001223456789999994 34444
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.+..|||||||||+||+||+.+|+++++||||+|||..++.++++.|+++.+. .+++++.++|+...+.+++|+
T Consensus 158 -----~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dr 231 (331)
T PRK15079 158 -----YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDR 231 (331)
T ss_pred -----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 45579999999999999999999999999999999999999999999988653 356677789999999999999
Q ss_pred EEEEcCCeEEEecChHHHH
Q 000971 395 IILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1206)
|++|++|++++.|+.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998774
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=317.52 Aligned_cols=202 Identities=25% Similarity=0.306 Sum_probs=183.0
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc------cc-ccceEEEeecCCCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ------ET-FARISGYCEQNDIHS 926 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~-~~~~~gyv~q~~~~~ 926 (1206)
..-++|+|++|+.||++.|||-||||||||+++|.+...+ ..|+|+++|.++.. .. .++.++.|+|+..++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 4579999999999999999999999999999999998774 58999999987532 11 345789999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000971 927 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1006 (1206)
Q Consensus 927 ~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDE 1006 (1206)
|+.||.||+.|+..++ .++++++++++.++|+.+||.++.++++ ..|||||||||.|||||+.+|+||+|||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999997776 5678999999999999999999999984 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 1007 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1007 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
|.|+|||--+..+++-|.++.++ ++|||++|||.+ |.+..-|||.+|+ +|++|..|++.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~ 250 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPE 250 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHH
Confidence 99999999999999999988655 899999999997 7889999999998 68999999863
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=321.65 Aligned_cols=219 Identities=20% Similarity=0.240 Sum_probs=175.8
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 904 (1206)
.+.++|+++.+. ++.+|+|+|++|.+|+++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 478899998774 235999999999999999999999999999999999976532 2369999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 979 (1206)
.++.. ..+++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+........ .+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHK-SGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhC-Ccc
Confidence 86532 1345679999999988875 999999887543311 11223345677888888875422111111 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999985 5899999999987 57788999999985 78
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=324.14 Aligned_cols=213 Identities=26% Similarity=0.351 Sum_probs=171.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1206)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45999999999999999999999999999999999999887 9999999998765321 35699999999899
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+.+||+||+.++..... ..+. .+.. .. ..+....++.+++.+||.+..+..+
T Consensus 92 ~~~tv~~~l~~~~~~~~--~~~~---~~~~------~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 143 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYK--PTWR---SLLG------RF---------------SEEDKERALSALERVGLADKAYQRA-- 143 (243)
T ss_pred ccccHHHHHhhcccccc--cchh---hhhc------cc---------------cHHHHHHHHHHHHHcCcHhhhcCCc--
Confidence 99999999987532110 0000 0000 00 0011224567889999987666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+.. +++|+.++|..+++.++||+|++|
T Consensus 144 ---~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 144 ---DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED-GITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 4799999999999999999999999999999999999999999999876533 455666778888888999999999
Q ss_pred cCCeEEEecChHHH
Q 000971 399 SDGQIVYQGPRELV 412 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1206)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=356.79 Aligned_cols=218 Identities=26% Similarity=0.319 Sum_probs=183.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|++++++ ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 378999998773 24699999999999999999999999999999999998763 479999999875
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHhhhhc--C-C-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 000971 908 KQE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLR--L-P-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1206)
Q Consensus 908 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr--~-~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 979 (1206)
... ..++.+|||+|++.+++.+||+||+.++.... . . ...+.++.++.+.++++.++|.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 431 12346999999998899999999998753211 0 1 01123344567899999999998877764 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
.|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|++. .+...+|++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999888999999999986 57788999999985 78
Q ss_pred EEEEcCCC
Q 000971 1060 EIYVGPLG 1067 (1206)
Q Consensus 1060 ~~~~g~~~ 1067 (1206)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (510)
T PRK09700 223 SVCSGMVS 230 (510)
T ss_pred Eeeecchh
Confidence 99999864
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=368.12 Aligned_cols=210 Identities=25% Similarity=0.404 Sum_probs=177.0
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+|.+. +++.+|+|+|++|+||+++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999987542 1246999999999999999999999999999999999987 4 37999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.+ ..+++.++||+|++.++. -|++||+.++. .+.+. +.++++++..++.+.. |+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 654 456788999999998886 59999998852 12332 3478888888876543 5566665
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
| .+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|+|+++|+++ ....+|+|++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 4 5799999999999999999999999999999999999999999999875 5899999999985 4677999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 799998874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=368.85 Aligned_cols=215 Identities=29% Similarity=0.437 Sum_probs=180.4
Q ss_pred CCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcC
Q 000971 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 904 (1206)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g 904 (1206)
....++|+||+|+|+..+ +..+|+|+|+.|++|+.+||+|||||||||++.+|.+...| .+|+|.|||
T Consensus 347 ~~g~ief~nV~FsYPsRp----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP--~~G~V~idG 414 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRP----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP--TSGEVLIDG 414 (1228)
T ss_pred cccceEEEEEEecCCCCC----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCceEEEcC
Confidence 445799999999998653 34699999999999999999999999999999999998774 589999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCC-------ccccccccC
Q 000971 905 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL-------KPLIQSLVG 974 (1206)
Q Consensus 905 ~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~~g 974 (1206)
.++.. ...+..+|.|.|+|.++. .|++||+.|+. .+.+ ++.++++.+..+. .+-.++.+|
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~-----~dat----~~~i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGK-----PDAT----REEIEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCC-----Cccc----HHHHHHHHHHccHHHHHHhhHHhhccccc
Confidence 98654 446778999999997764 79999999862 1222 2335666655554 344567778
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEE
Q 000971 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1206)
Q Consensus 975 ~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll 1054 (1206)
..|+ .||||||||++|||||+++|+||+||||||+||+.+.+.|+++|++. ..|+|.|+++|+.| .| +.+|++++|
T Consensus 485 e~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLS-tI-rnaD~I~v~ 560 (1228)
T KOG0055|consen 485 ERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLS-TI-RNADKIAVM 560 (1228)
T ss_pred CCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehh-hh-hccCEEEEE
Confidence 7665 49999999999999999999999999999999999999999999886 46999999999987 34 559999999
Q ss_pred ecCcEEEEEcCC
Q 000971 1055 KRGGQEIYVGPL 1066 (1206)
Q Consensus 1055 ~~gg~~~~~g~~ 1066 (1206)
++ |+++..|..
T Consensus 561 ~~-G~IvE~G~h 571 (1228)
T KOG0055|consen 561 EE-GKIVEQGTH 571 (1228)
T ss_pred EC-CEEEEecCH
Confidence 96 799999985
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=365.60 Aligned_cols=134 Identities=22% Similarity=0.247 Sum_probs=108.9
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCCCCHHHHHHHHHHHHHh---hCCc
Q 000971 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 1000 (1206)
Q Consensus 925 ~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~~~LSgGqrqrl~ia~aL~---~~P~ 1000 (1206)
.+...||.|+|.++..-......+.++..+.+ ++|+.+||.+. .++. ...||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45568999999887542211112233444556 58899999876 5665 3579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe-----cCcEEEEEcCC
Q 000971 1001 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1066 (1206)
Q Consensus 1001 iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~-----~gg~~~~~g~~ 1066 (1206)
+|+|||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|++++|. .||+++..|+.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 99999999999999999999999999888999999999986 35 8999999996 36899999986
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=320.47 Aligned_cols=201 Identities=25% Similarity=0.335 Sum_probs=167.1
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC--eeEEEEEEcCccCCcccc-cceEEEeecCCC--CCCCCC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG--YITGNITISGYPKKQETF-ARISGYCEQNDI--HSPFVT 930 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~q~~~--~~~~~T 930 (1206)
+|+|||+++++|++++|+||||||||||+++|+|...+. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999976531 147999999987653322 357899999974 567789
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc---cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000971 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK---PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1007 (1206)
Q Consensus 931 v~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~---~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEP 1007 (1206)
+.|++.+...... ...+..++.++++++.+++. +..+.. +..|||||||||+|||+|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 11233456689999999998 344554 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1008 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1008 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|+|||+.+...+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999987 57788999999985 789888874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=325.61 Aligned_cols=215 Identities=20% Similarity=0.256 Sum_probs=175.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--C-CeeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 904 (1206)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999998874 2369999999999999999999999999999999999632 1 13479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 975 (1206)
.++.. ..+++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87532 1245679999999888874 99999987643221 1112233456788899998853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 5778999999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 5 789999874
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=363.77 Aligned_cols=207 Identities=26% Similarity=0.387 Sum_probs=167.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|++|+||+.++|+||||||||||+++|+|.+ |. +|+|.+||+++.+... ++.++||+|++.+|. .
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-G 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-c
Confidence 35899999999999999999999999999999999999 76 8999999999988765 468999999987776 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
|++|||.++.. +.+.+...+++...+ .+..+ -.|++..||.||+.+.
T Consensus 438 TI~eNI~~g~~-------------------------~~~~eei~~al~~a~------l~~~i--~~lp~G~dT~vge~G~ 484 (588)
T PRK11174 438 TLRDNVLLGNP-------------------------DASDEQLQQALENAW------VSEFL--PLLPQGLDTPIGDQAA 484 (588)
T ss_pred CHHHHhhcCCC-------------------------CCCHHHHHHHHHHhC------HHHHH--HhcccccccccccCCC
Confidence 99999998631 111111112211110 11222 2466778999998754
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
.||||||||++||||++.+|+||+||||||+||+.++..|.+.|+++. .++|+|+..|++ +....||+|++|++|
T Consensus 485 -~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G 559 (588)
T PRK11174 485 -GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDG 559 (588)
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCC
Confidence 699999999999999999999999999999999999999999998864 356666655544 456789999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
++++.|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999998864
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=339.78 Aligned_cols=206 Identities=29% Similarity=0.438 Sum_probs=165.8
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1206)
++++|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||++..+..+ +++++||+|++.+|+ -|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-cc
Confidence 6899999999999999999999999999999999999987 9999999999887764 588999999987666 59
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
+||||.++..-. + |+.+.++.. -..+.+.+.-+...||.+|+.+ +
T Consensus 411 ireNi~l~~~~~---s-----------------------~e~i~~al~--------~a~l~~~v~~p~GLdt~ige~G-~ 455 (559)
T COG4988 411 IRENILLARPDA---S-----------------------DEEIIAALD--------QAGLLEFVPKPDGLDTVIGEGG-A 455 (559)
T ss_pred HHHHhhccCCcC---C-----------------------HHHHHHHHH--------HhcHHHhhcCCCcccchhccCC-C
Confidence 999999964210 0 000000000 0012222222556789999765 5
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
+|||||+|||++|||++.+++++++||||++||.+|...|.+.|.++++ ++|+++ ++|.. +...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~-itHrl-~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLV-ITHRL-EDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEE-EEcCh-HHHhcCCEEEEecCCc
Confidence 8999999999999999999999999999999999999999999998864 456555 55544 4556689999999999
Q ss_pred EEEecChHHHHH
Q 000971 403 IVYQGPRELVLE 414 (1206)
Q Consensus 403 iv~~G~~~~~~~ 414 (1206)
++++|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999998853
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=318.99 Aligned_cols=205 Identities=26% Similarity=0.367 Sum_probs=169.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc--cceEEEecCCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (1206)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999999987 9999999998764332 247999999988889999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 91 ~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 131 (236)
T TIGR03864 91 VRQNLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKVR----- 131 (236)
T ss_pred HHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----
Confidence 9999987643321100 0011235667889999877776554
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++++..+. +|+.++|..+++. .+|++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~-tiii~sH~~~~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGL-SVLWATHLVDEIE-ADDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCC-EEEEEecChhhHh-hCCEEEEEeCCe
Confidence 69999999999999999999999999999999999999999999988653344 4555677777775 499999999999
Q ss_pred EEEecChHHHH
Q 000971 403 IVYQGPRELVL 413 (1206)
Q Consensus 403 iv~~G~~~~~~ 413 (1206)
+++.|+++++.
T Consensus 210 i~~~~~~~~~~ 220 (236)
T TIGR03864 210 VLADGAAAELR 220 (236)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=314.78 Aligned_cols=202 Identities=23% Similarity=0.277 Sum_probs=173.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++ ++.+|+++||++++|++++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 588999998763 23599999999999999999999999999999999998764 479999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.....++.++|++|++.+++.+|+.||+.+...++. . ..++.++++++.++|.+..+..+ ..||+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543334568999999888888999999987654321 1 12345788999999988777764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
|++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++|+|||+++|+++ ++.+.+|+++++..
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999999999999999999999999999999998888999999999997 68899999999863
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=321.69 Aligned_cols=219 Identities=18% Similarity=0.231 Sum_probs=178.3
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC--C-eeEEEEEEc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--G-YITGNITIS 903 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~--~-~~~G~i~i~ 903 (1206)
..+..+++++++. ++.+|+|+||.+++|+++||+|+||||||||+++|+|...+ + +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 4577788777653 35699999999999999999999999999999999997643 1 247999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCC
Q 000971 904 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1206)
Q Consensus 904 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~ 978 (1206)
|.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . .....+.++++++.++|.+..+...+. ..
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Cc
Confidence 987532 23456799999998877 5999999988754332 1 123345688999999986533222221 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe---
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK--- 1055 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~--- 1055 (1206)
..||+|||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 5799999999999999999999999999999999999999999999985 4799999999987 5778999999996
Q ss_pred ----cCcEEEEEcCC
Q 000971 1056 ----RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ----~gg~~~~~g~~ 1066 (1206)
++|+++..|+.
T Consensus 226 ~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 226 SQGTRTGYLVEMGPT 240 (261)
T ss_pred ccccCCceEEEeCCH
Confidence 46899999985
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=327.09 Aligned_cols=215 Identities=20% Similarity=0.277 Sum_probs=175.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--C-CeeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 904 (1206)
.+.++|+++.++ ...+|+|+||+|++||++||+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 589999998874 2359999999999999999999999999999999999642 1 02479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc----cccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK----PLIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~~g~ 975 (1206)
.++.. ..+++.+||++|++.+++. ||.||+.|....+.. .+....++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 86532 1245679999999888874 999999986533211 12233345678889998874 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||||||||++|||||+.+|++|||||||+|||+.+...+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999987 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 5 789998874
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=339.53 Aligned_cols=209 Identities=26% Similarity=0.423 Sum_probs=175.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
+++|+|+|+.|++||+++|+||||||||||||+|+|.++|. +|+|.++|.++..... ++.++||+|+..+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999987 9999999998876443 36799999999888999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.++..... .++.. . ..+....++++++.+||.+..++.+
T Consensus 93 tv~e~v~~~~~~~~--~~~~~---~-------------------------~~~~~~~v~~~le~vgl~~~~~~~~----- 137 (402)
T PRK09536 93 DVRQVVEMGRTPHR--SRFDT---W-------------------------TETDRAAVERAMERTGVAQFADRPV----- 137 (402)
T ss_pred CHHHHHHhccchhc--ccccC---C-------------------------CHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 99999998642110 00000 0 0011234678899999988777655
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
+.|||||||||.||++|+.+|++|+|||||+|||+.+..++.+.|+++++ .+ ++|+.++|..+++.++||++++|++|
T Consensus 138 ~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g-~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DG-KTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEECCHHHHHHhCCEEEEEECC
Confidence 47999999999999999999999999999999999999999999999875 34 45666888999999999999999999
Q ss_pred eEEEecChHHHH
Q 000971 402 QIVYQGPRELVL 413 (1206)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1206)
++++.|+++++.
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999998764
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=312.80 Aligned_cols=195 Identities=26% Similarity=0.320 Sum_probs=166.9
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
+++|+++.++ .+.+|+|+|++|++|+++||+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 5678887663 24699999999999999999999999999999999998764 47999999987532
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 910 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 910 --~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
..+++.++|++|++.+++.+|++||+.+.... . .++.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 23456799999998888899999999875311 0 2345789999999988777663 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEE
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll 1054 (1206)
|++||++|+.+|++|+|||||+|||+.+...+++.|+++.++|+|||+++|++. ++...+++++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998777999999999986 677889999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=313.23 Aligned_cols=199 Identities=22% Similarity=0.289 Sum_probs=166.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ .+.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 56788887763 24699999999999999999999999999999999998664 4799999998753
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
. ..+++.++|++|++.+++.+|+.||+.+....+. . ..++.++++++.++|.+..++. +..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 2345678999999988899999999988654321 1 1235688999999998777765 357999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEE
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll 1054 (1206)
||++||+||+++|++|+|||||+|||+.+...+++.|++++++|.|||+++|++. .+.+.-+|++.+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777999999999986 454544566554
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=321.28 Aligned_cols=215 Identities=25% Similarity=0.330 Sum_probs=175.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--CC-eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 904 (1206)
.+.++|++++++ .+.+|+|+|++|++||++||+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478999998874 2469999999999999999999999999999999999764 11 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 975 (1206)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 124567999999988776 799999987543221 1122333456788999999853 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999854 799999999987 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 788888874
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=330.49 Aligned_cols=213 Identities=21% Similarity=0.244 Sum_probs=173.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCeeCCCCCcc-------ceEEEecCCC-
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGEFVPE-------RTAAYISQHD- 235 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~-~~~G~I~~nG~~~~~~~~~-------~~~~yv~Q~d- 235 (1206)
..+|+|||+.|++||+++|+||||||||||+++|+|.+++.. ..+|+|.++|.++.....+ +.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999987422 1389999999998665421 3699999997
Q ss_pred -CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 000971 236 -NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1206)
Q Consensus 236 -~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1206)
.+.|.+||.+++........... ..+....++.+|+.+||.+..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~---------------------------------~~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGN---------------------------------KKTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHHHHHHCCCCChHH-
Confidence 47899999999876543211000 0112234677899999975221
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
+-+.....|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++... .+.+++.++|+...+..++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 112455689999999999999999999999999999999999999999999998653 345677788999999999999
Q ss_pred EEEEcCCeEEEecChHHHH
Q 000971 395 IILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1206)
|++|++|++++.|+.+++.
T Consensus 224 i~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=315.33 Aligned_cols=195 Identities=25% Similarity=0.378 Sum_probs=165.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-ccceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-PERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 243 (1206)
.++|+|+|+.+++|++++|+|||||||||||++|+|.++++ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999999887 999999998775421 13579999999988999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.+.....+. ....++.+++.+||.+..++.++ .
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVK-----G 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHh-----h
Confidence 9999886432110 01124567889999877766544 6
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.. .+ .+++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QG-ITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998764 34 4555577888888899999999999999
Q ss_pred EEec
Q 000971 404 VYQG 407 (1206)
Q Consensus 404 v~~G 407 (1206)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=321.50 Aligned_cols=215 Identities=25% Similarity=0.270 Sum_probs=176.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 904 (1206)
.+.++|+++.++ .+.+|+|+||++++||+++|+||||||||||+++|+|..... ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478999998774 246999999999999999999999999999999999964321 1379999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc----cccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL----IQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~~g~ 975 (1206)
.++.. ...++.++|++|++.+++. ||+||+.|....+.. ......++.+.++++.+++.+. .++.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 146 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS--- 146 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC---
Confidence 87542 2335679999999988874 999999987544321 1223345568889999988532 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 147 --ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 689999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 223 ~-G~i~~~g~~ 232 (253)
T PRK14261 223 L-GKLIEFDKT 232 (253)
T ss_pred C-CEEEEcCCH
Confidence 5 789988875
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=324.15 Aligned_cols=219 Identities=22% Similarity=0.290 Sum_probs=178.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC---CeeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 904 (1206)
.+.++||+++++ .+.+|+||||+|++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 579999999874 24699999999999999999999999999999999997653 13589999999
Q ss_pred ccCCc----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 000971 905 YPKKQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1206)
Q Consensus 905 ~~~~~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 980 (1206)
.++.. ..+++.++|++|++.+++ .|++||+.+...... ..+.++.+..+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87532 234567999999988887 899999987643221 12334444567888999998753221111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 57889999999985 799
Q ss_pred EEEcCC
Q 000971 1061 IYVGPL 1066 (1206)
Q Consensus 1061 ~~~g~~ 1066 (1206)
++.|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 999885
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=325.73 Aligned_cols=218 Identities=22% Similarity=0.379 Sum_probs=175.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++ +++.+|+|||++|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 488999998873 124699999999999999999999999999999999998764 479999999876
Q ss_pred CcccccceEEEeecCCCCC--CCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 908 KQETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~--~~~Tv~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
.....++.++|++|++.+. ...+++|++.+...-... ........++.++++++.++|.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999997653 234788888653211000 01112233456788999999988877764 479999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
||||++||+||+.+|+||+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 577899999776 4 7999998
Q ss_pred CCC
Q 000971 1065 PLG 1067 (1206)
Q Consensus 1065 ~~~ 1067 (1206)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 864
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=331.47 Aligned_cols=217 Identities=21% Similarity=0.410 Sum_probs=174.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC-------------------Ccc
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-------------------VPE 225 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~-------------------~~~ 225 (1206)
.++|+|||+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 45999999999999999999999999999999999999987 99999999887542 113
Q ss_pred ceEEEecCCC--CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHH
Q 000971 226 RTAAYISQHD--NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYL 303 (1206)
Q Consensus 226 ~~~~yv~Q~d--~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l 303 (1206)
+.++||+|++ .+++ .||+||+.|+....+.. . .+....++.++
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK-K---------------------------------SEAKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhcCCC-H---------------------------------HHHHHHHHHHH
Confidence 5799999986 3554 59999998864322110 0 01122456788
Q ss_pred HHcCCc-ccccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 000971 304 KVLGLE-VCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL 382 (1206)
Q Consensus 304 ~~lgL~-~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~ 382 (1206)
+.+||+ +..+. .+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++
T Consensus 161 ~~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~-g~Tiiivt 233 (320)
T PRK13631 161 NKMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-N-NKTVFVIT 233 (320)
T ss_pred HHcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEe
Confidence 999996 34443 3457999999999999999999999999999999999999999999998754 3 45566688
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEecChHHHHH---HHHhcCCCCCCC
Q 000971 383 QPAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFESMGFKCPKR 426 (1206)
Q Consensus 383 q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~---~f~~~G~~cp~~ 426 (1206)
|..+++..+||+|++|++|++++.|+++++.. .++..|+.+|..
T Consensus 234 Hd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~ 280 (320)
T PRK13631 234 HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRV 280 (320)
T ss_pred cCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCChH
Confidence 88888999999999999999999999987642 344556655543
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=353.46 Aligned_cols=220 Identities=23% Similarity=0.340 Sum_probs=182.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.++ ++.+|+||||++++|+++||+||||||||||+++|+|...+++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56788988773 24699999999999999999999999999999999997654224899999998764
Q ss_pred ccc----ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCcccc-ccccCCCCCCCCC
Q 000971 909 QET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETRKMFIEEVMELVELKPLI-QSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~~~----~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~~g~~~~~~LS 982 (1206)
... .++.+|||+|++.+++.+||.||+.+....+... ....++.++.++++++.++|.+.. +.. +..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 311 2356899999998889999999998864332111 122334456789999999998654 343 35799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||||+||+||+.+|+||||||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999987 57788999999986 68899
Q ss_pred EcCCCc
Q 000971 1063 VGPLGR 1068 (1206)
Q Consensus 1063 ~g~~~~ 1068 (1206)
.|+...
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 888653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=320.94 Aligned_cols=205 Identities=23% Similarity=0.353 Sum_probs=170.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-----------ccceEEEecC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----------PERTAAYISQ 233 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-----------~~~~~~yv~Q 233 (1206)
..+|+|+|+.|++|++++|+||||||||||+++|+|.++++ +|+|.++|.++.... .++.++|++|
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 35999999999999999999999999999999999999887 999999999875321 1357999999
Q ss_pred CCCCCCCCCHHHHHHHHhhh-cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc
Q 000971 234 HDNHIGEMTVRETLAFSARC-QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA 312 (1206)
Q Consensus 234 ~d~~~~~lTV~Etl~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1206)
++.+++.+||+||+.++... .+. .. .+....+..+++.+||.+..
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~gl~~~~ 138 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKGE-PK---------------------------------EEATARARELLAKVGLAGKE 138 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcCC-CH---------------------------------HHHHHHHHHHHHHcCCcchh
Confidence 99899999999999885321 110 00 01122356778899998776
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhc
Q 000971 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1206)
Q Consensus 313 dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~f 392 (1206)
|+.+ +.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. . +.+|+.++|..+++.+++
T Consensus 139 ~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~tH~~~~~~~~~ 211 (250)
T PRK11264 139 TSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-E-KRTMVIVTHEMSFARDVA 211 (250)
T ss_pred hCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhc
Confidence 6544 47999999999999999999999999999999999999999999998764 3 445666788888999999
Q ss_pred CeEEEEcCCeEEEecChHHHH
Q 000971 393 DDIILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~ 413 (1206)
|+|++|++|++++.|+.+++.
T Consensus 212 d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 212 DRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988763
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=319.29 Aligned_cols=215 Identities=25% Similarity=0.324 Sum_probs=174.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--CC-eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 904 (1206)
.+.++||++.++ .+.+|+|+||+|++||++||+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478999998774 2469999999999999999999999999999999999643 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 975 (1206)
.++.. ...++.+||++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87531 234567999999988887 6999999876443321 112223445778888888753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. .+.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 589999999987 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 789988874
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=317.04 Aligned_cols=204 Identities=34% Similarity=0.541 Sum_probs=165.2
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC---CCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD---SSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1206)
.+++|+|+|++|++||+++|+||||||||||+++|+|.++ ++ +|+|.++|.++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3579999999999999999999999999999999999998 65 99999999987643345679999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHH-HHHHcCCcccccccccCc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDY-YLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~ 319 (1206)
+||+||+.|+..........+ . .....++. .++.+++.+..++.
T Consensus 96 ~tv~enl~~~~~~~~~~~~~~---~----------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 140 (226)
T cd03234 96 LTVRETLTYTAILRLPRKSSD---A----------------------------IRKKRVEDVLLRDLALTRIGGNL---- 140 (226)
T ss_pred CcHHHHHHHHHHhhcccccch---H----------------------------HHHHHHHHHHHHhhcchhhhccc----
Confidence 999999998754322100000 0 00011233 78888887666554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++..++.++||+|++|+
T Consensus 141 -~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 141 -VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred -ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 447999999999999999999999999999999999999999999998764 355666655544468999999999999
Q ss_pred CCeEEEec
Q 000971 400 DGQIVYQG 407 (1206)
Q Consensus 400 ~G~iv~~G 407 (1206)
+|++++.|
T Consensus 219 ~G~i~~~g 226 (226)
T cd03234 219 SGEIVYSG 226 (226)
T ss_pred CCEEEecC
Confidence 99999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=318.83 Aligned_cols=205 Identities=19% Similarity=0.339 Sum_probs=171.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-----ccceEEEecCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDNHIG 239 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~~~ 239 (1206)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++..++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 45999999999999999999999999999999999999887 999999999876421 1356999999998899
Q ss_pred CCCHHHHHHHHhh-hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 240 EMTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 240 ~lTV~Etl~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
.+||+||+.|+.. ..+.. . .+....++++++.+||++..+..+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~-- 134 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------K------------------------EEAEKQARELLAKVGLAERAHHYP-- 134 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChHHHhcCh--
Confidence 9999999988542 11100 0 011123567889999987666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
+.|||||||||+||++++.+|++++|||||+|||..+...+.+.|+++.. .+ ++|+.++|+.+++..+||++++|
T Consensus 135 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 135 ---SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EG-MTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred ---hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999998754 34 55666778888898999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=315.20 Aligned_cols=192 Identities=25% Similarity=0.349 Sum_probs=160.2
Q ss_pred CceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000971 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 931 (1206)
Q Consensus 852 ~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 931 (1206)
+.+.+|+|+||+|++|++++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCCCCCcH
Confidence 456799999999999999999999999999999999998663 48999999975421 1112234567999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000971 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1206)
Q Consensus 932 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgL 1011 (1206)
+||+.+....+. ......++.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 102 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999987654321 233444556889999999988877764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 1012 DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 1012 D~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
|+.++..+.+.|+++.++|.|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999998777899999999986 57778999999985 7887654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=314.32 Aligned_cols=192 Identities=27% Similarity=0.362 Sum_probs=160.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCC-CCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDN-HIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 243 (1206)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .++.+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 46999999999999999999999999999999999999987 9999999998754323457999999864 3557899
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.+.....+. ....++.+++.+||.+..++.++ .
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (205)
T cd03226 90 REELLLGLKELDA--------------------------------------GNEQAETVLKDLDLYALKERHPL-----S 126 (205)
T ss_pred HHHHhhhhhhcCc--------------------------------------cHHHHHHHHHHcCCchhcCCCch-----h
Confidence 9999875432100 01134668899999887776554 6
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ . +.+|+.++|..+++.+++|+|++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-Q-GKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998764 3 44555577888888899999999999997
Q ss_pred E
Q 000971 404 V 404 (1206)
Q Consensus 404 v 404 (1206)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=353.48 Aligned_cols=210 Identities=26% Similarity=0.396 Sum_probs=177.5
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+|+|+. ..+.+|+|+|++|+|||.+||+||||||||||+++|+|...+ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 46999999999862 124599999999999999999999999999999999998774 47999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.+ ..+++.+|||+|++.+++ .|++||+.++. + +.+ ++.++++++..++.+.. |+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 653 456788999999998885 69999997642 1 222 33478888888887654 4445544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
..+||||||||++|||||+++|+||+||||||+||+.++..|++.|++ .++|+|+++|+++ ....+|+|++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999986 4899999999986 4677999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 799999984
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=329.62 Aligned_cols=205 Identities=23% Similarity=0.351 Sum_probs=169.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC----------------------
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF---------------------- 222 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~---------------------- 222 (1206)
..+|+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+....
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35899999999999999999999999999999999999987 89999998764210
Q ss_pred -----CccceEEEecCCC-CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHH
Q 000971 223 -----VPERTAAYISQHD-NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEAN 296 (1206)
Q Consensus 223 -----~~~~~~~yv~Q~d-~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~ 296 (1206)
..++.++||+|++ ..+...||+|||.|+....+... .+..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHH
Confidence 1135799999985 34556799999998754322100 0112
Q ss_pred HHHHHHHHHcCCc-ccccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 000971 297 VITDYYLKVLGLE-VCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG 375 (1206)
Q Consensus 297 ~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~ 375 (1206)
..++.+++.+||+ +..+.. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-G 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C
Confidence 3466789999996 555544 457999999999999999999999999999999999999999999998763 3 4
Q ss_pred eEEEEEecCchhHHhhcCeEEEEcCCeEEEecChHHHH
Q 000971 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 376 t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~ 413 (1206)
.+|+.++|+.+++.+.+|+|++|++|++++.|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 55666888999999999999999999999999998864
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=323.78 Aligned_cols=211 Identities=27% Similarity=0.420 Sum_probs=163.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehH
Confidence 357888877631 123599999999999999999999999999999999998763 4799999998653
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-C-----CCCCC
Q 000971 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-G-----LPGVS 979 (1206)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-g-----~~~~~ 979 (1206)
. ..+++.+||++|++.+++ .||.||+.+... ..... .+.+.++..++.+..+.+. | ...+.
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 137 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSME----RVIEAAKLAGAHDFISELPEGYDTIVGEQGA 137 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHH----HHHHHHHHcCcHHHHHhCcccccchhhcCCC
Confidence 2 234567999999987764 699999977431 11111 1233333333333222110 0 01246
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
.|||||||||+|||+|+.+|++|+|||||+|||+.+...+.+.|++++ +|+|||+++|++. ++ ..+|++++|++ |+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-GR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-CE
Confidence 899999999999999999999999999999999999999999999986 4899999999987 45 56999999985 78
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|+.
T Consensus 214 i~~~~~~ 220 (237)
T cd03252 214 IVEQGSH 220 (237)
T ss_pred EEEEcCH
Confidence 9998874
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=352.94 Aligned_cols=211 Identities=21% Similarity=0.311 Sum_probs=181.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++ ++.+|+||||+|++|+++||+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999998874 24699999999999999999999999999999999998663 479999999875
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
... . .++.+||++|++.+++.+||+||+.|... . ....++.+.++++.++|.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 421 1 12458999999999999999999987531 1 1233456889999999988777764 47999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
||||||+||++|+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|++. .+...||++++|.+ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999987 57788999999986 789999
Q ss_pred cCCC
Q 000971 1064 GPLG 1067 (1206)
Q Consensus 1064 g~~~ 1067 (1206)
|+..
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 9864
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=324.97 Aligned_cols=216 Identities=25% Similarity=0.377 Sum_probs=175.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCC-CCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHD-NHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1206)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 35899999999999999999999999999999999999987 9999999999865432 35799999986 36778
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||.||+.|+....+... .+....++++++.+||.+..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~--- 139 (279)
T PRK13635 97 ATVQDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNREPH--- 139 (279)
T ss_pred ccHHHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCcc---
Confidence 899999998654321100 0112346778999999887776654
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++... +++|+.++|..+++. .+|+|++|++
T Consensus 140 --~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~-~~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 140 --RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK-GITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 699999999999999999999999999999999999999999999886533 455555667777775 5999999999
Q ss_pred CeEEEecChHHHHH---HHHhcCCCCC
Q 000971 401 GQIVYQGPRELVLE---FFESMGFKCP 424 (1206)
Q Consensus 401 G~iv~~G~~~~~~~---~f~~~G~~cp 424 (1206)
|++++.|+.+++.. .+...|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999887653 3344455443
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=370.06 Aligned_cols=209 Identities=27% Similarity=0.386 Sum_probs=178.4
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+|+|+. ..+.+|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 46999999999851 124699999999999999999999999999999999998774 48999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.+ ..+++.+|||+|++.+++ -|++||+.++. + .+ ++.++++++..++.+.. |+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 654 456788999999999876 59999998752 1 22 23478899999987654 4455544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|+|++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 3689999999999999999999999999999999999999999999876 689999999985 4677999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 660 -G~iv~~G~~ 668 (686)
T TIGR03797 660 -GRVVQQGTY 668 (686)
T ss_pred -CEEEEECCH
Confidence 799999984
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=322.03 Aligned_cols=224 Identities=25% Similarity=0.330 Sum_probs=179.7
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.+.... ..+. ..++.+|+|+||+|++|++++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSGK-HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---cccc-cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 67889988774100 0000 0125699999999999999999999999999999999997653 4899999998654
Q ss_pred cc------cccceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCC
Q 000971 909 QE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 979 (1206)
Q Consensus 909 ~~------~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~ 979 (1206)
.. ..++.++|++|++ .+.+..|+.|++.+..... ......+....++++++.+++. ...+.. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 21 2356799999997 3567799999987643211 1223444556789999999996 455655 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
.||+|||||++||++|+.+|+||+|||||+|||+.+...+.+.|+++.++ |.|||+++|++. ++.+.+|++++|.+ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999987 57778999999985 7
Q ss_pred EEEEEcCCC
Q 000971 1059 QEIYVGPLG 1067 (1206)
Q Consensus 1059 ~~~~~g~~~ 1067 (1206)
++++.|+..
T Consensus 229 ~i~~~g~~~ 237 (268)
T PRK10419 229 QIVETQPVG 237 (268)
T ss_pred EEeeeCChh
Confidence 999999864
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=322.57 Aligned_cols=213 Identities=23% Similarity=0.291 Sum_probs=174.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC---CeeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 904 (1206)
.+.++|+++.+. ++.+|+|+||.|++|+++||+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 589999998873 24699999999999999999999999999999999997542 13479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 975 (1206)
.++.. ..+++.++|++|++.+++. ||.||+.+....+. ... ..++.++++++.++|.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999887775 99999987654331 122 23456889999999853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEE-EE
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELF-LM 1054 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~-ll 1054 (1206)
+..||||||||++||++|+.+|+||||||||+|||+.+...+.+.|+++++ ++|||+++|++. .+...+|+++ +|
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 457999999999999999999999999999999999999999999999976 489999999987 5777899976 55
Q ss_pred ecCcEEEEEcCC
Q 000971 1055 KRGGQEIYVGPL 1066 (1206)
Q Consensus 1055 ~~gg~~~~~g~~ 1066 (1206)
+ .|+++..|+.
T Consensus 254 ~-~G~i~~~g~~ 264 (285)
T PRK14254 254 T-GGELVEFDDT 264 (285)
T ss_pred e-CCEEEEeCCH
Confidence 6 4789988874
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=326.93 Aligned_cols=205 Identities=20% Similarity=0.286 Sum_probs=169.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-------ccceEEEecCCC--
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHD-- 235 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d-- 235 (1206)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999987 999999999885421 235799999985
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccc
Q 000971 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADT 314 (1206)
Q Consensus 236 ~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1206)
.+++ .||.||+.|+....+... .+....++.+++.+||. +..++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMNL----------------------------------DEVKNYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhC
Confidence 3454 599999998643221100 01122356788999996 55654
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
. ++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|..+++.+++|+
T Consensus 142 ~-----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 142 S-----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred C-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCE
Confidence 4 4579999999999999999999999999999999999999999999998653 356666688888899999999
Q ss_pred EEEEcCCeEEEecChHHHH
Q 000971 395 IILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1206)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=312.66 Aligned_cols=223 Identities=25% Similarity=0.343 Sum_probs=193.4
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHD 235 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (1206)
....-++|+|+.|+.||+..|||=||||||||+++|.++.+|+ +|+|.++|.++..+.. ++.+++|+|..
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 3456789999999999999999999999999999999999998 9999999999876654 25799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccc
Q 000971 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1206)
Q Consensus 236 ~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1206)
.++|+.||.||..|+.+.+|+... +.+.++.+.|+..||+..++..
T Consensus 116 aLlPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~y 161 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKY 161 (386)
T ss_pred ccccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcC
Confidence 999999999999999998886421 2334567889999999988865
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 316 vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
+ ..||||+||||.+||||+.+|+||+||||+|+|||--+.++.+-|.++-...+ .||+.++|+.+|++++.|+|
T Consensus 162 p-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~-KTIvFitHDLdEAlriG~rI 235 (386)
T COG4175 162 P-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK-KTIVFITHDLDEALRIGDRI 235 (386)
T ss_pred c-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC-CeEEEEecCHHHHHhccceE
Confidence 4 47999999999999999999999999999999999999999988877766554 55666999999999999999
Q ss_pred EEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhh
Q 000971 396 ILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v 436 (1206)
.+|.+|+||..|++++++. .|...-+++|...+
T Consensus 236 aimkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 236 AIMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EEecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 9999999999999999873 45555566666554
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=314.27 Aligned_cols=231 Identities=26% Similarity=0.333 Sum_probs=188.7
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCeeCCCCCc-------cceEEEecCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD-S-SLKVSGRVTYNGHDMGEFVP-------ERTAAYISQH 234 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~-~-~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~ 234 (1206)
...+++||||.+++||+++|+|.|||||||+.++|.|+++ + ....+|+|.|+|.++-.+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999998 4 33467899999998765543 2479999999
Q ss_pred C--CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc
Q 000971 235 D--NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA 312 (1206)
Q Consensus 235 d--~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1206)
+ .+.|.+||.+.+.-..+.+.... ...++...+.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 4 67899999998876554321100 0112344567889999998643
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhc
Q 000971 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1206)
Q Consensus 313 dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~f 392 (1206)
. +-+.+...|||||||||.||.||+.+|++|+.|||||+||..+..+|++.|+++.+ ..+++++.|+|+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 2 34567889999999999999999999999999999999999999999999999987 56788888999999999999
Q ss_pred CeEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChhHHHHhhc
Q 000971 393 DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT 437 (1206)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~~~f~~~G~~cp~~~~~adfl~~v~ 437 (1206)
|+|+||+.|+||+.|+.+++. ..|.|.-+...+..+.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~--------~~P~HPYT~~Ll~s~P 258 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF--------KNPKHPYTRGLLNSLP 258 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh--------cCCCChHHHHHHHhCc
Confidence 999999999999999999874 3455544444444433
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=352.02 Aligned_cols=216 Identities=28% Similarity=0.328 Sum_probs=181.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|+++.++ ++.+|+||||++++|++++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 378899998874 24699999999999999999999999999999999998653 479999999875
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 908 KQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
.. ..+++.+||++|++.+++.+||.||+.+....+........+.++.++++++.++|.+..+..+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 32 1235679999999988999999999988532111111223444567899999999987766653 57999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
|||||++||++|+.+|+||||||||+|||+.+...+++.|++++++|+|||+++|++. ++...+|++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999987 57788999999986 688776
Q ss_pred cC
Q 000971 1064 GP 1065 (1206)
Q Consensus 1064 g~ 1065 (1206)
++
T Consensus 222 ~~ 223 (501)
T PRK11288 222 FD 223 (501)
T ss_pred cC
Confidence 65
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=313.95 Aligned_cols=197 Identities=31% Similarity=0.448 Sum_probs=166.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1206)
.++|+|+|+.+++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 36999999999999 99999999999999999999999987 999999998875432 1357999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 89 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 129 (211)
T cd03264 89 VREFLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKKIG----- 129 (211)
T ss_pred HHHHHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCchh-----
Confidence 9999998654321100 0012235678899999887776554
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|++++. + ++|+.++|+.+++.+++|++++|++|+
T Consensus 130 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998753 3 566668888888889999999999999
Q ss_pred EEEec
Q 000971 403 IVYQG 407 (1206)
Q Consensus 403 iv~~G 407 (1206)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=322.41 Aligned_cols=215 Identities=19% Similarity=0.235 Sum_probs=175.3
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITIS 903 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~ 903 (1206)
..+.++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|...+. +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3689999998874 246999999999999999999999999999999999975321 247999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccC
Q 000971 904 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVG 974 (1206)
Q Consensus 904 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g 974 (1206)
|.++.. ..+++.++|++|++.+++. ||.||+.+....+. .. ...++.+.++++.+++.. ..+..
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 158 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK-- 158 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC--
Confidence 987531 2345679999999887764 99999987643321 11 122345677888888743 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEE
Q 000971 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1206)
Q Consensus 975 ~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll 1054 (1206)
+..|||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|
T Consensus 159 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 233 (274)
T PRK14265 159 ---GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFF 233 (274)
T ss_pred ---cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999997 588899999999
Q ss_pred e--------cCcEEEEEcCC
Q 000971 1055 K--------RGGQEIYVGPL 1066 (1206)
Q Consensus 1055 ~--------~gg~~~~~g~~ 1066 (1206)
+ +.|++++.|+.
T Consensus 234 ~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 234 NTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred ecccccccccCceEEEeCCH
Confidence 7 25899999986
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=318.25 Aligned_cols=220 Identities=24% Similarity=0.296 Sum_probs=176.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++ ++.+|+||||++++||++||+|+||||||||+++|+|.....+..|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478999998773 2369999999999999999999999999999999999621113579999999875
Q ss_pred Ccc---cccc-eEEEeecCCCCCCCCCHHHHHHHhhhhcCC----CCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 000971 908 KQE---TFAR-ISGYCEQNDIHSPFVTVYESLLYSAWLRLP----PEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 978 (1206)
Q Consensus 908 ~~~---~~~~-~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~ 978 (1206)
... ..++ .++|++|++.+++.+|+.+++.+....... ......+..+.+.++++.+++. ...+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 1222 478999999999999999998765332110 0112223345678899999997 35555432
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHh-cCeEEEEecC
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRG 1057 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~-~d~v~ll~~g 1057 (1206)
..||||||||++||+||+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-
Confidence 259999999999999999999999999999999999999999999998877999999999986 35454 799999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 799999985
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=315.73 Aligned_cols=202 Identities=26% Similarity=0.311 Sum_probs=166.9
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC--ccceEEEec-CCCCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYIS-QHDNHIG 239 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~-Q~d~~~~ 239 (1206)
..+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.+..... .++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 4467999999999999999999999999999999999999987 999999998754321 235789997 5567788
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
.+||+|++.+.....+... .+....++.+++.+||++..++.++
T Consensus 109 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-- 152 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPP----------------------------------ARFKKRLDELSELLDLEELLDTPVR-- 152 (236)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh--
Confidence 9999999988654322100 0111235678889999988887665
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++.. +.+|+.++|..+++.+++|++++|.
T Consensus 153 ---~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 153 ---QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER-GTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 699999999999999999999999999999999999999999999886533 4455557788888899999999999
Q ss_pred CCeEEEec
Q 000971 400 DGQIVYQG 407 (1206)
Q Consensus 400 ~G~iv~~G 407 (1206)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=324.45 Aligned_cols=210 Identities=20% Similarity=0.293 Sum_probs=174.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.|+|+++.++. +...+|+||||.|++||+++|+||||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999998842 12359999999999999999999999999999999999864 369999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCC------CCC
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL------PGV 978 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~------~~~ 978 (1206)
.. ...++.++||+|++.+++ .|++||+.+.. ... ++.++++++.+||.+..+..++. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 234667999999999887 59999995321 111 23478889999998777665431 234
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..||+|||||++|||||+.+|+||+|||||++||+.+...+++.|+++. .++|||+++|+++ .+ ..+|++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999875 4899999999985 34 45999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
+++++|++
T Consensus 213 ~i~~~g~~ 220 (275)
T cd03289 213 KVRQYDSI 220 (275)
T ss_pred eEeecCCH
Confidence 99999986
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=321.39 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=168.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC-CCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1206)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999987 9999999998864322 457999999963 6778
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.++....+... .+....++++++.+||++..++.+
T Consensus 99 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 140 (271)
T PRK13632 99 ATVEDDIAFGLENKKVPP----------------------------------KKMKDIIDDLAKKVGMEDYLDKEP---- 140 (271)
T ss_pred ccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCc----
Confidence 999999988643211100 011224577889999988777655
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+++.|++++.. ++++|+.++|..+++. .+|+|++|++
T Consensus 141 -~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 141 -QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSE 217 (271)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999988653 3344444556666664 7999999999
Q ss_pred CeEEEecChHHHH
Q 000971 401 GQIVYQGPRELVL 413 (1206)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1206)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999987754
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=322.46 Aligned_cols=215 Identities=21% Similarity=0.227 Sum_probs=174.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--C-CeeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 904 (1206)
.+.++|+++.++ .+.+|+|+|++|++|+++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 589999998874 1359999999999999999999999999999999999754 1 13589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc----cccccccCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK----PLIQSLVGL 975 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~~g~ 975 (1206)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. ..+.+..+..+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87531 234567999999988877 599999988643321 112223345577788877653 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||||||||++||++|+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999987 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |++++.|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 5 789998874
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=316.05 Aligned_cols=209 Identities=22% Similarity=0.364 Sum_probs=170.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEc
Confidence 488999998773 24699999999999999999999999999999999997653 479999999765
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCH
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSg 983 (1206)
.. ..+++.++|++|++.+++ .|++||+.+....+.. . ..++.++++++.+++. ...+.. +..||+
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 224567899999988876 5999999875433211 1 1134578899999996 355555 357999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.++ |.|||+++|+++ .+ +.+|++++|.+.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 899999999986 35 56999999964444444
Q ss_pred Ec
Q 000971 1063 VG 1064 (1206)
Q Consensus 1063 ~g 1064 (1206)
.|
T Consensus 219 ~~ 220 (225)
T PRK10247 219 EA 220 (225)
T ss_pred hh
Confidence 44
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=351.44 Aligned_cols=122 Identities=24% Similarity=0.294 Sum_probs=102.5
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCC---cEEEE
Q 000971 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 1004 (1206)
Q Consensus 929 ~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P---~iL~L 1004 (1206)
+||.|++.|...+.. .....+.|+.+||.. ..++. ...||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 789999888654321 112467899999976 34554 3579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe-----cCcEEEEEcCC
Q 000971 1005 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1066 (1206)
Q Consensus 1005 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~-----~gg~~~~~g~~ 1066 (1206)
||||+|||+.....+++.|+++.+.|.|||+++|++. ....+|+++.|. +||++++.|+.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 9999999999999999999999888999999999985 346799999995 47899999985
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=317.83 Aligned_cols=206 Identities=21% Similarity=0.348 Sum_probs=171.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++..++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999887 9999999998765432 3569999999988999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.+..+....... .+....++.+++.+||++..+..+
T Consensus 93 ~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 135 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLSA---------------------------------EQREDRANELMEEFHIEHLRDSMG---- 135 (241)
T ss_pred CcHHHHHhhhhhcccccCH---------------------------------HHHHHHHHHHHHHcCCHHHhhcch----
Confidence 9999999875432110000 011234567889999987655544
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
+.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+.+.. .+ .+|+.++|...++.+++|+|++|++
T Consensus 136 -~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 136 -QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SG-LGVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEEcCHHHHHHhcCEEEEEeC
Confidence 47999999999999999999999999999999999999999999988754 34 4555577777889999999999999
Q ss_pred CeEEEecChHHHH
Q 000971 401 GQIVYQGPRELVL 413 (1206)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1206)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988763
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=324.55 Aligned_cols=207 Identities=25% Similarity=0.339 Sum_probs=170.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCC--CC---ccceEEEecCCCC-CC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE--FV---PERTAAYISQHDN-HI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~--~~---~~~~~~yv~Q~d~-~~ 238 (1206)
..+|+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .. .++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 35999999999999999999999999999999999999987 9999999998742 11 1357999999863 34
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
...||+||+.++....+... .+....++++++.+||.+..++.+
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 139 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLPE----------------------------------DEVRKRVDNALKRTGIEHLKDKPT-- 139 (283)
T ss_pred ccccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhCCc--
Confidence 56899999988643221100 011224577899999987776554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
+.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++.. +.+|+.++|..+++..+||+|++|
T Consensus 140 ---~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 140 ---HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKEL-GLTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999886533 445566788888888999999999
Q ss_pred cCCeEEEecChHHHHH
Q 000971 399 SDGQIVYQGPRELVLE 414 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1206)
++|++++.|+.+++..
T Consensus 216 ~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 216 KEGRVILQGNPKEVFA 231 (283)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999987653
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=334.53 Aligned_cols=195 Identities=24% Similarity=0.362 Sum_probs=168.9
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC------C-ccceEEEecCCCCCCCCCC
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF------V-PERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~------~-~~~~~~yv~Q~d~~~~~lT 242 (1206)
|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... . .++.++|++|+..++|.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999987 99999999887531 1 2467999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.|+.+.. ....++.+++.+||++..+..+ +
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999999853200 0113567889999987777655 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+.. +++++.++|+..++..++|+|++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI-NIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 799999999999999999999999999999999999999999999886533 4556668888899999999999999999
Q ss_pred EEEecChHHHH
Q 000971 403 IVYQGPRELVL 413 (1206)
Q Consensus 403 iv~~G~~~~~~ 413 (1206)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999874
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=318.37 Aligned_cols=215 Identities=26% Similarity=0.280 Sum_probs=173.8
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc-
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP- 906 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~- 906 (1206)
.+.++||++.++ ...+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccc
Confidence 378899988774 23589999999999999999999999999999999998764 47999999976
Q ss_pred ----CCcc-------cccceEEEeecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccc
Q 000971 907 ----KKQE-------TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSL 972 (1206)
Q Consensus 907 ----~~~~-------~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~ 972 (1206)
+... ..++.++|++|++. +.+.+|+.|++.+..... . .....+..+.++++++.+++. ...++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 3221 11346899999974 345679999986532111 1 011123446788999999996 355555
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeE
Q 000971 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 973 ~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||+++|++. .+...+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998764 899999999986 577789999
Q ss_pred EEEecCcEEEEEcCC
Q 000971 1052 FLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1052 ~ll~~gg~~~~~g~~ 1066 (1206)
++|++ |++++.|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99985 789998874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=328.07 Aligned_cols=207 Identities=20% Similarity=0.243 Sum_probs=174.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCC--C
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHD--N 236 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d--~ 236 (1206)
+.+|+|||+.|++||+++|+|+||||||||+++|+|.++++ +|+|.++|.++..... ++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 57999999999999999999999999999999999999886 9999999999865432 35799999997 5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc-ccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADTM 315 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1206)
+.|.+||.+++.+..+...... ..+....+..+++.+||.. ..+.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~gL~~~~~~~- 150 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLS---------------------------------AAERREKALAMMAKVGLRPEHYDR- 150 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCC---------------------------------HHHHHHHHHHHHHHCCCChHHhcC-
Confidence 8899999999987654321000 0012234677899999963 4554
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 316 vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
.++.|||||||||+||+||+.+|++|++||||+|||..+..+|++.|+++.+. .+++++.++|+...+..++|+|
T Consensus 151 ----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 151 ----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred ----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 44579999999999999999999999999999999999999999999988653 3566777899999999999999
Q ss_pred EEEcCCeEEEecChHHHH
Q 000971 396 ILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1206)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=315.64 Aligned_cols=202 Identities=25% Similarity=0.341 Sum_probs=166.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
.++|+|+|+.+++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 46999999999999999999999999999999999999987 9999999998765432 3469999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-CcccccccccCc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LEVCADTMVGDE 319 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (1206)
+||+||+.++....+.. .....+.+++.++ +.+..++.
T Consensus 90 ~tv~~~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~~l~~~~~~~---- 128 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR-------------------------------------SRKIPDEIYELFPVLKEMLGRR---- 128 (230)
T ss_pred CcHHHHHHHHHHhcCcc-------------------------------------hHHHHHHHHHHHHhHHHHhhCC----
Confidence 99999998865422100 0011234555665 44444444
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
++.|||||||||+||++|+.+|++++|||||+|||+.+..++.+.|+++++. .+++|+.++|..+++..++|+|++|+
T Consensus 129 -~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 129 -GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4579999999999999999999999999999999999999999999987653 34556667788889999999999999
Q ss_pred CCeEEEecChHHH
Q 000971 400 DGQIVYQGPRELV 412 (1206)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1206)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=318.94 Aligned_cols=201 Identities=26% Similarity=0.370 Sum_probs=167.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ...++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 35999999999999999999999999999999999999887 99999999987542 34589999999889999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
||+.+.....+... .+....++.+++.+||.+..+..+ ..|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 129 (255)
T PRK11248 89 DNVAFGLQLAGVEK----------------------------------MQRLEIAHQMLKKVGLEGAEKRYI-----WQL 129 (255)
T ss_pred HHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hhC
Confidence 99988643221100 001123567889999987666544 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc--CCe
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~--~G~ 402 (1206)
||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++... +++|+.++|+..++..+||+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET-GKQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 9999999999999999999999999999999999999999999875433 4555667888889999999999998 599
Q ss_pred EEEecChH
Q 000971 403 IVYQGPRE 410 (1206)
Q Consensus 403 iv~~G~~~ 410 (1206)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99988653
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=320.32 Aligned_cols=218 Identities=19% Similarity=0.248 Sum_probs=174.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC--C-eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--G-YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 904 (1206)
.+.++||++.++ ...+|+|||++|++||++||+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 488999998874 23699999999999999999999999999999999996431 1 2479999999
Q ss_pred ccCC-----cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 000971 905 YPKK-----QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1206)
Q Consensus 905 ~~~~-----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 979 (1206)
.++. ...+++.+||++|++.+++ .|+.||+.+....+. .. ...++.+.++++.+++.+..+..... .+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQ-SGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcC-Ccc
Confidence 8652 1234567999999988877 599999987653321 11 22334577788888875321111111 145
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec---
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR--- 1056 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~--- 1056 (1206)
.||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.||++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999875 589999999987 68899999999982
Q ss_pred -----CcEEEEEcCC
Q 000971 1057 -----GGQEIYVGPL 1066 (1206)
Q Consensus 1057 -----gg~~~~~g~~ 1066 (1206)
.|+++..|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4799999875
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=312.83 Aligned_cols=195 Identities=27% Similarity=0.388 Sum_probs=163.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1206)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999887 9999999998765421 35699999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+.+||+||+.+.....+... .+....++.+++.+||++..++.+
T Consensus 91 ~~~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (214)
T cd03292 91 PDRNVYENVAFALEVTGVPP----------------------------------REIRKRVPAALELVGLSHKHRALP-- 134 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCh--
Confidence 99999999998654322100 001123567888999987776654
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ . +++|+.++|..+++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 135 ---AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-A-GTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998754 3 445666778888888999999999
Q ss_pred cCCeE
Q 000971 399 SDGQI 403 (1206)
Q Consensus 399 ~~G~i 403 (1206)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=301.65 Aligned_cols=168 Identities=28% Similarity=0.415 Sum_probs=149.2
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
.++|+++.++ ...+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccc
Confidence 5788887763 13599999999999999999999999999999999998653 47999999987543
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 910 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 910 --~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
..+++.++|++|++.+++..|+.||+. ||+||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998888899999873 8999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++.+.+|++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877999999999987 577789999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=361.97 Aligned_cols=211 Identities=27% Similarity=0.418 Sum_probs=179.1
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+|.|+. ++.+|+|+||+++|||.+||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEe
Confidence 46999999999862 34699999999999999999999999999999999998774 48999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-------LIQSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~~g~~ 976 (1206)
+.. ..+++.++||+|++.++. -||+||+.|+.. +.++ +.++++++..++.+ -.|+.+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATD----EEIEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccceecCC
Confidence 654 456788999999999987 899999998631 1222 34666766665544 457778743
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+..||||||||++|||||+++|+||+||||||+||+.+...|++.++++. +|+|+|+++|+++. ...+|+|++|++
T Consensus 463 -G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl~~ 538 (567)
T COG1132 463 -GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVLDN 538 (567)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEEEC
Confidence 46899999999999999999999999999999999999999999999876 57999999999863 455999999996
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 539 -G~i~e~G~h 547 (567)
T COG1132 539 -GRIVERGTH 547 (567)
T ss_pred -CEEEEecCH
Confidence 689999985
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=314.09 Aligned_cols=201 Identities=26% Similarity=0.332 Sum_probs=162.8
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCC--CC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHD--NH 237 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d--~~ 237 (1206)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999887 9999999998865431 35799999997 46
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMV 316 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1206)
++.+||+||+.+.....+..... ......++.+++.+||. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKK--------------------------------EARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHH--------------------------------HHHHHHHHHHHHHCCCChhHhhCCc
Confidence 67899999998865432110000 00011124678888985 4555444
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++...+ .+|+.++|..+++..++|+|+
T Consensus 144 -----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 144 -----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEE
Confidence 46999999999999999999999999999999999999999999998865324 455557777888888999999
Q ss_pred EEcCCeEEEec
Q 000971 397 LLSDGQIVYQG 407 (1206)
Q Consensus 397 lL~~G~iv~~G 407 (1206)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=325.31 Aligned_cols=205 Identities=23% Similarity=0.337 Sum_probs=169.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-------ccceEEEecCCCC-
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDN- 236 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~- 236 (1206)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45999999999999999999999999999999999999987 999999999875321 1246999999862
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-cccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTM 315 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1206)
.+..+||+||+.|+....+... .+....++.+++.+||. ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFSE----------------------------------DEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 3446899999998653221100 01122456789999996 455555
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 316 vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
+ +.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.. . +++|+.++|+.+++.++||+|
T Consensus 143 ~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 P-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-A-GHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999998753 3 566666889999999999999
Q ss_pred EEEcCCeEEEecChHHHH
Q 000971 396 ILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1206)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=313.25 Aligned_cols=196 Identities=24% Similarity=0.350 Sum_probs=160.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------c-ceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------E-RTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~-~~~~yv~Q~d~~ 237 (1206)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... + +.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999987 9999999998865432 1 469999999888
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++.+||+||+.+......... .+....+..+++.+||++..+..+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSV----------------------------------KEAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh-
Confidence 999999999998643211000 001123456889999987666554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++..+.| |+.++|...++. .+|+|++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS-FLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHh-hcCEEEE
Confidence 4699999999999999999999999999999999999999999999886533444 555667766664 5799999
Q ss_pred EcCCeEE
Q 000971 398 LSDGQIV 404 (1206)
Q Consensus 398 L~~G~iv 404 (1206)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=350.28 Aligned_cols=206 Identities=25% Similarity=0.318 Sum_probs=174.1
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc----ccccceEEEeecCCCCCCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSPFV 929 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~~~~~~~ 929 (1206)
+.+|+||||++++||++||+||||||||||+++|+|...+ .+|+|.++|.++.. ..+++.+||++|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 4699999999999999999999999999999999998663 47999999987532 12345689999998888899
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000971 930 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1009 (1206)
Q Consensus 930 Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTs 1009 (1206)
||+||+.+..........+.++..+.++++++.+++.+..++.+ ..|||||||||+||++|+.+|++|||||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111111123344567899999999988777764 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCCc
Q 000971 1010 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGR 1068 (1206)
Q Consensus 1010 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~~ 1068 (1206)
|||+.+...+++.|+++++.|.|||+++|++. ++...||++++|++ |+++..|+...
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999888999999999986 57788999999985 79999988643
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=349.11 Aligned_cols=212 Identities=26% Similarity=0.432 Sum_probs=179.4
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+|+|+. ..+.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46999999999852 124599999999999999999999999999999999998774 47999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.+ ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.++++++..++.+.. |+.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA----P-YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC----C-CCC----HHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 654 456788999999998886 59999998742 1 222 33478888888886644 4455554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
..+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|+|+++|+++ ....+|+|++|++
T Consensus 599 -G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 -GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999875 4899999999986 4678999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 799999974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=316.79 Aligned_cols=216 Identities=23% Similarity=0.312 Sum_probs=175.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC--C--eeEEEEEEc
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--G--YITGNITIS 903 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~--~--~~~G~i~i~ 903 (1206)
.+.++++++++. ++.+|+||||++.+||+++|+||||||||||+++|+|...+ | .+.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 378899998764 34699999999999999999999999999999999997543 2 123666666
Q ss_pred CccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccCCC
Q 000971 904 GYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGLP 976 (1206)
Q Consensus 904 g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~~ 976 (1206)
|.+... ..+++.++|++|++.+++.+|++||+.+...... ....++.++.+.++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 665422 2345679999999999999999999988643221 1123344567889999999964 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+..||+|||||++|||+|+.+|++|+|||||+|||..+...+.+.|+++.+ ++|||+++|++. .+...+|++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999864 799999999986 57788999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 228 -g~i~~~g~~ 236 (257)
T PRK14246 228 -GELVEWGSS 236 (257)
T ss_pred -CEEEEECCH
Confidence 799988875
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=319.41 Aligned_cols=194 Identities=21% Similarity=0.297 Sum_probs=165.0
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHH
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~--~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEA--REDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHh--hCceEEEecCccCCCCCcHHH
Confidence 5899999999999999999999999999999999999987 99999999876432 457999999998899999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
|+.+... . . ....++.+++.+||.+..+..+ ..||
T Consensus 101 nl~~~~~--~---~-----------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~LS 135 (257)
T PRK11247 101 NVGLGLK--G---Q-----------------------------------WRDAALQALAAVGLADRANEWP-----AALS 135 (257)
T ss_pred HHHhccc--c---h-----------------------------------HHHHHHHHHHHcCChhHhcCCh-----hhCC
Confidence 9987421 0 0 0012456788999987666544 4799
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~ 405 (1206)
|||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++....+ .+|+.++|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG-FTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999998765334 455667888888889999999999999999
Q ss_pred ecChH
Q 000971 406 QGPRE 410 (1206)
Q Consensus 406 ~G~~~ 410 (1206)
.|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=311.72 Aligned_cols=194 Identities=30% Similarity=0.411 Sum_probs=162.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1206)
..+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 45999999999999999999999999999999999999887 9999999998865432 35799999999889
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+.+||+||+.++....+... ......++.+++.+||.+..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFP-- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 99999999998754321100 001123567889999987666554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. .+ .+|+.++|..+++..+||++++|
T Consensus 136 ---~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 136 ---EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RG-TTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred ---hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEEEEe
Confidence 46999999999999999999999999999999999999999999998754 34 45666778888999999999999
Q ss_pred cCCe
Q 000971 399 SDGQ 402 (1206)
Q Consensus 399 ~~G~ 402 (1206)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=318.39 Aligned_cols=206 Identities=32% Similarity=0.488 Sum_probs=171.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
..+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35999999999999999999999999999999999999887 9999999998765432 25689999998888889
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.++........ .+....++.+++.+||.+..++.++
T Consensus 92 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 133 (258)
T PRK13548 92 TVEEVVAMGRAPHGLSR----------------------------------AEDDALVAAALAQVDLAHLAGRDYP---- 133 (258)
T ss_pred CHHHHHHhhhcccCCCc----------------------------------HHHHHHHHHHHHHcCCHhHhcCCcc----
Confidence 99999988542111000 0011235678899999876666554
Q ss_pred ccCChhhhhHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 322 RGISGGERKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~------~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
.|||||||||+||++|+ .+|++++|||||+|||+.+...+.+.|+++.+..+ .+|+.++|+..++.+++|+|
T Consensus 134 -~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 134 -QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG-LAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhcCEE
Confidence 69999999999999999 59999999999999999999999999998863334 45666778888899999999
Q ss_pred EEEcCCeEEEecChHHHH
Q 000971 396 ILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1206)
++|++|++++.|+++++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987664
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=310.49 Aligned_cols=197 Identities=28% Similarity=0.375 Sum_probs=165.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCc
Confidence 67888887763 24699999999999999999999999999999999997653 4799999997643
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHH
Q 000971 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1206)
Q Consensus 909 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqr 988 (1206)
...+++.++|++|++.+++.+||.||+.+....+. .. .+.+.++++.++|.+..+..+ ..||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22255678999999888888999999987543321 11 234789999999987666653 4799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 989 l~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++.. |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeec
Confidence 99999999999999999999999999999999999998878999999999986 3443 8888774
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=360.44 Aligned_cols=210 Identities=21% Similarity=0.342 Sum_probs=179.3
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+|++|.|+. ++.+|+|+|++++|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 46999999999851 13599999999999999999999999999999999998875 47999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccc-------cccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ-------SLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~~g~~ 976 (1206)
+.+ ..+++.++||+|++.+++. |++||+.++. +.+ ++.++++++.+|+.+..+ +.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 653 4567889999999999875 9999998752 122 234888999999876544 445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
..+||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++.+ ++|||+++|+++ ....+|+|++|++
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~ 549 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR 549 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999998754 699999999985 5677999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 550 -G~i~~~G~~ 558 (592)
T PRK10790 550 -GQAVEQGTH 558 (592)
T ss_pred -CEEEEEcCH
Confidence 799999985
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=316.65 Aligned_cols=219 Identities=21% Similarity=0.279 Sum_probs=176.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--C-CeeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 904 (1206)
.+.++||++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 377899988763 2469999999999999999999999999999999999643 1 12479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCC
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 979 (1206)
.++.. ...++.++|++|++.+++. |+.||+.+...... ..+.+...+.+.++++.+++.+........ .+.
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-Ccc
Confidence 87532 1345679999999888874 99999987643221 112333456788999999986432222221 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
.||+|||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++++ |+|||+++|++. ++...+|++++|.+ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999854 899999999987 68888999999985 79
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 9999874
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=315.77 Aligned_cols=203 Identities=25% Similarity=0.390 Sum_probs=166.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 35999999999999999999999999999999999999987 9999999998765432 3469999999989999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc-CCcccccccccCc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLEVCADTMVGDE 319 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 319 (1206)
+||+||+.++..... . + + ....++.+++.+ +|.+..++.
T Consensus 95 ~tv~~~l~~~~~~~~---~-~---~-----------------------------~~~~~~~~l~~~~~l~~~~~~~---- 134 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R-D---Q-----------------------------FQERIKWVYELFPRLHERRIQR---- 134 (237)
T ss_pred CcHHHHHHHhhhccC---h-h---H-----------------------------HHHHHHHHHHHHHHHHHHHhCc----
Confidence 999999988542110 0 0 0 001233445555 465544443
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
+..|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.. .+. +|+.++|..+++.+++|++++|+
T Consensus 135 -~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~-tiii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 135 -AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGM-TIFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCC-EEEEEeCcHHHHHhhCCEEEEEe
Confidence 347999999999999999999999999999999999999999999998764 344 45557788889999999999999
Q ss_pred CCeEEEecChHHHH
Q 000971 400 DGQIVYQGPRELVL 413 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1206)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988764
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=315.44 Aligned_cols=219 Identities=26% Similarity=0.303 Sum_probs=171.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.++ ++.+|+|+|+.|++|+++||+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56889988774 23599999999999999999999999999999999997421135799999998753
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHhh-hhcC--C-CCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCC
Q 000971 909 QE---T-FARISGYCEQNDIHSPFVTVYESLLYSA-WLRL--P-PEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 979 (1206)
Q Consensus 909 ~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~a-~lr~--~-~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~ 979 (1206)
.. . .++.++|++|++.+++.+|+.+++.+.. .++. . ..........+++++++.+++. +..+..+ ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 21 1 2346899999988888888777654321 1110 0 0112223355678899999995 3444442 13
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHh-cCeEEEEecCc
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRGG 1058 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~-~d~v~ll~~gg 1058 (1206)
.||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++.|+|||+++|++. .+... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999999877899999999986 35454 899999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 89999875
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=316.16 Aligned_cols=206 Identities=24% Similarity=0.391 Sum_probs=169.0
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCeeCCCCC-----ccceEEEecCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFV-----PERTAAYISQHDNHI 238 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~~ 238 (1206)
.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 5899999999999999999999999999999999999753 123899999999876421 135799999998888
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc----ccccc
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE----VCADT 314 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1206)
+ +||+||+.+.....+.... .+....++.+++.+||. +..+.
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 8 9999999986543210000 01112356788999997 55554
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
. ++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. + .+|+.++|...++.+++|+
T Consensus 141 ~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 S-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 4 457999999999999999999999999999999999999999999998754 3 4566678888889999999
Q ss_pred EEEEcCCeEEEecChHHHH
Q 000971 395 IILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1206)
|++|++|++++.|+++++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=314.63 Aligned_cols=210 Identities=25% Similarity=0.398 Sum_probs=169.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++. ..+.+|+|+||+|++|++++|+||||||||||+++|+|...+ ..|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 68 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDI 68 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEh
Confidence 3678888877631 123599999999999999999999999999999999998653 479999999865
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccC------CCCC
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG------LPGV 978 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g------~~~~ 978 (1206)
.. ...++.++|++|++.+++ .||.|++.+... ... ...+.++++.+++.+..+..+. ....
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 223557899999988776 699999976421 111 2246678888999877666431 1123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|++. . .+.+|++++|++ |
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g 214 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-G 214 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-C
Confidence 589999999999999999999999999999999999999999999998764 89999999986 3 478999999986 6
Q ss_pred EEEEEc
Q 000971 1059 QEIYVG 1064 (1206)
Q Consensus 1059 ~~~~~g 1064 (1206)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 777654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=331.35 Aligned_cols=199 Identities=24% Similarity=0.402 Sum_probs=169.6
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-------ccceEEEecCCCCCCCCCC
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1206)
|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 899999999999999999999999999999999987 999999999875321 2457999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.|+.+... . .+....++.+++.+||++..+..+ .
T Consensus 92 v~enl~~~~~~~~--~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR--P----------------------------------SERRISFERVIELLGIGHLLGRLP-----G 130 (354)
T ss_pred HHHHHHHHhhccC--h----------------------------------hHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999998653110 0 001123567889999988777655 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++.+.. +++|+.++|..+++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999986533 4556667888889999999999999999
Q ss_pred EEEecChHHHH
Q 000971 403 IVYQGPRELVL 413 (1206)
Q Consensus 403 iv~~G~~~~~~ 413 (1206)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=314.10 Aligned_cols=201 Identities=26% Similarity=0.331 Sum_probs=165.9
Q ss_pred eeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHH
Q 000971 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247 (1206)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl 247 (1206)
|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999987 9999999998865433 248999999999999999999
Q ss_pred HHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChh
Q 000971 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327 (1206)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1206)
.+........ ... .+....++.+++.+||++..++.++ .||||
T Consensus 76 ~~~~~~~~~~--------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--------LSK------------------------SERRAIVEEHIALVGLTEAADKRPG-----QLSGG 118 (230)
T ss_pred HHHHHhcccC--------CCH------------------------HHHHHHHHHHHHHcCCHHHHcCChh-----hCCHH
Confidence 8863210000 000 0112235678899999877776554 69999
Q ss_pred hhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEec
Q 000971 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1206)
Q Consensus 328 qkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G 407 (1206)
|||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++.. +.+|+.++|..+++.+++|+|++|++|++++.|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH-RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 9999999999999999999999999999999999999999876533 445566788888899999999999999999988
Q ss_pred ChHH
Q 000971 408 PREL 411 (1206)
Q Consensus 408 ~~~~ 411 (1206)
+..+
T Consensus 198 ~~~~ 201 (230)
T TIGR01184 198 QILE 201 (230)
T ss_pred Ccee
Confidence 6543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=306.21 Aligned_cols=178 Identities=26% Similarity=0.327 Sum_probs=150.9
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-----ccccceEEEeecCCC-CCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-----ETFARISGYCEQNDI-HSP 927 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~q~~~-~~~ 927 (1206)
+.+|++||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 4699999999999999999999999999999999998763 48999999987531 123567899999973 233
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000971 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1007 (1206)
Q Consensus 928 ~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEP 1007 (1206)
..||+||+.+..... ..+.++..+.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 479999998865332 1233444567899999999988777764 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000971 1008 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 1008 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
|+|||+.+...+.+.|++++++|+|||+++|++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=317.00 Aligned_cols=197 Identities=25% Similarity=0.372 Sum_probs=168.4
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTVY 932 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~ 932 (1206)
+|+||||++++|++++|+||||||||||+++|+|... .+|+|.++|.+... ..+++.+||++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999763 27999999987542 22345689999998888889999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 000971 933 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1005 (1206)
Q Consensus 933 e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~-------~P~iL~LD 1005 (1206)
||+.+.... ....+...+.++++++.++|.+..++.+ ..||+|||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1222333556889999999987777663 5799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1006 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|||+|||+.++..+.+.|++++++|.|||+++|+++ ++...+|++++|++ |++++.|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877999999999986 57889999999985 789998875
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=314.97 Aligned_cols=211 Identities=22% Similarity=0.346 Sum_probs=171.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 36999999999999999999999999999999999999887 9999999998765432 2469999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.++..... ..+....... ..+....++++++.+||++..++.++
T Consensus 92 ~tv~~nl~~~~~~~~--~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (242)
T TIGR03411 92 LTVFENLELALPRDK--SVFASLFFRL------------------------SAEEKDRIEEVLETIGLADEADRLAG--- 142 (242)
T ss_pred CCHHHHHHHhhhccc--cccccccccc------------------------HHHHHHHHHHHHHHcCCchhhcCChh---
Confidence 999999998643110 0000000000 00112346778999999877766554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.. + .+|+.++|..+++.++||+|++|++
T Consensus 143 --~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 143 --LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999998753 3 4566678888899999999999999
Q ss_pred CeEEEecChHHH
Q 000971 401 GQIVYQGPRELV 412 (1206)
Q Consensus 401 G~iv~~G~~~~~ 412 (1206)
|++++.|+.+++
T Consensus 218 g~~~~~~~~~~~ 229 (242)
T TIGR03411 218 GSVLAEGSLDQV 229 (242)
T ss_pred CeEEeeCCHHHH
Confidence 999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=313.41 Aligned_cols=204 Identities=23% Similarity=0.304 Sum_probs=167.2
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CCCceeEEEECCeeCCCCCcc-ceEEEecCCCC--CCC
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS----SLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDN--HIG 239 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~----~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~--~~~ 239 (1206)
+|+|+|+.|++|++++|+|||||||||||++|+|.++| + +|+|.++|.++...... +.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999987 5 99999999987654322 57999999974 557
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc---cccccc
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV---CADTMV 316 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~v 316 (1206)
.+|+.|++.+.....+... .+....++.+++.+||++ ..+.
T Consensus 78 ~~t~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLS----------------------------------KQARALILEALEAVGLPDPEEVLKK-- 121 (230)
T ss_pred ccCHHHHHHHHHHHcCccH----------------------------------HHHHHHHHHHHHHcCCCchHHHHhC--
Confidence 7899999987543211000 001223567899999973 3343
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
.+..|||||||||+||++++.+|+|++|||||+|||..+...+.+.|+++... .+++|+.++|..+++..++|+|+
T Consensus 122 ---~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~ 197 (230)
T TIGR02770 122 ---YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVA 197 (230)
T ss_pred ---ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 34579999999999999999999999999999999999999999999987653 34556667888889999999999
Q ss_pred EEcCCeEEEecChHHHH
Q 000971 397 LLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1206)
+|++|+++..|+++++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=321.19 Aligned_cols=204 Identities=27% Similarity=0.391 Sum_probs=169.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCC-CCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDN-HIG 239 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~-~~~ 239 (1206)
..+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 34999999999999999999999999999999999999987 9999999998865432 356999999865 467
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
.+||+||+.|.....+.. + .+....++.+++.+||.+..++.++
T Consensus 92 ~~tv~enl~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-- 135 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLP-P---------------------------------IEIRKRVDRALAEIGLEKYRHRSPK-- 135 (274)
T ss_pred cchHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCHHHhcCCcc--
Confidence 789999999865432110 0 0112245678899999887776554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++ ..+|+|++|+
T Consensus 136 ---~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~~tH~~~~~-~~~d~v~~l~ 209 (274)
T PRK13644 136 ---TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-K-GKTIVYITHNLEEL-HDADRIIVMD 209 (274)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHH-hhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999998764 3 45555577777777 5699999999
Q ss_pred CCeEEEecChHHHH
Q 000971 400 DGQIVYQGPRELVL 413 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1206)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988764
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=319.09 Aligned_cols=209 Identities=25% Similarity=0.330 Sum_probs=164.2
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
+++|+++.++. .+..+|+|+||++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhh
Confidence 57788877641 113599999999999999999999999999999999998763 47999999976532
Q ss_pred ---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHH-----HHHHHHHHHc--CCccccccccCCCCCC
Q 000971 910 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRK-----MFIEEVMELV--ELKPLIQSLVGLPGVS 979 (1206)
Q Consensus 910 ---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~~g~~~~~ 979 (1206)
...++.++|++|++.+++ .||+||+.+.... ....... ..+++.++.+ ++....+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 234567899999988776 6999999875321 1111111 1234444444 444444433 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
.||+|||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++. +|.|||+++|++. ++. .+|++++|++ |+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~v~~l~~-G~ 213 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TIE-NADRIVVLED-GK 213 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHh-hCCEEEEecC-Ce
Confidence 799999999999999999999999999999999999999999999986 4899999999986 454 5999999986 68
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|+.
T Consensus 214 i~~~~~~ 220 (234)
T cd03251 214 IVERGTH 220 (234)
T ss_pred EeeeCCH
Confidence 8888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=318.62 Aligned_cols=207 Identities=24% Similarity=0.322 Sum_probs=170.7
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCC--
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHD-- 235 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d-- 235 (1206)
.+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999987 9999999998765432 34699999986
Q ss_pred CCCCCCCHHHHHHHHhhhc-CCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-cccc
Q 000971 236 NHIGEMTVRETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCAD 313 (1206)
Q Consensus 236 ~~~~~lTV~Etl~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~d 313 (1206)
.+++.+||+||+.+..... ... ..+....++.+++.+||. ...+
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~ 145 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTSLD----------------------------------ESEQKARIAELLDMVGLRSEDAD 145 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhh
Confidence 4667899999998754311 000 001122356788999996 5555
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC
Q 000971 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1206)
Q Consensus 314 t~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD 393 (1206)
..+ +.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.... +++|+.++|....+..++|
T Consensus 146 ~~~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d 219 (265)
T TIGR02769 146 KLP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQ 219 (265)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhc
Confidence 444 4799999999999999999999999999999999999999999999876533 4556667888889999999
Q ss_pred eEEEEcCCeEEEecChHHHH
Q 000971 394 DIILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1206)
++++|++|++++.|+.+++.
T Consensus 220 ~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 220 RVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEEeCCEEEEECCHHHHc
Confidence 99999999999999998764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=314.67 Aligned_cols=206 Identities=21% Similarity=0.294 Sum_probs=165.2
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCeeCCCC--C---ccceEEEecCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEF--V---PERTAAYISQHDNHI 238 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~--~~~G~I~~nG~~~~~~--~---~~~~~~yv~Q~d~~~ 238 (1206)
.+|+|+|+.|++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|.++... . .++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 58999999999999999999999999999999999988621 1389999999887421 1 245799999998777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc----ccccc
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE----VCADT 314 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1206)
+ +||+||+.|+....+.... .+....++.+++.+||. +..++
T Consensus 101 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 L-MSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred c-CcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 4 8999999986533211000 00112345567777773 33444
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
. ++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++. .+ ++|+.++|...++.+++|+
T Consensus 147 ~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 N-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--ES-YTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhCCE
Confidence 3 45799999999999999999999999999999999999999999999874 24 5566678888888999999
Q ss_pred EEEEcCCeEEEecChHHHH
Q 000971 395 IILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1206)
|++|++|+++..|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=355.88 Aligned_cols=212 Identities=28% Similarity=0.427 Sum_probs=179.4
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+|.|+. +++.+|+|+|++++||+++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46999999999852 123599999999999999999999999999999999998764 47999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccc------cccCCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ------SLVGLPG 977 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~------~~~g~~~ 977 (1206)
+.+ ..+++.++||+|++.+++ -|++||+.++. + +. .++.++++++.+++.+..+ +.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 654 346778999999998876 59999998753 1 12 2345889999999987643 445543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
...||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +|+|+|+++|+++ ....+|++++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~- 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN- 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-
Confidence 45799999999999999999999999999999999999999999999885 5899999999986 3467999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 549 G~i~~~g~~ 557 (574)
T PRK11160 549 GQIIEQGTH 557 (574)
T ss_pred CeEEEeCCH
Confidence 799999874
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=317.39 Aligned_cols=221 Identities=21% Similarity=0.288 Sum_probs=173.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
.++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999999987 9999999998765432 2348999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.++........ ....... .+..+ ....+....++.+++.+||.+..+..+
T Consensus 95 ~tv~enl~~~~~~~~~~~---~~~~~~~-------~~~~~---------~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 151 (255)
T PRK11300 95 MTVIENLLVAQHQQLKTG---LFSGLLK-------TPAFR---------RAESEALDRAATWLERVGLLEHANRQA---- 151 (255)
T ss_pred CcHHHHHHHhhhccccch---hhhhhcc-------ccccc---------cchhHHHHHHHHHHHhCChhhhhhCCh----
Confidence 999999998643110000 0000000 00000 000011234567889999987666554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
+.|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++.+ ..+++|+.++|..+++.++||++++|++
T Consensus 152 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 152 -GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998765 3245666678888899999999999999
Q ss_pred CeEEEecChHHHH
Q 000971 401 GQIVYQGPRELVL 413 (1206)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1206)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999988653
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=358.37 Aligned_cols=213 Identities=22% Similarity=0.321 Sum_probs=179.3
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+|.++. ..+.+|+|+|++|+||+++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 46999999999852 124699999999999999999999999999999999998774 47999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~ 976 (1206)
..+ ..+++.++||+|++.+++ -|++||+.++. +...+ ++.++++++.+++.+. .|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 653 346778999999998886 69999998752 11122 3347888888887654 35566654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
...||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|||+++|+++ ..+.||+|++|++
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 36799999999999999999999999999999999999999999999874 4799999999985 5778999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 554 -g~i~e~g~~ 562 (582)
T PRK11176 554 -GEIVERGTH 562 (582)
T ss_pred -CEEEEeCCH
Confidence 799999984
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=316.13 Aligned_cols=206 Identities=21% Similarity=0.320 Sum_probs=171.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC----------------ccceE
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV----------------PERTA 228 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~----------------~~~~~ 228 (1206)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 45999999999999999999999999999999999999987 999999999875431 13579
Q ss_pred EEecCCCCCCCCCCHHHHHHHHhhh-cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC
Q 000971 229 AYISQHDNHIGEMTVRETLAFSARC-QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1206)
Q Consensus 229 ~yv~Q~d~~~~~lTV~Etl~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1206)
+|++|++.+++.+||.||+.++... .+... .+....++.+++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR----------------------------------AEAEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcC
Confidence 9999999899999999999885321 11000 001123566789999
Q ss_pred CcccccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchh
Q 000971 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387 (1206)
Q Consensus 308 L~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~ 387 (1206)
|++..+..+ +.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++... .+++++.++|..++
T Consensus 136 l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~ 209 (252)
T TIGR03005 136 LADKADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGF 209 (252)
T ss_pred ChhHhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHH
Confidence 987666543 479999999999999999999999999999999999999999999987653 34566667888888
Q ss_pred HHhhcCeEEEEcCCeEEEecChHHHH
Q 000971 388 TYDLFDDIILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 388 ~~~~fD~vilL~~G~iv~~G~~~~~~ 413 (1206)
+.+++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999987663
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=316.11 Aligned_cols=217 Identities=22% Similarity=0.249 Sum_probs=176.1
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC--C-eeEEEEEE
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--G-YITGNITI 902 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~--~-~~~G~i~i 902 (1206)
+..+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ + +.+|+|.+
T Consensus 14 ~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 34589999998874 23699999999999999999999999999999999997643 1 25899999
Q ss_pred cCccCC-------cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccc
Q 000971 903 SGYPKK-------QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQS 971 (1206)
Q Consensus 903 ~g~~~~-------~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~ 971 (1206)
+|.+.. ...+++.+||++|++.+++. |++||+.+...... .......++.+.++++.+++.+ ..+.
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRLGD 157 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHHhC
Confidence 987642 12345678999999988875 99999987643221 1111223456788888888753 2233
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeE
Q 000971 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 972 ~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
. ...||+|||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++
T Consensus 158 ~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i 230 (265)
T PRK14252 158 L-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYT 230 (265)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEE
Confidence 3 357999999999999999999999999999999999999999999999865 699999999987 577899999
Q ss_pred EEEecCcEEEEEcCC
Q 000971 1052 FLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1052 ~ll~~gg~~~~~g~~ 1066 (1206)
++|++ |+++..|+.
T Consensus 231 ~~l~~-G~i~~~g~~ 244 (265)
T PRK14252 231 AYMYM-GELIEFGAT 244 (265)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 789998874
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=320.19 Aligned_cols=205 Identities=25% Similarity=0.349 Sum_probs=171.1
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC-CCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGEM 241 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1206)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4899999999999999999999999999999999999987 9999999998764322 246899999863 34568
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.+.....+... .+....++.+++.+||.+..++.+.
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 136 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRVPH---- 136 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCcc----
Confidence 99999987653221100 0112245678999999887776654
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|..+++.+.||+|++|++|
T Consensus 137 -~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 137 -HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999988653 2455666788888999999999999999
Q ss_pred eEEEecChHHHH
Q 000971 402 QIVYQGPRELVL 413 (1206)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1206)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998874
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=316.90 Aligned_cols=205 Identities=20% Similarity=0.300 Sum_probs=165.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCeeCCCCC-----ccceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEFV-----PERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~--~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1206)
+.+|+|+|++|++|++++|+|||||||||||++|+|.+++.. ..+|+|.++|.++.... .++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 358999999999999999999999999999999999987410 13899999999875321 13569999999877
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc----cccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE----VCAD 313 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1206)
++ +||+||+.|+.+..+... .+....++.+++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGANK----------------------------------KDLDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcchhhhhc
Confidence 87 899999998654322100 00112356678888884 3334
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC
Q 000971 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1206)
Q Consensus 314 t~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD 393 (1206)
+ .++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|..+++.+++|
T Consensus 150 ~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~-~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 150 S-----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--D-YTIVIVTHNMQQAARISD 221 (258)
T ss_pred C-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHHhCC
Confidence 3 3457999999999999999999999999999999999999999999998742 4 556667888888999999
Q ss_pred eEEEEcCCeEEEecChHHH
Q 000971 394 DIILLSDGQIVYQGPRELV 412 (1206)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~ 412 (1206)
+|++|++|++++.|+++++
T Consensus 222 ~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998876
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=320.25 Aligned_cols=205 Identities=25% Similarity=0.354 Sum_probs=169.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC----ccceEEEecCCCC-CCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV----PERTAAYISQHDN-HIG 239 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~-~~~ 239 (1206)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++++ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999987 999999999886432 2467999999864 344
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
..||.|++.|+....+... .+....++++++.+||....++.++
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-- 143 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAPH-- 143 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCcc--
Confidence 5799999998754222100 0112346778999999887777654
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+.. +++|+.++|...++.. +|++++|+
T Consensus 144 ---~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 144 ---LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKY-GITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHhc-CCEEEEEE
Confidence 699999999999999999999999999999999999999999999886533 4445556777777765 99999999
Q ss_pred CCeEEEecChHHHH
Q 000971 400 DGQIVYQGPRELVL 413 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1206)
+|++++.|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=325.35 Aligned_cols=217 Identities=18% Similarity=0.196 Sum_probs=171.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCeeCCCCCcc-------ceEEEecCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGEFVPE-------RTAAYISQHDN 236 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~-~~~G~I~~nG~~~~~~~~~-------~~~~yv~Q~d~ 236 (1206)
..+|+|||+.|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.|+|.++.....+ +.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 569999999999999999999999999999999999986421 2389999999988654431 36999999875
Q ss_pred --CCCCCCHHHHHHHHhhhcCC-CchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccc
Q 000971 237 --HIGEMTVRETLAFSARCQGV-GSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCAD 313 (1206)
Q Consensus 237 --~~~~lTV~Etl~f~~~~~~~-~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1206)
+.|.+||.+++.+....... +..+ .. ..+....+..+|+.+||.+..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~~-------------~~~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW----------------QR-------------FGWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc----------------cc-------------HHHHHHHHHHHHHHCCCCChHH
Confidence 67899999999864321100 0000 00 0011234567899999975321
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC
Q 000971 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1206)
Q Consensus 314 t~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD 393 (1206)
+-+..+..|||||||||+||+||+.+|++|++||||+|||+.+..++.+.|+++.+. .+.+|+.++|+...+.+++|
T Consensus 151 --~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 151 --AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN-NNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred --HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCC
Confidence 113445689999999999999999999999999999999999999999999998653 35667778999999999999
Q ss_pred eEEEEcCCeEEEecChHHHH
Q 000971 394 DIILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1206)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999988764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=318.37 Aligned_cols=204 Identities=22% Similarity=0.305 Sum_probs=167.8
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC-CCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGEM 241 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1206)
.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999987 9999999998765332 357999999974 68889
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||++|+.|.....+... .+....++.+++.+||.+..++.+
T Consensus 100 ~v~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVPY----------------------------------DEMHRRVSEALKQVDMLERADYEP----- 140 (269)
T ss_pred cHHHHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCc-----
Confidence 99999988654221100 001123567889999987766554
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
+.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++....+.| |+.++|...++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~t-iiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNIT-IISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCchHHhc-CCEEEEEECC
Confidence 4799999999999999999999999999999999999999999999876433444 5556666677765 9999999999
Q ss_pred eEEEecChHHHH
Q 000971 402 QIVYQGPRELVL 413 (1206)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1206)
++++.|+++++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=306.20 Aligned_cols=194 Identities=24% Similarity=0.294 Sum_probs=161.8
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
.++|+++.++ .+.+|+||||.+++|+++||+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEccc
Confidence 5678877663 24699999999999999999999999999999999998653 47999999986532
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 910 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 910 --~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
..+++.++|++|++.+++.+|+.||+.+....+. . + +..+.++++.++|.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2244678999999888888999999987643331 1 1 235788999999988777664 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEE
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~l 1053 (1206)
|++||++|+.+|++|+|||||+|||+.+...+++.|++++++|.|||+++|++. ++ .+++++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~--~~~~~~~ 197 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL-GL--VEARELR 197 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc-cc--cceEEee
Confidence 999999999999999999999999999999999999998778999999999985 22 3466654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=310.72 Aligned_cols=196 Identities=24% Similarity=0.339 Sum_probs=164.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1206)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 46999999999999999999999999999999999999987 9999999998765422 35799999998888
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+.+||+||+.+.....+... .+....++.+++.+||.+..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFP-- 135 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc--
Confidence 99999999998654321100 001123456788999987666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
..|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.. . +++++.++|..+++...+|+|++|
T Consensus 136 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 136 ---IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999998754 3 456666888888999999999999
Q ss_pred cCCeEE
Q 000971 399 SDGQIV 404 (1206)
Q Consensus 399 ~~G~iv 404 (1206)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999975
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=309.14 Aligned_cols=194 Identities=30% Similarity=0.444 Sum_probs=160.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC-CCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1206)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999999887 9999999998765422 357899999864 4678
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.++....+... .+....++.+++.+||++..+..+
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRSP---- 132 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 999999988643221000 001123567888999987666554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. . +++|+.++|..+++..+||+|++|++
T Consensus 133 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 133 -FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-E-GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998765 3 45566678888899999999999999
Q ss_pred Ce
Q 000971 401 GQ 402 (1206)
Q Consensus 401 G~ 402 (1206)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=311.25 Aligned_cols=204 Identities=27% Similarity=0.411 Sum_probs=171.4
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
+|+|+|++|+||++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999987 9999999998865433 357999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
|+.++....+... .+....+..+++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------------------------------KEIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9988643221100 001123456788999987777655 4699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~ 405 (1206)
|||||||+||++++.+|++++|||||+|||..+...+.+.|++++...+. +++.++|..+++.+++|+|++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~-tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV-TVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987653344 55556777788899999999999999999
Q ss_pred ecChHHHH
Q 000971 406 QGPRELVL 413 (1206)
Q Consensus 406 ~G~~~~~~ 413 (1206)
.|+++++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987664
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=285.20 Aligned_cols=205 Identities=26% Similarity=0.365 Sum_probs=177.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+|+|||+.|.+|+.++++||||||||||||+++|..+|. .|+|.+||.+++.- ...-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 56999999999999999999999999999999999999997 99999999988753 33458999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
||+.|+.++.|.... +...++...+...||+...+. ++-.|
T Consensus 93 dNvafgL~l~Gi~k~----------------------------------~R~~~a~q~l~~VgL~~~~~~-----~i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA----------------------------------QRREIAHQMLALVGLEGAEHK-----YIWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHhCccccccc-----ceEee
Confidence 999999998886432 122356778899999987664 45579
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc--CCe
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~--~G~ 402 (1206)
||||||||.|||||+.+|+.|+||||+.+||.-++.++.+.|-++.+..+ ..+..++|..+|..-++++++||+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg-k~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG-KQVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC-CeEEEEeccHHHHHhhhheeEEecCCCce
Confidence 99999999999999999999999999999999999999998888776554 445558999999999999999998 479
Q ss_pred EEEecChHHHHH
Q 000971 403 IVYQGPRELVLE 414 (1206)
Q Consensus 403 iv~~G~~~~~~~ 414 (1206)
|+..-|++-...
T Consensus 213 vv~~~~~df~rR 224 (259)
T COG4525 213 VVERLPLDFARR 224 (259)
T ss_pred eeEecCCCHHHH
Confidence 998877664433
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=317.85 Aligned_cols=204 Identities=27% Similarity=0.380 Sum_probs=169.3
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-----ccceEEEecCCCC-CCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDN-HIG 239 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~-~~~ 239 (1206)
.+|+|+|++|++||+++|+||||||||||+++|+|.++++ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 5899999999999999999999999999999999999987 999999999874211 1357999999863 344
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
.+||+||+.|+....+.. + .+....+..+++.+||.+..++.++
T Consensus 93 ~~tv~e~i~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 136 (275)
T PRK13639 93 APTVEEDVAFGPLNLGLS-K---------------------------------EEVEKRVKEALKAVGMEGFENKPPH-- 136 (275)
T ss_pred cccHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCchhhcCChh--
Confidence 579999998753221100 0 0111235678899999887776654
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
.||||||||++||++++.+|++++|||||+|||+.+...+.+.|+++.+ . +++|+.++|..+++.++||+|++|+
T Consensus 137 ---~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 137 ---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999998864 3 4556668888889999999999999
Q ss_pred CCeEEEecChHHHH
Q 000971 400 DGQIVYQGPRELVL 413 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1206)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=318.70 Aligned_cols=211 Identities=28% Similarity=0.404 Sum_probs=163.2
Q ss_pred EEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 000971 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1206)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1206)
+++|+++.++.. +++.+|+|+||++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhh
Confidence 577888776310 123599999999999999999999999999999999998653 47999999976532
Q ss_pred ---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-C-----CCCCCC
Q 000971 910 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-G-----LPGVSG 980 (1206)
Q Consensus 910 ---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-g-----~~~~~~ 980 (1206)
...++.++|++|++.+++ .||+|++.+....+ ..+ .+.+.++..++.+..+.+. | ...+..
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVGERGSQ 139 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeeccCCcc
Confidence 223456999999988776 69999998753211 111 1233344444433222211 0 112467
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|++. ++ +.||++++|++ |++
T Consensus 140 LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i 215 (238)
T cd03249 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQV 215 (238)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999986 7999999999986 45 47999999986 688
Q ss_pred EEEcCC
Q 000971 1061 IYVGPL 1066 (1206)
Q Consensus 1061 ~~~g~~ 1066 (1206)
++.|+.
T Consensus 216 ~~~~~~ 221 (238)
T cd03249 216 VEQGTH 221 (238)
T ss_pred EEeCCH
Confidence 888874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=319.36 Aligned_cols=205 Identities=22% Similarity=0.320 Sum_probs=166.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-------ccceEEEecCCCC-
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDN- 236 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~- 236 (1206)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999987 999999999876432 1356999999862
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc-ccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADTM 315 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1206)
.+...||+||+.|.....+... .+....++.+++.+||.. ..+..
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 3334799999988643221100 011123567788899963 44544
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 316 vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.. . +++|+.++|...++.+++|++
T Consensus 143 -----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 143 -----PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEE
Confidence 447999999999999999999999999999999999999999999998764 3 455666778888888999999
Q ss_pred EEEcCCeEEEecChHHHH
Q 000971 396 ILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1206)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=309.94 Aligned_cols=210 Identities=23% Similarity=0.277 Sum_probs=167.7
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEc--Cc-
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS--GY- 905 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~--g~- 905 (1206)
+.++|+++.++.... ...++.+|+|+||+|++||+++|+||||||||||+++|+|...+ ..|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 568889887742100 00124699999999999999999999999999999999998663 47999998 42
Q ss_pred -cCCc---cc----ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCC
Q 000971 906 -PKKQ---ET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLP 976 (1206)
Q Consensus 906 -~~~~---~~----~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~ 976 (1206)
+... .. .++.+||++|++.+++.+||.|++.+..... ....+...+.+.++++.++|.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3211 11 1346899999998999999999998754322 12333445568899999999763 3444
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+..||+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+...+|+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 4579999999999999999999999999999999999999999999999877999999999975 4567899998764
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=310.18 Aligned_cols=206 Identities=27% Similarity=0.341 Sum_probs=172.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+++|+|+|+.++||++++|+|||||||||||++|+|.++++ +|+|.++|.++..... ++.++|++|++..++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 36999999999999999999999999999999999999987 9999999998865432 4579999999988999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.++....+... ......++.+++.+||++..++.+ ..
T Consensus 90 ~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (232)
T cd03300 90 FENIAFGLRLKKLPK----------------------------------AEIKERVAEALDLVQLEGYANRKP-----SQ 130 (232)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999988654322100 001123567889999987777655 47
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++....+. +|+.++|...++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~-tiii~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGI-TFVFVTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999987653344 455567777888999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999887653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=308.24 Aligned_cols=195 Identities=25% Similarity=0.368 Sum_probs=163.5
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHHHHH
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~Etl~ 248 (1206)
|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999987 9999999998765432 357999999999999999999998
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
++........ .+....++++++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGLKLT----------------------------------AEDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred cccccccCcc----------------------------------HHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 7532110000 001223567899999987777655 4799999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEec
Q 000971 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1206)
Q Consensus 329 kkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G 407 (1206)
||||+||++++.+|++++|||||+|||..+...+.+.|++++... +.+|+.++|...++.++||+|++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET-KMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999876533 455556888888999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=316.23 Aligned_cols=211 Identities=25% Similarity=0.379 Sum_probs=167.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|+++.++. .+.+|+|+||++++|++++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 4788999987631 13599999999999999999999999999999999998763 479999999765
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-C-----CCCC
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-G-----LPGV 978 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-g-----~~~~ 978 (1206)
.. ..+++.++|++|++.+++. |++||+.+... ... ...+.+.++.+++.+..+.+. | ...+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2345679999999887775 99999976421 111 123455566666654443321 1 1124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..||+|||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|++. ++ +.+|++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-C
Confidence 6899999999999999999999999999999999999999999999985 5899999999986 34 56999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 88887763
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=313.65 Aligned_cols=200 Identities=24% Similarity=0.381 Sum_probs=166.4
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1206)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 5899999999999999999999999999999999999987 9999999998764332 357999999987776 69
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccccCccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGDEMI 321 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (1206)
|+||+.+.....+ . ....++.+++.+||+ +..+. .+
T Consensus 93 v~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATR-----DV 129 (241)
T ss_pred HHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhC-----Cc
Confidence 9999987532110 0 001245678889996 44444 34
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+||+|++.+|++++|||||+|||..+...+.+.|+++....+ ++|+.++|+.+++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN-LTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 57999999999999999999999999999999999999999999998765334 45666788888899999999999999
Q ss_pred eEEEecChHHHH
Q 000971 402 QIVYQGPRELVL 413 (1206)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1206)
++++.|+++++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988763
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=314.24 Aligned_cols=213 Identities=23% Similarity=0.291 Sum_probs=169.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCeeCCCCCc---cceEEEecCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIG 239 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~ 239 (1206)
..+|+|+|+.|++|++++|+|||||||||||++|+|.+++. ...+|+|.++|.++..... ++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35899999999999999999999999999999999998741 1138999999998764332 357999999988899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
.+||+||+.++.+....... ..+....+..+++.+||.+..... -+.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-~~~ 142 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKS--------------------------------KKELQERVRWALEKAQLWDEVKDR-LDA 142 (250)
T ss_pred CCcHHHHHHHHHHhccccCC--------------------------------HHHHHHHHHHHHHHcCCCcchhhh-hcC
Confidence 99999999986543211000 001122356688889986421111 123
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
.+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++++.++|..+++.+.+|+|++|+
T Consensus 143 ~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l~ 219 (250)
T PRK14247 143 PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--KD-MTIVLVTHFPQQAARISDYVAFLY 219 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCEEEEEE
Confidence 345799999999999999999999999999999999999999999999874 24 556667788888889999999999
Q ss_pred CCeEEEecChHHHH
Q 000971 400 DGQIVYQGPRELVL 413 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1206)
+|++++.|+++++.
T Consensus 220 ~G~i~~~g~~~~~~ 233 (250)
T PRK14247 220 KGQIVEWGPTREVF 233 (250)
T ss_pred CCeEEEECCHHHHH
Confidence 99999999988763
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=300.79 Aligned_cols=171 Identities=29% Similarity=0.420 Sum_probs=150.1
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.++ ++.+|+++||++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 35788887763 24699999999999999999999999999999999998663 4899999998653
Q ss_pred c-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH
Q 000971 909 Q-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1206)
Q Consensus 909 ~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 983 (1206)
. ..+++.++|++|++.+++..|++|++.+. ||+
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~ 103 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSG 103 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCH
Confidence 2 23456799999999888889999987542 899
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++|
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999887 899999999986 566789999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=309.38 Aligned_cols=197 Identities=23% Similarity=0.315 Sum_probs=166.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999887 999999998875422 25799999999889999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
||+.+.....+.. ...+..+++.+||++..+..+ ..|
T Consensus 89 ~~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKA-----KQF 125 (223)
T ss_pred HHHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhH-----hhC
Confidence 9998764322100 012456788999987766554 469
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv 404 (1206)
||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.. .+. +|+.++|...++.+.+|+|++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~-tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGI-TVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCC-EEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998754 344 4555677778888999999999999999
Q ss_pred EecChH
Q 000971 405 YQGPRE 410 (1206)
Q Consensus 405 ~~G~~~ 410 (1206)
+.|++.
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=317.43 Aligned_cols=205 Identities=25% Similarity=0.335 Sum_probs=168.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCC--CC---ccceEEEecCCCC-CC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE--FV---PERTAAYISQHDN-HI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~--~~---~~~~~~yv~Q~d~-~~ 238 (1206)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 35899999999999999999999999999999999999987 9999999998742 11 1356999999864 34
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+..|+.||+.+.....+... .+....++.+++.+||.+..++.+
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQPI-- 134 (271)
T ss_pred ccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcCCc--
Confidence 56689999988643221100 001123567889999987776654
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. .+ ++|+.++|+..++.+++|++++|
T Consensus 135 ---~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 135 ---QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QG-NHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998764 34 45666788888999999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+++++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=347.82 Aligned_cols=212 Identities=27% Similarity=0.422 Sum_probs=177.9
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+|.|+. +.+.+|+|+|+.++||+.+||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEe
Confidence 46999999999851 123599999999999999999999999999999999998764 47999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.+ ..+++.+|||+|++.+++ .|++||+.++. + +.+ ++.+.++++..++.+.. |+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 654 356778999999988876 69999997642 1 222 33467788888876543 4455554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. .|+|+|+++|+++ ....||++++|++
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 46899999999999999999999999999999999999999999999884 5899999999986 3567999999986
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 667 -G~i~~~g~~ 675 (694)
T TIGR01846 667 -GQIAESGRH 675 (694)
T ss_pred -CEEEEeCCH
Confidence 799999984
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=315.66 Aligned_cols=205 Identities=23% Similarity=0.323 Sum_probs=169.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC----------------CccceE
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----------------VPERTA 228 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~----------------~~~~~~ 228 (1206)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++++ +|+|.++|.++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 45999999999999999999999999999999999999887 99999999887431 113579
Q ss_pred EEecCCCCCCCCCCHHHHHHHHhh-hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC
Q 000971 229 AYISQHDNHIGEMTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1206)
Q Consensus 229 ~yv~Q~d~~~~~lTV~Etl~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1206)
+|++|++.+++.+||+||+.++.. ..... ..+....+.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------------------------------KQEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHHHHHHcC
Confidence 999999999999999999987532 11100 0011223567889999
Q ss_pred Ccccc-cccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 000971 308 LEVCA-DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386 (1206)
Q Consensus 308 L~~~~-dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~ 386 (1206)
|.+.. +. .++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. . +.+|+.++|+..
T Consensus 141 l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsH~~~ 213 (257)
T PRK10619 141 IDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMG 213 (257)
T ss_pred CChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH
Confidence 97653 43 3457999999999999999999999999999999999999999999998764 3 455566788888
Q ss_pred hHHhhcCeEEEEcCCeEEEecChHHHH
Q 000971 387 ETYDLFDDIILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 387 ~~~~~fD~vilL~~G~iv~~G~~~~~~ 413 (1206)
++..+||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 898999999999999999999988763
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=311.39 Aligned_cols=194 Identities=20% Similarity=0.292 Sum_probs=165.7
Q ss_pred CceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000971 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 931 (1206)
Q Consensus 852 ~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 931 (1206)
..+.+|++||++|+||+++||+||||||||||+++|+|...+ .+|+|.++|. ++++.|+..+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCE----------EeEEecccCCCCCCcH
Confidence 446799999999999999999999999999999999998763 4799999984 3567777767778999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000971 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1206)
Q Consensus 932 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgL 1011 (1206)
.||+.+..... ....++....++++++.++|.+..+..+ ..||+|||||++||++|+.+|+||+|||||+||
T Consensus 103 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99998754332 1234444556788999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 1012 DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1012 D~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
|+.+...+++.|+++.+.|+|||+++|++. ++.+.+|++++|++ |++++.|+..
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 228 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGELD 228 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCHH
Confidence 999999999999998777999999999986 57788999999985 7899888854
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=328.24 Aligned_cols=228 Identities=25% Similarity=0.359 Sum_probs=194.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-++.+|++.++. ..++|+||||++++||++||||.||||||||+|+|+|-..+ .+|+|.+||.+.
T Consensus 8 ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEc
Confidence 477888887663 46799999999999999999999999999999999998764 489999999876
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcC-CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 908 KQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL-PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 908 ~~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
.. .....-++.|.|+..+.|++||.||+.++...+. ..-++.+...+...++|+.+++....++++ ..||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCC
Confidence 42 2234568999999999999999999988765544 234667777888999999999964466765 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
.||||.|.|||||..+++|||||||||.|+......+.+.++++.++|.+||++||... ++++.|||+.+|.+ |+.+.
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999997 89999999999986 78888
Q ss_pred EcCC-Cc-chhHHHHHH
Q 000971 1063 VGPL-GR-HSCQLISYF 1077 (1206)
Q Consensus 1063 ~g~~-~~-~~~~~~~yf 1077 (1206)
.++. ++ .-.+++...
T Consensus 226 ~~~~~~~~~~~~lv~~M 242 (500)
T COG1129 226 TRPTAAETSEDELVRLM 242 (500)
T ss_pred ecccccCCCHHHHHHHh
Confidence 8883 33 233455443
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=362.06 Aligned_cols=205 Identities=27% Similarity=0.379 Sum_probs=165.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|++|+||+.++|+||||||||||+|+|+|.++|+ +|+|.+||+++.+..+ ++.++||+|++.+|+ .
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-G 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-c
Confidence 45899999999999999999999999999999999999998 9999999999988765 468999999987775 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
|++|||.++.. . + .+...+ ++...+ .+.. +-.|++..||.+|+.+
T Consensus 542 TI~eNi~~~~~-~---~-~e~i~~---------------------al~~a~------l~~~--i~~lp~G~dt~ige~G- 586 (686)
T TIGR03797 542 SIFENIAGGAP-L---T-LDEAWE---------------------AARMAG------LAED--IRAMPMGMHTVISEGG- 586 (686)
T ss_pred cHHHHHhcCCC-C---C-HHHHHH---------------------HHHHcC------cHHH--HHhccccccccccCCC-
Confidence 99999998632 0 0 011111 110000 0111 1235667899999765
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
.+||||||||++||||++.+|+|++||||||+||+.+..++.+.|+++ ++|+|+ ++|.. +....+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~Ii-ItHr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIV-IAHRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEE-EecCh-HHHHcCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999874 356555 45544 456779999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
+++++|+++++.+
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=365.95 Aligned_cols=211 Identities=25% Similarity=0.377 Sum_probs=177.8
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+|+|+. ++.+|+|+|++|+||+.+||+||||||||||+++|+|...+ .+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEE
Confidence 36999999999851 23599999999999999999999999999999999998774 48999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.+ ..+++.+|||+|++.+++ -|++||+.++.. .+.+ ++.++++++..++.+.. |+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 643 456788999999998886 599999987521 1222 23477888888876543 4556654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999985 4899999999986 4678999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 799999984
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=309.71 Aligned_cols=198 Identities=28% Similarity=0.351 Sum_probs=162.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1206)
..+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 35999999999999999999999999999999999999987 9999999998865432 2469999999989
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++.+||.||+.+.....+... .+....++.+++.+||.+..+..+.
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 145 (228)
T PRK10584 100 IPTLNALENVELPALLRGESS----------------------------------RQSRNGAKALLEQLGLGKRLDHLPA 145 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCChh
Confidence 999999999988643221100 0112235678899999877666554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++...+.| |+.++|+.+++ +.+|++++
T Consensus 146 -----~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH~~~~~-~~~d~i~~ 218 (228)
T PRK10584 146 -----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTT-LILVTHDLQLA-ARCDRRLR 218 (228)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEE
Confidence 699999999999999999999999999999999999999999999886533444 55566666666 55999999
Q ss_pred EcCCeEEEe
Q 000971 398 LSDGQIVYQ 406 (1206)
Q Consensus 398 L~~G~iv~~ 406 (1206)
|++|++++.
T Consensus 219 l~~g~i~~~ 227 (228)
T PRK10584 219 LVNGQLQEE 227 (228)
T ss_pred EECCEEEec
Confidence 999999753
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=318.60 Aligned_cols=208 Identities=24% Similarity=0.329 Sum_probs=169.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC-CCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1206)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 358999999999999999999999999999999999998862223999999998865332 357999999964 6778
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.|..+..+.. ..+....++.+++.+||.+..++.+
T Consensus 100 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~---- 141 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------------------------------RPEMIKIVRDVLADVGMLDYIDSEP---- 141 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCc----
Confidence 99999998864322110 0011234567889999987666554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
+.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|++++...+ ++|+.++|..+++ ..||++++|++
T Consensus 142 -~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tvli~tH~~~~~-~~~d~i~~l~~ 218 (282)
T PRK13640 142 -ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNN-LTVISITHDIDEA-NMADQVLVLDD 218 (282)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHH-HhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999998865334 4455566666676 57999999999
Q ss_pred CeEEEecChHHHH
Q 000971 401 GQIVYQGPRELVL 413 (1206)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1206)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~~~ 231 (282)
T PRK13640 219 GKLLAQGSPVEIF 231 (282)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998764
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=293.38 Aligned_cols=206 Identities=25% Similarity=0.372 Sum_probs=178.6
Q ss_pred CceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCC
Q 000971 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPF 928 (1206)
Q Consensus 852 ~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~ 928 (1206)
+.+.+|++||..|++|.+|+|+|||||||||||.++++... ..+|+|.++|.++.. ...++.+..+-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 35789999999999999999999999999999999998665 348999999998643 3356667788888888888
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000971 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008 (1206)
Q Consensus 929 ~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPT 1008 (1206)
+||+|-+.|+..-.. .....++.+..++++++.++|.++.|+.. ..||||||||.-||+.|+.+.+.++||||.
T Consensus 90 lTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred eEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcc
Confidence 999999999743222 22234556778999999999999999984 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 1009 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1009 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
++||...+..+|+.||+++++ |+|||++.||.+. ...+.|+|+-|++ |+++..|++.
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~ 221 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPD 221 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHH
Confidence 999999999999999999977 9999999999874 4567899999985 7999999975
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=312.89 Aligned_cols=213 Identities=24% Similarity=0.321 Sum_probs=168.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l--~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1206)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... +..++|++|++..+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999995 565 9999999998765432 23489999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-cccccccc
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVG 317 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (1206)
+.+|++|++.+.......... .... ...+....++.+++.+||+ ...+..++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~------------------~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARG------------------EEPL---------DLLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccc------------------cccc---------cHHHHHHHHHHHHHHcCCchhhcccccc
Confidence 999999999886432110000 0000 0001123457789999997 35554443
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh-cCeEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-FDDII 396 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~-fD~vi 396 (1206)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ .+|+.++|..+++... +|+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PD-RSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-cEEEEEEecHHHHHhhcCCeEE
Confidence 14999999999999999999999999999999999999999999998754 34 4555577777888887 89999
Q ss_pred EEcCCeEEEecChHHHH
Q 000971 397 LLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1206)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999988654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=320.20 Aligned_cols=221 Identities=23% Similarity=0.293 Sum_probs=175.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC---CeeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 904 (1206)
.+.++||++.+. .+.+|+++||+|++|++++|+|+|||||||||++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999998874 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCC---------CCC-HHHHHHHHHHHHHHcCCcccc
Q 000971 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP---------EVD-SETRKMFIEEVMELVELKPLI 969 (1206)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~---------~~~-~~~~~~~v~~~l~~l~L~~~~ 969 (1206)
.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .+..++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 123567999999988777 59999998864321100 011 123356688999999885322
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcC
Q 000971 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD 1049 (1206)
Q Consensus 970 ~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d 1049 (1206)
...... .+..||||||||++||+||+.+|+||||||||+|||+.++..+++.|+++++ +.|||+++|+++ .+.+.+|
T Consensus 191 ~~~~~~-~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLDD-NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhcC-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 222111 2467999999999999999999999999999999999999999999999876 589999999987 5778899
Q ss_pred eEE-EEecCcEEEEEcCC
Q 000971 1050 ELF-LMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1050 ~v~-ll~~gg~~~~~g~~ 1066 (1206)
+++ +|++ |++++.|+.
T Consensus 268 ~i~~~l~~-G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLTG-GELVEYDDT 284 (305)
T ss_pred EEEEEecC-CEEEEeCCH
Confidence 975 5664 799999875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=313.58 Aligned_cols=204 Identities=24% Similarity=0.320 Sum_probs=168.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCC------C---CccceEEEecCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE------F---VPERTAAYISQHD 235 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~------~---~~~~~~~yv~Q~d 235 (1206)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|.++.. . ..++.++|++|++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 35999999999999999999999999999999999999887 9999999987631 1 1135699999999
Q ss_pred CCCCCCCHHHHHHHHh-hhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc
Q 000971 236 NHIGEMTVRETLAFSA-RCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1206)
Q Consensus 236 ~~~~~lTV~Etl~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1206)
.+++.+||+||+.+.. ...+... .+....++.+++.+||++..+.
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~ 137 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLSK----------------------------------DQALARAEKLLERLRLKPYADR 137 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhC
Confidence 9999999999997532 1111000 0011235678899999876665
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.+ +.|||||||||+||++++.+|++++|||||+|||..+...+.+.|+++.. . +++++.++|+..++.+++|+
T Consensus 138 ~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sh~~~~~~~~~d~ 210 (242)
T PRK11124 138 FP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-T-GITQVIVTHEVEVARKTASR 210 (242)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCE
Confidence 54 47999999999999999999999999999999999999999999998753 3 45566677888888899999
Q ss_pred EEEEcCCeEEEecChHHH
Q 000971 395 IILLSDGQIVYQGPRELV 412 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~ 412 (1206)
+++|.+|++++.|+++++
T Consensus 211 i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 211 VVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999988754
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=303.62 Aligned_cols=202 Identities=19% Similarity=0.308 Sum_probs=153.3
Q ss_pred CCcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcC
Q 000971 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 904 (1206)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g 904 (1206)
.|..+-.+||+|.|+ +.++++++++|-|.--..+||+||||.||||||++|.|..++. .|+..-|.
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~--~GE~RKnh 648 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN--DGELRKNH 648 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC--cchhhccc
Confidence 345678899998875 3467999999999999999999999999999999999987743 56554332
Q ss_pred ccCCcccccceEEEeecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 905 YPKKQETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 905 ~~~~~~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
+-.+|+.-|.. .+...-|.-|.|.-. . .++.+ .....|-.+||...++++- +..||
T Consensus 649 --------rL~iG~FdQh~~E~L~~Eetp~EyLqr~--F----Nlpyq----~ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 649 --------RLRIGWFDQHANEALNGEETPVEYLQRK--F----NLPYQ----EARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred --------eeeeechhhhhHHhhccccCHHHHHHHh--c----CCChH----HHHHHhhhhhhhhccceEe----eeecC
Confidence 23478877753 234455777766421 1 12222 2456788999998888763 56899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
||||-||++|---+..|+||||||||++||..+...+-+.|++. ...||+++|+-.. |.+--..+.++.+.|.--.
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhc
Confidence 99999999999999999999999999999999999999998876 4589999999764 5555567777766554444
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|..
T Consensus 783 dGdF 786 (807)
T KOG0066|consen 783 DGDF 786 (807)
T ss_pred cccH
Confidence 4554
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=346.49 Aligned_cols=215 Identities=23% Similarity=0.277 Sum_probs=175.9
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcC----
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG---- 904 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g---- 904 (1206)
++++|+++.+. ++.+|+||||++.+|+++||+|||||||||||++|+|.....+.+|+|.++|
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~ 67 (520)
T TIGR03269 1 IEVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE 67 (520)
T ss_pred CEEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccc
Confidence 35788888763 2469999999999999999999999999999999999741013479999872
Q ss_pred -------------------ccC----------Cc---ccccceEEEeecC-CCCCCCCCHHHHHHHhhhhcCCCCCCHHH
Q 000971 905 -------------------YPK----------KQ---ETFARISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSET 951 (1206)
Q Consensus 905 -------------------~~~----------~~---~~~~~~~gyv~q~-~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~ 951 (1206)
.++ .. ..+++.+||++|+ +.+++.+||+|++.|..... ....++
T Consensus 68 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~ 144 (520)
T TIGR03269 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKE 144 (520)
T ss_pred cccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 111 00 1134568999997 67788899999998864332 123344
Q ss_pred HHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 000971 952 RKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 1030 (1206)
Q Consensus 952 ~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g 1030 (1206)
.++++.++++.++|.+..++.+ ..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|
T Consensus 145 ~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g 219 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG 219 (520)
T ss_pred HHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 5567899999999988777763 57999999999999999999999999999999999999999999999865 49
Q ss_pred CEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1031 RTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1031 ~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
.|||+++|++. .+.+.||++++|++ |++++.|+.
T Consensus 220 ~tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 253 (520)
T TIGR03269 220 ISMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTP 253 (520)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCH
Confidence 99999999987 46788999999986 688888875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=313.79 Aligned_cols=198 Identities=24% Similarity=0.319 Sum_probs=167.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++ ++.+|+++||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCc--
Confidence 478999998874 23599999999999999999999999999999999998663 4799999872
Q ss_pred CcccccceEEEeecCCCCCCC--CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 908 KQETFARISGYCEQNDIHSPF--VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~--~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
..++|++|++.+++. .|+.+++.+.. ... ++.+.++++.++|.+..++.+ ..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999999877665 47788765321 111 234788999999998877763 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
|||++||++|+.+|++|+|||||+|||+.+...+++.|+++.++ |+|||+++|+++ ++.+.+|++++|+ + ++++.|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999998765 899999999987 5778899999995 4 688888
Q ss_pred CC
Q 000971 1065 PL 1066 (1206)
Q Consensus 1065 ~~ 1066 (1206)
+.
T Consensus 203 ~~ 204 (251)
T PRK09544 203 TP 204 (251)
T ss_pred CH
Confidence 75
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=316.92 Aligned_cols=209 Identities=23% Similarity=0.384 Sum_probs=171.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
..+|+|+|+.+++|++++|+|||||||||||++|+|.++++ +|+|.++|.++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 45999999999999999999999999999999999999987 9999999998765432 24699999999889999
Q ss_pred CHHHHHHHHhhhc-CCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 242 TVRETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 242 TV~Etl~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
||+||+.++..-. ...... . ......++.+++.+||++..++.+
T Consensus 97 tv~~~~~~~~~~~~~~~~~~------------------~-------------~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (265)
T PRK10253 97 TVQELVARGRYPHQPLFTRW------------------R-------------KEDEEAVTKAMQATGITHLADQSV---- 141 (265)
T ss_pred cHHHHHHhCcccccccccCC------------------C-------------HHHHHHHHHHHHHcCCHHHhcCCc----
Confidence 9999998752100 000000 0 001123567889999987666554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
+.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|++++... +++|+.++|...++.+++|+|++|++
T Consensus 142 -~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~ 219 (265)
T PRK10253 142 -DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK-GYTLAAVLHDLNQACRYASHLIALRE 219 (265)
T ss_pred -ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4799999999999999999999999999999999999999999999876533 45566677888899999999999999
Q ss_pred CeEEEecChHHHH
Q 000971 401 GQIVYQGPRELVL 413 (1206)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1206)
|++++.|+++++.
T Consensus 220 G~i~~~g~~~~~~ 232 (265)
T PRK10253 220 GKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=309.78 Aligned_cols=201 Identities=23% Similarity=0.400 Sum_probs=168.4
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHHHHH
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~Etl~ 248 (1206)
|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999987 9999999998765432 357999999999999999999998
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
+.... .... . ......++.+++.+||++..++.+. .|||||
T Consensus 94 ~~~~~-~~~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLKL--N-------------------------------AAQREKLHAIARQMGIEDLLARLPG-----QLSGGQ 134 (232)
T ss_pred ccccc-ccCC--C-------------------------------HHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHH
Confidence 75321 0000 0 0011235678899999887776654 699999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEecC
Q 000971 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1206)
Q Consensus 329 kkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~ 408 (1206)
||||+||++++.+|++++|||||+|||..++..+.+.|+++.+..+ ++|+.++|...++.+++|+|++|.+|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ-LTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998765334 455557788888899999999999999999999
Q ss_pred hHHHH
Q 000971 409 RELVL 413 (1206)
Q Consensus 409 ~~~~~ 413 (1206)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=322.69 Aligned_cols=211 Identities=19% Similarity=0.277 Sum_probs=169.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCeeCCCC-----CccceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1206)
..+|+|+|+.|++|++++|+|||||||||||++|+|..++. ...+|+|.++|.++... ..++.++||+|++++
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35899999999999999999999999999999999998631 02389999999998632 224679999999887
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++ .||+||+.|+....+... . +..+..+..+++.++|.+..++.++
T Consensus 175 ~~-~ti~eNi~~~~~~~~~~~-~--------------------------------~~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNNGIND-R--------------------------------KILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred CC-CcHHHHHHhHHHhcCCCh-H--------------------------------HHHHHHHHHHHHHcCCcchhhhhhh
Confidence 74 799999998643321100 0 0011124456777777654455665
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
. ....|||||||||+||||++.+|+||+|||||+|||+.+...+.++|+++.+ + .+|+.++|....+.+.+|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~-~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--K-YSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEE
Confidence 4 4558999999999999999999999999999999999999999999998753 3 5566688888888999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999874
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=316.41 Aligned_cols=210 Identities=24% Similarity=0.339 Sum_probs=171.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++++ +|+|.++|.++..... ++.++|++|+..+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 36999999999999999999999999999999999999887 9999999998754332 35699999998888999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||.||+.++..... .... . + . ......++.+++.+||++..++.++
T Consensus 101 tv~e~l~~~~~~~~--~~~~-------------~-~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 146 (265)
T PRK10575 101 TVRELVAIGRYPWH--GALG-------------R-F-G-------------AADREKVEEAISLVGLKPLAHRLVD---- 146 (265)
T ss_pred cHHHHHHhCccccc--cccc-------------C-C-C-------------HHHHHHHHHHHHHcCCHHHhcCCcc----
Confidence 99999987532100 0000 0 0 0 0011235678899999876666654
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
.|||||||||+||++|+.+|+|++|||||+|||..+...+.+.|++++... +++|+.++|..+++.+++|+|++|++|
T Consensus 147 -~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~-~~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 147 -SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER-GLTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999876533 455666778888999999999999999
Q ss_pred eEEEecChHHHH
Q 000971 402 QIVYQGPRELVL 413 (1206)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1206)
++++.|+.+++.
T Consensus 225 ~i~~~~~~~~~~ 236 (265)
T PRK10575 225 EMIAQGTPAELM 236 (265)
T ss_pred eEEEecCHHHhc
Confidence 999999987653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=307.96 Aligned_cols=200 Identities=26% Similarity=0.410 Sum_probs=160.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCC--CCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHI--GEMT 242 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lT 242 (1206)
.++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999987 999999998764 2345799999987653 3489
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.++...... .+.. + . .+....++.+++.+||++..++.++
T Consensus 87 v~e~l~~~~~~~~~--~~~~--------------~--~------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 131 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRR--------------L--S------------KADKAKVDEALERVGLSELADRQIG----- 131 (213)
T ss_pred HHHHHHhccccccc--cccC--------------C--C------------HHHHHHHHHHHHHcCCHHHHhCCcc-----
Confidence 99999885431100 0000 0 0 0012235678899999876666554
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++++ . +++|+.++|..+++.+++|+|++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 6999999999999999999999999999999999999999999999865 3 455666788888999999999999886
Q ss_pred EEEec
Q 000971 403 IVYQG 407 (1206)
Q Consensus 403 iv~~G 407 (1206)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=304.97 Aligned_cols=173 Identities=24% Similarity=0.306 Sum_probs=136.5
Q ss_pred eecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000971 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 936 (1206)
Q Consensus 857 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 936 (1206)
|.==.+.|..||+++++||||-||||+.++|+|...+. +|+ .. .-.++|=||--.-....||++-|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 44446788999999999999999999999999977643 554 11 123677788655456789999775
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000971 937 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016 (1206)
Q Consensus 937 ~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~ 1016 (1206)
-...-+... ..+..|+++-++|.++.++.+ .+|||||.|||+||.+|.++++|.+||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 432211111 123568899999999999885 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 1017 AIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 1017 ~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
..+-+.||+...+ +.|.+++-||.-+ +--..||+++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999998754 8999999999753 444678888775
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=314.02 Aligned_cols=205 Identities=21% Similarity=0.291 Sum_probs=168.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC-CCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1206)
..+|+|+|+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999987 9999999998764322 357999999964 6778
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
.||.||+.++....+.. + .+....++.+++.+||.+..++.+
T Consensus 97 ~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 138 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP-R---------------------------------EEMIKRVDEALLAVNMLDFKTREP---- 138 (277)
T ss_pred CCHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCHhHhhCCc----
Confidence 89999998864321110 0 001123567888999987766554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++....+ ++|+.++|..+++. .+|+|++|++
T Consensus 139 -~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tiil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 139 -ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ-LTVLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 47999999999999999999999999999999999999999999998765324 45555777777775 6999999999
Q ss_pred CeEEEecChHHHH
Q 000971 401 GQIVYQGPRELVL 413 (1206)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1206)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=315.61 Aligned_cols=207 Identities=20% Similarity=0.247 Sum_probs=169.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCC--CCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN--HIG 239 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~--~~~ 239 (1206)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999987 9999999998753222 246999999864 578
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccccC
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGD 318 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (1206)
.+||.|++.+..+....... .+....++.+++.+||. +..+..+
T Consensus 103 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 147 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLEP---------------------------------EQREKQIIETLRQVGLLPDHASYYP-- 147 (267)
T ss_pred chhHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCChHHHhcCc--
Confidence 88999999886542210000 01112356789999994 5555443
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
..|||||||||+||++|+.+|+|++|||||+|||+.+...+.+.|+++.+.. +++|+.++|..+++..+||+|++|
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 148 ---HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ-GISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred ---hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHhcCEEEEE
Confidence 4799999999999999999999999999999999999999999999986533 455666788888999999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=309.11 Aligned_cols=206 Identities=26% Similarity=0.408 Sum_probs=171.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+++|+|+|+++.+|++++|+||||||||||+++|+|.+++. +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 36999999999999999999999999999999999999887 9999999998765433 3579999999988999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
.||+.+.....+... ......++.+++.++|....++.+ +.
T Consensus 90 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHPK----------------------------------AKIKARVEELLELVQLEGLGDRYP-----NQ 130 (237)
T ss_pred HHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 999988654321100 001123466788899977666554 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
||||||||++||++++.+|++++|||||+|||..+...+.+.|++++. ..+.+|+.++|...++.+++|+|++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3234455566777888999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988764
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=303.44 Aligned_cols=194 Identities=24% Similarity=0.316 Sum_probs=163.5
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|+++.+. ++.+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccc
Confidence 56788888763 24699999999999999999999999999999999998764 4799999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
. ..+++.++|++|+..+++..||+||+.+.... . .. ...++++++.+++.+..+..+ ..||+|||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S----PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C----cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 23456799999998888899999999876421 1 11 235789999999987666653 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEE
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELF 1052 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ 1052 (1206)
||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ....+|..+
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999976 345677654
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=312.67 Aligned_cols=210 Identities=22% Similarity=0.320 Sum_probs=165.1
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCeeCCCCC-----ccceEEEecCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDNHI 238 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~~ 238 (1206)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++ +....+|+|.++|.++.... .++.++|++|++.++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 58999999999999999999999999999999999864 10013899999999875321 135799999998888
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+ .||+||+.|+....+.... .+....++.+++.+||.+...+.. +
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK---------------------------------AYLAERVERSLRHAALWDEVKDRL-H 144 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 7 5999999987543221000 001123456778888854222222 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
..++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++. .+ .+|+.++|+..++.+++|+|++|
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--AR-YTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CeEEEEEecHHHHHHhCCEEEEE
Confidence 3456799999999999999999999999999999999999999999999874 24 45666778888899999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 222 YMGKLIEVGPTEQIF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987663
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=345.68 Aligned_cols=221 Identities=19% Similarity=0.262 Sum_probs=179.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC---eeEEEEEEcC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 904 (1206)
.+.++|+++.++.. ...+.+|+||||+|++||++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 37889999887411 01246999999999999999999999999999999999976531 2589999999
Q ss_pred ccCCcc------cc-cceEEEeecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc---cccc
Q 000971 905 YPKKQE------TF-ARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL---IQSL 972 (1206)
Q Consensus 905 ~~~~~~------~~-~~~~gyv~q~~~--~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~ 972 (1206)
.++... .. ++.+||++|++. +.+.+|+.|++.+...... ..+..+.+++++++++.++|.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 875321 11 246899999974 5677899999876432211 23344556778999999999763 4555
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeE
Q 000971 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 973 ~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|++. .+...+|++
T Consensus 154 -----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 -----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred -----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999999765 899999999987 577889999
Q ss_pred EEEecCcEEEEEcCC
Q 000971 1052 FLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1052 ~ll~~gg~~~~~g~~ 1066 (1206)
++|++ |++++.|+.
T Consensus 228 ~~l~~-G~i~~~g~~ 241 (529)
T PRK15134 228 AVMQN-GRCVEQNRA 241 (529)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 789888875
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=335.87 Aligned_cols=213 Identities=24% Similarity=0.361 Sum_probs=178.1
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+|+++. .++.+|+|+|+.+++|++++|+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 329 ~~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~--~~G~I~i~g~~ 395 (571)
T TIGR02203 329 GDVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP--DSGQILLDGHD 395 (571)
T ss_pred CeEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEe
Confidence 36999999999852 123599999999999999999999999999999999998774 47999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
.++ ..+++.++||+|++.+++ -|++|||.++. +.+.+ ++.++++++.+++.+.. |+.+|..
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~ 466 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466 (571)
T ss_pred HHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC
Confidence 543 345678999999998775 59999998652 11222 33578889999887644 4445544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
...||||||||++|||+|+++|+||+||||||+||+.+++.+++.|+++. .++|||++||+++ ....||+|++|++
T Consensus 467 -g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~ 542 (571)
T TIGR02203 467 -GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDD 542 (571)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999875 4799999999985 5788999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 543 -g~i~~~g~~ 551 (571)
T TIGR02203 543 -GRIVERGTH 551 (571)
T ss_pred -CEEEeeCCH
Confidence 788888874
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=327.60 Aligned_cols=212 Identities=23% Similarity=0.359 Sum_probs=179.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||+|+|+.+ ..++|+|+||++++||.+||+|+||||||||+.+|+|-..+ .+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeECCcCh
Confidence 78999999999743 24699999999999999999999999999999999997663 489999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------cCCCC
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLPG 977 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------~g~~~ 977 (1206)
.. ...++.+++++|...++. -|+++||.+.. .+. .++.++++++++||.+..... +|+.
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~A----sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~- 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDA----SDEELWAALQQVGLEKLLESAPDGLNTWLGEG- 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCC----CHHHHHHHHHHcCHHHHHHhChhhhhchhccC-
Confidence 43 335667899999877664 69999998752 122 344589999999998765444 5544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
+..||||||||++|||+|++|.++++|||||.|||+.+++.|++.|.+-++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 468999999999999999999999999999999999999999999988654 899999999975 4688999999985
Q ss_pred cEEEEEcCCC
Q 000971 1058 GQEIYVGPLG 1067 (1206)
Q Consensus 1058 g~~~~~g~~~ 1067 (1206)
|+++..|..+
T Consensus 548 Gkiie~G~~~ 557 (573)
T COG4987 548 GKIIEEGTHA 557 (573)
T ss_pred CeeeecCCHH
Confidence 7999999853
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=313.17 Aligned_cols=213 Identities=21% Similarity=0.309 Sum_probs=168.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCeeCC--CCC---ccceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMG--EFV---PERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~nG~~~~--~~~---~~~~~~yv~Q~d~~ 237 (1206)
.++|+|+|+.|++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|.++. ... .++.++|++|++.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 35899999999999999999999999999999999998762 123899999999875 221 23579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++.+||.||+.++....+..... .+....++.+++.+||........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 143 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKSK--------------------------------KELDERVEWALKKAALWDEVKDRL- 143 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCCH--------------------------------HHHHHHHHHHHHHcCCccchhhhh-
Confidence 99999999999865322110000 001123456778888743111111
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
+..+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ + .+|+.++|..+++..++|+|++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~ 220 (253)
T PRK14267 144 NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAF 220 (253)
T ss_pred ccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEE
Confidence 234557999999999999999999999999999999999999999999998753 3 4566678888889999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 221 LYLGKLIEVGPTRKVF 236 (253)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=360.99 Aligned_cols=211 Identities=27% Similarity=0.410 Sum_probs=175.6
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+|+|+.. +++.+|+|+|++|+|||++||+||||||||||+++|+|...+ .+|+|.+||.+
T Consensus 477 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEE
Confidence 469999999998621 124699999999999999999999999999999999998774 47999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.+ ..+++.++||+|++.++. .|++||+.++. + +.+ ++.++++++..++.+.. |+.+|..
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 654 446778999999998876 69999998752 1 222 34578889998887654 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
..+||||||||++|||||+++|+||+||||||+||+.++..|++ .. ...++|||+++|+++ ..+.+|+|++|++
T Consensus 615 -G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~ 688 (711)
T TIGR00958 615 -GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK 688 (711)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999998 22 235899999999985 4678999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 689 -G~ive~Gt~ 697 (711)
T TIGR00958 689 -GSVVEMGTH 697 (711)
T ss_pred -CEEEEeeCH
Confidence 799999984
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=311.02 Aligned_cols=211 Identities=20% Similarity=0.288 Sum_probs=167.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCeeCCCCC-----ccceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFV-----PERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1206)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++. ...+|+|.++|.++.... .++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35899999999999999999999999999999999998641 123899999999875321 14579999999888
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++ .||+||+.++.+..+.... .+....+..+++.+||.+..+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKDK---------------------------------KVLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhhh-
Confidence 87 6999999986432211000 011223556788888864332222
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
+..++.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++. .+ .+|+.++|..+++.++||+|++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK--KN-YTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEecCHHHHHHhcCEEEE
Confidence 24556899999999999999999999999999999999999999999999874 24 4566677888889999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|++++.|+++++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=316.24 Aligned_cols=216 Identities=23% Similarity=0.315 Sum_probs=172.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC--------ccceEEEecCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--------PERTAAYISQHDN 236 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~--------~~~~~~yv~Q~d~ 236 (1206)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 45999999999999999999999999999999999999875223699999998875321 1346899999998
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1206)
+++.+||+||+.+...... ... ... ... . ..+....++.+++.+||++..+..+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~--~~~------~~~---~~~-~--------------~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGST--PFW------RTC---FSW-F--------------TREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhcccc--cch------hhh---ccc-c--------------cHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 9999999999987542100 000 000 000 0 0011234577899999987777655
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
+ .|||||||||+||+||+.+|++++|||||+|||..+...+.+.|+++++.. +++|+.++|+.+++..++|+|+
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-GITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 4 699999999999999999999999999999999999999999999986533 4566667888888999999999
Q ss_pred EEcCCeEEEecChHHH
Q 000971 397 LLSDGQIVYQGPRELV 412 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1206)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=320.17 Aligned_cols=206 Identities=19% Similarity=0.296 Sum_probs=166.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCC----C----CccceEEEecCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE----F----VPERTAAYISQHDN 236 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~----~----~~~~~~~yv~Q~d~ 236 (1206)
..+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~ 100 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPE 100 (289)
T ss_pred cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcc
Confidence 35999999999999999999999999999999999999887 9999999988742 1 11357999999863
Q ss_pred -CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccc
Q 000971 237 -HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADT 314 (1206)
Q Consensus 237 -~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1206)
.+...||+||+.|+....+... .+....++.+++.+||. +..++
T Consensus 101 ~~~~~~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~ 146 (289)
T PRK13645 101 YQLFQETIEKDIAFGPVNLGENK----------------------------------QEAYKKVPELLKLVQLPEDYVKR 146 (289)
T ss_pred hhhhhhHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhcC
Confidence 2334699999998643221100 00112346678899994 45554
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.+ ..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|..+++.++||+
T Consensus 147 ~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiiisH~~~~~~~~~d~ 220 (289)
T PRK13645 147 SP-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY-KKRIIMVTHNMDQVLRIADE 220 (289)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence 44 4799999999999999999999999999999999999999999999886533 45566678888889999999
Q ss_pred EEEEcCCeEEEecChHHHH
Q 000971 395 IILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1206)
|++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 221 VIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988764
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=328.90 Aligned_cols=208 Identities=19% Similarity=0.281 Sum_probs=172.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.+... ..+.+|+||||.|++|+++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~----------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDG----------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCCC----------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEee
Confidence 47788888776421 124699999999999999999999999999999999998764 479999999641
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
++.+...+.+.+|++|++.+..... ..+.++..+.+.++++.++|.+..++.+ ..|||||||
T Consensus 89 ----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQ 150 (549)
T PRK13545 89 ----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKS 150 (549)
T ss_pred ----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHH
Confidence 1222334566789999998754332 1233444566888999999988877764 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
|++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+++ .+...||++++|.+ |++++.|+..
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999998877999999999987 57788999999985 7899999864
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=298.86 Aligned_cols=159 Identities=25% Similarity=0.440 Sum_probs=141.5
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecCC---CCCCC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPF 928 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~ 928 (1206)
+|+++|+++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.++|++|++ .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 79999999999999999999999999999999998764 479999999876432 2356799999984 57788
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000971 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008 (1206)
Q Consensus 929 ~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPT 1008 (1206)
+|++||+.+... ||+|||||++||+||+.+|++|+|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999976421 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 1009 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1009 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|++++|++|
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G 180 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEG 180 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCC
Confidence 999999999999999998777999999999986 678889999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=309.44 Aligned_cols=210 Identities=23% Similarity=0.326 Sum_probs=168.8
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|+++.++. ..+.+|+|+||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL--SSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEh
Confidence 4788999987741 123599999999999999999999999999999999997653 479999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-cC-----CCCC
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-VG-----LPGV 978 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-~g-----~~~~ 978 (1206)
.. ..+++.++|++|++.+++ .|++||+.+.. ... ...+.++++.+++.+..+++ .| ...+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 137 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVEEGG 137 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence 32 234567999999988765 69999986431 111 22466778888877655431 01 1135
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++ ..+|++++|++ |
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLDK-G 213 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999864 689999999986 45 45999999985 7
Q ss_pred EEEEEcC
Q 000971 1059 QEIYVGP 1065 (1206)
Q Consensus 1059 ~~~~~g~ 1065 (1206)
++++.|+
T Consensus 214 ~~~~~~~ 220 (221)
T cd03244 214 RVVEFDS 220 (221)
T ss_pred eEEecCC
Confidence 8888775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=327.18 Aligned_cols=223 Identities=22% Similarity=0.302 Sum_probs=184.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCC--eeEEEEEEcCc
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG--YITGNITISGY 905 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~--~~~G~i~i~g~ 905 (1206)
-++.+|++..+... .+...+++||||++.+||++||+|.|||||||+.++|.|..+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 47889988776533 12357999999999999999999999999999999999965533 35799999998
Q ss_pred cCCc---c----cccceEEEeecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCC
Q 000971 906 PKKQ---E----TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976 (1206)
Q Consensus 906 ~~~~---~----~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~ 976 (1206)
++.. . .+.+.++|++|++. +.|-+||.+-+.=...++.. .+.++.++++.++|+.++|.+-... ..
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 5422 1 12357999999975 56778988777654444443 2367788889999999999876655 11
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
.+..||||||||+.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|+||||+. -+.+.+|||++|.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 2578999999999999999999999999999999999999999999999975 5999999999997 4788999999999
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 230 ~-G~iVE~G~~ 239 (539)
T COG1123 230 K-GEIVETGPT 239 (539)
T ss_pred C-CEEEEecCH
Confidence 5 799999985
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=304.02 Aligned_cols=199 Identities=21% Similarity=0.318 Sum_probs=165.3
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-ccceEEEecCCCCCCCCCCHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-PERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
+++|+|+.+++|++++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 457999999999999999999999999999999999987 999999999875432 2457999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
|+.+...... ... .+....++.+++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~~-~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN---------------------------------AEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhccC-Ccc---------------------------------HHHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 9987532100 000 001123566889999987766554 4699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~ 405 (1206)
|||||||+||++++.+|++++|||||+|||..++..+.+.|+++... .+++|+.++|..+++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999987643 34556667888888889999999999999998
Q ss_pred ecC
Q 000971 406 QGP 408 (1206)
Q Consensus 406 ~G~ 408 (1206)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=349.76 Aligned_cols=208 Identities=28% Similarity=0.424 Sum_probs=169.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
+++|+|+|+.++|||.++|+||+|||||||++.|+|.+++. +|+|.+||+++++... ++.++||+|++.+|. .
T Consensus 342 ~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~ 417 (567)
T COG1132 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-G 417 (567)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-c
Confidence 56999999999999999999999999999999999999997 9999999999988765 478999999887777 7
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+|||.++..- .+.++..+++... .+...+ ..|++..||.||+.+.
T Consensus 418 TI~~NI~~g~~~-------------------------at~eei~~a~k~a------~~~d~I--~~lp~g~dt~vge~G~ 464 (567)
T COG1132 418 TIRENIALGRPD-------------------------ATDEEIEEALKLA------NAHEFI--ANLPDGYDTIVGERGV 464 (567)
T ss_pred cHHHHHhcCCCC-------------------------CCHHHHHHHHHHh------ChHHHH--HhCcccccceecCCCc
Confidence 999999997421 0001111111110 011222 2357788999996554
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
.||||||||++||||++.+|+||+||||||+||+.+...|.+.++++. +++|+++ +.|..+.+. .+|+|+||++|
T Consensus 465 -~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRlsti~-~aD~IiVl~~G 539 (567)
T COG1132 465 -NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRLSTIK-NADRIIVLDNG 539 (567)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccHhHHH-hCCEEEEEECC
Confidence 799999999999999999999999999999999999999999998764 3467777 556554444 49999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
++++.|+++++..
T Consensus 540 ~i~e~G~h~eLl~ 552 (567)
T COG1132 540 RIVERGTHEELLA 552 (567)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=287.16 Aligned_cols=234 Identities=25% Similarity=0.301 Sum_probs=198.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+..+|+++++.. ++.+|++||++|++||+.|||||||||||||.++|+|.....+++|+|.++|.++
T Consensus 3 ~L~I~dLhv~v~~------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVEG------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEecC------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 4788999998852 2479999999999999999999999999999999999987778899999999986
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCC
Q 000971 908 KQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLS 982 (1206)
Q Consensus 908 ~~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LS 982 (1206)
.. ...+.-+...+|.|.-.|..|+.+-|..+...+........+....+++.++.+++.+ +.++.+. .++|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 43 2345567889999999999999999987655433221113345667899999999998 6777665 3799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhc--CeEEEEecCcEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAF--DELFLMKRGGQE 1060 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~--d~v~ll~~gg~~ 1060 (1206)
||||||..|+..++.+|++.+||||-||||..+-+.|-+.+..+++.|++++++||.. .+..+. |++.+|.+ |++
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrI 223 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRI 223 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999999999999995 467776 99999996 799
Q ss_pred EEEcCCCcchhHHHHHHHhCCCcccC
Q 000971 1061 IYVGPLGRHSCQLISYFEAIPGVEKI 1086 (1206)
Q Consensus 1061 ~~~g~~~~~~~~~~~yf~~~~g~~~~ 1086 (1206)
+..|.. ++..+++.. |+..|
T Consensus 224 v~sG~~-----el~~~le~~-gy~~~ 243 (251)
T COG0396 224 VKSGDP-----ELAEELEEK-GYDWL 243 (251)
T ss_pred EecCCH-----HHHHHHHHh-chHHh
Confidence 999984 688888885 55433
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=313.88 Aligned_cols=209 Identities=25% Similarity=0.384 Sum_probs=170.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++++ +|+|.++|.++..... ++.++|++|+...++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999999887 9999999998754332 34699999998888899
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||.||+.|+..... ..+. ... .+....++.+++.+||++..++.+
T Consensus 92 tv~~~i~~~~~~~~--~~~~----------------~~~------------~~~~~~~~~~l~~~~l~~~~~~~~----- 136 (255)
T PRK11231 92 TVRELVAYGRSPWL--SLWG----------------RLS------------AEDNARVNQAMEQTRINHLADRRL----- 136 (255)
T ss_pred cHHHHHHhccchhh--hhcc----------------CCC------------HHHHHHHHHHHHHcCCHHHHcCCc-----
Confidence 99999988531000 0000 000 001123567888999987777655
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
+.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.. . +++|+.++|..+++.+++|+|++|++|
T Consensus 137 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-Q-GKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998754 3 455666788888999999999999999
Q ss_pred eEEEecChHHHH
Q 000971 402 QIVYQGPRELVL 413 (1206)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1206)
++++.|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999987653
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=320.20 Aligned_cols=238 Identities=28% Similarity=0.439 Sum_probs=191.5
Q ss_pred HHhhcCCCCCcceEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCCCcccceEeeceeeeEeCCeEEEEEc
Q 000971 106 RIDRVGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLG 185 (1206)
Q Consensus 106 ~~~~~~~~~p~~~v~f~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilG 185 (1206)
+..++.++-|+-.+..|++++-.. ..++++|+|+||.+.||+-++|+|
T Consensus 322 ~~~~m~LP~P~g~L~Ve~l~~~PP--------------------------------g~~~pil~~isF~l~~G~~lgIIG 369 (580)
T COG4618 322 AAERMPLPAPQGALSVERLTAAPP--------------------------------GQKKPILKGISFALQAGEALGIIG 369 (580)
T ss_pred ccCCCCCCCCCceeeEeeeeecCC--------------------------------CCCCcceecceeEecCCceEEEEC
Confidence 334566666777788888877321 234679999999999999999999
Q ss_pred CCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc---ceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhhH
Q 000971 186 PPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262 (1206)
Q Consensus 186 p~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~~~~~ 262 (1206)
|||||||||.++|.|..+|. +|.|.+||.+++.+++. +.+||.||+-.+|+. ||.|||. |+.
T Consensus 370 PSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa---Rf~-------- 434 (580)
T COG4618 370 PSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA---RFG-------- 434 (580)
T ss_pred CCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHH---hcc--------
Confidence 99999999999999999987 99999999999988765 789999998777765 9999995 221
Q ss_pred hHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHHhcCC
Q 000971 263 LTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342 (1206)
Q Consensus 263 ~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~ 342 (1206)
++.|.+...+|+...+ ..| -++.|++.+||.||+.+. +||||||||+++|||++++|
T Consensus 435 --------------~~~d~~kIieAA~lAg-----vHe---lIl~lP~GYdT~iG~~G~-~LSgGQRQRIaLARAlYG~P 491 (580)
T COG4618 435 --------------EEADPEKVIEAARLAG-----VHE---LILRLPQGYDTRIGEGGA-TLSGGQRQRIALARALYGDP 491 (580)
T ss_pred --------------ccCCHHHHHHHHHHcC-----hHH---HHHhCcCCccCccCCCCC-CCCchHHHHHHHHHHHcCCC
Confidence 1223333333322211 112 256799999999998765 89999999999999999999
Q ss_pred ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEecChHHHHHHH
Q 000971 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFF 416 (1206)
Q Consensus 343 ~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~f 416 (1206)
.+++||||-|.||+.-...+.+.|.... ..++|+|+..|. +.+...+|+|++|++|++-.+||++|++...
T Consensus 492 ~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvviaHR--Ps~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 492 FLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHR--PSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEecC--HHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999999999998864 456666664443 4688899999999999999999999998753
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=314.07 Aligned_cols=210 Identities=24% Similarity=0.370 Sum_probs=164.6
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.++ +.+.+|+|+|++|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~g~~~~ 66 (236)
T cd03253 1 IEFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV--SSGSILIDGQDIR 66 (236)
T ss_pred CEEEEEEEEeC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEhh
Confidence 35788887763 123599999999999999999999999999999999998653 4799999997653
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-C-----CCCCC
Q 000971 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-G-----LPGVS 979 (1206)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-g-----~~~~~ 979 (1206)
. ..+++.++|++|++.+++ .||+||+.+... ....+ .+.+.++.+++.+..+.+. | ...+.
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~----~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 136 (236)
T cd03253 67 EVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDE----EVIEAAKAAQIHDKIMRFPDGYDTIVGERGL 136 (236)
T ss_pred hCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHH----HHHHHHHHcCcHHHHHhccccccchhhcCCC
Confidence 2 234567999999988775 699999987531 11111 1344455555544332221 1 11246
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
.||+|||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ |.|||+++|++. .+ ..+|++++|++ |+
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g~ 212 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-GR 212 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999876 999999999986 35 45999999986 68
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|+.
T Consensus 213 i~~~~~~ 219 (236)
T cd03253 213 IVERGTH 219 (236)
T ss_pred EEeeCCH
Confidence 8888764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=351.79 Aligned_cols=209 Identities=22% Similarity=0.379 Sum_probs=166.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 45999999999999999999999999999999999999997 9999999999987654 467999999987776 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
|++|||.++..-. .+.+...+++... -.+..++ .|++..||.+|+.+
T Consensus 432 Ti~~Ni~~~~~~~------------------------~~~~~i~~al~~~------~l~~~i~--~lp~Gldt~ig~~g- 478 (582)
T PRK11176 432 TIANNIAYARTEQ------------------------YSREQIEEAARMA------YAMDFIN--KMDNGLDTVIGENG- 478 (582)
T ss_pred hHHHHHhcCCCCC------------------------CCHHHHHHHHHHh------CcHHHHH--hcccccCceeCCCC-
Confidence 9999998753100 0101111111000 0111222 35677899999865
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..||||||||++|||+|+++|+|++||||||+||+.++..+.+.|+++. .++|+|+. +|.. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~V-tHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVI-AHRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEE-ecch-HHHHhCCEEEEEECC
Confidence 4799999999999999999999999999999999999999999998763 34566654 4444 567789999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
++++.|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998864
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=300.50 Aligned_cols=183 Identities=25% Similarity=0.307 Sum_probs=153.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.++ ++.+|+|+||++++||++||+|+||||||||+++|+|.....+.+|+|.+||.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 1 LEIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67 (200)
T ss_pred CeEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC
Confidence 35788887763 24699999999999999999999999999999999997311135799999998764
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 909 QE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 909 ~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
.. . .++.++|++|++.+++..|+++++ +.. ...||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~-----~~~LS~G 108 (200)
T cd03217 68 DLPPEERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYV-----NEGFSGG 108 (200)
T ss_pred cCCHHHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhc-----cccCCHH
Confidence 31 1 234599999998888888887765 000 1369999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHH-hcCeEEEEecCcEEEEE
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFD-AFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~-~~d~v~ll~~gg~~~~~ 1063 (1206)
||||++|||+|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+ .+|++++|++ |+++..
T Consensus 109 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~ 186 (200)
T cd03217 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKS 186 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999877999999999986 4555 6999999985 788888
Q ss_pred cC
Q 000971 1064 GP 1065 (1206)
Q Consensus 1064 g~ 1065 (1206)
|+
T Consensus 187 ~~ 188 (200)
T cd03217 187 GD 188 (200)
T ss_pred cc
Confidence 85
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=312.75 Aligned_cols=209 Identities=23% Similarity=0.353 Sum_probs=165.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|+++.++.. ++..+|+++|+.|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCCch
Confidence 48899999887521 113599999999999999999999999999999999998663 479999999865
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc--CCccccccccCCCCCCCCC
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV--ELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l--~L~~~~~~~~g~~~~~~LS 982 (1206)
.. ..+++.++|++|++.+++ .||+||+.+..................+++.++.+ |+.+..+.. +..||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~LS 152 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GSQLS 152 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CCcCC
Confidence 32 223567999999987775 69999998753211000000011112356778888 777665554 45799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++ ..+|++++|++|
T Consensus 153 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~g 224 (226)
T cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDGG 224 (226)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecCC
Confidence 9999999999999999999999999999999999999999999865 699999999987 45 459999999864
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=310.30 Aligned_cols=210 Identities=18% Similarity=0.249 Sum_probs=164.9
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCeeCCCC--C---ccceEEEecCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF--V---PERTAAYISQHDNHI 238 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~nG~~~~~~--~---~~~~~~yv~Q~d~~~ 238 (1206)
++|+|+|+.|++|++++|+|||||||||||++|+|.++ |....+|+|.++|.++... . .++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 58999999999999999999999999999999999986 2112389999999987531 1 135799999998778
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+ +||+||+.+.......... .+....++.+++.+||........ +
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 151 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLSR---------------------------------AEMDERVEWALTKAALWNEVKDKL-H 151 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCCH---------------------------------HHHHHHHHHHHHHcCCChhhHHHH-h
Confidence 7 8999999886532210000 001123566788888742111111 1
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
.....|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++. .+ ++|+.++|...++.+++|+|++|
T Consensus 152 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 152 QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK--QD-YTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCEEEEE
Confidence 2345799999999999999999999999999999999999999999999874 24 45666778888888999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+.+++.
T Consensus 229 ~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 229 YLGELIEFGNTDTIF 243 (260)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=350.47 Aligned_cols=206 Identities=21% Similarity=0.275 Sum_probs=166.6
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1206)
++|+|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++..+ ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 5899999999999999999999999999999999999998 9999999999987665 4789999999988876 9
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
++|||.++.. . . .+.+.+.++ + . -.++.++ .|++..||.+|+.+ .
T Consensus 431 i~~NI~~~~~---~-~-d~~i~~a~~------------------~---~------gl~~~i~--~lp~Gldt~i~e~g-~ 475 (592)
T PRK10790 431 FLANVTLGRD---I-S-EEQVWQALE------------------T---V------QLAELAR--SLPDGLYTPLGEQG-N 475 (592)
T ss_pred HHHHHHhCCC---C-C-HHHHHHHHH------------------H---c------CcHHHHH--hccccccccccCCC-C
Confidence 9999998631 0 0 011111110 0 0 0111222 25667799999865 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.||||||||++|||||+.+|+|++||||||+||+.+...|.+.|+++. .++|+|+..|++ +....||+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~--~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRL--STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999998864 346766655554 5567799999999999
Q ss_pred EEEecChHHHHH
Q 000971 403 IVYQGPRELVLE 414 (1206)
Q Consensus 403 iv~~G~~~~~~~ 414 (1206)
++..|+++++.+
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=306.03 Aligned_cols=195 Identities=22% Similarity=0.368 Sum_probs=161.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC--C---ccceEEEecCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF--V---PERTAAYISQHDNHIG 239 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~--~---~~~~~~yv~Q~d~~~~ 239 (1206)
..+|+++|+.++||++++|+|||||||||||++|+|.++++ +|+|.++|.++... . .++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 45999999999999999999999999999999999999887 99999999987421 1 1357999999998999
Q ss_pred CCCHHHHHHHHhh-hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 240 EMTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 240 ~lTV~Etl~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
.+||+||+.++.. .++... .+....++.+++.+||++..+..+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 133 (213)
T cd03262 90 HLTVLENITLAPIKVKGMSK----------------------------------AEAEERALELLEKVGLADKADAYP-- 133 (213)
T ss_pred CCcHHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhhCc--
Confidence 9999999988642 111000 011123566788999987666654
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
..|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.. .+ ++|+.++|...++.+++|+|++|
T Consensus 134 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 134 ---AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred ---cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999998864 34 45666788888999999999999
Q ss_pred cCCeE
Q 000971 399 SDGQI 403 (1206)
Q Consensus 399 ~~G~i 403 (1206)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=312.36 Aligned_cols=208 Identities=28% Similarity=0.405 Sum_probs=170.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
..+|+|+|+.+++|++++|+|||||||||||++|+|.++++ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 46999999999999999999999999999999999999987 9999999998765432 24689999998778889
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.++..... .... .+ . .+....++.+++.+||.+..++.++
T Consensus 91 tv~e~l~~~~~~~~---------~~~~-------~~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 136 (256)
T TIGR03873 91 TVRDVVALGRIPHR---------SLWA-------GD-S-------------PHDAAVVDRALARTELSHLADRDMS---- 136 (256)
T ss_pred CHHHHHHhcchhhh---------hhcc-------CC-C-------------HHHHHHHHHHHHHcCcHhhhcCCcc----
Confidence 99999988531000 0000 00 0 0011235678889999876666554
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.. . +++|+.++|..+++.+++|+|++|++|
T Consensus 137 -~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 137 -TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-T-GVTVVAALHDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 6999999999999999999999999999999999999999999998753 3 455666788888999999999999999
Q ss_pred eEEEecChHHH
Q 000971 402 QIVYQGPRELV 412 (1206)
Q Consensus 402 ~iv~~G~~~~~ 412 (1206)
++++.|+.+++
T Consensus 214 ~i~~~g~~~~~ 224 (256)
T TIGR03873 214 RVVAAGPPREV 224 (256)
T ss_pred CEEEecCHHHh
Confidence 99999998765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=305.43 Aligned_cols=194 Identities=24% Similarity=0.334 Sum_probs=160.3
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC--CCCCHHHHHHHhh
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTVYESLLYSA 939 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~~Tv~e~l~~~a 939 (1206)
|+|++|+++||+|+||||||||+++|+|..++ .+|+|.++|.+... .++.++|++|++.++ ..+|+.|++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 46899999999999999999999999998663 47999999987532 345689999998664 3479999998753
Q ss_pred hhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 000971 940 WLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018 (1206)
Q Consensus 940 ~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~ 1018 (1206)
..... ........+..+.++++.+++.+..+..+ ..||+|||||++||++|+.+|++|||||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 00111233456889999999988777764 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 1019 VMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1019 i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
+.+.|+++.++|.|||+++|+++ ++.+.+|+++++ + |++++.|+..
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~ 197 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence 99999999877999999999987 578899999999 5 7999998853
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=309.51 Aligned_cols=211 Identities=20% Similarity=0.318 Sum_probs=166.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCeeCCCCC-----ccceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFV-----PERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1206)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.+++. ...+|+|.++|.++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 35899999999999999999999999999999999998641 113899999999875421 13569999999888
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++ +||+||+.|.....+.... .+....++.+++.+||........
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 141 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDDL- 141 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-
Confidence 87 8999999986543221000 001123456778888742110111
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
+...+.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. + .+|+.++|...++.++||+|++
T Consensus 142 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d~v~~ 218 (251)
T PRK14270 142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSDYTAF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcCEEEE
Confidence 234557999999999999999999999999999999999999999999998753 3 4555577778889999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|++++.|+.+++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 219 FLMGDLIEFNKTEKIF 234 (251)
T ss_pred EECCeEEEeCCHHHHh
Confidence 9999999999998764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=312.40 Aligned_cols=211 Identities=21% Similarity=0.325 Sum_probs=166.4
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCeeCCCC--C---ccceEEEecCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEF--V---PERTAAYISQHDNHI 238 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~nG~~~~~~--~---~~~~~~yv~Q~d~~~ 238 (1206)
.+|+|+|+.|+||++++|+|||||||||||++|+|.+++. ...+|+|.++|.++... . .++.++|++|++..+
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 5999999999999999999999999999999999998741 01389999999987532 1 135799999998888
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+. ||.||+.|+...++.... . .+....++.+++.+||.+...... +
T Consensus 113 ~~-tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 158 (267)
T PRK14235 113 PK-SIYENVAYGPRIHGLARS--------K------------------------AELDEIVETSLRKAGLWEEVKDRL-H 158 (267)
T ss_pred CC-cHHHHHHHHHHhcccccc--------h------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 75 999999987543221000 0 001123566788899864221111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
..++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ + .+|+.++|+..++..++|++++|
T Consensus 159 ~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHHhhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998753 3 45566778888888999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|+++++|+.+++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 236 HLGNLVEVGDTEKMF 250 (267)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=311.23 Aligned_cols=212 Identities=21% Similarity=0.336 Sum_probs=167.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCeeCCCC-----CccceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1206)
.++|+|+|+.|++|++++|+|||||||||||++|+|.++|.- ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 359999999999999999999999999999999999986410 1389999999887421 123579999999989
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++.+||+||+.++....+.... .+....++.+++.+||........
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRNK---------------------------------KDLDELVEKSLRGANLWNEVKDRL- 142 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-
Confidence 9999999999886543211000 011223566788888842111111
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
+..+..|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++++ + .+|+.++|...++.+++|+|++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~~~~d~i~~ 219 (258)
T PRK14241 143 DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAARVSDQTAF 219 (258)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhCCEEEE
Confidence 233457999999999999999999999999999999999999999999998743 3 4566678888889999999999
Q ss_pred Ec------CCeEEEecChHHHH
Q 000971 398 LS------DGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~------~G~iv~~G~~~~~~ 413 (1206)
|+ +|++++.|+++++.
T Consensus 220 l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 220 FNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EecccCCCCceEEecCCHHHHH
Confidence 96 79999999988764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=310.09 Aligned_cols=210 Identities=18% Similarity=0.265 Sum_probs=166.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC---CCCCCceeEEEECCeeCCCCC-----ccceEEEecCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL---DSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDN 236 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l---~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~ 236 (1206)
+++|+|+|+.|++|++++|+|||||||||||++|+|.. ++. ..+|+|.++|.++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 45999999999999999999999999999999999973 331 13899999999876421 1356999999988
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1206)
.++ .||+||+.++.+..+.... ......++++++.+||.+...+..
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDN---------------------------------AFIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchhhhh
Confidence 787 6999999886543211000 001123567788899865322222
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
+..++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++. .+ .+|+.++|+..++.++||+|+
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KD-YTIVIVTHNMQQAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhCCEEE
Confidence 23455799999999999999999999999999999999999999999999874 34 455667788888999999999
Q ss_pred EEcCCeEEEecChHHHH
Q 000971 397 LLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1206)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998874
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=310.47 Aligned_cols=207 Identities=24% Similarity=0.351 Sum_probs=168.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCee-----CCCCCc-------cceEEEec
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD-----MGEFVP-------ERTAAYIS 232 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~-----~~~~~~-------~~~~~yv~ 232 (1206)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 35999999999999999999999999999999999999987 9999999987 654322 23599999
Q ss_pred CCC--CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc
Q 000971 233 QHD--NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV 310 (1206)
Q Consensus 233 Q~d--~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 310 (1206)
|++ .+++.+|+.||+.+......... + .+....++++++.+|+..
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~~-~--------------------------------~~~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGARH-Y--------------------------------GDIRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccCc-H--------------------------------HHHHHHHHHHHHHcCCCh
Confidence 986 36788899999976432111000 0 001223567889999974
Q ss_pred -cccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHH
Q 000971 311 -CADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389 (1206)
Q Consensus 311 -~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~ 389 (1206)
..++.+ ..|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++... .+.+|+.++|...++.
T Consensus 143 ~~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~isH~~~~~~ 216 (258)
T PRK11701 143 ARIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVIVTHDLAVAR 216 (258)
T ss_pred hHHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHH
Confidence 455444 479999999999999999999999999999999999999999999987653 3456666888888999
Q ss_pred hhcCeEEEEcCCeEEEecChHHHH
Q 000971 390 DLFDDIILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 390 ~~fD~vilL~~G~iv~~G~~~~~~ 413 (1206)
+.+|+|++|++|++++.|+++++.
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999988763
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=347.90 Aligned_cols=213 Identities=29% Similarity=0.432 Sum_probs=175.3
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++|++|.|+. +++.+|+|+|++++||+.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 315 ~~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 381 (544)
T TIGR01842 315 GHLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGAD 381 (544)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEe
Confidence 36999999999852 124689999999999999999999999999999999998764 47999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
... ..+++.++||+|++.+++. |++||+.+.. .+.+.+ .++++++..++.+.. |+.+|..
T Consensus 382 i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~ 451 (544)
T TIGR01842 382 LKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPE----KIIEAAKLAGVHELILRLPDGYDTVIGPG 451 (544)
T ss_pred hhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHH----HHHHHHHHhChHHHHHhCccccccccCCC
Confidence 643 3456789999999988875 9999997532 122222 355666666655433 3445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
...||||||||++|||||+++|++|+|||||||||+.++..+++.|+++..+|+|||+++|+++ ..+.+|++++|++
T Consensus 452 -g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~ 528 (544)
T TIGR01842 452 -GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD 528 (544)
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 4679999999999999999999999999999999999999999999998666899999999986 4678999999986
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 529 -G~i~~~g~~ 537 (544)
T TIGR01842 529 -GRIARFGER 537 (544)
T ss_pred -CEEEeeCCH
Confidence 799999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=297.05 Aligned_cols=176 Identities=27% Similarity=0.461 Sum_probs=149.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.++. ....+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEHH
Confidence 357888877641 112599999999999999999999999999999999998663 4799999998653
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
. ..+++.++|++|++.+++ .|++||+ +..||+|||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~ 104 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGER 104 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHH
Confidence 2 234567899999987765 6888876 136999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|++. .+ +.+|++++|++ |++++.|
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLEN-GKIIMQG 178 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999985 5899999999987 34 56999999985 6877654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=308.35 Aligned_cols=212 Identities=21% Similarity=0.294 Sum_probs=168.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCeeCCCC-----CccceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1206)
..+|+|+|+.|++|++++|+|||||||||||++|+|.++ |....+|+|.++|.++... ..++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 359999999999999999999999999999999999986 3111389999999987532 124579999999989
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++.+||+||+.++.+..+.... .+....++.+++.+||........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNR---------------------------------SEADEIVESSLKRVALWDEVKDRL- 142 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 9999999999876432110000 001123566788888864211111
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
+..+..|||||||||+||++++.+|++++|||||+|||..+...+.+.|+++.. + ++|+.++|..+++.++||++++
T Consensus 143 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 143 KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEE
Confidence 123557999999999999999999999999999999999999999999999853 3 4566677888899999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|++++.|+.+++.
T Consensus 220 l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 220 FYMGDLVECGETKKIF 235 (252)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988763
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=338.16 Aligned_cols=123 Identities=23% Similarity=0.292 Sum_probs=99.8
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCCCCHHHHHHHHHHHHHhh---CCcEEE
Q 000971 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 1003 (1206)
Q Consensus 928 ~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~~~LSgGqrqrl~ia~aL~~---~P~iL~ 1003 (1206)
.+||.|.+.|...+. .. ....++|+.+||... .++. ...|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 357777776654331 01 124578888999753 4444 35799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe-----cCcEEEEEcCC
Q 000971 1004 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1066 (1206)
Q Consensus 1004 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~-----~gg~~~~~g~~ 1066 (1206)
|||||+|||+.....+++.|+++.+.|.|||+++|++. +...+|+++.|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999986 346799999994 57899999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=307.64 Aligned_cols=212 Identities=19% Similarity=0.274 Sum_probs=167.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
+.+|+|+|+.+++|++++|+||||||||||+++|+|.+++....+|+|.++|+++..... ++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 469999999999999999999999999999999999975311238999999998865432 357999999988887 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.++...++.... . ......++.+++.+||........ +...
T Consensus 94 tv~eni~~~~~~~~~~~~-------------------~-------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIKN-------------------K-------------DEEEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCcccC-------------------h-------------HHHHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 999999986433211000 0 001123456788899853211111 2345
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
+.|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++. .+ ++|+.++|..+++.+.+|+|++|++|
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS--HN-LSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--CC-CEEEEEecCHHHHHhhCcEEEEEECC
Confidence 6799999999999999999999999999999999999999999999874 24 55666788888899999999999999
Q ss_pred eEEEecChHHHH
Q 000971 402 QIVYQGPRELVL 413 (1206)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1206)
++++.|+.+++.
T Consensus 218 ~i~~~g~~~~~~ 229 (246)
T PRK14269 218 ELIEFGESKEFF 229 (246)
T ss_pred EEEEECCHHHHH
Confidence 999999988763
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=351.29 Aligned_cols=211 Identities=25% Similarity=0.370 Sum_probs=176.8
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+|.++. ++.+|+|+|++++||+++||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~ 398 (588)
T PRK13657 333 GAVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTD 398 (588)
T ss_pred CeEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 36999999999851 13499999999999999999999999999999999998774 48999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.. ..+++.++||+|++.+++ -|++||+.++. + +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~ 468 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR----P-DAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGER 468 (588)
T ss_pred hhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC----C-CCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCC
Confidence 654 356778999999998876 69999998752 1 222 23477788888876544 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
...||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. .++|||++||+++ ..+.+|++++|++
T Consensus 469 -g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~ 544 (588)
T PRK13657 469 -GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDN 544 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999874 4799999999985 5688999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 545 -G~i~~~g~~ 553 (588)
T PRK13657 545 -GRVVESGSF 553 (588)
T ss_pred -CEEEEeCCH
Confidence 788888873
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=308.49 Aligned_cols=210 Identities=21% Similarity=0.334 Sum_probs=165.2
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCeeCCCC-----CccceEEEecCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNHI 238 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1206)
.+|+|+|+.|++|++++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++|++|++..+
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 58999999999999999999999999999999999853 4222389999999987432 1245799999998777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+ +||+||+.++....+.... ......++.+++.+|+.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKDK---------------------------------QVLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhHHHHH-h
Confidence 7 8999999986543221000 001123456677787743211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
..++.|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++.+ + .+|+.++|+.+++.+.||+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998743 3 45666778888899999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=301.87 Aligned_cols=192 Identities=27% Similarity=0.393 Sum_probs=160.4
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-------ccceEEEecCCCCCCCCCC
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1206)
|+|+.|++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999987 999999998875311 1357999999998899999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.+...... . . .....++.+++.+||++..+..+ +
T Consensus 92 ~~~~l~~~~~~~~---~--------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (214)
T cd03297 92 VRENLAFGLKRKR---N--------R-------------------------EDRISVDELLDLLGLDHLLNRYP-----A 130 (214)
T ss_pred HHHHHHHHHhhCC---H--------H-------------------------HHHHHHHHHHHHcCCHhHhhcCc-----c
Confidence 9999987642110 0 0 01123566788999987666544 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|++++... +++|+.++|..+++.+++|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL-NIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999886533 4556667888888999999999999999
Q ss_pred EEEec
Q 000971 403 IVYQG 407 (1206)
Q Consensus 403 iv~~G 407 (1206)
+++.|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=295.00 Aligned_cols=168 Identities=27% Similarity=0.449 Sum_probs=145.5
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.++. .+..+++++|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (173)
T cd03246 1 LEVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADIS 67 (173)
T ss_pred CEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcc
Confidence 357888877641 123599999999999999999999999999999999998663 4799999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
. ..+++.++|++|++.+++ .||+||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~ 101 (173)
T cd03246 68 QWDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQ 101 (173)
T ss_pred cCCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHH
Confidence 2 234567999999987776 4998876 89999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
|||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. .+ +.+|++++|++|
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G 171 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDG 171 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999986 34 689999999864
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=309.94 Aligned_cols=211 Identities=18% Similarity=0.305 Sum_probs=165.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCeeCCCC-----CccceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1206)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++ |....+|+|.++|.++... ..++.++|++|++.+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 358999999999999999999999999999999999986 3212489999999987531 113569999999888
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++. ||+||+.|.....+.... .+....++.+++.+||.+......
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l- 149 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKNK---------------------------------KKLQEIVEKSLKDVALWDEVKDRL- 149 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhhh-
Confidence 875 999999886433211000 001123456778888753211111
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
+...+.|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++. .+ .+++.++|..+++.+++|+|++
T Consensus 150 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~i~~ 226 (259)
T PRK14274 150 HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK--EK-YTIVIVTHNMQQAARVSDQTAF 226 (259)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEEcCHHHHHHhCCEEEE
Confidence 23455799999999999999999999999999999999999999999999874 24 4555577778889999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|+++.+|+++++.
T Consensus 227 l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 227 FYMGELVECNDTNKMF 242 (259)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999998763
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=279.47 Aligned_cols=204 Identities=23% Similarity=0.334 Sum_probs=174.6
Q ss_pred CceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC-------------c---ccccce
Q 000971 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK-------------Q---ETFARI 915 (1206)
Q Consensus 852 ~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~-------------~---~~~~~~ 915 (1206)
+...+|++||+..+.|+++.|+|.|||||||+|+||.-..++ ..|.|.+||..+. . ...+..
T Consensus 17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P--~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC--CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 456799999999999999999999999999999999876553 4799999996431 0 112345
Q ss_pred EEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 000971 916 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVEL 995 (1206)
Q Consensus 916 ~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL 995 (1206)
.|+|+|+..++..+||.||+.-.-.-- ...++.+..++.+..|..+|+.+.++.++ ..|||||+||++|||||
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aIARaL 167 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAIARAL 167 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHHHHHH
Confidence 799999999999999999997432111 23456777788899999999999999874 57999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 996 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 996 ~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
+.+|++++.|||||.|||+---++++.+++++++|+|.+++||.+.. ..+...+|+.|.+ |.+-..|++
T Consensus 168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P 236 (256)
T COG4598 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPP 236 (256)
T ss_pred hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCCh
Confidence 99999999999999999999999999999999999999999999864 5567889999996 789899986
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=356.71 Aligned_cols=206 Identities=23% Similarity=0.318 Sum_probs=164.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||.+++++.. ++.++||+|++.+|+ .
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-G 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-c
Confidence 45899999999999999999999999999999999999998 9999999999987664 478999999987775 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
|++|||.++.. +.+.+...+++...+ .+..+ -.|+...||.+|+.+
T Consensus 568 Ti~eNi~l~~~-------------------------~~~~~~i~~al~~~~------l~~~i--~~lp~gl~t~i~e~G- 613 (710)
T TIGR03796 568 TVRDNLTLWDP-------------------------TIPDADLVRACKDAA------IHDVI--TSRPGGYDAELAEGG- 613 (710)
T ss_pred cHHHHhhCCCC-------------------------CCCHHHHHHHHHHhC------CHHHH--HhCcCcccceeccCC-
Confidence 99999987421 001111111111000 11111 235667789999765
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
.+||||||||++||||++++|+|++||||||+||+.+...|.+.|++ .++|+|+ ++|.. +....||+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Ii-itHrl-~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCII-VAHRL-STIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEE-EecCH-HHHHhCCEEEEEeCC
Confidence 58999999999999999999999999999999999999999999975 3556665 45554 455679999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
++++.|+++++.+
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=299.40 Aligned_cols=195 Identities=27% Similarity=0.408 Sum_probs=170.8
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC------c-cceEEEecCCCCCCCCCC
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------P-ERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~------~-~~~~~yv~Q~d~~~~~lT 242 (1206)
++++..+.-.+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+.. + +|.+|||+|+..+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 578888776799999999999999999999999998 999999998764322 2 478999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+-||.|+.... .....|.+.+.||++|..+.. +.
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~-----P~ 127 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRY-----PG 127 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhC-----CC
Confidence 999999975321 011246788999999988754 45
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+|||||++.|++|+||||.+.||-....+|+-.|.++.+. -+.-|+.++|-..|+.+++|+|++|++|+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e-~~IPIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE-INIPILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHh-cCCCEEEEecCHHHHHhhhheEEEecCCe
Confidence 79999999999999999999999999999999999999999999998764 46777889999999999999999999999
Q ss_pred EEEecChHHHH
Q 000971 403 IVYQGPRELVL 413 (1206)
Q Consensus 403 iv~~G~~~~~~ 413 (1206)
+...|+.+++.
T Consensus 207 V~A~g~~e~v~ 217 (352)
T COG4148 207 VKASGPLEEVW 217 (352)
T ss_pred EEecCcHHHHh
Confidence 99999999875
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=307.76 Aligned_cols=206 Identities=24% Similarity=0.282 Sum_probs=166.0
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCeeCCCCCcc-ceEEEecCCCC--CCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGEFVPE-RTAAYISQHDN--HIGEM 241 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~-~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~--~~~~l 241 (1206)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++|.. ..+|+|.++|.++...... +.++|++|++. +.+.+
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 48999999999999999999999999999999999998710 0289999999987643222 56999999974 45678
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc---cccccccC
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV---CADTMVGD 318 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~vg~ 318 (1206)
|+.+++.+.+...+.. . ....+..+++.+||.+ ..++
T Consensus 97 ~~~~~~~~~~~~~~~~-~-----------------------------------~~~~~~~~l~~~~l~~~~~~~~~---- 136 (254)
T PRK10418 97 TMHTHARETCLALGKP-A-----------------------------------DDATLTAALEAVGLENAARVLKL---- 136 (254)
T ss_pred cHHHHHHHHHHHcCCC-h-----------------------------------HHHHHHHHHHHcCCCChhhhhhc----
Confidence 9999987643321100 0 0123566788999975 2343
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
.+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++. .+++|+.++|..+++.+.+|+|++|
T Consensus 137 -~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~~l 214 (254)
T PRK10418 137 -YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVAVM 214 (254)
T ss_pred -CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEEEE
Confidence 34579999999999999999999999999999999999999999999988653 3455666778888888999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988764
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=300.26 Aligned_cols=191 Identities=24% Similarity=0.399 Sum_probs=167.4
Q ss_pred cceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 000971 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 931 (1206)
Q Consensus 859 ~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~~Tv 931 (1206)
++++..+.--+|||-|+||||||||+|+|+|...+ .+|.|.+||.-... ..-+|.+|||+|+..+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP--deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP--DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc--cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 56777766479999999999999999999998775 48999999974321 2246889999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000971 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1206)
Q Consensus 932 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgL 1011 (1206)
+.||.|+.+.- .....+++.+++|+.++.++.. ..|||||||||+|||||++.|++|+||||.++|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999986532 2334789999999999999984 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 1012 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1012 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
|.....+++-.|.++.++ ..-|+.++|.+. |+..++|+|++|.+ |++..+|+.+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~-GkV~A~g~~e 214 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLEN-GKVKASGPLE 214 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecC-CeEEecCcHH
Confidence 999999999999999876 789999999987 89999999999985 7999999963
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=273.91 Aligned_cols=202 Identities=28% Similarity=0.377 Sum_probs=171.1
Q ss_pred CCcccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEec
Q 000971 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYIS 232 (1206)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~ 232 (1206)
....+.+||++|++.|++||-++|+|||||||||||-+|+|+-.++ +|+|.+-|+++..+.. .+.+++|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 3456789999999999999999999999999999999999999998 9999999999876543 26799999
Q ss_pred CCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc
Q 000971 233 QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA 312 (1206)
Q Consensus 233 Q~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1206)
|...++|+||..||+...+.+++-..+ +....+...|+.+||.+..
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRL 140 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCccccc
Confidence 999999999999999988776653211 0122355678999999876
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhc
Q 000971 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1206)
Q Consensus 313 dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~f 392 (1206)
+.. +..|||||+|||+||||++..|+|||-||||-.||..|..+|.+.|-.+.+. .+++++.++|+. .+..-|
T Consensus 141 ~Hy-----P~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~-~LA~Rc 213 (228)
T COG4181 141 THY-----PAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHDP-QLAARC 213 (228)
T ss_pred ccC-----ccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCCH-HHHHhh
Confidence 644 4579999999999999999999999999999999999999999999887664 456666667764 567789
Q ss_pred CeEEEEcCCeEEE
Q 000971 393 DDIILLSDGQIVY 405 (1206)
Q Consensus 393 D~vilL~~G~iv~ 405 (1206)
||++-|.+|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999874
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-33 Score=307.69 Aligned_cols=211 Identities=21% Similarity=0.346 Sum_probs=166.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCeeCCCC-----CccceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS--SLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~--~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1206)
..+|+|+|+.|++|++++|+|||||||||||++|+|.+++ ....+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 3589999999999999999999999999999999999874 111389999999887532 123579999999888
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++ +||+||+.++....+.... ......+++.++.+|+....+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK---------------------------------HKLDRIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCchhHHH-H
Confidence 87 8999999986532211000 00112345667778875321111 1
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
+..+..||||||||++||++++.+|++++|||||+|||..+...+.+.|+++.. + .+|+.++|..+++.+++|+|++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~~~d~i~~ 217 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIRIADYIAF 217 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHHhCCEEEE
Confidence 344568999999999999999999999999999999999999999999998742 4 4566677888888999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|+++..|+.+++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 218 MYRGELIEYGPTREIV 233 (250)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999988764
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=348.69 Aligned_cols=188 Identities=27% Similarity=0.438 Sum_probs=159.3
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+|+|+. ++.+|+|+|++++||+++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 46999999999852 12499999999999999999999999999999999998774 48999999987
Q ss_pred CCc--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCCC
Q 000971 907 KKQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLPG 977 (1206)
Q Consensus 907 ~~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~~ 977 (1206)
+.+ ..+++.++||+|++.+++ -|++||+.++. + +.+ ++.++++++..++.+.. |+.+|..|
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR----P-DAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred hhhHHHHHHhheEEEccCccccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 653 446678999999999886 59999998752 1 222 33478899998887643 55666644
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1040 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p 1040 (1206)
.+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|+|+++|++
T Consensus 469 -~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 469 -ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 5799999999999999999999999999999999999999999999863 579999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=308.16 Aligned_cols=212 Identities=20% Similarity=0.304 Sum_probs=166.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCeeCCCCC-----ccceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1206)
+++|+|+|+.|++|++++|+||||||||||+++|+|..+ +....+|+|.++|.++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999975 21123899999998875422 24579999999888
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++. ||+||+.+....++..... .+....++.+++.+||.+...+.+.
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNK--------------------------------KKLDEIVEKSLTSVGLWEELGDRLK 144 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCH--------------------------------HHHHHHHHHHHHHcCCCchhhhHhh
Confidence 885 9999998864322110000 0011235667889998653222222
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
..++.|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++. .+ .+|+.++|...++.+++|+|++
T Consensus 145 -~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 145 -DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KN-FTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred -cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhcCEEEE
Confidence 3455799999999999999999999999999999999999999999999874 34 5566677888888999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=296.89 Aligned_cols=175 Identities=29% Similarity=0.445 Sum_probs=146.4
Q ss_pred EEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-
Q 000971 831 FDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ- 909 (1206)
Q Consensus 831 ~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~- 909 (1206)
++|+++.++ ++.+|+|+|+.+++|++++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~~ 66 (180)
T cd03214 2 VENLSVGYG-------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLASL 66 (180)
T ss_pred eeEEEEEEC-------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCcC
Confidence 567777663 24599999999999999999999999999999999998664 47999999976532
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 910 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 910 --~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
..+++.++|++| +++.++|.+..++. +..||+||||
T Consensus 67 ~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~q 104 (180)
T cd03214 67 SPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FNELSGGERQ 104 (180)
T ss_pred CHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cccCCHHHHH
Confidence 122334566665 66777777665554 3579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEc
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g 1064 (1206)
|++|||+|+.+|++|+|||||+|||+.+...+++.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998776 899999999987 57789999999985 6777653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=309.76 Aligned_cols=211 Identities=24% Similarity=0.327 Sum_probs=168.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCeeCCCCC----ccceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFV----PERTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~~~ 238 (1206)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|. ...+|+|.++|.++.+.. .++.++|++|++.++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 46999999999999999999999999999999999998751 013899999999876432 245799999998888
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+ +||+||+.++......... .+....+..+++.+||.+..++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLVPR---------------------------------KEFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhHh-h
Confidence 7 8999999886432110000 011123456778888875432222 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
..+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. + .+|+.++|..+++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998753 3 46666788888999999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+++++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998774
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=352.66 Aligned_cols=206 Identities=23% Similarity=0.392 Sum_probs=161.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+|. .
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 46899999999999999999999999999999999999997 9999999999987654 468999999987765 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
|++|||.++.... +.+...+++...+ .+..++ .|++..||.+|+.+
T Consensus 570 TIreNI~~g~~~~-------------------------~~e~i~~al~~a~------l~~~i~--~lp~GldT~ige~G- 615 (711)
T TIGR00958 570 SVRENIAYGLTDT-------------------------PDEEIMAAAKAAN------AHDFIM--EFPNGYDTEVGEKG- 615 (711)
T ss_pred CHHHHHhcCCCCC-------------------------CHHHHHHHHHHcC------CHHHHH--hCCCccCCcccCCC-
Confidence 9999999863210 0011111111000 111222 35667899999765
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..||||||||++||||++++|+|++||||||+||+.+...+.+ ... ..++|+|+ ++|..+ +...+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIi-ItHrl~-~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLL-IAHRLS-TVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEE-EeccHH-HHHhCCEEEEEECC
Confidence 4799999999999999999999999999999999999998888 221 23455555 555544 56779999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
+++++|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999998864
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=352.24 Aligned_cols=208 Identities=28% Similarity=0.457 Sum_probs=167.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-G 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-h
Confidence 35899999999999999999999999999999999999998 9999999999987765 468999999987776 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
|++|||.++.. +.+.+...+++...+ .+..+ -.|++..||.+|+.+
T Consensus 554 TI~eNi~~~~~-------------------------~~~~~~i~~a~~~~~------l~~~i--~~lp~gl~T~i~e~G- 599 (694)
T TIGR03375 554 TLRDNIALGAP-------------------------YADDEEILRAAELAG------VTEFV--RRHPDGLDMQIGERG- 599 (694)
T ss_pred hHHHHHhCCCC-------------------------CCCHHHHHHHHHHcC------hHHHH--HhCcccccceecCCC-
Confidence 99999987521 011111111111100 11111 246677899999865
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..||||||||++||||++.+|++++||||||+||+.+...|.+.|+++. .++|+|+.. |.. ++...||+|++|++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiIt-Hrl-~~~~~~D~iivl~~G 675 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVT-HRT-SLLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEe-cCH-HHHHhCCEEEEEeCC
Confidence 4799999999999999999999999999999999999999999998864 356666644 444 456889999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
++++.|+++++++
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999998865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1206 | ||||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 4e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 5e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 6e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 9e-10 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-09 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-09 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-09 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 6e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 8e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 9e-08 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 9e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 6e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 6e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 6e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 7e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 6e-04 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 8e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 8e-06 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-05 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 5e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 5e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 8e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-05 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 9e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-04 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-04 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 3e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 5e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-04 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-04 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 6e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 7e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 8e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 9e-04 |
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1206 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-13 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-24 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-16 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-22 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 7e-20 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 5e-22 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 9e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-09 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-09 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-12 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-12 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-08 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-18 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-09 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-07 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-09 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-17 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-09 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-14 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 6e-15 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 9e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 3e-14 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 5e-05 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-13 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 5e-06 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-12 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-09 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-04 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 3e-11 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-07 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 3e-11 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 6e-11 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 6e-11 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 7e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-09 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 6e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-04 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 9e-09 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-08 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-08 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 5e-05 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-08 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 4e-08 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 5e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-04 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 7e-08 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 9e-05 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 6e-07 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-04 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-07 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-06 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 7e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 6e-06 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-06 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 5e-06 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-06 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 5e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-05 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 7e-05 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 3e-05 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 4e-05 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 5e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 3e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 7e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGY-PKKQETFA 913
L G+S G + L+G +GAGKTT + ++S + + G +T+ G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R Y + + E L + A + E +E E+ L I+
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKIKDR 143
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 1033 VVCTIH 1038
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 59/259 (22%), Positives = 90/259 (34%), Gaps = 65/259 (25%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE--- 221
ILK +S I+ G + L+GP +GKTT L ++ + S SG VT G ++ E
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 84
Query: 222 -------FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
++PE AY M E L F A S E+ A
Sbjct: 85 EVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYASSSS-----EIEEMVERA- 130
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
++ GL + + S G +++
Sbjct: 131 ----------------------------TEIAGLGE-----KIKDRVSTYSKGMVRKLLI 157
Query: 335 GEMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
++ P L +DE ++GLD ++ LKQ G ++ E L D
Sbjct: 158 ARALMVNPRL-AILDEPTSGLDVLNAREVRKILKQAS--QEGLTILVSSHNMLEVEFLCD 214
Query: 394 DIILLSDGQIVYQG-PREL 411
I L+ +G IV G EL
Sbjct: 215 RIALIHNGTIVETGTVEEL 233
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 36/220 (16%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETF 912
L L+ G + A++G +G GK+TL+D+L G R G I
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------V 64
Query: 913 ARISGYCEQNDIHSPF-VTVYESLL-----YSAWLRLPPEVDSETRKMFIEEVMELVELK 966
+ G+ Q SPF +V + +L + P D + + ++ + L
Sbjct: 65 YQSIGFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV----AMQALDYLNLT 119
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1025
L + + LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 120 HLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 1026 TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
TVV T HQP + ++ L+ + G
Sbjct: 175 AQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 35/254 (13%), Positives = 80/254 (31%), Gaps = 63/254 (24%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+ + ++ + G + +LG GK+TLL L G G++
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
++ ++ Q + +V + + G ++
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM------------------------GRST------HI 95
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA- 344
A + L L L A +SGG+R+ + ++ A+A
Sbjct: 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIAS 145
Query: 345 ----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL--LQPAPETYDLFDDIILL 398
+ +DE ++ LD + +++ L + T V + + + +LL
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLL 202
Query: 399 SDGQIVYQGPRELV 412
+ + R ++
Sbjct: 203 NKQNFKFGETRNIL 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 33/215 (15%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG-RKTGGYIT-GNITISGYPKKQETFA 913
L LSG R G + L+G +GAGK+TL+ ++G G I + + + A
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 914 RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
Y Q PF V+ L + +E + +V + L +
Sbjct: 73 LHRAYLSQ-QQTPPFATPVWHYLTLH----QHDKTRTEL----LNDVAGALALDDKLGRS 123
Query: 973 VGLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 124 T-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 1026 TVDTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1057
G +V + H D+ +L+K G
Sbjct: 179 LSQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 7e-20
Identities = 52/265 (19%), Positives = 81/265 (30%), Gaps = 74/265 (27%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T L +SG ++ G + L+GP +GK+TLL +AG G + + G + +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 69
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ A AY+SQ V L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL------------------------HQHDKTRTE 105
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV--------TT 334
+ L L+ +SGGE +RV T
Sbjct: 106 LLNDVAGA---------------LALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL--- 391
+ L L +DE LD + + L G A++ +DL
Sbjct: 146 PQANPAGQL-LLLDEPMNSLDVAQQSALDKILSALSQ--QGLAIVMSS------HDLNHT 196
Query: 392 ---FDDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 197 LRHAHRAWLLKGGKMLASGRREEVL 221
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 5e-22
Identities = 40/205 (19%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT---GNITISGYPKKQETFA 913
L ++ G + G +G GKTTL+ +S Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
+I + + I ++V + L A L + K I + +E VE+ L +
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK-- 130
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1032
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1033 VVCTIHQPGIDIFDAFDELFLMKRG 1057
++ + D + +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 9e-13
Identities = 37/249 (14%), Positives = 76/249 (30%), Gaps = 66/249 (26%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE---- 221
+L+ ++ I+ G + GP GKTTLL ++ L G + YNG + +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGK 79
Query: 222 --FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
F+PE +++V + L A GV + +
Sbjct: 80 IFFLPEEIIVP--------RKISVEDYLKAVASLYGVKVNKNEIMDA------------- 118
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
L+ + + + +S G +RV ++
Sbjct: 119 -----------------------LESVEVLDLKKK------LGELSQGTIRRVQLASTLL 149
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
+ +D+ +D + +++ + + + G +IS + E D L
Sbjct: 150 VNAEI-YVLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIIS----SREELSYCDVNENL 203
Query: 399 SDGQIVYQG 407
Sbjct: 204 HKYSTKIDK 212
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 6e-20
Identities = 48/241 (19%), Positives = 81/241 (33%), Gaps = 34/241 (14%)
Query: 797 GRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVL 856
G N I E + + L D + P K QG +
Sbjct: 313 GINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGD-----FV 367
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
LN G F + +MG +G GKTTL+ +L+G + G + +S P+K
Sbjct: 368 LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK------ 421
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
TV + F +V++ + + +I V
Sbjct: 422 -IAPKFPG-------TVRQLFFKKIR-------GQFLNPQFQTDVVKPLRIDDIIDQEV- 465
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1033
LS + +R+ I + L I +DEP++ LD+ I + +R + +T
Sbjct: 466 ----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521
Query: 1034 V 1034
Sbjct: 522 F 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 33/184 (17%), Positives = 69/184 (37%), Gaps = 23/184 (12%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT------------ISGYPKKQE 910
RPG + L+G +G GK+T + +L+G + G + Y K
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
+ Q + P L+L E ++ +++++L+ +++
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQLENVLK 216
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
+ LS + +R I + V + DEP+S LD + + +R+ +
Sbjct: 217 R-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 1031 RTVV 1034
+ V+
Sbjct: 272 KYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 43/264 (16%), Positives = 78/264 (29%), Gaps = 77/264 (29%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYN--------- 215
+ +PG++ L+G GK+T L LAGK +L + +
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS 150
Query: 216 ---GHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENE 272
+ + A Q+ ++I ++ + E
Sbjct: 151 ELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKV------------------GEL- 190
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332
+ +++ Y+K+L LE V I +SGGE +R
Sbjct: 191 ---------------LKLRMEKSPEDVKRYIKILQLE-----NVLKRDIEKLSGGELQRF 230
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI------SL 381
+G + DE S+ LD ++ + VI S+
Sbjct: 231 -----AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL--APTKYVICVEHDLSV 283
Query: 382 LQPAPETYDLFDDIILLSDGQIVY 405
L L D + ++ VY
Sbjct: 284 LD------YLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 7e-09
Identities = 56/310 (18%), Positives = 93/310 (30%), Gaps = 90/310 (29%)
Query: 149 EDIFNYLGILPSRKKHL--TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
D + PS KK +L G + +++G +GKTTL+ LAG L
Sbjct: 347 NDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-- 404
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTEL 266
D G+ +P+ + Q TVR+ R + L
Sbjct: 405 -----------DEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKI-------RGQFLNP- 445
Query: 267 ARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326
+ + + +K L ++ D V +SG
Sbjct: 446 -QFQTDV-----------------------------VKPLRIDDIIDQEVQH-----LSG 470
Query: 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI------S 380
GE +RV + PA +DE S LDS +++ + ++
Sbjct: 471 GELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL-HNKKTAFIVEHDFI 529
Query: 381 LLQPAPETYDLFDDIILLSDGQIVY---QGPRELVLEFFESMGFKCPKRKGVADFLQE-- 435
+ L D +I+ + P L G FL+
Sbjct: 530 MAT------YLADKVIVFEGIPSKNAHARAPESL--------------LTGCNRFLKNLN 569
Query: 436 VTSRKDQKQY 445
VT R+D +
Sbjct: 570 VTFRRDPNSF 579
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 3e-19
Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 32/227 (14%)
Query: 814 HPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDK---LVLLNGLSGAFRPGVLT 870
+ + F P+ + F ++ VD+ +E ++ K L G R G +
Sbjct: 326 QGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVI 385
Query: 871 ALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 928
++G +G GKTT + +L+G T G + ++T++ K Q I
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----YIK--------AEYE 431
Query: 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988
TVYE L + E+++ + + L V LS + +R
Sbjct: 432 GTVYELLSKIDS-------SKLNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQR 479
Query: 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1034
+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 15/189 (7%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR----KTGGYITGNITISGYPK 907
+L L + G++ ++G +G GKTT + +L+G+ + + I +
Sbjct: 103 VNAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161
Query: 908 K--QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
Q F R+ + + +V + + L +VD + EEV++ +EL
Sbjct: 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELEL 218
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ ++ + LS + +R+ IA L+ F DEP+S LD R V R +R
Sbjct: 219 ENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
Query: 1026 TVDTGRTVV 1034
+ G+ V+
Sbjct: 274 LANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 3e-12
Identities = 61/296 (20%), Positives = 102/296 (34%), Gaps = 84/296 (28%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+ L+ G I+ G + ++GP GKTT + LAG + + G+V ++
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL-- 417
Query: 219 MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
T AY Q+ E TV E LL+++ + +
Sbjct: 418 --------TVAYKPQYIKAEYEGTVYE----------------LLSKIDSSKLNSNFYKT 453
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
++ LK LG+ D V D +SGGE +RV +
Sbjct: 454 ---EL-------------------LKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA-VISLLQPAPETYDLF----- 392
+ A +DE S LD + ++ + N TA V+ +D+
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--------HDVLMIDYV 538
Query: 393 -DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSRKDQKQY 445
D +I+ +G+ G L R+G+ FL +T R+D
Sbjct: 539 SDRLIVF-EGEPGRHGR---ALPPM-------GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 62/326 (19%), Positives = 106/326 (32%), Gaps = 89/326 (27%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+ I+K G + ++GP +GKTT + LAG+L ++ E
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI-------------PNLCEDNDS 151
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP-DPDIDVY 284
DN I E + + E +D+
Sbjct: 152 W--------DNVIRAFRGNELQNY---------------FERLKNGEIRPVVKPQYVDLL 188
Query: 285 MKAIATEGQEANVIT--------DYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
K A +G+ ++ + +K L LE V D + +SGGE +RV
Sbjct: 189 PK--AVKGKVRELLKKVDEVGKFEEVVKELELE-----NVLDRELHQLSGGELQRV---- 237
Query: 337 MMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHI-NSGTAVI------SLLQP 384
+ AL F DE S+ LD ++ ++ + N G AV+ ++L
Sbjct: 238 -AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR---RLANEGKAVLVVEHDLAVLD- 292
Query: 385 APETYDLFDDIILLSDGQIVY------QGPRELVLEFFE----SMGFKCPKRKGVADFLQ 434
L D I ++ VY +G R + EF + + + L
Sbjct: 293 -----YLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLS 347
Query: 435 EVTSRKDQKQY-WTHKEKPYRFVTVE 459
E + + + K Y +E
Sbjct: 348 ERVDVERETLVEYPRLVKDYGSFKLE 373
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 1e-18
Identities = 47/218 (21%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGGYITGNITISGYPKKQETF 912
+L +S G L G++GAGKTTL+++L+ T +G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 913 ------ARISGYCEQNDIH---SPFVTVYESLL--YSAWLRLPPEVDSETRKMFIEEVME 961
I G+ + V + ++ + + ++D E R ++++
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLK 147
Query: 962 LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
LV + Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 148 LVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202
Query: 1022 TVR--NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ + ++ H +I F ++ L+K G
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDG 239
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 62/260 (23%), Positives = 94/260 (36%), Gaps = 55/260 (21%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
TILK +S I G +L G +GKTTLL L SG V G G+
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYS 91
Query: 226 RTAA-----YISQ--HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
++S + V + + S + +G Y+ + + R
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVI-SGAFKSIG-VYQDIDDEIR---------- 139
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
A + LK++G+ A I +S GE++RV M
Sbjct: 140 --------NEAHQ----------LLKLVGMSAKAQQY-----IGYLSTGEKQRV-----M 171
Query: 339 VGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
+ AL L +DE + GLD +++ L A+I + E F
Sbjct: 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFS 231
Query: 394 DIILLSDGQIVYQGPRELVL 413
I+LL DGQ + QG E +L
Sbjct: 232 KILLLKDGQSIQQGAVEDIL 251
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 1e-17
Identities = 51/234 (21%), Positives = 94/234 (40%), Gaps = 36/234 (15%)
Query: 811 QGSHPKKRGMI----LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKL---VLLNGLSGA 863
G + RG + + F P+ + F + V++ +E + K L G
Sbjct: 249 NGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGE 308
Query: 864 FRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQ 921
+ G + ++G +G GKTT + +L+G T G I ++T++ K Q I
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----YIK----- 357
Query: 922 NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981
TVYE L + E+++ + + L V + L
Sbjct: 358 ---ADYEGTVYELLSKIDA-------SKLNSNFYKTELLKPLGIIDLYDREV-----NEL 402
Query: 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1034
S + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-12
Identities = 36/188 (19%), Positives = 77/188 (40%), Gaps = 38/188 (20%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGR----KTGGYITGNITISGYPKK--QETFARISGY 918
+ G++ ++G +G GK+T + +L+G+ G + + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 919 CEQNDIH----SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
+I +V ++ + K + E+++ + ++ +V
Sbjct: 104 ---GEIRPVVKPQYV----------------DLIPKAVKGKVIELLKKADETGKLEEVVK 144
Query: 975 LPG--------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
+ LS + +R+ IA L+ N + F DEP+S LD R R +R
Sbjct: 145 ALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL 204
Query: 1027 VDTGRTVV 1034
+ G++V+
Sbjct: 205 SEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 61/310 (19%), Positives = 107/310 (34%), Gaps = 86/310 (27%)
Query: 145 TTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS 204
E + Y ++ L+ G IK G + ++GP GKTT + LAG +
Sbjct: 281 EIERETLVTYPRLVKDYGSF--RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP 338
Query: 205 SLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
+ G++ ++ T AY Q+ E TV YELL+
Sbjct: 339 T---EGKIEWDL----------TVAYKPQYIKADYEGTV----------------YELLS 369
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324
++ + + ++ LK LG+ D V + +
Sbjct: 370 KIDASKLNSNFYKT-EL---------------------LKPLGIIDLYDREVNE-----L 402
Query: 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA-VISLLQ 383
SGGE +RV ++ A +DE S LD + ++ + N TA V+
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--- 459
Query: 384 PAPETYDLF------DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE-- 435
+D+ D +++ +G+ G + R+G+ FL
Sbjct: 460 -----HDVLMIDYVSDRLMVF-EGEPGKYGRALPPM----------GMREGMNRFLASIG 503
Query: 436 VTSRKDQKQY 445
+T R+D
Sbjct: 504 ITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-07
Identities = 60/331 (18%), Positives = 100/331 (30%), Gaps = 99/331 (29%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL---KVSGRVTYNGHDMGEF 222
+ ++K G + ++GP +GK+T + LAG+L +L S E
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 223 VPERTAAYI--------SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
Q+ + I + G ELL +
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVK-------------GKVIELLKKADETGK--- 138
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
+ +K L LE V + I+ +SGGE +RV
Sbjct: 139 ------------------------LEEVVKALELE-----NVLEREIQHLSGGELQRV-- 167
Query: 335 GEMMVGPALA-----LFMDEISTGLDSSTTFQIVN---CLKQHVHINSGTAVI------S 380
+ AL F DE S+ LD L + G +V+ +
Sbjct: 168 ---AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE-----GKSVLVVEHDLA 219
Query: 381 LLQPAPETYDLFDDIILLSDGQIVY------QGPRELVLEFF------ESMGFKCPKRKG 428
+L L D I ++ VY +G R + EF E++ F+ P
Sbjct: 220 VLD------YLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFR-PYEIK 272
Query: 429 VADFLQEVTSRKDQKQYWTHKEKPYRFVTVE 459
+ V ++ + K Y +E
Sbjct: 273 FTKTGERVEIERETLVTYPRLVKDYGSFRLE 303
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 1e-17
Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 38/247 (15%)
Query: 804 SLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKL--------- 854
S G + +G LP E + DE+ + + ++ L L+ K+
Sbjct: 221 SKSYAARVGINNFLKGY-LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKL 279
Query: 855 --VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQE 910
L +G + G + ++G +G GKTT +L G G +T I Y K Q
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQR 338
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
F + TV + +L + T F EEV + + L L++
Sbjct: 339 IFP------------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLE 380
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
S V + LS + ++L IA L + +D+P+S LD IV + ++
Sbjct: 381 SNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER 435
Query: 1031 RTVVCTI 1037
+ V I
Sbjct: 436 KAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-12
Identities = 35/184 (19%), Positives = 76/184 (41%), Gaps = 21/184 (11%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 924
+ + ++G +G GKTT++ +L+G + N K E R G +I
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRG----KEI 74
Query: 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMF--IEEVMELVELKPLIQSLVGLPGVSG-- 980
++ F +Y + L + V+ ++ + + E++ ++ + + L ++
Sbjct: 75 YNYFKELYSNELKI--VHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW 132
Query: 981 ------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
LS +RL +A L+ + D+P+S LD R + + +R + + V+
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVI 191
Query: 1035 CTIH 1038
H
Sbjct: 192 VVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 8e-10
Identities = 55/298 (18%), Positives = 92/298 (30%), Gaps = 88/298 (29%)
Query: 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219
+K L +G K G + +LGP GKTT L G++ + G VT +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 220 GEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
Y Q I P+
Sbjct: 333 S---------YKPQR----------------------------------------IFPNY 343
Query: 280 DIDVYM---KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
D V A ++ + K L L ++ V D +SGGE +++
Sbjct: 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAA 398
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA-VISLLQPAPETYDLF--- 392
+ A +D+ S+ LD + + +K+ +I +DL
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID--------HDLSIHD 450
Query: 393 ---DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSRKDQKQY 445
D II+ G+ G + + G+ +FL+E VT R+D +
Sbjct: 451 YIADRIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 49/338 (14%), Positives = 101/338 (29%), Gaps = 95/338 (28%)
Query: 168 LKDVS-GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYN-------GHD 218
K K + +LG GKTT+L LAG++ + + +V + G +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 219 MGEFVPE-----RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273
+ + E + Q+ + + G+ E+LT++ R +
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASK------FLK-------GTVNEILTKIDERGKKD 120
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333
+K ++ + + +L SGG +R+
Sbjct: 121 EVKELLNM--------------TNLWNKDANIL------------------SGGGLQRL- 147
Query: 334 TGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI------SLL 382
+V +L D+ S+ LD + +++ + VI +L
Sbjct: 148 ----LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVL 200
Query: 383 QPAPETYDLFDDIILLSDGQIVY----------QGPRELVLEFFESMGFKCPKRKGVADF 432
L D I ++ VY G + + + K + +
Sbjct: 201 D------YLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDE-IKFM 253
Query: 433 LQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHV 470
L+EV+ K T + + +F +
Sbjct: 254 LKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA 291
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 2e-17
Identities = 34/212 (16%), Positives = 72/212 (33%), Gaps = 43/212 (20%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSG-RKTGGYIT-GNITISGYPKKQETFARISGYCEQND 923
G ++G +G+GKTTL+ +SG G I + + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 924 IHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG----- 977
VTV + + E+ + + + +E+++ + L
Sbjct: 82 EAYEIGVTVNDIVYL------YEEL----KGLDRDLFLEMLKA-------LKLGEEILRR 124
Query: 978 -VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1036
+ LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ +
Sbjct: 125 KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILV 181
Query: 1037 IHQPGIDIFDAF---DELFLMKRGGQEIYVGP 1065
H ++ + G +
Sbjct: 182 TH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 44/288 (15%), Positives = 88/288 (30%), Gaps = 83/288 (28%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+ L++++ + G ++LGP SGKTTLL A++G L SG + NG +
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFINGME 66
Query: 219 MGEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
+ + Y + + + +TV + + +G+
Sbjct: 67 VRKIRNYI--RYSTNLPEAYEIGVTVNDIVYLYEELKGLD-------------------- 104
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
+ + E LK L L + + +S G+ V
Sbjct: 105 --------RDLFLE----------MLKALKL----GEEILRRKLYKLSAGQSVLVR---- 138
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD-- 390
ALA + +DE +D++ I +K+ ++ T++
Sbjct: 139 -TSLALASQPEIVGLDEPFENVDAARRHVISRYIKE-YGK---EGILV-------THELD 186
Query: 391 ----LFDDIILLSDGQIVYQG--PREL----VLEFFESMGFKCPKRKG 428
+ G + EL ++E +
Sbjct: 187 MLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMD 234
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.4 bits (205), Expect = 3e-16
Identities = 107/721 (14%), Positives = 196/721 (27%), Gaps = 247/721 (34%)
Query: 121 YEHLNVE-GEA-YLASKALPSFTKFYTTVFE--DIFNYL-GILPSRK-KHLTILKD-VSG 173
+ H++ E GE Y L F + F+ D+ + IL + H+ + KD VSG
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSS---LKVSGRVTYNGHDMGEFVPERTAAY 230
++ LL + + + + L + L + M T Y
Sbjct: 64 TLR--LFWTLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM------MTRMY 112
Query: 231 ISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY-MKAIA 289
I Q D + V F+ V SR + +L R+ ++P ++ + +
Sbjct: 113 IEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDGVLGS- 161
Query: 290 TEGQEANVITDYYLK-VLGLEVCADTMVGDEMIRGI---SGGERKRVTTGEMMVGPALAL 345
G K + L+VC V +M I + T M+ L
Sbjct: 162 --G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL---QPAPETYDLFDDIILLSDGQ 402
++ D S+ ++ I+S A + L +P + ++ + +
Sbjct: 209 IDPNWTSRSDHSSNIKL--------RIHSIQAELRRLLKSKPYENCLLVLLNV---QNAK 257
Query: 403 IVYQGPRELVLEFFESMGFKCP-----KRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVT 457
+ C + K V DFL T+ ++
Sbjct: 258 AW------------NAFNLSCKILLTTRFKQVTDFLSAATTTH---------------IS 290
Query: 458 VEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMK 517
++ + DE+++ K L + RE+L
Sbjct: 291 LDHHSMTLTP--------DEVKSLLLK------YLDCRP----------QDLPREVL--T 324
Query: 518 RNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEIS 577
N +S +A + KH D T I
Sbjct: 325 TNPRR-------LSIIAESIRDGLATWDNWKHVNCDK--------LTTI---------IE 360
Query: 578 MTIAKL-PVFYKQR--DFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAG 634
++ L P Y++ FPP A IP L + +W +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSA--------HIPTILLSL-IWFDVIKSD-------- 403
Query: 635 RFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYW------------ 682
V + + L + S+V +K K +
Sbjct: 404 -----------VMVVVNKLHK------YSLV--------EKQPKESTISIPSIYLELKVK 438
Query: 683 CSPMSYAQNAIVA--NEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYW-LG----- 734
+IV N + P + Y+Y +G
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ---------------YFYSHIGHHLKN 483
Query: 735 -----LGALFGFILLFNLGFTMA---------------ITFLNQLEKPRAVITEESESNK 774
LF + L + F + L QL+ + I + +
Sbjct: 484 IEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 775 Q 775
+
Sbjct: 543 R 543
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 5e-14
Identities = 96/600 (16%), Positives = 185/600 (30%), Gaps = 149/600 (24%)
Query: 67 EAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRV----GIDLPKVEVRYE 122
+AF V N + Q + ++ E+D+ ++ K + L K E +
Sbjct: 27 DAF---VDNFDCKDVQDMPKSILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 123 HLNVEGEA----YLASK-----ALPSF-TKFYTTVFEDIFNYLGILP----SRKKHLTIL 168
E +L S PS T+ Y + ++N + SR + L
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH--DMGEFVPER 226
+ ++P + L+ G SGKT + L + S KV ++ + ++
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVC----LSYKVQCKMDFKIFWLNLKNC--NS 194
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP------- 279
+ + + +++R S +L + E +K P
Sbjct: 195 PETVLEMLQK----LLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 280 -DIDVY----MKA--------IATEGQE-ANVITDYYLKVLGLEVCADTMVGDEMIR--- 322
+V A + T ++ + ++ + L+ + T+ DE+
Sbjct: 250 LL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 323 ---GISGGERKRVTTGEMMVGP-ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV 378
+ R P L++ + I GL + ++ VNC K I S
Sbjct: 309 KYLDCRPQDLPREVLT---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--- 362
Query: 379 ISLLQPAPETYDLFDDIILLSD-------------GQIVYQGPRELVLEFFE-SMGFKCP 424
+++L+PA E +FD + + ++ +V + + S+ K P
Sbjct: 363 LNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 425 KRK--GVADFLQEVTSRKDQK---------QY-------WTHKEKP------YRFV---- 456
K + E+ + + + Y P Y +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 457 -------TVEEFAEAFQSFH-VGQKISDELRTPFDKSKSHRAALTT-EVYGAGKRELLKT 507
+ F F F + QKI + T ++ S S L + Y K +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQQLKFY---KPYICDN 537
Query: 508 CISRELL-------LMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560
E L L K + K T + +AL M + I+ A
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL----------MAED----EAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 7e-13
Identities = 91/603 (15%), Positives = 162/603 (26%), Gaps = 184/603 (30%)
Query: 12 TSLRGN----ISRWRTSSVGAFSKSLREEDDEEALK--WAALEKLPTYNRLRKGLLTTSR 65
LR N +S +T S+ E + + YN R R
Sbjct: 85 EVLRINYKFLMSPIKTEQRQ---PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 66 GEAFEVDVS-NLGLQQ-----RQRLINKLVKVTEV----DNEKFLLKLKSRIDRVGIDLP 115
E+ + N+ + + + + +V D + F L L + L
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLE 200
Query: 116 KVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKH---LTILKDV- 171
++ ++ + + I L L K + L +L +V
Sbjct: 201 MLQKLLYQIDPNWTS------RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 172 -SGIIKP--GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA 228
+ +LL TT VT +F+ T
Sbjct: 255 NAKAWNAFNLSCKILL-------TTR--------FKQ------VT-------DFLSAATT 286
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI 288
+IS + + +T E + + + R + L P + I
Sbjct: 287 THISLDHHSMT-LTPDEVKSLLLKY--LDCRPQDLPREVL-----TTNP-----RRLSII 333
Query: 289 ATEGQEANVITDYYLKVLG------LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
A ++ D + V +E + + E RK
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFD--------R 377
Query: 343 LALFMDE--ISTGL--------DSSTTFQIVNCLKQHVHINSGTAVISLL--QPAPETY- 389
L++F I T L S +VN L ++ SL+ QP T
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQPKESTIS 427
Query: 390 --DLFDDIILLSDG------QIV--YQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSR 439
++ ++ + + IV Y P+ F+S P D
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKT-----FDSDDLIPPY----LD-------- 470
Query: 440 KDQKQYWT-----HKEKPYRFVTVEEFAEAFQSFH-VGQKISDELRTPFDKSKSHRAALT 493
QY+ H + + F F F + QKI + T ++ S S L
Sbjct: 471 ----QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQ 525
Query: 494 T------------EVYGAGKRELLK--------------TCISRELLLMKRNSFVYIFKL 527
Y +L T + R + LM + ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEAIFEEAH 584
Query: 528 TQI 530
Q+
Sbjct: 585 KQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 5e-09
Identities = 66/497 (13%), Positives = 136/497 (27%), Gaps = 181/497 (36%)
Query: 742 ILLFNLGFTMAITFLNQLEKPRAVITEESESN--KQDNRIRGTVQL----SARGESG--- 792
+ +F F + + P++++++E + + + GT++L ++ E
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 793 --EDISGRNSSSKSLILTEAQGSHPKKRGMILPF--EPHSLTFDEVV----YSVDMPQEM 844
E++ N L + ++ M+ E +++ Y+V Q
Sbjct: 82 FVEEVLRINYK----FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 845 -KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTL-MDVLSGRKTGGYITGNITI 902
KL+ L +L RP + GV G+GKT + +DV K
Sbjct: 138 LKLRQALL-EL----------RPAKNVLIDGVLGSGKTWVALDVCLSYKV---------- 176
Query: 903 SGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 962
Q F ++ WL L +S E V+E
Sbjct: 177 ------QCKM--------------DF-KIF-------WLNL-KNCNSP------ETVLE- 200
Query: 963 VELKPLIQSL---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAAAI 1018
++Q L + S +L I + A + +P + L +
Sbjct: 201 -----MLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCL------L 248
Query: 1019 VMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLI---- 1074
V+ V+N ++AF+ SC+++
Sbjct: 249 VLLNVQNA----------------KAWNAFN-------------------LSCKILLTTR 273
Query: 1075 --SYFEAIPG-------VEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRN 1125
+ + ++ P + + L D
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLK----YLDCRPQD----------- 317
Query: 1126 KALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACL--WKQHWSYWRNPQYTAVRFFFTAF 1183
L E+ P + + W W++ + +
Sbjct: 318 --LPREVLTTNP----R---------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 1184 IAVL----LGSLFWDMG 1196
+ VL +F +
Sbjct: 363 LNVLEPAEYRKMFDRLS 379
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 57/288 (19%), Positives = 105/288 (36%), Gaps = 74/288 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK ++ IK G +T +LG GK+TL G L S SGR+ ++ + +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 228 AAYISQH--------DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ + DN + +V + ++F A + E+ +R + A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA------ 127
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
LK G+E D +S G++KRV
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRV------- 152
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD 390
A+A L +DE + GLD +I+ L + + G +I
Sbjct: 153 --AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPL 209
Query: 391 LFDDIILLSDGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFLQE 435
D++ ++ +G+++ QG + V E + + P+ + + L+E
Sbjct: 210 YCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 38/218 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP--KKQETF 912
L G++ + G +TA++G +G GK+TL +G + + +G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 913 ARIS---GYCEQNDIHSP---FV--TVYESLLYSAW-LRLPPEVDSETRKMFIEEVMELV 963
++ G Q+ P +VY+ + + A ++LP + E RK ++ ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPED---EIRKR-VDNALKRT 131
Query: 964 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
++ L LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 132 GIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 1024 RN-TVDTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1057
+ G T++ H DI D +F+MK G
Sbjct: 187 VEMQKELGITIIIATH----DIDIVPLYCDNVFVMKEG 220
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 6e-15
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 31/212 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L +S G + G +G+GK+TL+ +++G T +G++ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 915 ISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPE---VDSETRKMFIEEVMELVELKPLIQ 970
G Q F V++ + ++ + D + + +++ ME V L
Sbjct: 79 NIGIAFQYPEDQFFAERVFDEVAFA------VKNFYPDRDPVPL-VKKAMEFVGLDFD-- 129
Query: 971 SLVGLPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 130 ---SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186
Query: 1029 TGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1057
G+TV+ H DI D + ++++G
Sbjct: 187 LGKTVILISH----DIETVINHVDRVVVLEKG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 54/281 (19%), Positives = 100/281 (35%), Gaps = 77/281 (27%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
++ + P KK L++VS +I G L+ G SGK+TLL +AG ++ +
Sbjct: 5 VVNVSHIFHRGTPLEKK---ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT- 60
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTE 265
SG V Y+G + R Q+ ++ V + +AF+ + +
Sbjct: 61 --SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RD 112
Query: 266 LARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG-- 323
+A ++ +GL+ + +
Sbjct: 113 PVPLVKKA-----------------------------MEFVGLDF--------DSFKDRV 135
Query: 324 ---ISGGERKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLKQHVH 371
+SGGE++RV A+A L +DE GLD ++ +++
Sbjct: 136 PFFLSGGEKRRV---------AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK 185
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 411
G VI + + D +++L G+ V+ G E
Sbjct: 186 -TLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 72.1 bits (178), Expect = 3e-14
Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 39/204 (19%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG-YITGNITISGYPKKQETFA 913
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 914 R---ISGYCEQ--NDIHSPFVTVYES----LLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
R + G+ Q I P +T E+ +L + K E ++ +
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSELG 129
Query: 965 L------KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
L KP LS +++R+ IA L P ++F DEPT LD+
Sbjct: 130 LGDKLSRKP-----------YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178
Query: 1019 VMRTVRNTVDTGRTVVCTIHQPGI 1042
VM + G ++V H+ +
Sbjct: 179 VMDIFLKINEGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 5e-05
Identities = 62/249 (24%), Positives = 98/249 (39%), Gaps = 56/249 (22%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
ILK +S +K G ++G SGK+TLL L G LD+ G+V G ++
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP--TEGKVFLEGKEVDYTNE 73
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN-E-----AGIKPD 278
+ + ++ +G F V + L+ EL EN G
Sbjct: 74 KELSLLRNR---KLG---------F------VFQFHYLIPELTALENVIVPMLKMGKPKK 115
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
K L LGL E+ SGGE++RV +
Sbjct: 116 -----EAKERGEY----------LLSELGLGDKLSRKPY-EL----SGGEQQRVAIARAL 155
Query: 339 V-GPALALFMDEISTG-LDSSTTFQIVNCLKQHVHINS-GTAVISLLQPAPETYDLFDDI 395
P L LF DE TG LDS+ T ++++ + IN GT+++ ++ E +L
Sbjct: 156 ANEPIL-LFADE-PTGNLDSANTKRVMDIFLK---INEGGTSIV-MVTHERELAELTHRT 209
Query: 396 ILLSDGQIV 404
+ + DG++V
Sbjct: 210 LEMKDGKVV 218
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 26/206 (12%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGG-YITGNITISGYP 906
E+ + L ++ + G ++MG SG+GK+T+++++ G + T G NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTNDLD 73
Query: 907 KKQETFAR---ISGYCEQ--NDIHSPFVTVYES----LLYSAWLRLPPEVDSETRKMFIE 957
+ T R I G+ Q N I P +T E+ L++ + E R+
Sbjct: 74 DDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGE----ERRKRAL 126
Query: 958 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
E +++ EL+ + P + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 127 ECLKMAELEERFANH--KP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182
Query: 1018 IVMRTVRN-TVDTGRTVVCTIHQPGI 1042
+M+ ++ + G+TVV H +
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 56/250 (22%), Positives = 96/250 (38%), Gaps = 53/250 (21%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+ LK+V+ IK G ++GP SGK+T +L + G LD G V + +
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDKP--TEGEVYIDNIKTNDLDD 74
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV- 283
+ + IG F V ++ L+ L EN V
Sbjct: 75 DELTKI---RRDKIG---------F------VFQQFNLIPLLTALEN-----------VE 105
Query: 284 ----YMKAIATEGQEANVITDYYLKVLGLEVCADTMVG---DEMIRGISGGERKRVTTGE 336
+ A G+E LK+ LE + +++ SGG+++RV
Sbjct: 106 LPLIFKYRGAMSGEERRKRALECLKMAELE---ERFANHKPNQL----SGGQQQRVAIAR 158
Query: 337 MMV-GPALALFMDEISTG-LDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
+ P + + D+ T LDS T +I+ LK+ ++ G V+ ++ +
Sbjct: 159 ALANNPPI-ILADQ-PTWALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARFGER 214
Query: 395 IILLSDGQIV 404
II L DG++
Sbjct: 215 IIYLKDGEVE 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 39/204 (19%)
Query: 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ- 909
L+G+S + G +T ++G +G+GK+TL++V++G + G + N I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 910 ------ETFARISGYCEQNDIHSPF--VTVYE-----------SLLYSAWLRLPPEVDSE 950
TF Q P +TV E S L S + + + E
Sbjct: 80 YHYGIVRTF--------QT-PQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 129
Query: 951 TRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010
+ +++E ++L L G LS Q K + I L+ NP +I MDEP +G
Sbjct: 130 MVEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
Query: 1011 LDARAAAIVMRTVRNTVDTGRTVV 1034
+ A + V G T +
Sbjct: 184 VAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 52/198 (26%), Positives = 74/198 (37%), Gaps = 41/198 (20%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
L VS + G +TL++GP SGK+TL+ + G L + GRV + D+ P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 225 ERTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
Y I Q + EMTV E L C G L + + E
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------- 129
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE---- 336
M A + L+ L L D G+ +SGG+ K V E
Sbjct: 130 ----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRA 167
Query: 337 MMVGPALALFMDEISTGL 354
+M P + + MDE G+
Sbjct: 168 LMTNPKM-IVMDEPIAGV 184
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 2e-11
Identities = 49/219 (22%), Positives = 82/219 (37%), Gaps = 66/219 (30%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITIS 903
D V+L+ ++ + + G + ++G SG+GK+TL +G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 904 GYPKK---------------QET--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE 946
G+ Q+ R ++ +++ + P
Sbjct: 70 GHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLAN-----PG 109
Query: 947 VDSETRKMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANP 999
+ E + +L I L VG G LS QR+R+ IA LV NP
Sbjct: 110 MSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNP 164
Query: 1000 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
I+ DE TS LD + ++MR + GRTV+ H
Sbjct: 165 KILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 58/285 (20%), Positives = 108/285 (37%), Gaps = 94/285 (32%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F +I F Y + IL +++ IK G + ++G SGK+TL +
Sbjct: 10 FRNIRFRY------KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE- 62
Query: 207 KVSGRVTYNGHDMGEFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
+G+V +GHD+ P R +G + +++ + + S
Sbjct: 63 --NGQVLIDGHDLALADPNWLR---------RQVG-VVLQDNVLLN------RS------ 98
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQEANV---ITD----YYLKVLGLEVCADTMVG 317
+N + P ++ + A + A I++ Y +T+VG
Sbjct: 99 ---IIDNISLANPGMSVEKVIYAA----KLAGAHDFISELREGY-----------NTIVG 140
Query: 318 DEMIRGI--SGGERKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCL 366
+ +G SGG+R+R+ A+A L DE ++ LD + I+ +
Sbjct: 141 E---QGAGLSGGQRQRI---------AIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 367 KQHVHINSGTAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ + +I S ++ A D II++ G+IV QG
Sbjct: 189 HK-ICKGRTVIIIAHRLSTVKNA-------DRIIVMEKGKIVEQG 225
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 3e-11
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 45/199 (22%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 909
L +S +P + A G SG GK+T+ +G ITI G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 910 ETFA----RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 962
+ +I G+ Q+ + T+ E+L Y L + E + +V++L
Sbjct: 69 ISLENWRSQI-GFVSQD----SAIMAGTIRENLTYG----LEGDYTDED----LWQVLDL 115
Query: 963 VELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015
+ ++++ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ +
Sbjct: 116 AFARSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
Query: 1016 AAIVMRTVRNTVDTGRTVV 1034
++V + + +++ GRT +
Sbjct: 175 ESMVQKAL-DSLMKGRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 59/276 (21%), Positives = 99/276 (35%), Gaps = 76/276 (27%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
+ F Y ++ IL+D+S +P + GP GK+T+ SL
Sbjct: 4 ARHVDFAY----DDSEQ---ILRDISFEAQPNSIIAFAGPSGGGKSTI---------FSL 47
Query: 207 ------KVSGRVTYNGHDMGEFVPE--RTA-AYISQHDNHIGEMTVRETLAFSARCQGVG 257
+G +T +G + E R+ ++SQ D+ I T+RE L +
Sbjct: 48 LERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQ-DSAIMAGTIRENLTY-------- 98
Query: 258 SRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317
G++ D + + + A + V + +T VG
Sbjct: 99 ----------------GLEGDYTDEDLWQVL----DLAF-ARSF---VENMPDQLNTEVG 134
Query: 318 DEMIRGI--SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG 375
+ RG+ SGG+R+R+ + L +DE + LDS + + L +
Sbjct: 135 E---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL-DSLMKGRT 190
Query: 376 TAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
T VI S + A D I + GQI G
Sbjct: 191 TLVIAHRLSTIVDA-------DKIYFIEKGQITGSG 219
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 53/207 (25%), Positives = 81/207 (39%), Gaps = 54/207 (26%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 909
L +S PG AL+G SGAGK+T++ D+ SG I I G Q
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDISQ 120
Query: 910 ETFA---RISGYCEQ-----NDIHSPFVTVYESLLY---SAWLRLPPEVDSETRKMFIEE 958
T A G Q ND T+ +++ Y +A + E +E
Sbjct: 121 VTQASLRSHIGVVPQDTVLFND------TIADNIRYGRVTAG-------NDE-----VEA 162
Query: 959 VMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+ + I + VG G+ LS +++R+ IA ++ P II +DE TS L
Sbjct: 163 AAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSAL 221
Query: 1012 DARAAAIVMRTVRNTVDTGRTVVCTIH 1038
D + ++ V RT + H
Sbjct: 222 DTSNERAIQASL-AKVCANRTTIVVAH 247
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 6e-11
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 40/201 (19%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 909
L GLS + G AL+G SG GK+T++ D ++G + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 910 ETFARISGYCEQNDIHS--PFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
+ Q I S P + ++ E++ Y R+ + I +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE-------IVRAAKEAN 1149
Query: 965 LKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
+ I SL VG G LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 1018 IVMRTVRNTVDTGRTVVCTIH 1038
+V + + GRT + H
Sbjct: 1209 VVQEAL-DKAREGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 6e-11
Identities = 55/213 (25%), Positives = 78/213 (36%), Gaps = 66/213 (30%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKK- 908
L GL+ + G AL+G SG GK+T + D L G ++I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM---------VSIDGQDIRT 456
Query: 909 --------------QET--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETR 952
QE FA T+ E++ Y E
Sbjct: 457 INVRYLREIIGVVSQEPVLFAT---------------TIAENIRYG----REDVTMDE-- 495
Query: 953 KMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005
IE+ ++ I L VG G LS Q++R+ IA LV NP I+ +D
Sbjct: 496 ---IEKAVKEANAYDFIMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLD 551
Query: 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
E TS LD + A+V + GRT + H
Sbjct: 552 EATSALDTESEAVVQAALDK-AREGRTTIVIAH 583
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
F++I F+Y PSRK + ILK ++ +K G+ L+G GK+T + + D
Sbjct: 389 EFKNIHFSY----PSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 206 LKVSGRVTYNGHD 218
G V+ +G D
Sbjct: 444 ---DGMVSIDGQD 453
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 37/198 (18%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-ITGNITISGYPKKQETFA-- 913
L ++ G AL+G +G+GK+T+ +L R Y G+I I G +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNKYNRNSI 91
Query: 914 -RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
I G Q N+ T+ ++LY + E + + + +L
Sbjct: 92 RSIIGIVPQDTILFNE------TIKYNILYGK-----LDATDEE----VIKATKSAQLYD 136
Query: 968 LIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
I++L VG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ +
Sbjct: 137 FIEALPKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 1021 RTVRNTVDTGRTVVCTIH 1038
+ V + + RT++ H
Sbjct: 196 KAVED-LRKNRTLIIIAH 212
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 60/272 (22%), Positives = 110/272 (40%), Gaps = 68/272 (25%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F D+ F+Y ++ + LK ++ I G L+G SGK+T+ L D
Sbjct: 20 FSDVNFSY-----PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--- 71
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYISQHD--NHIGEMTVRETLAFSARCQGVGSRYELLT 264
G + G ++ + +++ + IG + ++T+ F+
Sbjct: 72 -AEGDIKIGGKNVNK---------YNRNSIRSIIG-IVPQDTILFNETI----------- 109
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQ--EANVITDYYLKVLGLEVCADTMVGDEMIR 322
+ N K D AT+ + +A Y + L DT+VG+ +
Sbjct: 110 ----KYNILYGKLD----------ATDEEVIKATKSAQLYDFIEALPKKWDTIVGN---K 152
Query: 323 GI--SGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
G+ SGGER+R+ ++ P + + DE ++ LDS T + ++ + N +I
Sbjct: 153 GMKLSGGERQRIAIARCLLKDPKI-VIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIII 210
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
S + A + IILL+ G+IV +G
Sbjct: 211 AHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 48/214 (22%), Positives = 71/214 (33%), Gaps = 65/214 (30%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKK- 908
L GL+ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 909 --------------QET--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETR 952
QE F R + E++ Y L E
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYG----LTRTPTMEE- 125
Query: 953 KMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005
I V I VG G LS QR+ + +A L+ P ++ +D
Sbjct: 126 ---ITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILD 181
Query: 1006 EPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1038
TS LDA V R + + RTV+
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 59/298 (19%), Positives = 103/298 (34%), Gaps = 116/298 (38%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F+D+ F Y P+ +L+ ++ + PG++T L+GP SGK+T+ +L
Sbjct: 19 FQDVSFAY----PNHPNV-QVLQGLTFTLYPGKVTALVGPNGSGKSTVA---------AL 64
Query: 207 ------KVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGE-----MTVRETLAFSAR 252
G+V +G + ++ A + Q E + RE +A+
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ------EPLLFGRSFRENIAY--- 115
Query: 253 CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV---ITD----YYLKV 305
G+ P ++ E+ I+ Y
Sbjct: 116 ---------------------GLTRTPTMEEITAV----AMESGAHDFISGFPQGY---- 146
Query: 306 LGLEVCADTMVGDEMIRGI--SGGERKRVTTGEMMVGPALA---------LFMDEISTGL 354
DT VG+ G SGG+R+ V ALA L +D ++ L
Sbjct: 147 -------DTEVGE---TGNQLSGGQRQAV---------ALARALIRKPRLLILDNATSAL 187
Query: 355 DSSTTFQIVNCLKQHVHINSGTAVI-----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
D+ ++ L + S T ++ SL + A I+ L +G + QG
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA-------HHILFLKEGSVCEQG 238
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 3e-09
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 28/163 (17%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
LLN + + G +G GK+TLM ++ + G+ P ++E R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGF----------PTQEE--CRT 497
Query: 916 SGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
Y E + D +V + + E T++ I++ + + ++
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
+S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 9e-09
Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 61/193 (31%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITIS 903
+++ +L ++ + G A +G+SG GK+TL+ DV SG+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 904 GYPKK---------------QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVD 948
G+ K Q+ S TV E++L P
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLGR-----PTAT 443
Query: 949 SETRKMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSI 1001
E + E ++ I +L VG GV LS Q++RL+IA + NP I
Sbjct: 444 DEE----VVEAAKMANAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPI 498
Query: 1002 IFMDEPTSGLDAR 1014
+ +DE TS LD
Sbjct: 499 LILDEATSALDLE 511
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-08
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 47/186 (25%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITIS 903
++K L + +S + G AL+G SG+GK+T+ DV SG I +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLD 403
Query: 904 GYPKKQETFA---RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF 955
G+ + R Q ND T+ ++ Y+A E E
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAA----EGEYTREQ---- 449
Query: 956 IEE------VMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008
IE+ ME +E P + +++G G S LS QR+R+ IA L+ + ++ +DE T
Sbjct: 450 IEQAARQAHAMEFIENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEAT 508
Query: 1009 SGLDAR 1014
S LD
Sbjct: 509 SALDTE 514
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 68/285 (23%), Positives = 111/285 (38%), Gaps = 93/285 (32%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-E 225
ILK V+ ++ G + L+GP +GK+TL LAG + ++ G + +G ++ E P E
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGENILELSPDE 76
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGSRYELLTEL-ARRENEAGIKPD 278
R + LAF Q GV L L A+ E
Sbjct: 77 RARKGL--------------FLAF----QYPVEVPGVTIANFLRLALQAKLGRE------ 112
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR-----GISGGERKRVT 333
+ + + L++L + + + G SGGE+KR
Sbjct: 113 VGVAEFWTKVKKA-----------LELLDWD--------ESYLSRYLNEGFSGGEKKRNE 153
Query: 334 TGEM-MVGPALALFMDEISTGLDSSTTFQI---------VNCLKQHVHINSGTAVIS--- 380
++ ++ P A+ +DE +GLD I VN ++ N G VI+
Sbjct: 154 ILQLLVLEPTYAV-LDETDSGLD------IDALKVVARGVNAMRGP---NFGALVITHYQ 203
Query: 381 -LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGF 421
+L QP D + ++ DG++V G EL LE E+ G+
Sbjct: 204 RILNYIQP--------DKVHVMMDGRVVATGGPELALE-LEAKGY 239
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 46/201 (22%)
Query: 846 LQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-IT-GNITIS 903
L ++ + +L G++ G + ALMG +GAGK+TL +L+G Y + G I +
Sbjct: 9 LWASIDGETIL-KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLD 65
Query: 904 G---------------------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLR 942
G YP E + G VT+ L + +
Sbjct: 66 GENILELSPDERARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAK 108
Query: 943 LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1002
L EV +++ +EL++ S + G S ++KR I LV P+
Sbjct: 109 LGREVGVAEFWTKVKKALELLDWDE---SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYA 165
Query: 1003 FMDEPTSGLDARAAAIVMRTV 1023
+DE SGLD A +V R V
Sbjct: 166 VLDETDSGLDIDALKVVARGV 186
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 60/267 (22%), Positives = 99/267 (37%), Gaps = 78/267 (29%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+K + + G++ L+G +GKTT L A+AG + + G++ +NG D+
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77
Query: 227 TA----AYISQHDNHIGEMTVRETL---AFSARCQGVGSR-----YEL---LTELARREN 271
A + + E+TV E L A++ + + R + L L E R +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE--RLKQ 135
Query: 272 EAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKR 331
G T+ SGGE++
Sbjct: 136 LGG---------------------------------------TL---------SGGEQQM 147
Query: 332 VTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVISLL--QPAPE 387
+ G +M P L L MDE S GL ++ +++ IN GT + LL Q A
Sbjct: 148 LAIGRALMSRPKL-LMMDEPSLGLAPILVSEVFEVIQK---INQEGTTI--LLVEQNALG 201
Query: 388 TYDLFDDIILLSDGQIVYQGPRELVLE 414
+ +L GQIV +G +L+
Sbjct: 202 ALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 28/193 (14%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 908
+ + G+ G + L+G +GAGKTT + ++G R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 909 QETFARISGYCEQNDIHSP-----F--VTVYESLLYSAWLRLPPEVDSETRKMFIEEVME 961
I+ P F +TVYE+L+ A+ R D E K +E +
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFS 124
Query: 962 LV-ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
L LK ++ L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1021 RTVRNTVDTGRTV 1033
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-08
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 46/180 (25%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 909
L ++ G AL+G SG+GK+T+ D+ G I + G+ ++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMDGHDLRE 409
Query: 910 ETFA---RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE--- 958
T A Q ND TV ++ Y+ E S + IEE
Sbjct: 410 YTLASLRNQVALVSQNVHLFND------TVANNIAYAR-----TEEYSREQ---IEEAAR 455
Query: 959 ---VMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
M+ + + +++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 456 MAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 62/280 (22%), Positives = 104/280 (37%), Gaps = 92/280 (32%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-E 225
IL+ +S + PG + ++GP SGK+TL LAG+ D + G V + G D+ P +
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPED 93
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGSRYELLTELARRENEAGIKPDP 279
R I +AF Q GV +++ L T L + G +
Sbjct: 94 RAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETLD 135
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR-----GISGGERKRVTT 334
D + +L + ++++ G SGGE+KR
Sbjct: 136 RFDFQDLMEEK------------IALLKMP--------EDLLTRSVNVGFSGGEKKR--- 172
Query: 335 GE----MMVGPALALFMDEISTGLDSSTTFQI---------VNCLKQHVHINSGTAVIS- 380
+ ++ P L + +DE +GLD I VN L+ +++
Sbjct: 173 NDILQMAVLEPELCI-LDESDSGLD------IDALKVVADGVNSLRDG---KRSFIIVTH 222
Query: 381 ---LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+L +P D + +L G+IV G LV +
Sbjct: 223 YQRILDYIKP--------DYVHVLYQGRIVKSGDFTLVKQ 254
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 42/209 (20%), Positives = 78/209 (37%), Gaps = 47/209 (22%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE 910
+L +S + PG L+G +G+GK+TL+ G I I G
Sbjct: 32 GGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----- 82
Query: 911 TFARISGYCEQNDIHSPFVTVY-----------ESLLYSAWLRL---PPEVDSETRKMFI 956
S +T+ + ++S R P S+ I
Sbjct: 83 ------------SWDS--ITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE---I 125
Query: 957 EEVMELVELKPLIQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010
+V + V L+ +I+ G + G LS ++ + +A +++ I+ +DEP++
Sbjct: 126 WKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 185
Query: 1011 LDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1039
LD I+ RT++ TV+ +
Sbjct: 186 LDPVTYQIIRRTLKQAF-ADCTVILCEAR 213
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 5e-08
Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 871 ALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSP 927
L+G +GAGK+ +++++G + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987
++VY ++ Y LR V+ + R + E+ E + + L+ + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 988 RLTIAVELVANPSIIFMDEPTSGLDAR 1014
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 43/183 (23%), Positives = 60/183 (32%), Gaps = 75/183 (40%)
Query: 183 LLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQ------HD 235
LLGP +GK+ L +AG + G V NG D+ PE R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEA 295
++V +A+ R V E RR E
Sbjct: 85 -----LSVYRNIAYGLR--NVERV-----ERDRRVREM---------------------- 110
Query: 296 NVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA---------LF 346
+ LG+ + D +SGGER+RV ALA L
Sbjct: 111 -------AEKLGIA-----HLLDRKPARLSGGERQRV---------ALARALVIQPRLLL 149
Query: 347 MDE 349
+DE
Sbjct: 150 LDE 152
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
LN +S G + ++G SGAGK+TL+ ++ R T G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 914 RIS-GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R G Q N + S TV+ ++ P E+D+ + V EL+
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVAL------PLELDNTPKDEVKRRVTELLS------ 149
Query: 971 SLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
LVGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 150 -LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 59/304 (19%), Positives = 102/304 (33%), Gaps = 93/304 (30%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV--SGRVTYNG 216
+ + L +VS + G++ ++G +GK+TL+ + L+ G V +G
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-----LERPTEGSVLVDG 89
Query: 217 HDMGEFVPERTAAY------ISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE 270
++ I QH N + TV +A E+ RR
Sbjct: 90 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-----EVKRRV 144
Query: 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERK 330
E L ++GL D+ + +SGG+++
Sbjct: 145 TE-----------------------------LLSLVGLGDKHDSYPSN-----LSGGQKQ 170
Query: 331 RVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGT--------- 376
RV + ALA L D+ ++ LD +TT I+ LK IN
Sbjct: 171 RVA-----IARALASNPKVLLCDQATSALDPATTRSILELLKD---INRRLGLTILLITH 222
Query: 377 --AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434
V+ + D + ++S+G+++ Q V E F PK F+Q
Sbjct: 223 EMDVVK---------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQ 265
Query: 435 EVTS 438
Sbjct: 266 STLH 269
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 47/197 (23%), Positives = 70/197 (35%), Gaps = 67/197 (34%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
++ VS I+ G M LLGP SGKTT+L +AG + G V G + + P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85
Query: 225 ERTAAYISQHD---NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
+R + Q+ H MTV + ++F R + V E+ R E
Sbjct: 86 KRNVGLVFQNYALFQH---MTVYDNVSFGLREKRVPK-----DEMDARVREL-------- 129
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
L+ + LE + +SGG+++RV
Sbjct: 130 ---------------------LRFMRLE-----SYANRFPHELSGGQQQRV--------- 154
Query: 342 ALA---------LFMDE 349
ALA L DE
Sbjct: 155 ALARALAPRPQVLLFDE 171
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 25/166 (15%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
+ G+S R G + L+G SG+GKTT++ +++G R T G + G ++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R G QN +TVY+++ + + P+ + + R V EL+ +
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR------VRELLRF-------M 133
Query: 974 GLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
L + LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 134 RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 7e-07
Identities = 62/308 (20%), Positives = 103/308 (33%), Gaps = 120/308 (38%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L ++ I G + ++G GK++LL AL ++D KV G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ AY+ Q I ++RE + F G + E
Sbjct: 67 SVAYVPQQ-AWIQNDSLRENILF-------GCQLE------------------------- 93
Query: 287 AIATEGQEANVITDYYLKVLGLEVCA------------DTMVGDEMIRGI--SGGERKRV 332
YY V ++ CA T +G+ +G+ SGG+++RV
Sbjct: 94 ------------EPYYRSV--IQACALLPDLEILPSGDRTEIGE---KGVNLSGGQKQRV 136
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAV--- 378
+LA LF D +S +D+ I N + + + T +
Sbjct: 137 ---------SLARAVYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 379 --ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
+S L D II++S G+I G + +L + A+FL+
Sbjct: 187 HSMSYLPQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTY 229
Query: 437 TSRKDQKQ 444
S
Sbjct: 230 ASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 6e-06
Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
LNG++ + G L A++G G GK++L+ L K G++ I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 915 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
++ Y Q ++ ++ E++L+ + + + V++ L P ++
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 972 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV- 1023
L +G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 113 LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
Query: 1024 -RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ +T + H + D + +M G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-06
Identities = 55/299 (18%), Positives = 99/299 (33%), Gaps = 108/299 (36%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM---GEF 222
+L D+S + PG + ++G GKTTLL LAG SG ++ +G +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74
Query: 223 VP--ERTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
+P ER Y+ Q H +TV +A+ + + +R
Sbjct: 75 LPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKGRTA-----QERQRIEAM- 122
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
L++ G+ A +SGG+++R
Sbjct: 123 ----------------------------LELTGISELA-----GRYPHELSGGQQQRA-- 147
Query: 335 GEMMVGPALA---------LFMDEISTGLD----SSTTFQIVNCLKQHVHINSGTAVISL 381
ALA + +DE + LD ++ L+ +G + + +
Sbjct: 148 -------ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA-----NGKSAVFV 195
Query: 382 LQPAPETYD------LFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
++D D I ++ G+I+ P EL ++ P A F+
Sbjct: 196 ------SHDREEALQYADRIAVMKQGRILQTASPHEL---------YRQPADLDAALFI 239
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 25/168 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
LN +S + PG + ++G SG GKTTL+ L+G + G I+ TI
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 914 RISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
R GY Q P +TVY ++ Y R + ++EL
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQR------IEAMLEL------ 125
Query: 972 LVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
G+ ++G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 126 -TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 53/288 (18%), Positives = 98/288 (34%), Gaps = 118/288 (40%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+LKD++ I+ G++ + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
++ SQ + I T++E + F G Y+
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYD------------------------- 96
Query: 287 AIATEGQEANVITDYYLKVLGLEVCA------------DTMVGDEMIRGI--SGGERKRV 332
Y V ++ C + ++G+ GI SGG+R R+
Sbjct: 97 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 139
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAVI-- 379
+LA L LD T +I +C+ + + I
Sbjct: 140 ---------SLARAVYKDADLYLLDSPFGY-LDVLTEKEIFESCVCKLMA---NKTRILV 186
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQGP-RELV---LEFFESM 419
L+ A D I++L +G + G EL +F +
Sbjct: 187 TSKMEHLKKA-------DKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 41/213 (19%), Positives = 85/213 (39%), Gaps = 43/213 (20%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 915 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
IS +C Q ++ T+ E++++ + V++ +L+ I
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 972 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 116 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
Query: 1025 NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ +T + + ++ D++ ++ G
Sbjct: 175 CKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 42/213 (19%), Positives = 87/213 (40%), Gaps = 44/213 (20%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 915 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
IS +C Q + ++ T+ E+++ ++ D V++ +L+ I
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-------DEY----RYRSVIKACQLEEDISK 144
Query: 972 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 1025 NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ +T + + ++ D++ ++ G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 49/273 (17%), Positives = 95/273 (34%), Gaps = 115/273 (42%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+LKD++ I+ G++ + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
++ SQ ++ I T++E + +G Y+
Sbjct: 100 RISFCSQ-NSWIMPGTIKENI--------IGVSYD------------------------- 125
Query: 287 AIATEGQEANVITDYYLKVLGLEVCA------------DTMVGDEMIRGI--SGGERKRV 332
Y V ++ C + ++G+ GI SGG+R R+
Sbjct: 126 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 168
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAVI-- 379
+LA L LD T +I +C+ + + + I
Sbjct: 169 ---------SLARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLM---ANKTRILV 215
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQGP 408
L+ A D I++L +G + G
Sbjct: 216 TSKMEHLKKA-------DKILILHEGSSYFYGT 241
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 981 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1035 CTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063
H ++ DA D + + V
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGSSKV 335
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 28/174 (16%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI-------TGNITIS 903
K+V L+ ++ G ++G SGAGKTT M +++G + G + N +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 904 GYPKKQET---FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
P+ ++ F Q P +T +E++ + + + R +EEV
Sbjct: 77 VPPEDRKIGMVF--------QTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVA 125
Query: 961 ELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
+++++ + L P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 126 KILDIHHV---LNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 7e-05
Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 60/196 (30%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM----GE 221
L +V+ I+ G +LGP +GKTT + +AG S +G + ++ +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKL 75
Query: 222 FVP--ERTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273
VP +R + Q + +T E +AF + E+ +R E
Sbjct: 76 IVPPEDRKIGMVFQTWALYPN------LTAFENIAFPLTNMKMSK-----EEIRKRVEEV 124
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333
K+L + V + R +SG +++RV
Sbjct: 125 -----------------------------AKILDIH-----HVLNHFPRELSGAQQQRVA 150
Query: 334 TGEMMVGPALALFMDE 349
+V L +DE
Sbjct: 151 LARALVKDPSLLLLDE 166
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 43/200 (21%), Positives = 71/200 (35%), Gaps = 76/200 (38%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
L ++S ++ G ++LGP +GKT L +AG SGR+ +G D+ + PE
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
A++ Q H M V++ L F R + + + +R +
Sbjct: 71 KHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKI--------KDPKRVLDT----- 111
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
+ L +E + D +SGGE++RV
Sbjct: 112 ------------------------ARDLKIE-----HLLDRNPLTLSGGEQQRV------ 136
Query: 339 VGPALA---------LFMDE 349
ALA L +DE
Sbjct: 137 ---ALARALVTNPKILLLDE 153
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L+ LS G ++G +GAGKT +++++G G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE-VMELVELKPLIQSL 972
+ QN P + V ++L + +R+ +K+ + V++
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPKRVLDTARD------- 114
Query: 973 VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
+ + + LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 5e-05
Identities = 50/212 (23%), Positives = 80/212 (37%), Gaps = 65/212 (30%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITIS 903
+ K +L ++ +PG AL+G +G+GKTT++ DV G+ I +
Sbjct: 366 KKKP-VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ---------ILVD 415
Query: 904 GYPKKQETFARISGYCEQNDIHSPF--V---------TVYESLLYSAWLRLPPEVDSETR 952
G ++ ++ + S V TV E+L Y P E
Sbjct: 416 GIDIRKIK---------RSSLRSSIGIVLQDTILFSTTVKENLKYGN-----PGATDEE- 460
Query: 953 KMFIEEVMELVELKPLIQSLVGLPG---------VSGLSTEQRKRLTIAVELVANPSIIF 1003
I+E +L I+ L P LS QR+ L I +ANP I+
Sbjct: 461 ---IKEAAKLTHSDHFIKHL---PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILI 514
Query: 1004 MDEPTSGLDARAAAIV---MRTVRNTVDTGRT 1032
+DE TS +D + + M + G+T
Sbjct: 515 LDEATSNVDTKTEKSIQAAMWKLM----EGKT 542
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 34/163 (20%)
Query: 872 LMGVSGAGKTTLMDVLSGRKTGGYIT-GNITISGY------PKKQET---FARISGYCEQ 921
L+G SG+GK+TL+ ++G T G I PK + F Q
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKDRNVGLVF--------Q 82
Query: 922 NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981
N P +TVY+++ + LR P + + + + EV +++ + L L P L
Sbjct: 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAKMLHIDKL---LNRYP--WQL 134
Query: 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1022
S Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFD 1046
RL +++ L S++ +DEPT LD ++ + + V+ H ++ D
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1047 AFDELFLMKRGGQEIYVGPLG 1067
A D + I +
Sbjct: 128 AADHV---------IRISLEN 139
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 44/204 (21%), Positives = 84/204 (41%), Gaps = 36/204 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP-KKQETFARI 915
L G+S R G + +++G SG+GK+T + ++ + G I ++G
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQ 79
Query: 916 SGYCEQNDIHS---------------PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
++N + +TV E+++ + P +V ++ E +
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARERAL 134
Query: 961 ELVELKPLIQSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
+ + VG+ LS Q++R++IA L P ++ DEPTS LD
Sbjct: 135 KYLAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Query: 1015 AAAIVMRTVRNTVDTGRTVVCTIH 1038
V+R ++ + G+T+V H
Sbjct: 188 LVGEVLRIMQQLAEEGKTMVVVTH 211
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1206 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.9 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.9 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.9 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.88 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.87 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.86 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.86 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.85 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.82 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.82 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.82 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.81 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.81 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.8 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.8 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.79 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.77 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.77 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.76 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.75 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.75 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.74 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.74 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.73 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.73 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.73 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.73 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.72 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.7 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.7 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.7 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.7 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.7 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.69 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.68 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.65 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.65 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.65 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.64 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.64 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.63 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.63 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.63 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.63 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.62 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.61 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.61 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.6 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.59 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.59 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.58 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.57 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.56 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.54 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.53 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.53 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.52 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.52 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.51 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.51 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.5 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.49 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.49 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.48 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.46 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.46 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.46 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.46 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.46 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.46 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.46 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.46 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.45 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.45 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.44 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.44 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.43 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.42 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.42 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.4 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.4 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.38 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.36 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.36 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.36 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.35 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.35 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.34 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.33 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.3 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.29 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.28 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.27 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.27 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.26 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.25 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.25 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.24 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.24 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.23 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.22 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.22 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.22 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.22 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.21 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.21 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.21 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.19 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.17 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.15 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.15 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.14 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.14 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.13 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.12 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.12 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.11 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.09 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.08 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.07 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.07 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.07 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.06 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.06 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.06 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.05 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.04 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.03 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.02 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.0 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.99 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.98 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.97 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.96 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.95 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.93 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.93 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.93 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.91 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.91 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.89 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.86 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.85 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.84 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.84 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.83 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.82 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.81 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.79 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.76 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.75 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.75 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.73 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.71 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.7 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.69 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.68 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.68 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.67 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.64 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.64 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.61 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.53 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.53 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.53 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.52 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.48 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.45 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.45 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.43 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.42 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.42 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.42 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.41 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.39 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.37 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.36 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.35 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.34 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.32 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.31 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.29 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.29 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.28 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.28 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.27 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.25 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.2 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.19 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.16 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.12 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.12 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.03 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.03 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.99 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.98 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.97 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.94 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.92 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.91 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.9 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.88 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.84 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.82 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.82 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.81 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.8 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.78 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.75 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.74 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.68 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.67 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.65 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.57 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.54 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.54 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.51 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.49 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.49 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.48 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.47 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.46 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.46 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.45 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.45 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.44 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.41 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.4 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.39 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.39 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.38 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.37 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.36 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.34 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.32 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.32 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.31 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.3 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.28 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.27 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.26 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.22 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.21 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.19 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.19 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.19 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.16 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.15 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.14 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.11 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.05 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.03 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.01 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.01 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.99 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.99 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 96.97 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.95 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.91 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.91 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.91 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.9 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.83 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.77 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.75 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.75 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.75 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.74 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.71 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.7 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.7 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.65 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.62 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.59 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.58 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.57 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.55 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.53 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.52 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.5 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.47 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.47 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.46 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.44 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.41 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.36 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.36 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.34 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.31 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.31 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.29 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.29 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.28 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.23 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.23 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.22 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.2 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.18 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.18 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.15 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.15 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.14 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.13 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.11 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.1 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.06 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.04 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.04 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.97 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.93 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.92 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.92 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.83 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.83 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.83 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.82 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.81 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.8 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.79 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.79 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.77 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.76 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.74 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.69 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.68 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 95.67 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.66 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.62 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.6 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.55 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.54 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.52 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.48 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.47 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.45 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.43 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.43 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.42 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.41 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.39 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.38 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.37 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.3 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.28 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.28 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.23 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.22 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.22 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.18 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.17 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.17 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.12 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.11 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.07 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.04 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.03 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.01 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.96 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.89 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.85 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 94.82 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.76 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.68 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.67 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.65 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.65 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.64 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.63 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.61 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.6 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.54 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.53 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.45 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.43 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 94.4 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 94.39 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.39 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.39 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 94.34 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 94.34 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.33 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.32 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.3 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 94.26 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 94.19 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.17 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.16 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.16 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 94.16 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-72 Score=750.05 Aligned_cols=215 Identities=28% Similarity=0.407 Sum_probs=182.7
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+|+|+.. +..++|+||||+|+|||++||+||||||||||+++|.|..++ .+|+|.|||.+
T Consensus 1075 g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETTEE
T ss_pred CeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC--CCCEEEECCEE
Confidence 469999999998632 124599999999999999999999999999999999998764 47999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~ 976 (1206)
+.. ..+|+.++||||++.++. -|++|||.|+. .|.+.+ ++.++++++..++.+. .|+.+|..
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccC---CCCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 754 456788999999999886 59999998752 122222 3458999999998654 45566654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
| .+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|||+++|.++. ...||+|++|++
T Consensus 1215 G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1215 G-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN 1290 (1321)
T ss_dssp S-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS
T ss_pred C-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEEC
Confidence 3 5799999999999999999999999999999999999999999999865 48999999999874 577999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++.+|+.
T Consensus 1291 -G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 -GTIIEKGTH 1299 (1321)
T ss_dssp -SSEEEEECH
T ss_pred -CEEEEECCH
Confidence 799999985
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-66 Score=694.72 Aligned_cols=215 Identities=27% Similarity=0.382 Sum_probs=176.6
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||++.|+.. +...+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 1029 g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSSC
T ss_pred CcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 469999999988532 123589999999999999999999999999999999998774 48999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.. ..+++.+|||+|++.+++ .||+||+.++...+ ..+. +.++++++..++.+.. |+.+|..
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCH----HHHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 754 335678999999997764 79999998753211 1222 3366677777765443 4455544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+..|||||||||+|||||+++|+||+|||||||||+.++..|++.|+++ .+|+|||+++|+++. + ..||+|++|++
T Consensus 1169 -G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~ 1244 (1284)
T 3g5u_A 1169 -GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN 1244 (1284)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET
T ss_pred -CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999885 459999999999984 4 66999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 1245 -G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 -GKVKEHGTH 1253 (1284)
T ss_dssp -BEEEEEECH
T ss_pred -CEEEEECCH
Confidence 899999985
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-57 Score=556.60 Aligned_cols=202 Identities=23% Similarity=0.288 Sum_probs=168.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|+++.+. + ..|+++||+|++||++||+|||||||||||++|+|...+ .+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE-----
Confidence 478888887653 1 368999999999999999999999999999999997664 3687765
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.+.+||++|+....+.+||.|++.+...... ...+.++++++.++|.+..++.+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 2358999999877788999998865311000 11345789999999998888874 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHHhcCeEEEEec-CcEEEEEcC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGP 1065 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p~~~i~~~~d~v~ll~~-gg~~~~~g~ 1065 (1206)
||+||++|+.+|+||||||||+|||+.++..+++.|++++ +.|.|||+++|++. .+...+|++++|+. .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 46999999999986 57788999999973 267788898
Q ss_pred CCc
Q 000971 1066 LGR 1068 (1206)
Q Consensus 1066 ~~~ 1068 (1206)
+.+
T Consensus 558 p~~ 560 (607)
T 3bk7_A 558 PMG 560 (607)
T ss_dssp CEE
T ss_pred HHH
Confidence 743
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-57 Score=550.69 Aligned_cols=202 Identities=24% Similarity=0.288 Sum_probs=167.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++|+++.+. . ..|+++||+|++||++||+||||||||||+++|+|...+ .+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE-----
Confidence 478888887653 1 368999999999999999999999999999999997663 3687765
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
...+||++|+....+.+||.|++......... ..+.++++++.+++.+..++.+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 23589999998777889999987643111100 1245788999999988877774 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEec-CcEEEEEcC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGP 1065 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~-gg~~~~~g~ 1065 (1206)
||+||++|+.+|+||||||||+|||+.++..|++.|+++++ .|.|||+++|++. .+...||++++|+. .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 99999999999999999999999999999999999999874 5999999999986 57789999999984 267888898
Q ss_pred CCc
Q 000971 1066 LGR 1068 (1206)
Q Consensus 1066 ~~~ 1068 (1206)
+.+
T Consensus 488 ~~~ 490 (538)
T 1yqt_A 488 PMG 490 (538)
T ss_dssp CEE
T ss_pred HHH
Confidence 743
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=536.40 Aligned_cols=216 Identities=21% Similarity=0.249 Sum_probs=172.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|++..+. . ..|+++|++|++||++||+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC--
T ss_pred eEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCe--
Confidence 467788876653 1 357888999999999999999999999999999998764 4799987652
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.++|++|+.......||+|++.+...... .. ....++++++.++|.+..++.+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDAL--ST----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSSTT--CT----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------eeEeechhcccccCCCHHHHHHHhhhhcc--ch----hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 47999998777678999999987421111 01 1234788999999998888875 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecC-cEEEEEcC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG-GQEIYVGP 1065 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~g-g~~~~~g~ 1065 (1206)
||+|||||+.+|+||||||||+|||+.++..|++.|+++++ .|.|||+++|++. ++...||||++|+.+ |.....|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5999999999987 577889999999842 45556666
Q ss_pred CCcchhHHHHHHHhC
Q 000971 1066 LGRHSCQLISYFEAI 1080 (1206)
Q Consensus 1066 ~~~~~~~~~~yf~~~ 1080 (1206)
...-...+..|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhc
Confidence 543223344555544
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-55 Score=552.93 Aligned_cols=183 Identities=21% Similarity=0.262 Sum_probs=148.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCC-CCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHD-NHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1206)
+.+|+|+|+.|++|++++|+|||||||||||++|+| |+| +|.+.. ....++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~---~~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQ---EECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCT---TTSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccc---cceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 222 333321 112468999874 67889999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccccCcccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGDEMIR 322 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (1206)
.|++.+ ...+. ...++.+|+.+||. +..+..++
T Consensus 514 ~e~l~~--~~~~~---------------------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVGT---------------------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSSC---------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--hhcCH---------------------------------------HHHHHHHHHHcCCChhhhcCCcc-----
Confidence 999975 11100 01245678999994 56665554
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||++|+.+|++|||||||+|||+.+..++.+.|++ . +.+|+.++|+..++.++||+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 6999999999999999999999999999999999999999999986 2 4556668999999999999999999999
Q ss_pred EE-EecChHHH
Q 000971 403 IV-YQGPRELV 412 (1206)
Q Consensus 403 iv-~~G~~~~~ 412 (1206)
++ +.|+++++
T Consensus 623 iv~~~G~~~e~ 633 (986)
T 2iw3_A 623 LRKYKGNFTEF 633 (986)
T ss_dssp EEEEESCHHHH
T ss_pred eecCCCCHHHH
Confidence 97 78987765
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-54 Score=541.26 Aligned_cols=214 Identities=22% Similarity=0.293 Sum_probs=135.8
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCCC----ceeEEEECCee
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLL---------------------LALAGKLDSSLK----VSGRVTYNGHD 218 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL---------------------~~LaG~l~~~~~----~~G~I~~nG~~ 218 (1206)
..++|+|||++|++||+++|+||||||||||| +.+.|...++.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34589999999999999999999999999998 778887776521 25677788765
Q ss_pred CCCCCccceEEEecCCCC-------------------CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCC
Q 000971 219 MGEFVPERTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279 (1206)
Q Consensus 219 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~ 279 (1206)
.... +++.++||+|... .++.+||+||+.+....... ......
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH------
Confidence 5432 2344566665432 24678999999874321100 000000
Q ss_pred ChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc-ccccccCcccccCChhhhhHHHHHHHHhcCCc--cceeecCCCCCCH
Q 000971 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVC-ADTMVGDEMIRGISGGERKRVTTGEMMVGPAL--ALFMDEISTGLDS 356 (1206)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~--vlllDEptsgLDs 356 (1206)
. +.. ..+.... -.+++.+||.+. .+..++ .|||||||||+|||||+.+|+ +|+|||||+|||+
T Consensus 172 -~----~~~---~~~~~~~-~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -A----RLI---LREIRDR-LGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -H----HHH---HHHHHHH-HHHHHHcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 0 000 0001111 235888999864 455544 699999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE------cCCeEEEecChHHH
Q 000971 357 STTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELV 412 (1206)
Q Consensus 357 ~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL------~~G~iv~~G~~~~~ 412 (1206)
.+..++++.|+++.. . +.+|+.++|+...+ ..||+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-L-GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHH-T-TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 999999999999864 3 45566688888754 569999999 89999999988765
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=523.94 Aligned_cols=201 Identities=18% Similarity=0.194 Sum_probs=160.5
Q ss_pred EEeecceeeeeCC-----eEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCC
Q 000971 855 VLLNGLSGAFRPG-----VLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 929 (1206)
Q Consensus 855 ~vL~~vs~~i~~G-----~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~ 929 (1206)
.+++++|+++++| |++||+||||||||||+++|+|...+. +|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCcC------cc----CCcEEEecccccccCCc
Confidence 4788888888888 789999999999999999999976643 4541 11 23589999987766678
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000971 930 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1009 (1206)
Q Consensus 930 Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTs 1009 (1206)
||+|++... ++. .... ...++++++.++|.+..++.+ ..|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--cccc---HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 221 1111 235788999999999888874 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHHhcCeEEEEec-CcEEEEEcCCCcchhHHHHHHHhC
Q 000971 1010 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPLGRHSCQLISYFEAI 1080 (1206)
Q Consensus 1010 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p~~~i~~~~d~v~ll~~-gg~~~~~g~~~~~~~~~~~yf~~~ 1080 (1206)
|||+.++..+++.|++++ +.|.|||+++|++. ++...+||+++|+. .|++++.|++.+-......++..+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 999999999999999986 45999999999986 57788999999985 278999998854333333444444
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=396.15 Aligned_cols=218 Identities=22% Similarity=0.275 Sum_probs=191.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-++++||+++|... .+...+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 48999999988632 1235799999999999999999999999999999999998764 489999999886
Q ss_pred Ccc------cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 000971 908 KQE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1206)
Q Consensus 908 ~~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~L 981 (1206)
... ..++.+|||+|++.+++.+||+||+.|+..++ ..+.++.+++++++|+.+||.+..++.+ ..|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 431 23567999999999999999999999987654 2456677788999999999999888874 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
||||||||+|||||+.+|+||||||||||||+.++..|++.|+++.++ |.|||++||+++ .+...|||+++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999754 999999999987 57788999999985 799
Q ss_pred EEEcCC
Q 000971 1061 IYVGPL 1066 (1206)
Q Consensus 1061 ~~~g~~ 1066 (1206)
++.|+.
T Consensus 243 v~~g~~ 248 (366)
T 3tui_C 243 IEQDTV 248 (366)
T ss_dssp EECCBH
T ss_pred EEEcCH
Confidence 999985
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=373.43 Aligned_cols=220 Identities=22% Similarity=0.344 Sum_probs=186.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||+++|+.. .....+|+|||++|++||++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 6789999988521 1124699999999999999999999999999999999998764 4899999998764
Q ss_pred ccc-------ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-ccccCCCCCCC
Q 000971 909 QET-------FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-QSLVGLPGVSG 980 (1206)
Q Consensus 909 ~~~-------~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~~g~~~~~~ 980 (1206)
... .++.+|||+|++.+++.+||+||+.++...+.......++..+.+.++++.++|.+.. ++. +..
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 321 1235999999999999999999999976554323345666677899999999998753 665 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ +.+.+|++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4588999999985 79
Q ss_pred EEEEcCCC
Q 000971 1060 EIYVGPLG 1067 (1206)
Q Consensus 1060 ~~~~g~~~ 1067 (1206)
++..|+..
T Consensus 223 i~~~~~~~ 230 (235)
T 3tif_A 223 VEREEKLR 230 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEcChh
Confidence 99888763
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=392.76 Aligned_cols=213 Identities=24% Similarity=0.369 Sum_probs=190.7
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++++. +..+|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 4 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEECC
Confidence 78999998873 35799999999999999999999999999999999998774 4899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ..++.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..|||||||
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQ 140 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 140 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHH
Confidence 32 23567999999999999999999999987654 2456677788999999999999888874 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+|||||+.+|+|||||||||+||+..+..+++.|+++.++ |.|||++||+++ ++..++|||++|++ |+++..|+.
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~ 218 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 218 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 999999999999999999999999999999999999999765 999999999987 68899999999985 799999986
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-42 Score=381.22 Aligned_cols=216 Identities=25% Similarity=0.369 Sum_probs=186.8
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||+++|+ ++..+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 489999999874 123599999999999999999999999999999999998764 489999999876
Q ss_pred C--c---ccccceEEEeecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 000971 908 K--Q---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1206)
Q Consensus 908 ~--~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~L 981 (1206)
. . ..+++.+|||+|++. .+..+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 1 124567999999863 344789999999986543 3456666778999999999999888874 479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++ ++|+|||+++|+++ .+...||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999998 57788999999985 799
Q ss_pred EEEcCCC
Q 000971 1061 IYVGPLG 1067 (1206)
Q Consensus 1061 ~~~g~~~ 1067 (1206)
++.|+..
T Consensus 223 ~~~g~~~ 229 (275)
T 3gfo_A 223 ILQGNPK 229 (275)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9999863
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=391.36 Aligned_cols=214 Identities=26% Similarity=0.407 Sum_probs=187.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||++++. +..+|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 378999998873 35799999999999999999999999999999999998774 489999999875
Q ss_pred ----Cc-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 908 ----KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 908 ----~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 21 234567999999999999999999999976543 2334566778999999999999998874 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
|||||||+|||||+.+|+||||||||||||+..+..+++.|+++. +.|.|||++||+++ ++..++|||++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999887764 56999999999987 68889999999985 7999
Q ss_pred EEcCC
Q 000971 1062 YVGPL 1066 (1206)
Q Consensus 1062 ~~g~~ 1066 (1206)
..|+.
T Consensus 219 ~~g~~ 223 (359)
T 3fvq_A 219 QTASP 223 (359)
T ss_dssp EEECH
T ss_pred EEeCH
Confidence 99986
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=368.51 Aligned_cols=212 Identities=22% Similarity=0.274 Sum_probs=183.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-++++|+++.+. ++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 378999998873 24699999999999999999999999999999999998764 489999999876
Q ss_pred Ccc------ccc-ceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 000971 908 KQE------TFA-RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1206)
Q Consensus 908 ~~~------~~~-~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 980 (1206)
... .++ +.+|||+|++.+++.+||+||+.|....+. ...++.++.++++++.++|.+..++.+ ..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YE 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 431 122 569999999999999999999998765431 234455667899999999998888774 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+++ .+ ..||++++|++ |++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~-G~i 217 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKD-GKV 217 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEET-TEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999877999999999976 34 88999999985 799
Q ss_pred EEEcC
Q 000971 1061 IYVGP 1065 (1206)
Q Consensus 1061 ~~~g~ 1065 (1206)
++.|+
T Consensus 218 ~~~g~ 222 (224)
T 2pcj_A 218 VGEIT 222 (224)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 98886
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=375.05 Aligned_cols=214 Identities=26% Similarity=0.344 Sum_probs=185.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-++++||++.+. ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 389999998873 24699999999999999999999999999999999998764 489999999876
Q ss_pred C--c---ccccceEEEeecCCCCCCCCCHHHHHHHhh-hhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 000971 908 K--Q---ETFARISGYCEQNDIHSPFVTVYESLLYSA-WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1206)
Q Consensus 908 ~--~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~L 981 (1206)
. . ..+++.+|||+|++.+++.+||+||+.|+. ..+ ..+.++.++.++++++.++|.+..++.+ ..|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 123557999999999999999999999864 222 2234455667899999999998888774 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999986 56778999999985 7899
Q ss_pred EEcCC
Q 000971 1062 YVGPL 1066 (1206)
Q Consensus 1062 ~~g~~ 1066 (1206)
+.|+.
T Consensus 239 ~~g~~ 243 (263)
T 2olj_A 239 EEGKP 243 (263)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98874
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=375.59 Aligned_cols=213 Identities=21% Similarity=0.263 Sum_probs=185.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++.+. ++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 7 l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 88999998873 24699999999999999999999999999999999998764 4899999998764
Q ss_pred c----------------ccccceEEEeecCCCCCCCCCHHHHHHHhh-hhcCCCCCCHHHHHHHHHHHHHHcCCccc-cc
Q 000971 909 Q----------------ETFARISGYCEQNDIHSPFVTVYESLLYSA-WLRLPPEVDSETRKMFIEEVMELVELKPL-IQ 970 (1206)
Q Consensus 909 ~----------------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~ 970 (1206)
. ..+++.+|||+|++.+++.+||+||+.|+. ..+ ..+.++.++.++++++.++|.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 123457999999999999999999999864 222 23344556779999999999988 77
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCe
Q 000971 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDE 1050 (1206)
Q Consensus 971 ~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~ 1050 (1206)
+.+ ..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+...||+
T Consensus 149 ~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 764 579999999999999999999999999999999999999999999999877999999999986 56778999
Q ss_pred EEEEecCcEEEEEcCC
Q 000971 1051 LFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1051 v~ll~~gg~~~~~g~~ 1066 (1206)
+++|++ |++++.|+.
T Consensus 223 v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 223 VIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999985 799998874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-41 Score=371.48 Aligned_cols=214 Identities=24% Similarity=0.327 Sum_probs=185.7
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||++.+. ++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 489999998873 24699999999999999999999999999999999998764 489999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 908 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
.. ..+++.+|||+|++.+++.+||+||+.|...++. ...++.++.++++++.++|.+..++.+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 2245679999999999999999999998764431 233444567899999999999888874 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986 46677999999985 78998887
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=373.70 Aligned_cols=217 Identities=24% Similarity=0.287 Sum_probs=185.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||++.+. ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 488999998873 24699999999999999999999999999999999998764 489999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHhhhh-cCCC---------CCCHHHHHHHHHHHHHHcCCcccccccc
Q 000971 908 KQE----TFARISGYCEQNDIHSPFVTVYESLLYSAWL-RLPP---------EVDSETRKMFIEEVMELVELKPLIQSLV 973 (1206)
Q Consensus 908 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~l-r~~~---------~~~~~~~~~~v~~~l~~l~L~~~~~~~~ 973 (1206)
... ..++.+|||+|++.+++.+||+||+.|+... +... ....++.++.++++++.++|.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 1345699999999888999999999986533 1110 0122344567899999999998888874
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEE
Q 000971 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053 (1206)
Q Consensus 974 g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~l 1053 (1206)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+++ ++...+|++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999997 57788999999
Q ss_pred EecCcEEEEEcCC
Q 000971 1054 MKRGGQEIYVGPL 1066 (1206)
Q Consensus 1054 l~~gg~~~~~g~~ 1066 (1206)
|++ |++++.|+.
T Consensus 226 l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 226 MFN-GQIIAEGRG 237 (257)
T ss_dssp EET-TEEEEEEES
T ss_pred EEC-CEEEEEeCH
Confidence 985 789998875
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=420.82 Aligned_cols=196 Identities=27% Similarity=0.390 Sum_probs=146.1
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHH---------hhhcCCCC--C--CeeE------EEEEEcCccCCccc-----
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLM---------DVLSGRKT--G--GYIT------GNITISGYPKKQET----- 911 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl---------~~L~g~~~--~--~~~~------G~i~i~g~~~~~~~----- 911 (1206)
.|+|||++|++|+++||+||||||||||+ +.+.+... + ..+. +-+.+++.+.....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 33333211 1 0122 34556554431100
Q ss_pred ----------------------------c-----------cceEEEeecCCCCCC-------------------------
Q 000971 912 ----------------------------F-----------ARISGYCEQNDIHSP------------------------- 927 (1206)
Q Consensus 912 ----------------------------~-----------~~~~gyv~q~~~~~~------------------------- 927 (1206)
| .+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0 012467777665554
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC-
Q 000971 928 -------FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 999 (1206)
Q Consensus 928 -------~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P- 999 (1206)
.+||.|++.|.... .....+.++|+.+||.... .|.+ +..|||||||||.||+||+.+|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 36788888774321 1234577899999997532 2222 4579999999999999999875
Q ss_pred --cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe-----cCcEEEEEcCC
Q 000971 1000 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1066 (1206)
Q Consensus 1000 --~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~-----~gg~~~~~g~~ 1066 (1206)
+||||||||+|||+.+...|++.|++++++|.|||+++|+++ +...+|+|++|. +||++++.|+.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999988999999999975 456799999993 47999999985
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=381.77 Aligned_cols=207 Identities=22% Similarity=0.320 Sum_probs=181.4
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc------cceEEEecCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNH 237 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~ 237 (1206)
...+|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 467999999999999999999999999999999999999997 9999999999876543 3579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++.+||+||+.|+.+..+... .+....++++|+.+||.+.++..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh
Confidence 999999999999876543210 1123356788999999988776554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
.|||||||||+|||||+.+|++|||||||+|||+.++..|++.|+++.+.. +.+|+.++|+..++..+||+|++
T Consensus 163 -----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 163 -----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp -----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 699999999999999999999999999999999999999999999987543 45566688999999999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999874
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=384.11 Aligned_cols=213 Identities=23% Similarity=0.346 Sum_probs=186.4
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++++. ++.+|+||||++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECC
Confidence 78899998873 35699999999999999999999999999999999998764 4899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ..++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999975433 2233444567999999999999888874 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998765 999999999986 67889999999985 799999985
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-41 Score=384.26 Aligned_cols=215 Identities=23% Similarity=0.365 Sum_probs=188.6
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||+++++ +++.+|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 589999998762 123589999999999999999999999999999999998764 489999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 234567999999999999999999999986554 2345566778999999999999988874 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+.+|+||||||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 999999999986 67889999999985 79999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 230 ~ 230 (355)
T 1z47_A 230 P 230 (355)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=365.89 Aligned_cols=213 Identities=23% Similarity=0.333 Sum_probs=181.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-++++||++++. ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 388999998873 24699999999999999999999999999999999998764 489999999876
Q ss_pred Cccc----ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC-CccccccccCCCCCCCCC
Q 000971 908 KQET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-LKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 908 ~~~~----~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~~g~~~~~~LS 982 (1206)
.... .++.+||++|++.+++.+||+||+.|..... ...++.++.++++++.++ |.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCC
Confidence 4321 2345999999999999999999999864211 122334566889999995 988777763 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999878999999999986 57789999999985 78998
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|+.
T Consensus 220 ~g~~ 223 (240)
T 1ji0_A 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred EcCH
Confidence 8874
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=371.65 Aligned_cols=213 Identities=24% Similarity=0.310 Sum_probs=184.8
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++|++|.+. ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 589999999874 35799999999999999999999999999999999998764 379999999876
Q ss_pred Ccc---cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH
Q 000971 908 KQE---TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1206)
Q Consensus 908 ~~~---~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 984 (1206)
... ..++.+||++|++.+++.+||+||+.|+.... ...+.++.++++++.++|.+..++.+ ..||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 432 34566899999998888899999999876433 11233456899999999999888874 479999
Q ss_pred HHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 985 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 985 qrqrl~ia~aL~~------~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
|||||+|||||+. +|+||||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 57788999999985
Q ss_pred cEEEEEcCCC
Q 000971 1058 GQEIYVGPLG 1067 (1206)
Q Consensus 1058 g~~~~~g~~~ 1067 (1206)
|++++.|+..
T Consensus 224 G~i~~~g~~~ 233 (266)
T 4g1u_C 224 GKLVACGTPE 233 (266)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEEcCHH
Confidence 7999999864
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=383.82 Aligned_cols=213 Identities=26% Similarity=0.389 Sum_probs=187.5
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++++. ++.+|+||||++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 78899988763 24699999999999999999999999999999999998764 4899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ..++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999986544 2345566778999999999999888874 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998755 999999999986 67889999999985 799999985
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=384.16 Aligned_cols=214 Identities=25% Similarity=0.348 Sum_probs=188.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||++++. ++.+|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 67 (372)
T 1g29_1 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEEC
Confidence 378899998873 35699999999999999999999999999999999998764 489999999875
Q ss_pred Cc-------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 000971 908 KQ-------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1206)
Q Consensus 908 ~~-------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 980 (1206)
.. ...++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 139 (372)
T 1g29_1 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (372)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred ccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----cc
Confidence 32 123567999999999999999999999986554 2345566678999999999999888874 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++.++ |.|||++||++. ++..++|++++|++ |+
T Consensus 140 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~ 217 (372)
T 1g29_1 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (372)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999998765 999999999986 67889999999985 79
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
++..|+.
T Consensus 218 i~~~g~~ 224 (372)
T 1g29_1 218 LQQVGSP 224 (372)
T ss_dssp EEEEECH
T ss_pred EEEeCCH
Confidence 9999985
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=383.56 Aligned_cols=213 Identities=23% Similarity=0.358 Sum_probs=181.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++++. ++.+|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECC
Confidence 88999998873 35699999999999999999999999999999999998764 4899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ..++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999975433 2345566778999999999999988874 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998765 999999999986 67889999999985 799999985
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=384.03 Aligned_cols=213 Identities=26% Similarity=0.378 Sum_probs=187.1
Q ss_pred EEEEeeEEEEecchhhhhcccccCceE--EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLV--LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~--vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
++++||++++. ++. +|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 78899998874 124 99999999999999999999999999999999998764 48999999987
Q ss_pred CCc------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 000971 907 KKQ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1206)
Q Consensus 907 ~~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 980 (1206)
+.. ...++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 532 234577999999999999999999999976443 2345566778999999999999988874 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 999999999986 67889999999985 79
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
++..|+.
T Consensus 219 i~~~g~~ 225 (353)
T 1oxx_K 219 LVQVGKP 225 (353)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999985
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=408.69 Aligned_cols=195 Identities=28% Similarity=0.371 Sum_probs=149.6
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhc-C----C-----CCCC---eeEE------EEEEcCccCCccc-----
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS-G----R-----KTGG---YITG------NITISGYPKKQET----- 911 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~-g----~-----~~~~---~~~G------~i~i~g~~~~~~~----- 911 (1206)
+|+|||++|++|+++||+|+||||||||+++|+ | . ..+| .+.| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999864 1 0 1222 2344 5889987752100
Q ss_pred -----------------ccceEEEeecCCCCC----------------------C-------------------------
Q 000971 912 -----------------FARISGYCEQNDIHS----------------------P------------------------- 927 (1206)
Q Consensus 912 -----------------~~~~~gyv~q~~~~~----------------------~------------------------- 927 (1206)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 013357776643221 1
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000971 928 -------FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 999 (1206)
Q Consensus 928 -------~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P 999 (1206)
.+||.|++.|... . .. ...+.++|+.++|.. ..++. +..|||||||||.||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3578888876431 1 11 223578999999987 55555 3579999999999999999875
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe-----cCcEEEEEcCC
Q 000971 1000 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1066 (1206)
Q Consensus 1000 ---~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~-----~gg~~~~~g~~ 1066 (1206)
+||||||||+|||+.+...+++.|++++++|.|||+++|++. ....+|++++|. ++|++++.|+.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 357899999995 46899998874
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-40 Score=377.19 Aligned_cols=206 Identities=22% Similarity=0.348 Sum_probs=178.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeC----CCCCc-cceEEEecCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM----GEFVP-ERTAAYISQHDNHIG 239 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~----~~~~~-~~~~~yv~Q~d~~~~ 239 (1206)
.++|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++ ....+ ++.++||+|+..+||
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 56999999999999999999999999999999999999998 99999999987 33323 367999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
.+||+||+.|+.+.++... .+....++++++.+||++..|..++
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~-- 137 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYPH-- 137 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCGG--
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCChh--
Confidence 9999999999865433211 0122356788999999988876554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|+
T Consensus 138 ---~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~-g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 138 ---ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN-GKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 699999999999999999999999999999999999999999888776544 5666678999999999999999999
Q ss_pred CCeEEEecChHHHH
Q 000971 400 DGQIVYQGPRELVL 413 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1206)
+|+++..|+++++.
T Consensus 214 ~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 214 QGRILQTASPHELY 227 (359)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEEeCHHHHH
Confidence 99999999999875
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-40 Score=378.17 Aligned_cols=207 Identities=24% Similarity=0.362 Sum_probs=182.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc-ceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV 243 (1206)
..+|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+. +.++||+|+..++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 56999999999999999999999999999999999999998 99999999999876554 679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+..+... .+.+..++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p-----~~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKP-----KA 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCG-----GG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hH
Confidence 999999876543210 112345678899999998777555 47
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986544 45566689999999999999999999999
Q ss_pred EEecChHHHHH
Q 000971 404 VYQGPRELVLE 414 (1206)
Q Consensus 404 v~~G~~~~~~~ 414 (1206)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998753
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-40 Score=365.17 Aligned_cols=217 Identities=21% Similarity=0.314 Sum_probs=180.9
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++++.... ...+.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECc
Confidence 67899998874100 0015699999999999999999999999999999999998764 4899999998765
Q ss_pred cccccceEEEeecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc--cccccccCCCCCCCCCHHH
Q 000971 909 QETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK--PLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 909 ~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~g~~~~~~LSgGq 985 (1206)
...+++.+|||+|++ ..++.+||+||+.|...... ..++.+++++++++.++|. +..++.+ ..|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 333456799999995 45677999999998643221 1122234688999999998 8888774 5799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||+++|+++ .+...||++++|++ |++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999777999999999997 46678999999985 78998887
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-40 Score=377.34 Aligned_cols=209 Identities=21% Similarity=0.292 Sum_probs=182.5
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++++. ++ +|+||||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 57888888763 34 99999999999999999999999999999999998764 4899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 Q-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
. ...++.+|||+|+..++|.+||+||+.|+...+.. ..+ ++++++++.++|.+..++.+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 22356799999999999999999999998655421 112 56899999999999988874 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.+ .|.|||++||++. ++..++|++++|++ |+++..|+.
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999865 4999999999986 67889999999985 789999885
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-40 Score=361.78 Aligned_cols=218 Identities=24% Similarity=0.271 Sum_probs=175.4
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++++. ++.+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 78999998873 24699999999999999999999999999999999997211246899999998764
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCC-ccccccccCCCCCCC-CC
Q 000971 909 QE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL-KPLIQSLVGLPGVSG-LS 982 (1206)
Q Consensus 909 ~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L-~~~~~~~~g~~~~~~-LS 982 (1206)
.. . .++.++|++|++.+++.+||+||+.+............++..+.++++++.++| .+..++.+ .. ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 31 1 133489999999999999999999886532111112233445678999999999 57777764 35 99
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHh-cCeEEEEecCcEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRGGQEI 1061 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~-~d~v~ll~~gg~~~ 1061 (1206)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999767999999999987 35555 599999985 7999
Q ss_pred EEcCC
Q 000971 1062 YVGPL 1066 (1206)
Q Consensus 1062 ~~g~~ 1066 (1206)
+.|+.
T Consensus 224 ~~g~~ 228 (250)
T 2d2e_A 224 ATGGP 228 (250)
T ss_dssp EEESH
T ss_pred EEeCH
Confidence 98875
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-40 Score=368.21 Aligned_cols=219 Identities=23% Similarity=0.351 Sum_probs=180.9
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
+..++++||++.+. ++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.
T Consensus 19 ~~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~ 83 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGK 83 (279)
T ss_dssp CEEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTB
T ss_pred CceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCE
Confidence 33589999998873 24699999999999999999999999999999999998764 4899999998
Q ss_pred cCC--c---ccccceEEEeecCCCC--CCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCC
Q 000971 906 PKK--Q---ETFARISGYCEQNDIH--SPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 977 (1206)
Q Consensus 906 ~~~--~---~~~~~~~gyv~q~~~~--~~~~Tv~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~ 977 (1206)
+.. . ..+++.+|||+|++.+ .+.+||+||+.|+...... .....++..+.++++++.++|.+..++.+
T Consensus 84 ~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 159 (279)
T 2ihy_A 84 MPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI---- 159 (279)
T ss_dssp CCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG----
T ss_pred EcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh----
Confidence 764 2 2245679999998754 3457999999885321100 01112334567899999999998888774
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCchHHHHhcCeEEEEe
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|| |++||+++ ++...||++++|+
T Consensus 160 -~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 160 -GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK 237 (279)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEE
T ss_pred -hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEE
Confidence 4799999999999999999999999999999999999999999999997669999 99999987 4667899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |++++.|+.
T Consensus 238 ~-G~i~~~g~~ 247 (279)
T 2ihy_A 238 D-GQSIQQGAV 247 (279)
T ss_dssp T-TEEEEEEEH
T ss_pred C-CEEEEECCH
Confidence 5 799998875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=404.78 Aligned_cols=195 Identities=27% Similarity=0.349 Sum_probs=144.9
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhh-hcCCC-------CC----------------CeeEE-------EEEEcC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDV-LSGRK-------TG----------------GYITG-------NITISG 904 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~-L~g~~-------~~----------------~~~~G-------~i~i~g 904 (1206)
+|+|||++|++|+++||+|+||||||||+++ |+|.. .+ ....| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 5999999999999999999999999999997 76421 11 12467 789998
Q ss_pred ccCCcccc----------------------cceEEEeec----------------------CCCCCC-------------
Q 000971 905 YPKKQETF----------------------ARISGYCEQ----------------------NDIHSP------------- 927 (1206)
Q Consensus 905 ~~~~~~~~----------------------~~~~gyv~q----------------------~~~~~~------------- 927 (1206)
.++..... .|..||.++ +-.+.+
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 76532100 011122211 111111
Q ss_pred -------------------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-cccccCCCCCCCCCHHHHH
Q 000971 928 -------------------FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 928 -------------------~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~~~LSgGqrq 987 (1206)
.+|+.|++.|... . ...+.+.++|+.++|... .++. +..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~------~---~~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFAD------E---SAIFRALDTLREVGLGYLRLGQP-----ATELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT------S---HHHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhhc------c---hHHHHHHHHHHHcCCCcccccCC-----cccCCHHHHH
Confidence 2355555544211 1 122467899999999873 3444 3579999999
Q ss_pred HHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe-----cCcE
Q 000971 988 RLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQ 1059 (1206)
Q Consensus 988 rl~ia~aL~~~---P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~-----~gg~ 1059 (1206)
||.||++|+.+ |+||||||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|++++|. ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 6999999999999999999999999999988999999999975 34 8899999995 4689
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|+.
T Consensus 816 Iv~~g~~ 822 (842)
T 2vf7_A 816 LVAQGTP 822 (842)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999874
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-40 Score=359.35 Aligned_cols=208 Identities=21% Similarity=0.310 Sum_probs=178.8
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++|+++.+. + +|+|||+++++ +++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 56889988773 1 49999999999 99999999999999999999998764 4899999998764
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 Q-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
. ...++.+|||+|++.+++.+||+||+.|....+ . ....++.++++++.++|.+..++.+ ..|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999999864322 1 1222567899999999998888774 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|+++ ++...||++++|++ |++++.|+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998754 999999999986 57788999999986 789998874
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=354.13 Aligned_cols=207 Identities=23% Similarity=0.270 Sum_probs=170.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc-------ceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-------RTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-------~~~~yv~Q~d~~ 237 (1206)
..+|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++...... +.++||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 56999999999999999999999999999999999999997 99999999998766532 359999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc-cccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA-DTMV 316 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~v 316 (1206)
++.+||+||+.++.......... ..+....+..+++.+||.+.. +..
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~- 142 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAMS-------------------------------GEERRKRALECLKMAELEERFANHK- 142 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCCC-------------------------------HHHHHHHHHHHHHHTTCCGGGTTCC-
T ss_pred CCCCcHHHHHHHHHHhhhccCCC-------------------------------HHHHHHHHHHHHHHCCCChhhhhCC-
Confidence 99999999999976543110000 001223456789999998643 544
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
+..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+..+.| |+.++|+.. +..+||+|+
T Consensus 143 ----~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~t-vi~vtHd~~-~~~~~d~i~ 216 (235)
T 3tif_A 143 ----PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKT-VVVVTHDIN-VARFGERII 216 (235)
T ss_dssp ----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCE-EEEECSCHH-HHTTSSEEE
T ss_pred ----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCE-EEEEcCCHH-HHHhCCEEE
Confidence 44799999999999999999999999999999999999999999999986543555 455677776 568999999
Q ss_pred EEcCCeEEEecChHHH
Q 000971 397 LLSDGQIVYQGPRELV 412 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1206)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=369.82 Aligned_cols=206 Identities=25% Similarity=0.368 Sum_probs=179.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+++|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..++|.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 45899999999999999999999999999999999999997 9999999999876544 4679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+..+... .+....++++++.+||++..+..+ ..
T Consensus 105 ~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~-----~~ 145 (355)
T 1z47_A 105 YDNVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYANRFP-----HE 145 (355)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCc-----cc
Confidence 999999865432110 012235678899999998877655 47
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG-VTSVFVTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865444 4556688999999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
+..|+++++.
T Consensus 225 ~~~g~~~~l~ 234 (355)
T 1z47_A 225 EQFGTPEEVY 234 (355)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=366.31 Aligned_cols=212 Identities=25% Similarity=0.328 Sum_probs=177.4
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
...+.++||+|.|+ +.+.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.
T Consensus 51 ~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCE
Confidence 34699999999884 124699999999999999999999999999999999998764 4899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------ccCC
Q 000971 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS-------LVGL 975 (1206)
Q Consensus 906 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~~g~ 975 (1206)
++.. ..+++.+|||+|++.+++ .||+||+.|+... .. ++.++++++.+++.+..+. .+|.
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CC----HHHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CC----HHHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 8754 235677999999998885 6999999986421 11 2346778888888765433 3443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
. +..|||||||||+|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|||+++|+++. + ..+|+|++|+
T Consensus 187 ~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~ 262 (306)
T 3nh6_A 187 R-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIK 262 (306)
T ss_dssp T-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEE
T ss_pred C-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEE
Confidence 3 357999999999999999999999999999999999999999999999864 7999999999863 4 4599999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 263 ~-G~iv~~G~~ 272 (306)
T 3nh6_A 263 D-GCIVERGRH 272 (306)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 5 799999985
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=359.29 Aligned_cols=207 Identities=25% Similarity=0.326 Sum_probs=175.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-----ccceEEEecCCC-CCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHD-NHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d-~~~ 238 (1206)
..+|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999997 999999999984211 135799999986 345
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
+.+||+||+.|+....+... .+....++.+++.+||++..+..++
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~- 142 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPTH- 142 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBGG-
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCcc-
Confidence 57999999999865432110 1122346788999999988776554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+.. +++|+.++|+..++..+||+|++|
T Consensus 143 ----~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 143 ----CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp ----GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEE
T ss_pred ----cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 699999999999999999999999999999999999999999999986334 455666888999999999999999
Q ss_pred cCCeEEEecChHHHHH
Q 000971 399 SDGQIVYQGPRELVLE 414 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1206)
++|++++.|+++++..
T Consensus 218 ~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 218 KEGRVILQGNPKEVFA 233 (275)
T ss_dssp ETTEEEEEECHHHHTH
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=370.09 Aligned_cols=206 Identities=24% Similarity=0.343 Sum_probs=179.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999997 9999999999876554 4679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+.++.. + .+....++.+++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------K------------------------DEVEKRVVEIARKLLIDNLLDRKP-----TQ 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------H------------------------HHTTHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 99999976543210 0 011234678899999998877655 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG-ITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998865444 4555678999999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
+..|+++++.
T Consensus 213 ~~~g~~~~l~ 222 (359)
T 2yyz_A 213 VQYGTPDEVY 222 (359)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999999874
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-39 Score=370.24 Aligned_cols=206 Identities=25% Similarity=0.391 Sum_probs=179.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999997 9999999999876554 3679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+.++... .+....++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNRYP-----WQ 133 (362)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhCCh-----hh
Confidence 999999865432110 012234678899999998777654 47
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG-ITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC-CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865444 4555678999999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
++.|+++++.
T Consensus 213 ~~~g~~~~~~ 222 (362)
T 2it1_A 213 LQVGTPDEVY 222 (362)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-39 Score=357.80 Aligned_cols=221 Identities=25% Similarity=0.289 Sum_probs=181.1
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.+. ++.+|+||||+|++|+++||+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 489999998873 2469999999999999999999999999999999999732225689999999875
Q ss_pred Ccc---cc-cceEEEeecCCCCCCCCCHHHHHHHhhh-hc---CCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCC
Q 000971 908 KQE---TF-ARISGYCEQNDIHSPFVTVYESLLYSAW-LR---LPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 978 (1206)
Q Consensus 908 ~~~---~~-~~~~gyv~q~~~~~~~~Tv~e~l~~~a~-lr---~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~ 978 (1206)
... .. ++.+||++|++.+++.+||.|++.+... ++ .....+.++.++.++++++.++|. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 431 11 2348999999999999999999987531 21 111223444456789999999996 56666532
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHh-cCeEEEEecC
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRG 1057 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~-~d~v~ll~~g 1057 (1206)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+++ .+... +|++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 249999999999999999999999999999999999999999999998767999999999986 34454 899999985
Q ss_pred cEEEEEcCCC
Q 000971 1058 GQEIYVGPLG 1067 (1206)
Q Consensus 1058 g~~~~~g~~~ 1067 (1206)
|++++.|+..
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 7999999863
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=357.25 Aligned_cols=204 Identities=27% Similarity=0.348 Sum_probs=177.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc---ceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....+ +.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999997 99999999998776542 5699999999888899
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.|+...... .+....++.+++.+||.+..+..++
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDYR---- 140 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBGG----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCcc----
Confidence 999999987542210 0112346778999999988776554
Q ss_pred ccCChhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 322 RGISGGERKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~------~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
.|||||||||+||+||+. +|++|+|||||+|||+.++..+++.|+++.+ .++.+|+.++|+..++..+||+|
T Consensus 141 -~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~-~~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 141 -VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp -GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH-HSSEEEEEECSCHHHHHHHCSEE
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-cCCCEEEEEEcCHHHHHHhCCEE
Confidence 699999999999999999 9999999999999999999999999999865 45567777899999999999999
Q ss_pred EEEcCCeEEEecChHHHH
Q 000971 396 ILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1206)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998763
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=352.20 Aligned_cols=207 Identities=23% Similarity=0.344 Sum_probs=175.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-+.++||++.+.. ++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.
T Consensus 4 ~l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEE------
T ss_pred eEEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE------
Confidence 3789999988730 23699999999999999999999999999999999998764 479997
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
.++.+|||+|++.+++.+||+||+.|........ .......++.++++++.++|.+..++.+ ..||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHH
Confidence 2356899999999888999999999875322110 0112334567899999999998888774 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||+++|+++ .+...||++++|++ |+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCC
Confidence 9999999999999999999999999999999999999999877 999999999986 46788999999986 67 88887
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 212 ~ 212 (253)
T 2nq2_C 212 T 212 (253)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=353.93 Aligned_cols=205 Identities=21% Similarity=0.343 Sum_probs=174.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCC--CCC---ccceEEEecCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG--EFV---PERTAAYISQHDNHIG 239 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~--~~~---~~~~~~yv~Q~d~~~~ 239 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 45999999999999999999999999999999999999987 999999999885 111 1356999999999999
Q ss_pred CCCHHHHHHHHh-hhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 240 EMTVRETLAFSA-RCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 240 ~lTV~Etl~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
.+||+||+.|+. +..+... .+....++.+++.+||.+..+..++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~- 158 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPR----------------------------------EKAEAKAMELLDKVGLKDKAHAYPD- 158 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-
T ss_pred CCCHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-
Confidence 999999999964 3222100 0112346778999999988776554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++..+||+|++|
T Consensus 159 ----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 159 ----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-E-GMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp ----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999999865 3 455666889999999999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999998774
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-39 Score=348.33 Aligned_cols=200 Identities=26% Similarity=0.342 Sum_probs=169.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 46999999999999999999999999999999999999987 9999999999876432 1469999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
++.+||+||+.|+....+... .+....++.+++.+||.+..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPK----------------------------------KEAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh
Confidence 999999999999764332100 0112346778999999988776554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. + .+|+.++|+...+ .+||+|++
T Consensus 140 -----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g-~tvi~vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 -----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-G-TSIVMVTHERELA-ELTHRTLE 211 (224)
T ss_dssp -----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T-CEEEEECSCHHHH-TTSSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEcCCHHHH-HhCCEEEE
Confidence 69999999999999999999999999999999999999999999998653 4 4555577777766 89999999
Q ss_pred EcCCeEEEecCh
Q 000971 398 LSDGQIVYQGPR 409 (1206)
Q Consensus 398 L~~G~iv~~G~~ 409 (1206)
|++|++++.|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=369.85 Aligned_cols=206 Identities=27% Similarity=0.372 Sum_probs=178.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCC------CCc-cceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE------FVP-ERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~------~~~-~~~~~yv~Q~d~~ 237 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. ..+ ++.++||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999997 9999999998754 333 4679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
+|.+||+||+.|+.+.++... .+....++.+++.+||++..+..+
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~- 137 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKP- 137 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCG-
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCCc-
Confidence 999999999999865432110 012234678899999998877655
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+ ++++.++|+..++..++|+|++
T Consensus 138 ----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 138 ----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEE
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999999998865444 4555678999999999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|++++.|+++++.
T Consensus 213 l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999999874
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=369.76 Aligned_cols=206 Identities=25% Similarity=0.361 Sum_probs=172.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+||.+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999997 9999999999876554 4679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|+.+.++... .+....++.+++.+||++..+..+ ..
T Consensus 101 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYP-----AQ 141 (372)
T ss_dssp HHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCT-----TT
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 999999754332110 012234678899999998877655 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865444 4555678999999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999999874
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=355.54 Aligned_cols=205 Identities=22% Similarity=0.314 Sum_probs=174.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCC----------CC------ccceE
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE----------FV------PERTA 228 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~----------~~------~~~~~ 228 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 46999999999999999999999999999999999999987 9999999998751 11 13569
Q ss_pred EEecCCCCCCCCCCHHHHHHHHh-hhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC
Q 000971 229 AYISQHDNHIGEMTVRETLAFSA-RCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1206)
Q Consensus 229 ~yv~Q~d~~~~~lTV~Etl~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1206)
+||+|++.+++.+||+||+.|+. ...+... .+....++.+++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSK----------------------------------HDARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCH----------------------------------HHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcC
Confidence 99999999999999999999964 3221100 011234677899999
Q ss_pred Cccc-ccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 000971 308 LEVC-ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386 (1206)
Q Consensus 308 L~~~-~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~ 386 (1206)
|.+. .+..++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..
T Consensus 142 L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~-g~tvi~vtHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMG 214 (262)
T ss_dssp CCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCCEEEECSCHH
T ss_pred CCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHH
Confidence 9887 776554 6999999999999999999999999999999999999999999999865 3 455566888889
Q ss_pred hHHhhcCeEEEEcCCeEEEecChHHHH
Q 000971 387 ETYDLFDDIILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 387 ~~~~~fD~vilL~~G~iv~~G~~~~~~ 413 (1206)
++..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999998774
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=366.23 Aligned_cols=201 Identities=25% Similarity=0.364 Sum_probs=176.5
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..++|.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999997 9999999999876544 367999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
|+.|+.+.++... . ..++.+++.+||++..+..+ ..||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~-----~~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNP-----LTLS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCG-----GGSC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 9999765332100 0 23567899999998877655 4699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~ 405 (1206)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|++++
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986543 4556668899999999999999999999999
Q ss_pred ecChHHHH
Q 000971 406 QGPRELVL 413 (1206)
Q Consensus 406 ~G~~~~~~ 413 (1206)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999874
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-39 Score=353.26 Aligned_cols=203 Identities=22% Similarity=0.347 Sum_probs=175.8
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||+++ .+|+||||+|++|+++||+|||||||||||++|+|... +. |+|.++|.+..
T Consensus 5 l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 5 MQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGG
T ss_pred EEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECC
Confidence 678888764 27999999999999999999999999999999999876 35 99999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
. ..+++.+||++|++.+++.+||+||+.|... .. .. ++.++++++.++|.+..++.+ ..|||||
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq 131 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRST-----NQLSGGE 131 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 2 2345679999999988889999999987521 11 11 345889999999998888764 5799999
Q ss_pred HHHHHHHHHHhhCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 986 RKRLTIAVELVANPS-------IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~-------iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
|||++|||||+.+|+ +|||||||+|||+.++..+++.|+++.++|+|||+++|+++ .+...+|++++|++ |
T Consensus 132 ~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G 209 (249)
T 2qi9_C 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-G 209 (249)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-T
T ss_pred HHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 999999999999999 99999999999999999999999999777999999999986 46688999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 210 ~i~~~g~~ 217 (249)
T 2qi9_C 210 KMLASGRR 217 (249)
T ss_dssp EEEEEEEH
T ss_pred EEEEeCCH
Confidence 89988875
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-39 Score=352.81 Aligned_cols=212 Identities=26% Similarity=0.425 Sum_probs=176.4
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+++++. +++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 46899999988730 124699999999999999999999999999999999998764 48999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------CCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-------GLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-------g~~ 976 (1206)
+.. ..+++.+|||+|++.+++ .||+||+.|.. + ... ++.++++++.+++.+..+..+ +.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~- 141 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE- 141 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-
Confidence 643 224567999999998876 69999998752 1 112 234778899999987666542 22
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
.+..|||||||||+|||||+.+|+||||||||+|||+.++..|++.|+++. +|+|||+++|+++. + +.||++++|++
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~ 218 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK 218 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 246899999999999999999999999999999999999999999999985 69999999999873 4 56999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 219 -G~i~~~g~~ 227 (247)
T 2ff7_A 219 -GKIVEQGKH 227 (247)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 789998874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=350.13 Aligned_cols=206 Identities=26% Similarity=0.299 Sum_probs=175.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC--ccceEEEecCCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999886421 1357999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.|.....+... .+....++.+++.+||++..+..++
T Consensus 105 v~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~----- 145 (256)
T 1vpl_A 105 GIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS----- 145 (256)
T ss_dssp HHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----
T ss_pred HHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-----
Confidence 9999998654322100 0112245678999999988776654
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.. . +++|+.++|...++..+||+|++|++|+
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998864 3 4556667888889999999999999999
Q ss_pred EEEecChHHHHH
Q 000971 403 IVYQGPRELVLE 414 (1206)
Q Consensus 403 iv~~G~~~~~~~ 414 (1206)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988754
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=367.93 Aligned_cols=204 Identities=21% Similarity=0.293 Sum_probs=176.9
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCC-----CCc-cceEEEecCCCCCCCC
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE-----FVP-ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~-----~~~-~~~~~yv~Q~d~~~~~ 240 (1206)
+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. ..+ ++.++||+|+..++|.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999997 9999999998754 222 4679999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.|+.+.++... .+....++.+++.+||++..+..+
T Consensus 97 ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~~~~---- 138 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFP---- 138 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG----
T ss_pred CCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCCh----
Confidence 999999999765432110 012234678899999998877655
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+ ++++.++|+..++..++|+|++|++
T Consensus 139 -~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 139 -RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp -GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 47999999999999999999999999999999999999999999999865444 4555588999999999999999999
Q ss_pred CeEEEecChHHHH
Q 000971 401 GQIVYQGPRELVL 413 (1206)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1206)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=353.09 Aligned_cols=216 Identities=25% Similarity=0.346 Sum_probs=174.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
+++|+|||+.|++|++++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999999865432 2469999999989999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.|+......+ .+. ..-. .. .... ..+....++.+++.+||++..+..++
T Consensus 97 ~tv~enl~~~~~~~~~~-~~~---~~~~----~~-~~~~------------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 152 (257)
T 1g6h_A 97 MTVLENLLIGEICPGES-PLN---SLFY----KK-WIPK------------EEEMVEKAFKILEFLKLSHLYDRKAG--- 152 (257)
T ss_dssp SBHHHHHHGGGTSTTSC-HHH---HHHH----CS-SCCC------------CHHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred CcHHHHHHHHHhhhccC-ccc---cccc----cc-ccCC------------HHHHHHHHHHHHHHcCCchhhCCCch---
Confidence 99999999864320000 000 0000 00 0000 00112346778999999988776654
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+||+|++|++
T Consensus 153 --~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 153 --ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999864 3 45566678888899999999999999
Q ss_pred CeEEEecChHH
Q 000971 401 GQIVYQGPREL 411 (1206)
Q Consensus 401 G~iv~~G~~~~ 411 (1206)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999999887
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=347.67 Aligned_cols=198 Identities=22% Similarity=0.284 Sum_probs=171.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||++.+. + .+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEh
Confidence 589999998763 3 699999999999999999999999999999999998764 489999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
. ..++.+|||+|++.+++.+||+||+.|....+.. .. + ++.++++++.++|.+. ++. +..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~---~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KV---N-KNEIMDALESVEVLDL-KKK-----LGELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CC---C-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-ch---H-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHH
Confidence 4 3466799999999999999999999987544321 11 1 3458899999999887 665 3579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
||+||+||+.+|++|||||||+|||+.++..+++.|+++.++|+|||+++|+++ ++...+|+++++.
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 999999999999999999999999999999999999999766899999999997 5677888888764
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=356.19 Aligned_cols=214 Identities=21% Similarity=0.297 Sum_probs=173.7
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++.. +.+.+|+||||+|++|+++||+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 48999999887410 114599999999999999999999999999999999998764 489999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHH-----HHHHHHHHHHHc--CCccccccccCCCC
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSET-----RKMFIEEVMELV--ELKPLIQSLVGLPG 977 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~-----~~~~v~~~l~~l--~L~~~~~~~~g~~~ 977 (1206)
.. ..+++.+|||+|++.+++ .||+||+.|..... ...+. ....++++++.+ +|....+..+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~---- 154 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGETG---- 154 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc----
Confidence 43 224567999999998887 59999998863211 11011 122356677777 6777666653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
..|||||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.+ .|+|||+++|+++ ....||++++|++
T Consensus 155 -~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 155 -NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp -TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999864 4899999999976 3456999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 232 -G~i~~~g~~ 240 (271)
T 2ixe_A 232 -GSVCEQGTH 240 (271)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 789998874
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=346.80 Aligned_cols=204 Identities=23% Similarity=0.347 Sum_probs=171.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999999875543 2359999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-CcccccccccCc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LEVCADTMVGDE 319 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (1206)
+||+||+.|+.... . .. .+....++.+++.++ |.+..+..+
T Consensus 96 ltv~enl~~~~~~~-~-~~---------------------------------~~~~~~~~~~l~~~~~l~~~~~~~~--- 137 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-K-DK---------------------------------EGIKRDLEWIFSLFPRLKERLKQLG--- 137 (240)
T ss_dssp SBHHHHHHGGGTTC-C-CS---------------------------------SHHHHHHHHHHHHCHHHHTTTTSBS---
T ss_pred CcHHHHHHHhhhcC-C-CH---------------------------------HHHHHHHHHHHHHcccHhhHhcCCh---
Confidence 99999999863111 0 00 001123556788884 877666554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ .+ ++|+.++|+..++..+||+|++|+
T Consensus 138 --~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g-~tvi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 138 --GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EG-TTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp --SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT-CCEEEEESCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999865 34 455557888888999999999999
Q ss_pred CCeEEEecChHHHH
Q 000971 400 DGQIVYQGPRELVL 413 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1206)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=345.23 Aligned_cols=201 Identities=22% Similarity=0.315 Sum_probs=171.9
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
+|+|||+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999987 9999999999865332 457999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
|+.|+....+. .. ....++.+++.+||.+..+..++ .||
T Consensus 90 nl~~~~~~~~~----------~~--------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VE--------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLS 128 (240)
T ss_dssp HHHTTCTTSCH----------HH--------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSC
T ss_pred HHHHHHHHcCC----------ch--------------------------HHHHHHHHHHHcCCHHHhcCChh-----hCC
Confidence 99986432210 00 01235678999999887776554 699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~ 405 (1206)
|||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+..+.| |+.++|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~t-vi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCC-EEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999886543444 5557888888999999999999999999
Q ss_pred ecChHHHH
Q 000971 406 QGPRELVL 413 (1206)
Q Consensus 406 ~G~~~~~~ 413 (1206)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998774
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-38 Score=353.60 Aligned_cols=208 Identities=25% Similarity=0.364 Sum_probs=166.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
..+|+|||+.|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 45999999999999999999999999999999999999997 9999999999987654 357999999988774 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+|||.|+..... .+...+..+ .+ .....+. .+....+|.+|+..
T Consensus 143 Tv~eNi~~~~~~~~----~~~~~~~~~------------------~~---------~l~~~i~--~lp~gl~t~~~~~g- 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----NDEVEAAAQ------------------AA---------GIHDAIM--AFPEGYRTQVGERG- 188 (306)
T ss_dssp EHHHHHHTTSTTCC----HHHHHHHHH------------------HH---------TCHHHHH--HSTTGGGCEESTTS-
T ss_pred cHHHHHHhhcccCC----HHHHHHHHH------------------Hh---------CcHHHHH--hccchhhhHhcCCc-
Confidence 99999998643111 000000000 00 0011111 23445678888654
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+|||||+.+|+||+|||||+|||+.+...|.+.|+++.. ++|+ +.++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tv-i~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTT-IVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEE-EEECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEE-EEEEcChHHHHc-CCEEEEEECC
Confidence 47999999999999999999999999999999999999999999998753 4554 457888877765 9999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
++++.|+++++.+
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=348.68 Aligned_cols=210 Identities=27% Similarity=0.423 Sum_probs=174.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++||++.++ +++.+|+|||++|++|+++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhh
Confidence 57889988762 123589999999999999999999999999999999998764 4799999998764
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------CCCCC
Q 000971 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-------GLPGV 978 (1206)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-------g~~~~ 978 (1206)
. ..+++.+|||+|++.+++ .||+||+.|... + ... ++.++++++.+++.+..+... +. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 234567999999998877 599999987521 1 112 234788999999988776542 22 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..|||||||||+|||||+.+|+||+|||||+|||+.++..+++.|+++. +|+|||+++|+++ .+ ..+|++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-C
Confidence 6899999999999999999999999999999999999999999999987 6999999999976 34 56999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 214 ~i~~~g~~ 221 (243)
T 1mv5_A 214 QITGSGKH 221 (243)
T ss_dssp EECCCSCH
T ss_pred EEEEeCCH
Confidence 88888774
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=344.13 Aligned_cols=206 Identities=18% Similarity=0.205 Sum_probs=173.1
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
+.++|++++++.. ...+.+|+|||++++ |+++||+|||||||||||++|+|.. +. +|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEEEECCEECc
Confidence 5788999887420 011469999999999 9999999999999999999999987 54 899999998754
Q ss_pred cccccceEE-EeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHHH
Q 000971 909 QETFARISG-YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 909 ~~~~~~~~g-yv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqr 986 (1206)
....++.+| |++|++.+ .+||+||+.|...++ ... ++.++++++.++|. +..++.+ ..||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 211145689 99999877 899999999875443 111 34588999999998 8887764 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcC-eEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD-ELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d-~v~ll~~gg~~~~~g~ 1065 (1206)
||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ |||++||++. .+...|| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998743 9999999987 4667899 9999985 78999887
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
.
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=345.20 Aligned_cols=205 Identities=26% Similarity=0.397 Sum_probs=172.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCC-CCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHD-NHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999987 999999999875432246799999985 56778999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc--ccccccccCccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE--VCADTMVGDEMI 321 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 321 (1206)
+||+.|+.... .. .. +....++.+++.+||. +..+..+
T Consensus 97 ~enl~~~~~~~-~~--------------------~~--------------~~~~~~~~~l~~~gl~~~~~~~~~~----- 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YP--------------------DR--------------DPVPLVKKAMEFVGLDFDSFKDRVP----- 136 (266)
T ss_dssp HHHHHHTTTTT-CT--------------------TS--------------CSHHHHHHHHHHTTCCHHHHTTCCG-----
T ss_pred HHHHHHHHHhc-CC--------------------HH--------------HHHHHHHHHHHHcCcCCcccccCCh-----
Confidence 99999864321 00 00 0112356789999998 7777655
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +.+|+.++|+..++..+||+|++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999998653 455666788888888999999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988754
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=343.18 Aligned_cols=211 Identities=24% Similarity=0.381 Sum_probs=172.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++.. ..+.+|+|||++|++|+++||+||||||||||+++|+|... + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 48999999887411 11359999999999999999999999999999999999875 3 79999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccc-------cccCCCC
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ-------SLVGLPG 977 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~~g~~~ 977 (1206)
.. ..+++.+|||+|++.+++ .||+||+.|+.. ... ++.+.++++.+++.+..+ +.++..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 224567999999998876 699999987521 111 234677888888765432 223322
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||+++|+++. + +.+|++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 468999999999999999999999999999999999999999999999864 8999999999873 4 56999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 789998874
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=342.98 Aligned_cols=209 Identities=28% Similarity=0.318 Sum_probs=168.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCC--CCCc---cceEEEecCCCCCC-
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG--EFVP---ERTAAYISQHDNHI- 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~--~~~~---~~~~~yv~Q~d~~~- 238 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. .... ++.++||+|++.++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 46999999999999999999999999999999999999997 999999998875 3322 35699999986532
Q ss_pred -CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 239 -GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 239 -~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
+.+||+||+.|+..... ..+.. + . .+....++.+++.+||++..+..++
T Consensus 111 ~~~ltv~enl~~~~~~~~--~~~~~--------------~--~------------~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI--GVYQD--------------I--D------------DEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------C--C------------HHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc--ccccC--------------C--c------------HHHHHHHHHHHHHcCChhHhcCChh
Confidence 35799999998532100 00000 0 0 0112346678999999988776654
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEE-EEEecCchhHHhhcCeEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV-ISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~v-i~i~q~~~~~~~~fD~vi 396 (1206)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++... +.|+. +.++|+..++..+||+|+
T Consensus 161 -----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 161 -----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEE
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEE
Confidence 69999999999999999999999999999999999999999999998654 55551 557888888899999999
Q ss_pred EEcCCeEEEecChHHH
Q 000971 397 LLSDGQIVYQGPRELV 412 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1206)
+|++|++++.|+++++
T Consensus 235 ~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 235 LLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEETTEEEEEEEHHHH
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999998876
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=334.84 Aligned_cols=200 Identities=26% Similarity=0.395 Sum_probs=161.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ +
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999987 9999999999876543 357999999988776 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccc-------cc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA-------DT 314 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-------dt 314 (1206)
||+||+.|+.. .. . . ..++.+++.+||.+.. ++
T Consensus 98 tv~enl~~~~~--~~-~-~------------------------------------~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP--GM-S-V------------------------------------EKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT--TC-C-H------------------------------------HHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC--CC-C-H------------------------------------HHHHHHHHHhChHHHHHhCcchhhh
Confidence 99999988521 00 0 0 0122344455554433 33
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.++. ....|||||||||+|||||+.+|++++|||||+|||+.+...+++.|+++. .+.| |+.++|....+. .||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~t-viivtH~~~~~~-~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTVK-NADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSE-EEEECSSGGGGT-TSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCE-EEEEeCCHHHHH-hCCE
Confidence 4443 356899999999999999999999999999999999999999999999873 3444 555677766664 5999
Q ss_pred EEEEcCCeEEEecChHHHH
Q 000971 395 IILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1206)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998774
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=336.73 Aligned_cols=205 Identities=23% Similarity=0.296 Sum_probs=163.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK--LDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~--l~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|. ++|+ +|+|.++|.++...... +.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4699999999999999999999999999999999998 6665 99999999998765432 3489999999999
Q ss_pred CCCCHHHHHHHHhhh-cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCC-cccccccc
Q 000971 239 GEMTVRETLAFSARC-QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-EVCADTMV 316 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 316 (1206)
+.+||+||+.|+... .+... . ..+....++.+++.+|| .+..+..+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~---------------------~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREV---------------------G-----------VAEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCC---------------------C-----------HHHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccC---------------------C-----------HHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999986431 11000 0 00112345678999999 47777655
Q ss_pred cCccccc-CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh-cCe
Q 000971 317 GDEMIRG-ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-FDD 394 (1206)
Q Consensus 317 g~~~~~~-LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~-fD~ 394 (1206)
+ . |||||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+ +|+
T Consensus 141 ~-----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~~d~ 213 (250)
T 2d2e_A 141 N-----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-P-NFGALVITHYQRILNYIQPDK 213 (250)
T ss_dssp T-----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-T-TCEEEEECSSSGGGGTSCCSE
T ss_pred c-----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCCE
Confidence 4 5 999999999999999999999999999999999999999999998743 3 45566678888888887 599
Q ss_pred EEEEcCCeEEEecChHH
Q 000971 395 IILLSDGQIVYQGPREL 411 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~ 411 (1206)
|++|++|++++.|+++.
T Consensus 214 v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 214 VHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEEETTEEEEEESHHH
T ss_pred EEEEECCEEEEEeCHHH
Confidence 99999999999999873
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=339.43 Aligned_cols=209 Identities=21% Similarity=0.354 Sum_probs=165.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 45899999999999999999999999999999999999987 9999999998865432 356999999988777 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc--CCcccccccccCc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLEVCADTMVGDE 319 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (1206)
||+|||.|+.... .. .+...+.. ....++.+++.+ ||+...+..
T Consensus 108 tv~enl~~~~~~~--~~-~~~~~~~~---------------------------~~~~~~~~l~~l~~gl~~~~~~~---- 153 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-MEEITAVA---------------------------MESGAHDFISGFPQGYDTEVGET---- 153 (271)
T ss_dssp BHHHHHHTTCSSC--CC-HHHHHHHH---------------------------HHHTCHHHHHHSTTGGGSBCCGG----
T ss_pred cHHHHHhhhcccC--Ch-HHHHHHHH---------------------------HHHhHHHHHHhhhcchhhhhcCC----
Confidence 9999999864211 00 00000000 011234567777 676555443
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.... +++|+.++|....+. .||+|++|+
T Consensus 154 -~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 154 -GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp -GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999875433 445555778877765 599999999
Q ss_pred CCeEEEecChHHHHH
Q 000971 400 DGQIVYQGPRELVLE 414 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1206)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=358.16 Aligned_cols=211 Identities=20% Similarity=0.283 Sum_probs=177.1
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+++|+. +...+|+||||+|++||+++|+|||||||||||++|+|... .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 35899999998741 23469999999999999999999999999999999999864 47999999988
Q ss_pred CCcc---cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCC------CC
Q 000971 907 KKQE---TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL------PG 977 (1206)
Q Consensus 907 ~~~~---~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~------~~ 977 (1206)
+... .+++.+|||+|++.+++ +||+||+.+.. ... ++.++++++.++|.+..++.+.. ..
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 6532 34577999999999887 69999996421 111 24578999999999888776431 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
...|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++. .|+|||+++|+++ ....+|++++|++
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~- 228 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE- 228 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-
Confidence 23499999999999999999999999999999999999999999999864 5899999999975 4567999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (390)
T 3gd7_A 229 NKVRQYDSI 237 (390)
T ss_dssp TEEEEESSH
T ss_pred CEEEEECCH
Confidence 799999985
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=333.49 Aligned_cols=197 Identities=24% Similarity=0.334 Sum_probs=168.8
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1206)
++|+|+|+.|++|++++|+|||||||||||++|+|.++| . |+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 479999999999999999999999999999999999987 3 999999998765432 356999999998899999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.|+.. ... . ...++.+++.+||++..+..+ .
T Consensus 90 v~e~l~~~~~-~~~-~-------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~ 125 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT-R-------------------------------------TELLNDVAGALALDDKLGRST-----N 125 (249)
T ss_dssp HHHHHHTTCS-STT-C-------------------------------------HHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred HHHHHHHhhc-cCC-c-------------------------------------HHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999987521 000 0 113466889999988777554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCc-------cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 323 GISGGERKRVTTGEMMVGPAL-------ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~-------vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
.|||||||||+||+||+.+|+ +|+|||||+|||+.++..+.+.|+++.+ . +.+|+.++|+..++..++|+|
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ-Q-GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 799999999999999999999 9999999999999999999999998864 3 455666888888888999999
Q ss_pred EEEcCCeEEEecChHHH
Q 000971 396 ILLSDGQIVYQGPRELV 412 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~ 412 (1206)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998876
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-36 Score=329.66 Aligned_cols=197 Identities=16% Similarity=0.227 Sum_probs=164.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
.++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 46999999999999999999999999999999999999987 999982 34699999999899999999
Q ss_pred HHHHHHhhhc-CCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 245 ETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 245 Etl~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
||+.|+.... +.... + . .+....++.+++.+||.+..+..+ ..
T Consensus 85 enl~~~~~~~~~~~~~-----------------~--~------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAK-----------------P--K------------SHDYQVAMQALDYLNLTHLAKREF-----TS 128 (253)
T ss_dssp HHHHGGGGGGSCTTCC-----------------C--C------------HHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHHHHhhhhhcccccC-----------------C--C------------HHHHHHHHHHHHHcCChHHhcCCh-----hh
Confidence 9999864321 10000 0 0 001234567899999998777654 46
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++..+||+|++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ-NMTVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 99999999999999999999999999999999999999999999886532 4556667888889999999999999999
Q ss_pred EEecChHHH
Q 000971 404 VYQGPRELV 412 (1206)
Q Consensus 404 v~~G~~~~~ 412 (1206)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998876
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=328.23 Aligned_cols=200 Identities=21% Similarity=0.343 Sum_probs=161.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.++. +++.+|+|||++|++|+++||+||||||||||+++|+|...+ .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC---
Confidence 4889999987741 124699999999999999999999999999999999998764 489999998
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------ccCCCCCCC
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS-------LVGLPGVSG 980 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~~g~~~~~~ 980 (1206)
.+||++|++.+++. ||+||+.|+.. ... ..++++++.+++.+..+. .++.. +..
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 28999999988875 99999987531 111 123455666666544332 22222 468
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
||||||||++|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||+++|+++ .+ ..+|++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 4899999999976 34 56999999986 78
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|+.
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998874
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=332.26 Aligned_cols=221 Identities=24% Similarity=0.297 Sum_probs=172.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHI 238 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l--~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1206)
+++|+|||+.|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++...... +.++|++|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 46999999999999999999999999999999999984 455 99999999988654331 3489999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-cccccccc
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVG 317 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (1206)
+.+||+|++.+..... .. .. . .+..+ ..+....++.+++.+||. +..+..++
T Consensus 110 ~~~tv~e~~~~~~~~~------------~~-~~--~-~~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAV------------RS-YR--G-QETLD-----------RFDFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHH------------HH-GG--G-CCCCC-----------HHHHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhh------------hh-hh--c-cccCC-----------HHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 9999999998753210 00 00 0 00000 001123467789999996 45555443
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh-cCeEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-FDDII 396 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~-fD~vi 396 (1206)
. .|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.. . +++|+.++|+..++..+ ||+|+
T Consensus 163 ~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 V----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-G-KRSFIIVTHYQRILDYIKPDYVH 236 (267)
T ss_dssp T----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-S-SCEEEEECSSGGGGGTSCCSEEE
T ss_pred c----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeeCHHHHHhhcCCEEE
Confidence 1 4999999999999999999999999999999999999999999998743 3 45566678888887776 89999
Q ss_pred EEcCCeEEEecChHHHHHHHHhcCCC
Q 000971 397 LLSDGQIVYQGPRELVLEFFESMGFK 422 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~ 422 (1206)
+|++|++++.|+++++.. ++..||.
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EEECCEEEEEcCHHHHhh-hhhcchh
Confidence 999999999999988753 4445443
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=329.24 Aligned_cols=199 Identities=22% Similarity=0.390 Sum_probs=158.6
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||++.+.. +++.+|+|||++|++|+++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 789999988741 12458999999999999999999999999999999999876 4589999998
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCCCCCCC
Q 000971 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLPGVSGL 981 (1206)
Q Consensus 909 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~~~~~L 981 (1206)
.+|||+|++.+ +.+||+||+.|.... ..+ ..+++++.+++.+.. +..++. .+..|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP----YYRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT----HHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH----HHHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 28999999864 578999999885321 111 123444444443211 111222 24689
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||+++|+++. + ..||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999985 343 58999999999874 4 57999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 205 ~i~~~g~~ 212 (237)
T 2cbz_A 205 KISEMGSY 212 (237)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 89998875
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=333.86 Aligned_cols=202 Identities=22% Similarity=0.333 Sum_probs=164.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 45899999999999999999999999999999999999987 9999999999865432 457999999988777 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccc------
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM------ 315 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~------ 315 (1206)
||+||+.|+... .. . ...++.+++.+||.+..+..
T Consensus 91 tv~enl~~~~~~-~~-~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG-DY-T-------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS-CS-C-------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC-CC-C-------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999875210 00 0 01134567777877655433
Q ss_pred -ccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 316 -VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 316 -vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
++ +.+..|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++. .+.| |+.++|....+ ..||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~t-vi~vtH~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRT-TLVIAHRLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSE-EEEECCSHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCE-EEEEeCChHHH-HhCCE
Confidence 33 3456899999999999999999999999999999999999999999999875 3444 55567776665 46999
Q ss_pred EEEEcCCeEEEecChHHHHH
Q 000971 395 IILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1206)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=330.29 Aligned_cols=194 Identities=20% Similarity=0.185 Sum_probs=165.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEE-EecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAA-YISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 243 (1206)
+++|+|+|+.++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 87 999999998875322245799 99998766 8999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccccCcccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGDEMIR 322 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (1206)
+||+.|...... . ....++.+++.+||. +..+..+ .
T Consensus 91 ~enl~~~~~~~~--~------------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--L------------------------------------DRDLFLEMLKALKLGEEILRRKL-----Y 127 (263)
T ss_dssp HHHHHHHHHHTC--C------------------------------------CHHHHHHHHHHTTCCGGGGGSBG-----G
T ss_pred HHHHHHhhhhcc--h------------------------------------HHHHHHHHHHHcCCChhHhcCCh-----h
Confidence 999998643210 0 012356788999998 7776554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcC-eEEEEcCC
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD-DIILLSDG 401 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD-~vilL~~G 401 (1206)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++. . +|+.++|+..++..+|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~--tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K--EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S--EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C--cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998753 2 56667888888899999 99999999
Q ss_pred eEEEecChHHHH
Q 000971 402 QIVYQGPRELVL 413 (1206)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1206)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-36 Score=368.91 Aligned_cols=213 Identities=24% Similarity=0.375 Sum_probs=177.2
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
+..++++||+++++. +...+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.+||.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCE
Confidence 346999999998852 124699999999999999999999999999999999998774 4899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccc-------cccCC
Q 000971 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ-------SLVGL 975 (1206)
Q Consensus 906 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~~g~ 975 (1206)
++.. ..+++.+|||+|++.+++. ||+||+.|+. + ..+ ++.+.++++..++.+..+ +.+|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 8654 2356679999999988875 9999998752 1 112 234677888888765443 33443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
. +.+||||||||++|||||+++|+||+|||||||||+.++..+++.|+++. +|+|+|+++|+++. .+.+|++++|+
T Consensus 474 ~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~ 549 (578)
T 4a82_A 474 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE 549 (578)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE
Confidence 3 35799999999999999999999999999999999999999999999885 58999999999874 45699999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 550 ~-G~i~~~g~~ 559 (578)
T 4a82_A 550 N-GHIVETGTH 559 (578)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 5 799999985
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=369.28 Aligned_cols=213 Identities=21% Similarity=0.306 Sum_probs=176.5
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
+..++++||+|+|+. +.+.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~ 405 (587)
T 3qf4_A 339 EGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDEL 405 (587)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSS
T ss_pred CCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCE
Confidence 346999999998852 124699999999999999999999999999999999998774 4899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCC
Q 000971 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGL 975 (1206)
Q Consensus 906 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~ 975 (1206)
++.. ..+++.+|||+|++.+++ .||+||+.|+.. ..+. +.++++++..++.+.. ++.+|.
T Consensus 406 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~ 475 (587)
T 3qf4_A 406 DVRTVKLKDLRGHISAVPQETVLFS-GTIKENLKWGRE-----DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVER 475 (587)
T ss_dssp BGGGBCHHHHHHHEEEECSSCCCCS-EEHHHHHTTTCS-----SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECS
T ss_pred EcccCCHHHHHhheEEECCCCcCcC-ccHHHHHhccCC-----CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcC
Confidence 8754 235677999999998886 499999987531 1122 2356677777765533 344454
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
. +.+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +|+|||+++|+++ ....+|++++|+
T Consensus 476 ~-~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~ 551 (587)
T 3qf4_A 476 G-GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLH 551 (587)
T ss_dssp S-SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEE
T ss_pred C-CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEE
Confidence 3 45899999999999999999999999999999999999999999999974 5899999999986 346899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 552 ~-G~i~~~g~~ 561 (587)
T 3qf4_A 552 E-GKVAGFGTH 561 (587)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 5 799999985
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=328.07 Aligned_cols=200 Identities=23% Similarity=0.330 Sum_probs=160.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.+++ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4589999999999999999999999999999999999864 7999999998865432 357999999988876 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc-------CCcccccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-------GLEVCADT 314 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 314 (1206)
||+||+.|+.. .. .. + .+..+++.+ ++++..+|
T Consensus 108 tv~enl~~~~~--~~-~~-~------------------------------------~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL--DA-TD-E------------------------------------EVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT--TC-CH-H------------------------------------HHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC--CC-CH-H------------------------------------HHHHHHHHhCCHHHHHhccccccc
Confidence 99999988521 00 00 0 011223333 34555667
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.++. .+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. .+. +|+.++|....+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~~-tviivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNR-TLIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TTS-EEEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCC-EEEEEcCCHHHH-HhCCE
Confidence 6664 456899999999999999999999999999999999999999999999874 244 455567776665 46999
Q ss_pred EEEEcCCeEEEecChHHHHH
Q 000971 395 IILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1206)
|++|++|++++.|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=368.09 Aligned_cols=213 Identities=23% Similarity=0.324 Sum_probs=178.6
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+++|+. +++.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEE
Confidence 46999999999851 114599999999999999999999999999999999998764 47999999987
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------cCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------~g~~ 976 (1206)
... ..+++.+|||+|++.+++ .||+||+.|+.. + +.+ ++.++++++.+++.+..+.+ +|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 643 345678999999998887 499999988531 1 122 34578899999998765544 3433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ |+|||+++|+++ ..+.+|++++|++
T Consensus 478 -~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~ 553 (582)
T 3b5x_A 478 -GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999864 999999999986 3457999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 554 -G~i~~~g~~ 562 (582)
T 3b5x_A 554 -GEIIERGRH 562 (582)
T ss_pred -CEEEEECCH
Confidence 799999874
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=366.09 Aligned_cols=213 Identities=23% Similarity=0.310 Sum_probs=178.4
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+++|+. +++.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEE
T ss_pred CcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEE
Confidence 35999999998741 113599999999999999999999999999999999998764 48999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------ccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS-------LVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~~g~~ 976 (1206)
+.. ..+++.+|||+|++.+++ .||+||+.|+.. + +.+ ++.++++++.+++.+..++ .+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 643 235667999999998887 499999998531 1 122 2347889999998765544 34443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ |+|||+++|+++. .+.||++++|++
T Consensus 478 -~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~ 553 (582)
T 3b60_A 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED 553 (582)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999865 9999999999873 457999999986
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 554 -G~i~~~g~~ 562 (582)
T 3b60_A 554 -GIIVERGTH 562 (582)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEecCH
Confidence 799999984
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=346.50 Aligned_cols=200 Identities=24% Similarity=0.234 Sum_probs=163.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
..+|+|||+.|++||+++|+|||||||||||++|+|+++ + +|+|.++|.++....+ ++.++||+|+..+|+ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 458999999999999999999999999999999999986 5 8999999999887654 367999999998887 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC---
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD--- 318 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~--- 318 (1206)
||+||+.+.... . ...++.+++.+||.+..+.....
T Consensus 109 tv~enl~~~~~~----~-------------------------------------~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAAH----S-------------------------------------DQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCCS----C-------------------------------------HHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhcccc----C-------------------------------------HHHHHHHHHHhCCHHHHhhccccccc
Confidence 999999642110 0 01234567788887665544331
Q ss_pred ---cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 319 ---EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 319 ---~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
+....|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++. .+ ++++.++|+. +....+|+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~-~tvi~vtHd~-e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--AD-CTVILCEARI-EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TT-SCEEEECSSS-GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CC-CEEEEEEcCH-HHHHhCCEE
Confidence 1223599999999999999999999999999999999999999999998752 23 4555567775 556779999
Q ss_pred EEEcCCeEEEecChHHHHH
Q 000971 396 ILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1206)
++|++|++++.|+++++.+
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998753
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=365.56 Aligned_cols=211 Identities=26% Similarity=0.372 Sum_probs=175.1
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++++||+|+|+. ++.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 353 ~~i~~~~v~~~y~~------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSSS------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEECCC------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEE
Confidence 46999999998741 23599999999999999999999999999999999998774 48999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------CCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-------GLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-------g~~ 976 (1206)
+.. ..+++.+|||+|++.+++ .||+||+.++.. ..+. +.++++++.+++.+..+.+. |..
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 654 335678999999998886 599999987521 1122 23667777777766554432 221
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+.+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +|+|||+++|+++. + +.+|++++|++
T Consensus 489 -g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 564 (598)
T 3qf4_B 489 -GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD 564 (598)
T ss_dssp -HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 25799999999999999999999999999999999999999999999985 59999999999973 4 56999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 565 -G~i~~~g~~ 573 (598)
T 3qf4_B 565 -GEIVEMGKH 573 (598)
T ss_dssp -SSEEECSCH
T ss_pred -CEEEEECCH
Confidence 799999985
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=317.81 Aligned_cols=188 Identities=18% Similarity=0.246 Sum_probs=155.1
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHH
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999987 999999999875 34567999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
|+.|+....+. . . + ...++.+++.+||++. +.. +..||
T Consensus 98 nl~~~~~~~~~-~--------------------~--------------~-~~~~~~~l~~~gl~~~-~~~-----~~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K--------------------V--------------N-KNEIMDALESVEVLDL-KKK-----LGELS 135 (214)
T ss_dssp HHHHHHHHTTC-C--------------------C--------------C-HHHHHHHHHHTTCCCT-TSB-----GGGSC
T ss_pred HHHHHHHhcCC-c--------------------h--------------H-HHHHHHHHHHcCCCcC-CCC-----hhhCC
Confidence 99987543210 0 0 0 1235667899999865 543 45799
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+ .+.| |+.++|...++..++|+|++ ..|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t-iiivtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGI-VIISSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSE-EEEEESSCCTTSSEEEEGGG-GBC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCE-EEEEeCCHHHHHHhCCEEEE-eCCcc
Confidence 9999999999999999999999999999999999999999998764 3444 55567777888888888764 44444
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=322.19 Aligned_cols=196 Identities=23% Similarity=0.333 Sum_probs=151.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 45899999999999999999999999999999999999987 99999998 4899999975 5689999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCc-ccccccccCccccc
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGDEMIRG 323 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~~ 323 (1206)
||+.|+.... ..+. .+.. + ...+++.+++. ...+|.++ +.+..
T Consensus 84 enl~~~~~~~--~~~~---~~~~------------------~------------~~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EPYY---RSVI------------------Q------------ACALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TTHH---HHHH------------------H------------HTTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HHHH---HHHH------------------H------------HHhhHHHHHhcccccccccc-CCCCC
Confidence 9999853211 0000 0000 0 00012223322 12334444 34568
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHH---HHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLK---QHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~---~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+ .+. . +++|+.++|....+ ..||+|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~-~~tviivtH~~~~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--K-NKTRILVTHSMSYL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--T-TSEEEEECSCSTTG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--C-CCEEEEEecChHHH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999884 322 2 44555567776665 57999999999
Q ss_pred CeEEEecChHHHHH
Q 000971 401 GQIVYQGPRELVLE 414 (1206)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1206)
|++++.|+++++.+
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999988753
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=317.09 Aligned_cols=196 Identities=20% Similarity=0.302 Sum_probs=150.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 46899999999999999999999999999999999999987 99999998 48999999988875 999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
||+.|+.... . ....+... .. .....++. +....+|.++. ....|
T Consensus 87 enl~~~~~~~----~-~~~~~~~~------------------~~---------~l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRSVIK------------------AC---------QLEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHHHHH------------------HT---------TCHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHHHHH------------------Hh---------CcHHHHHh--CcccccccccC-CCCcC
Confidence 9999853210 0 00000000 00 00111222 22233455553 35689
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC-LKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~-L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
||||||||+||+||+.+|++++|||||+|||+.+...+++. ++++. .+ ++|+.++|....+. .||+|++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~-~tvi~vtH~~~~~~-~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--AN-KTRILVTSKMEHLK-KADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TT-SEEEEECCCHHHHH-HCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CC-CEEEEEcCChHHHH-hCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999986 44442 24 45555677776664 5999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998774
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=356.74 Aligned_cols=208 Identities=23% Similarity=0.401 Sum_probs=166.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 45899999999999999999999999999999999999997 9999999999877654 3579999999888765
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.|+... ...+...+.++. .+ .+.. .-.+++..||.+|+.+
T Consensus 430 tv~eni~~~~~~----~~~~~~~~~~~~---------------------~~------~~~~--~~~lp~g~~t~~~~~g- 475 (578)
T 4a82_A 430 TVKENILLGRPT----ATDEEVVEAAKM---------------------AN------AHDF--IMNLPQGYDTEVGERG- 475 (578)
T ss_dssp BHHHHHGGGCSS----CCHHHHHHHHHH---------------------TT------CHHH--HHTSTTGGGCBCCGGG-
T ss_pred cHHHHHhcCCCC----CCHHHHHHHHHH---------------------hC------cHHH--HHhCcchhhhhhccCC-
Confidence 999999886321 000111111100 00 0011 2245667889999755
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++. .++|+|+ ++|..+.+ ..||+|++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~-~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLI-VAHRLSTI-THADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEE-ECSSGGGT-TTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HcCCEEEEEECC
Confidence 4799999999999999999999999999999999999999999998864 3455554 67777665 569999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=378.21 Aligned_cols=213 Identities=27% Similarity=0.399 Sum_probs=182.3
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..++|+||+|+|+.. +...+|+|||++|+||+++||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 414 g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~--~~G~I~idG~~ 481 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV--LKGKITIDGVD 481 (1321)
T ss_dssp CCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CcEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc--ccCcccCCCcc
Confidence 469999999998642 234699999999999999999999999999999999998774 58999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~ 976 (1206)
+.. ..+++.+|||+|++.++. -|++||+.|+. .+.+ ++.+.++++..++.+. .|+.+|..
T Consensus 482 i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 482 VRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDR 551 (1321)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSS
T ss_pred chhccHHHHhhcccccCCcceeeC-CchhHHHhhhc-----ccch----HHHHHHHHHHccchhHHHcCCCCCccEecCC
Confidence 754 346778999999998875 69999999863 1222 3458888888887554 45667765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
| .+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +|+|+|+++|+++ ....+|+|++|++
T Consensus 552 G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~ 627 (1321)
T 4f4c_A 552 G-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKN 627 (1321)
T ss_dssp S-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEET
T ss_pred C-CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeC
Confidence 5 4799999999999999999999999999999999999999999999876 5899999999987 4678999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 628 -G~ive~Gth 636 (1321)
T 4f4c_A 628 -GQVVEVGDH 636 (1321)
T ss_dssp -TEEEEEECH
T ss_pred -CeeeccCCH
Confidence 899999985
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=354.46 Aligned_cols=208 Identities=25% Similarity=0.368 Sum_probs=165.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 45899999999999999999999999999999999999997 9999999999877654 367999999998876 4
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.|+.... . .+...+..+. . ..+.. .-.|++..||.+|+..
T Consensus 432 tv~eni~~~~~~~---~-~~~~~~~~~~---~------------------------~~~~~--i~~l~~g~~~~~~~~~- 477 (587)
T 3qf4_A 432 TIKENLKWGREDA---T-DDEIVEAAKI---A------------------------QIHDF--IISLPEGYDSRVERGG- 477 (587)
T ss_dssp EHHHHHTTTCSSC---C-HHHHHHHHHH---T------------------------TCHHH--HHTSSSGGGCEECSSS-
T ss_pred cHHHHHhccCCCC---C-HHHHHHHHHH---h------------------------CcHHH--HHhcccchhhHhcCCC-
Confidence 9999998853210 0 0000000000 0 00111 2245667789998654
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+|||||+.+|+|++|||||++||+.+...+.+.|+++. .++|+ +.++|..+.+ ..||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tv-i~itH~l~~~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTT-FIITQKIPTA-LLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEE-EEEESCHHHH-TTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEE-EEEecChHHH-HhCCEEEEEECC
Confidence 4799999999999999999999999999999999999999999998863 34454 4466776655 589999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=352.24 Aligned_cols=202 Identities=23% Similarity=0.397 Sum_probs=164.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 45899999999999999999999999999999999999997 9999999999977543 357999999998887 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-------Ccccccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-------LEVCADT 314 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 314 (1206)
||+||+.|+.. ... . .+ .++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~~~-~-~~------------------------------------~~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-EEY-S-RE------------------------------------QIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-SCC-C-HH------------------------------------HHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-CCC-C-HH------------------------------------HHHHHHHHcCCHHHHHhccccccc
Confidence 99999998631 000 0 00 0112222233 3446688
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.+|+.. ..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++. .++|+|+ ++|....+ ..||+
T Consensus 473 ~~~~~~-~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRLSTI-EQADE 547 (582)
T ss_dssp BCCTTS-CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEE-ECSCGGGT-TTCSE
T ss_pred cccCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEE-EeccHHHH-HhCCE
Confidence 898654 5799999999999999999999999999999999999999999999874 3555555 66666554 57999
Q ss_pred EEEEcCCeEEEecChHHHHH
Q 000971 395 IILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1206)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=321.27 Aligned_cols=195 Identities=23% Similarity=0.378 Sum_probs=149.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.. +.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 47888888741 248999999999999999999999999999999999876 4689999998
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------cCCCCCCC
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLPGVSG 980 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------~g~~~~~~ 980 (1206)
.+||++|++.+++. ||+||+. +. . ... ..++++++.+++.+..+.. ++. .+..
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCc
Confidence 28999999988874 9999997 32 1 111 1245566667765543322 221 1357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
||||||||++|||||+.+|+||||||||+|||+.++..+++.+ +++. .|+|||+++|+++ .+ ..||++++|++ |+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~-G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999864 4553 4899999999975 34 56999999985 78
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|+.
T Consensus 236 i~~~g~~ 242 (290)
T 2bbs_A 236 SYFYGTF 242 (290)
T ss_dssp EEEEECH
T ss_pred EEEeCCH
Confidence 9998875
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=352.67 Aligned_cols=202 Identities=24% Similarity=0.385 Sum_probs=164.0
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 45899999999999999999999999999999999999997 9999999999876543 357999999998887 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-------Ccccccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-------LEVCADT 314 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 314 (1206)
||+||+.|+.. .. ...+ .++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~~--~~~~------------------------------------~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE-GE--YTRE------------------------------------QIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC-CC--CCHH------------------------------------HHHHHHHHCCCHHHHHhCcccccc
Confidence 99999998631 00 0000 0122223333 3445688
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.+|+.. ..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++. .++|+|+ ++|....+ ..||+
T Consensus 473 ~~~~~~-~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGENG-TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLV-IAHRLSTI-EQADE 547 (582)
T ss_pred hhcCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HhCCE
Confidence 888754 5799999999999999999999999999999999999999999999864 3555555 56665555 57999
Q ss_pred EEEEcCCeEEEecChHHHHH
Q 000971 395 IILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1206)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998753
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=354.43 Aligned_cols=208 Identities=25% Similarity=0.366 Sum_probs=165.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|+ .
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-T 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-c
Confidence 45899999999999999999999999999999999999998 9999999999877654 357999999987775 5
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.|+.... . .+...+ ++...+ .+..+ -.+++..||.+|+.+
T Consensus 444 tv~eni~~~~~~~---~-~~~~~~---------------------~~~~~~------~~~~~--~~~~~g~~t~~~~~g- 489 (598)
T 3qf4_B 444 TVKENLKYGNPGA---T-DEEIKE---------------------AAKLTH------SDHFI--KHLPEGYETVLTDNG- 489 (598)
T ss_dssp BHHHHHHSSSTTC---C-TTHHHH---------------------HTTTTT------CHHHH--HTSTTGGGCBCHHHH-
T ss_pred cHHHHHhcCCCCC---C-HHHHHH---------------------HHHHhC------CHHHH--HhccccccchhcCCC-
Confidence 9999999853210 0 000101 100000 01111 235566789998654
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+|||||+.+|++|+|||||++||+.+...+.+.|+++. .++|+|+ ++|....+ ..||+|++|++|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~-~~~d~i~~l~~G 565 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSII-IAHRLNTI-KNADLIIVLRDG 565 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEE-ESCCTTHH-HHCSEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HcCCEEEEEECC
Confidence 4799999999999999999999999999999999999999999999874 3555554 66666665 459999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-33 Score=312.52 Aligned_cols=194 Identities=21% Similarity=0.296 Sum_probs=146.8
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHH
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 5899999999999999999999999999999999999987 99999998 48999999888774 9999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
|+. +... .. ....+.. +.. ..+..++.+ ....++.++. ....||
T Consensus 118 nl~-~~~~----~~-~~~~~~~------------------~~~---------~l~~~l~~~--~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YRYRSVI------------------KAC---------QLEEDISKF--AEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HHHHHHH------------------HHT---------TCHHHHHTS--TTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HHHHHHH------------------HHh---------ChHHHHHhc--cccccchhcC-ccCcCC
Confidence 997 4211 00 0000000 000 001112222 2233455553 356899
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-KQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L-~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv 404 (1206)
|||||||+||+||+.+|++++|||||+|||+.++..+++.+ +++. .+ .+|+.++|....+ ..||+|++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~-~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--AN-KTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TT-SEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CC-CEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4432 24 4555577777666 469999999999999
Q ss_pred EecChHHHH
Q 000971 405 YQGPRELVL 413 (1206)
Q Consensus 405 ~~G~~~~~~ 413 (1206)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=367.82 Aligned_cols=214 Identities=26% Similarity=0.375 Sum_probs=176.7
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
...++|+||+++|+.. +...+|+|||++|+|||++||+||||||||||+++|+|...+ .+|+|.+||.
T Consensus 385 ~g~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~--~~G~i~i~g~ 452 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDGQ 452 (1284)
T ss_dssp CCCEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCE
Confidence 3469999999988521 124699999999999999999999999999999999998774 4899999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccCC
Q 000971 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGL 975 (1206)
Q Consensus 906 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~ 975 (1206)
++.. ..+++.+|||+|++.+++. ||+||+.|+.. +.+. +.++++++..++.+. .++.+|.
T Consensus 453 ~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 522 (1284)
T 3g5u_A 453 DIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTM----DEIEKAVKEANAYDFIMKLPHQFDTLVGE 522 (1284)
T ss_dssp EGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCH----HHHHHHHHHTTCHHHHHHSTTGGGCCCSS
T ss_pred EHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhccccccccccC
Confidence 7643 3456679999999998875 99999998631 1222 346667777666543 3455555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
. +.+||||||||++|||||+++|+||+||||||+||+.++..+++.++++. +|+|||+++|+++ ....+|+|++|+
T Consensus 523 ~-g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl~ 598 (1284)
T 3g5u_A 523 R-GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGFD 598 (1284)
T ss_dssp S-SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEECS
T ss_pred C-CCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEE
Confidence 4 35799999999999999999999999999999999999999999998875 5999999999986 345699999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |++++.|+.
T Consensus 599 ~-G~i~~~g~~ 608 (1284)
T 3g5u_A 599 G-GVIVEQGNH 608 (1284)
T ss_dssp S-SCCCCEECH
T ss_pred C-CEEEEECCH
Confidence 5 799999985
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=313.48 Aligned_cols=191 Identities=26% Similarity=0.292 Sum_probs=160.1
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 246 (1206)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577778889999999999999999999999999999987 899876 2369999999877788999998
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCCh
Q 000971 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326 (1206)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1206)
+.+.... .+ . ....++.+++.+||.+.++..++ .|||
T Consensus 438 ~~~~~~~-----~~------~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 474 (607)
T 3bk7_A 438 LSKIDSS-----KL------N---------------------------SNFYKTELLKPLGIIDLYDRNVE-----DLSG 474 (607)
T ss_dssp HHHHHHH-----HH------H---------------------------CHHHHHHTHHHHTCTTTTTSBGG-----GCCH
T ss_pred HHhhhcc-----CC------C---------------------------HHHHHHHHHHHcCCchHhcCChh-----hCCH
Confidence 8653110 00 0 01235667899999887776654 6999
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC--CeEE
Q 000971 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1206)
Q Consensus 327 GqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~--G~iv 404 (1206)
||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++..+ .+|+.++|+..++..++|+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 999999999999999999999999999999999999999999865444 5556688999999999999999986 8889
Q ss_pred EecChHHHHH
Q 000971 405 YQGPRELVLE 414 (1206)
Q Consensus 405 ~~G~~~~~~~ 414 (1206)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=310.08 Aligned_cols=191 Identities=26% Similarity=0.295 Sum_probs=158.5
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 246 (1206)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 467777778999999999999999999999999999987 899875 2369999999877788999998
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCCh
Q 000971 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326 (1206)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1206)
+....... .. ....++.+++.+||.+..+..++ .|||
T Consensus 368 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----------LN---------------------------SNFYKTELLKPLGIIDLYDREVN-----ELSG 404 (538)
T ss_dssp HHHHHHHH-----------HT---------------------------CHHHHHHTTTTTTCGGGTTSBGG-----GCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCChhhhcCChh-----hCCH
Confidence 76431100 00 01234567888999877766554 6999
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC--CeEE
Q 000971 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1206)
Q Consensus 327 GqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~--G~iv 404 (1206)
||||||+||++|+.+|++|+|||||+|||..+...+.+.|++++...+ .+|+.++|+.+++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 999999999999999999999999999999999999999999865444 4556688999999999999999986 7899
Q ss_pred EecChHHHHH
Q 000971 405 YQGPRELVLE 414 (1206)
Q Consensus 405 ~~G~~~~~~~ 414 (1206)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-29 Score=316.98 Aligned_cols=193 Identities=21% Similarity=0.270 Sum_probs=158.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+...|+++.+. ++.+|+||||++++|+++||+|||||||||||++|+| |.| +|.+.
T Consensus 435 ~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 466678888773 3579999999999999999999999999999999995 222 44443
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccccCCCCCCCCCHHH
Q 000971 908 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGq 985 (1206)
.. ...++|++|+. .+++.+||.|++.+ ... .. +++++++++.+||. +..++.+ ..|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHH
Confidence 21 12368999874 66788999999976 111 11 35688999999995 6677764 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEE-EEc
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YVG 1064 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~-~~g 1064 (1206)
|||++||++|+.+|+||||||||+|||+.+...+++.|++ .|.|||+++|++. .+...+|++++|++ |+++ |.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCC
Confidence 9999999999999999999999999999999999999987 5899999999986 57788999999986 6775 788
Q ss_pred CC
Q 000971 1065 PL 1066 (1206)
Q Consensus 1065 ~~ 1066 (1206)
+.
T Consensus 629 ~~ 630 (986)
T 2iw3_A 629 NF 630 (986)
T ss_dssp CH
T ss_pred CH
Confidence 75
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-29 Score=304.49 Aligned_cols=192 Identities=20% Similarity=0.212 Sum_probs=157.9
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 246 (1206)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++| +.++|++|+....+.+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466677889999999999999999999999999999997 99998765 358999998766778999999
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCCh
Q 000971 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326 (1206)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1206)
+.+..... . . . ....++.+++.+||.+..+..++ .|||
T Consensus 351 l~~~~~~~-~-~------------------~-----------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 388 (538)
T 3ozx_A 351 LENASKDA-L-S------------------T-----------------SSWFFEEVTKRLNLHRLLESNVN-----DLSG 388 (538)
T ss_dssp HHHHCSST-T-C------------------T-----------------TSHHHHHTTTTTTGGGCTTSBGG-----GCCH
T ss_pred HHHhhhhc-c-c------------------h-----------------hHHHHHHHHHHcCCHHHhcCChh-----hCCH
Confidence 98742100 0 0 0 01124567888999887776554 6999
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC--CeEE
Q 000971 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1206)
Q Consensus 327 GqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~--G~iv 404 (1206)
||||||+||++|+.+|+||+|||||+|||+.+...+.+.|+++++. .+++|+.++|+.+++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~-~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE-RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999998764 355666689999999999999999986 6677
Q ss_pred EecChHHHH
Q 000971 405 YQGPRELVL 413 (1206)
Q Consensus 405 ~~G~~~~~~ 413 (1206)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-29 Score=303.95 Aligned_cols=192 Identities=23% Similarity=0.246 Sum_probs=158.5
Q ss_pred eEeeceeeeEeCC-----eEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCC
Q 000971 166 TILKDVSGIIKPG-----RMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1206)
Q Consensus 166 ~iL~~vs~~i~~G-----~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1206)
.+++|+|+.+++| |+++|+|||||||||||++|+|.++|+ +|+. + .+..++|++|+......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccCC
Confidence 5789999999999 779999999999999999999999987 7752 1 23468999998766667
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
.||+|++....+ +. . . ....++.+++.+||.+.++..++
T Consensus 428 ~tv~e~~~~~~~--~~---~------------------~---------------~~~~~~~~l~~l~l~~~~~~~~~--- 466 (608)
T 3j16_B 428 GTVRQLFFKKIR--GQ---F------------------L---------------NPQFQTDVVKPLRIDDIIDQEVQ--- 466 (608)
T ss_dssp SBHHHHHHHHCS--ST---T------------------T---------------SHHHHHHTHHHHTSTTTSSSBSS---
T ss_pred ccHHHHHHHHhh--cc---c------------------c---------------cHHHHHHHHHHcCChhhhcCChh---
Confidence 899998754211 10 0 0 01124567899999987776554
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.|||||||||+||++|+.+|+||+|||||+|||+.+...+++.|++++...+ .+|+.++|+.+++..++|+|++|++
T Consensus 467 --~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g-~tviivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 467 --HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK-KTAFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp --SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEECEE
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 6999999999999999999999999999999999999999999999865444 4556689999999999999999986
Q ss_pred --CeEEEecChHHHHH
Q 000971 401 --GQIVYQGPRELVLE 414 (1206)
Q Consensus 401 --G~iv~~G~~~~~~~ 414 (1206)
|+++..|++++++.
T Consensus 544 ~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 544 IPSKNAHARAPESLLT 559 (608)
T ss_dssp ETTTEEECCCCEEHHH
T ss_pred CCCeEEecCChHHHhh
Confidence 99999999988765
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=315.63 Aligned_cols=205 Identities=21% Similarity=0.292 Sum_probs=134.5
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHH---------------------hhhcCCCCCC--ee---EEEEEEcCccC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLSGRKTGG--YI---TGNITISGYPK 907 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl---------------------~~L~g~~~~~--~~---~G~i~i~g~~~ 907 (1206)
..+|+||||+|++||++||+||||||||||+ +++.|...++ .+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999997 5555543321 12 35677777654
Q ss_pred CcccccceEEEeecCCC-------------------CCCCCCHHHHHHHhhhhcCCCCCCHHHHHH------HHHHHHHH
Q 000971 908 KQETFARISGYCEQNDI-------------------HSPFVTVYESLLYSAWLRLPPEVDSETRKM------FIEEVMEL 962 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~-------------------~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~------~v~~~l~~ 962 (1206)
... .++.+||++|... .++.+||+||+.+...+..... ..+.... ...++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 1233455554332 2356899999987433221110 0000000 11235888
Q ss_pred cCCccc-cccccCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000971 963 VELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1039 (1206)
Q Consensus 963 l~L~~~-~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~--iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1039 (1206)
+||.+. .++.+ ..|||||||||+|||||+.+|+ ||||||||+|||+.+...+++.|++++++|.|||+++|+
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999865 56664 4799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CchHHHHhcCeEEEEe-----cCcEEEEEcCCC
Q 000971 1040 PGIDIFDAFDELFLMK-----RGGQEIYVGPLG 1067 (1206)
Q Consensus 1040 p~~~i~~~~d~v~ll~-----~gg~~~~~g~~~ 1067 (1206)
++ ....+|++++|. ++|++++.|+..
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 75 456799999993 358999999863
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-29 Score=307.63 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=116.1
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhh
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAW 940 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~ 940 (1206)
++.+.+|++++|+||||||||||++.++|...+ .|+ +.+.|++|++. ..+.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 569999999999999999999999999985331 121 12455666531 12222221
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH-----H
Q 000971 941 LRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1015 (1206)
Q Consensus 941 lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~-----~ 1015 (1206)
+.. .+ +++ +...|+..+.+.. +..||+||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -HcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 111 12 122 2345666555544 3579999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCc---------hHHHHhcCeEEEEecC
Q 000971 1016 AAIVMRTVRNTVDTGRTVVCTIHQPG---------IDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1016 ~~~i~~~l~~~~~~g~tvi~~~H~p~---------~~i~~~~d~v~ll~~g 1057 (1206)
+..+.++++.+++.|.|||+++|++. ..+...+|++++|..|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEE
Confidence 99999999999888999999999981 2456789999999864
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=267.49 Aligned_cols=109 Identities=26% Similarity=0.300 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 000971 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLKQHVHINS 374 (1206)
Q Consensus 298 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~---~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~ 374 (1206)
.+..+|+.+||... .+| +....|||||||||.||++|+.+| ++|+|||||+|||+.+...+++.|+++.. .+
T Consensus 784 ~~~~~L~~vGL~~~---~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G 858 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RG 858 (916)
T ss_dssp HHHHHHHHTTGGGS---BTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcCCchh---hcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 35578899999742 222 345589999999999999999765 79999999999999999999999999864 34
Q ss_pred CeEEEEEecCchhHHhhcCeEEEE------cCCeEEEecChHHHH
Q 000971 375 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1206)
Q Consensus 375 ~t~vi~i~q~~~~~~~~fD~vilL------~~G~iv~~G~~~~~~ 413 (1206)
. +|+.+.|+...+ ..+|+|++| ++|+|++.|+++++.
T Consensus 859 ~-TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 859 N-TVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp C-EEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred C-EEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 4 555688888765 559999999 899999999999885
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-24 Score=255.53 Aligned_cols=203 Identities=18% Similarity=0.144 Sum_probs=140.7
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCC------------------------------------CeeEE
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG------------------------------------GYITG 898 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~------------------------------------~~~~G 898 (1206)
.+++++|+.+.+| +++|+|||||||||||++|.+...+ ..-.|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 9999999999999999999543210 01157
Q ss_pred EEEEcCccCCccc----ccceEEEeecCCCCCCCCCHHHHHHHhhhhc-----------------------CCCCCC---
Q 000971 899 NITISGYPKKQET----FARISGYCEQNDIHSPFVTVYESLLYSAWLR-----------------------LPPEVD--- 948 (1206)
Q Consensus 899 ~i~i~g~~~~~~~----~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr-----------------------~~~~~~--- 948 (1206)
.+.+||.+..... ....+++++|++.+... +..+...|--... ......
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999998875422 22347999998766432 4444433321110 000000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCcccc----------------cc---ccCC---
Q 000971 949 -------------------------------SETRKMFIEEVMELVELKPLI----------------QS---LVGL--- 975 (1206)
Q Consensus 949 -------------------------------~~~~~~~v~~~l~~l~L~~~~----------------~~---~~g~--- 975 (1206)
.+.....+.+.++.+++.... +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 001123455566666664310 00 1111
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcC
Q 000971 976 ---PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD 1049 (1206)
Q Consensus 976 ---~~~~~-LSgGqrqrl~ia~aL~~~P--~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d 1049 (1206)
..++. ||||||||++||++|+.+| +||||||||+|||+.+...|.+.|++++ +|+|||+|||+|. +...+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 00112 6999999999999999999 9999999999999999999999999997 5999999999974 568899
Q ss_pred eEEEE----ecCcEEEEE
Q 000971 1050 ELFLM----KRGGQEIYV 1063 (1206)
Q Consensus 1050 ~v~ll----~~gg~~~~~ 1063 (1206)
++++| .+ |+++..
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 64 565543
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-24 Score=268.98 Aligned_cols=107 Identities=28% Similarity=0.301 Sum_probs=90.5
Q ss_pred HHHHHHHcCCcc-cccccccCcccccCChhhhhHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 000971 299 TDYYLKVLGLEV-CADTMVGDEMIRGISGGERKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLKQHVHINS 374 (1206)
Q Consensus 299 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~---~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~ 374 (1206)
...+|+.+||.. ..+.. +..|||||||||+||++|+.+| ++|+|||||+|||+.+...+++.|++++. .
T Consensus 825 ~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~- 897 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-N- 897 (972)
T ss_dssp HHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-
Confidence 356789999986 44444 4479999999999999999764 99999999999999999999999999864 3
Q ss_pred CeEEEEEecCchhHHhhcCeEEEE------cCCeEEEecChHHHH
Q 000971 375 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1206)
Q Consensus 375 ~t~vi~i~q~~~~~~~~fD~vilL------~~G~iv~~G~~~~~~ 413 (1206)
+.+|+.++|+.+++ ..+|+|++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 45566688888775 689999999 789999999999875
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-26 Score=277.26 Aligned_cols=196 Identities=14% Similarity=0.071 Sum_probs=149.3
Q ss_pred ecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEE-E-EEEcCccCCcccccceEEEeecCCC---CCCCCCHH
Q 000971 858 NGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITG-N-ITISGYPKKQETFARISGYCEQNDI---HSPFVTVY 932 (1206)
Q Consensus 858 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~q~~~---~~~~~Tv~ 932 (1206)
.++|+.+++|++++|+||||||||||+++|+|... +..| + |.+||.+ ++.++|++|+.. +.+.+||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~~------~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLDP------QQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECCT------TSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCCc------cCCeeeeccchhhcccccccchh
Confidence 47999999999999999999999999999999865 3468 8 9999832 456899999874 45567999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHH--HhhCCcE----EEEeC
Q 000971 933 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMDE 1006 (1206)
Q Consensus 933 e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~a--L~~~P~i----L~LDE 1006 (1206)
||+ |+....... .. ++.+.++++.+|+.+..+ ...|||||||||+|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 654321111 00 123556778888887665 24799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--h---HHHHhcCe-----EEEEecCcEEEEEcCCCcc----hh
Q 000971 1007 -PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPG--I---DIFDAFDE-----LFLMKRGGQEIYVGPLGRH----SC 1071 (1206)
Q Consensus 1007 -PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~--~---~i~~~~d~-----v~ll~~gg~~~~~g~~~~~----~~ 1071 (1206)
||++||+. ...+.+.+++ .|.|+|+++|+++ . .+..++|+ +++|.+.|+++ .|+.... ..
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~ 342 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRT 342 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHH
Confidence 99999999 5555555554 3789999999987 3 34578999 99998446677 7775321 12
Q ss_pred HHHHHHHh
Q 000971 1072 QLISYFEA 1079 (1206)
Q Consensus 1072 ~~~~yf~~ 1079 (1206)
.+.+||..
T Consensus 343 ~i~~~f~g 350 (460)
T 2npi_A 343 SIREYFYG 350 (460)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 34567764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-24 Score=266.17 Aligned_cols=108 Identities=22% Similarity=0.267 Sum_probs=92.6
Q ss_pred HHHHHHHHcCCccc-ccccccCcccccCChhhhhHHHHHHHHhcC---CccceeecCCCCCCHHHHHHHHHHHHHHHHhc
Q 000971 298 ITDYYLKVLGLEVC-ADTMVGDEMIRGISGGERKRVTTGEMMVGP---ALALFMDEISTGLDSSTTFQIVNCLKQHVHIN 373 (1206)
Q Consensus 298 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkkRvsia~~l~~~---~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~ 373 (1206)
.+..+|+.+||... .+. .+..|||||||||.||++|+.+ |+||+|||||+|||..+...+.+.|++++. .
T Consensus 709 ~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 45778999999863 333 3457999999999999999996 799999999999999999999999999864 3
Q ss_pred CCeEEEEEecCchhHHhhcCeEEEE------cCCeEEEecChHHHH
Q 000971 374 SGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1206)
Q Consensus 374 ~~t~vi~i~q~~~~~~~~fD~vilL------~~G~iv~~G~~~~~~ 413 (1206)
+.+|+.++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 45566688888888 889999999 799999999999874
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-26 Score=270.89 Aligned_cols=185 Identities=10% Similarity=0.043 Sum_probs=142.4
Q ss_pred eceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCeeCCCCCccceEEEecCCCC---CCCCCCH
Q 000971 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSG-R-VTYNGHDMGEFVPERTAAYISQHDN---HIGEMTV 243 (1206)
Q Consensus 169 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G-~-I~~nG~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 243 (1206)
.++|+.+++|++++|+||||||||||+|+|+|.+.++ +| + |.++|. +++.++|++|+.. +.+.+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999876 89 8 999982 3567899999873 4566899
Q ss_pred HHHHHHHhhhc-CCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 244 RETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 244 ~Etl~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
+||+ |+.... +... .+ .+..+++.+||++..+ ..
T Consensus 200 ~eni-~~~~~~~~~~~----------~~---------------------------~~~~ll~~~gl~~~~~-------~~ 234 (460)
T 2npi_A 200 QLPT-WGQSLTSGATL----------LH---------------------------NKQPMVKNFGLERINE-------NK 234 (460)
T ss_dssp TCTT-CSCBCBSSCCS----------SC---------------------------CBCCEECCCCSSSGGG-------CH
T ss_pred hhhh-cccccccCcch----------HH---------------------------HHHHHHHHhCCCcccc-------hh
Confidence 9998 754321 1000 00 0122456778876554 34
Q ss_pred cCChhhhhHHHHHHH--HhcCCcc----ceeec-CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCch-----hHHh
Q 000971 323 GISGGERKRVTTGEM--MVGPALA----LFMDE-ISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP-----ETYD 390 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~--l~~~~~v----lllDE-ptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~-----~~~~ 390 (1206)
.|||||||||++|++ |+.+|++ ++||| ||++||.. ...+.+.+++ .+.++|+++|++.+ ++.+
T Consensus 235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~ 309 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKT 309 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHH
Confidence 799999999999999 9999999 99999 99999999 4444445443 35566665555431 5668
Q ss_pred hcCe-----EEEEc-CCeEEEecChHHHH
Q 000971 391 LFDD-----IILLS-DGQIVYQGPRELVL 413 (1206)
Q Consensus 391 ~fD~-----vilL~-~G~iv~~G~~~~~~ 413 (1206)
++|+ |++|+ +|+++ .|+++++.
T Consensus 310 ~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 310 FGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred hcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 9999 99999 99999 99987663
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=242.26 Aligned_cols=236 Identities=15% Similarity=0.136 Sum_probs=148.2
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC-----------------------------------CCce
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS-----------------------------------LKVS 209 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~-----------------------------------~~~~ 209 (1206)
..+|+++++.+.+| +++|+|||||||||||++|.+.+... ..-.
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 99999999999999999997776421 0126
Q ss_pred eEEEECCeeCCCCCcc----ceEEEecCCCCCCCCCCHHHHHHHHhhhcCC-----CchhhHhHHHHHHhhhcCCCCCC-
Q 000971 210 GRVTYNGHDMGEFVPE----RTAAYISQHDNHIGEMTVRETLAFSARCQGV-----GSRYELLTELARRENEAGIKPDP- 279 (1206)
Q Consensus 210 G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~-----~~~~~~~~~~~~~~~~~~i~p~~- 279 (1206)
|++.+||.+++..... ..+++++|++.++. .+..+...|--..... ...+....+..+..... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Confidence 8899999987642221 24899999876554 3666655553221100 00011111110000000 00000
Q ss_pred ----------ChHHHHHHHh-----------hhhhhHHHHHHHHHHHcCCccccc----------c---------cccC-
Q 000971 280 ----------DIDVYMKAIA-----------TEGQEANVITDYYLKVLGLEVCAD----------T---------MVGD- 318 (1206)
Q Consensus 280 ----------d~~~~~~~~~-----------~~~~~~~~~~~~~l~~lgL~~~~d----------t---------~vg~- 318 (1206)
.++...+... .........+...++.++++...- + .+..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 0010000000 111222334566677777754110 0 1111
Q ss_pred -----ccccc-CChhhhhHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHh
Q 000971 319 -----EMIRG-ISGGERKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD 390 (1206)
Q Consensus 319 -----~~~~~-LSGGqkkRvsia~~l~~~~--~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1206)
..++. +||||||||+||++|+.+| ++|+|||||+|||+.+...+.+.|+++. .+.++| .++|.. ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi-~itH~~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVL-VVTHLA-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEE-EECSCH-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEE-EEeCcH-HHHh
Confidence 12222 6999999999999999999 9999999999999999999999999875 344554 466765 5678
Q ss_pred hcCeEEEE----cCCeEEEec
Q 000971 391 LFDDIILL----SDGQIVYQG 407 (1206)
Q Consensus 391 ~fD~vilL----~~G~iv~~G 407 (1206)
.||++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987653
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-22 Score=231.58 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=74.4
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeE
Q 000971 978 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~------~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+++|++. ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999975 47789999
Q ss_pred EEEecCcEEEE
Q 000971 1052 FLMKRGGQEIY 1062 (1206)
Q Consensus 1052 ~ll~~gg~~~~ 1062 (1206)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99986 67653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-25 Score=236.23 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=97.7
Q ss_pred ceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000971 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVY 932 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~ 932 (1206)
.+.+|+|| ++|+++||+||||||||||+++|+|. .+ .+|+|............++.+||++|++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 34689985 89999999999999999999999997 52 2444421100001112356789999975 4
Q ss_pred HHH-HHhh----hhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000971 933 ESL-LYSA----WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1007 (1206)
Q Consensus 933 e~l-~~~a----~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEP 1007 (1206)
||+ .+.. .+... .. .+.++++++. + | |||||++|||||+.+|+|||||||
T Consensus 77 enl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDM--VE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp ---CTTTHHHHHHHTTT--SC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred HHHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCC
Confidence 444 2211 11100 01 1235555553 2 2 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000971 1008 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 1008 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
|+| ++..+++.|+++ ++|+||| ++|+++
T Consensus 132 ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 132 QNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred ccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 999 888899999988 6699999 999975
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-23 Score=215.09 Aligned_cols=143 Identities=14% Similarity=0.198 Sum_probs=101.7
Q ss_pred cceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCC-CCCHHHHHHH
Q 000971 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP-FVTVYESLLY 937 (1206)
Q Consensus 859 ~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~-~~Tv~e~l~~ 937 (1206)
||||++++||+++|+||||||||||++++.+-.. .+++ . ...|+++|++.... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 1 11266777542110 001112111
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH---
Q 000971 938 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1014 (1206)
Q Consensus 938 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~--- 1014 (1206)
. ..+.....+.....+.. ...|+|||||++||++|+.+|++|+|||||++||+.
T Consensus 64 ----------------~-~~~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------Y-IVSKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------H-HHHHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------H-HHHHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1 11222234555444433 246999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000971 1015 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 1015 -------------~~~~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
....+++.|+++.++|.|||+++|+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 568899999888777999999999975
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.1e-22 Score=226.17 Aligned_cols=87 Identities=21% Similarity=0.212 Sum_probs=75.5
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeE--
Q 000971 978 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL-- 1051 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~----~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v-- 1051 (1206)
+..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. +|.|||+|+|++. +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3579999999999999997 6889999999999999999999999999984 5899999999964 57889987
Q ss_pred EEEecCcEEEEEcCCC
Q 000971 1052 FLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1052 ~ll~~gg~~~~~g~~~ 1067 (1206)
++|.+|...+....+.
T Consensus 294 v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEESSSCEEEEECCC-
T ss_pred EEEeCCEEEEEEEEcc
Confidence 8888777777766653
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-20 Score=217.71 Aligned_cols=84 Identities=26% Similarity=0.377 Sum_probs=72.1
Q ss_pred cccccCChhhhhHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhc
Q 000971 319 EMIRGISGGERKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~------~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~f 392 (1206)
..+..|||||||||+||++|+ .+|++|||||||+|||+.+...+++.|+++.. .+. +|+.++|.... ...+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~-tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNK-VIVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSS-EEEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCC-EEEEEecchHH-HHhC
Confidence 456689999999999999999 79999999999999999999999999998754 344 45557777765 7889
Q ss_pred CeEEEEcCCeEEE
Q 000971 393 DDIILLSDGQIVY 405 (1206)
Q Consensus 393 D~vilL~~G~iv~ 405 (1206)
|+|++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999874
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-23 Score=241.55 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=138.9
Q ss_pred eEEeecceeeeeCCe--------------------EEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCccccc
Q 000971 854 LVLLNGLSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFA 913 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~--------------------~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~ 913 (1206)
+.+|++||+.+++|+ ++||+||||||||||+|+|+|...+ .+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc-----
Confidence 358999999999999 9999999999999999999997664 3688888886542
Q ss_pred ceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH--HHHHHHH
Q 000971 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE--QRKRLTI 991 (1206)
Q Consensus 914 ~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG--qrqrl~i 991 (1206)
+ .+|++|++ .++.+|+.|++.+.. + +..++++++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899985 567889998875542 1 12368899999988753332 28999 9999999
Q ss_pred HHHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEecCCch-HHHHhcCeE
Q 000971 992 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTG----RTVVCTIHQPGI-DIFDAFDEL 1051 (1206)
Q Consensus 992 a~aL~~----------~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~-----~~g----~tvi~~~H~p~~-~i~~~~d~v 1051 (1206)
|++|+. +|++|+|||||+|||+.++..+++.|+++. +.| .+|++++|+.+. ++-+.+|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999874 333 678899998762 377778888
Q ss_pred E-EEec
Q 000971 1052 F-LMKR 1056 (1206)
Q Consensus 1052 ~-ll~~ 1056 (1206)
. .|..
T Consensus 248 ~~~Lpe 253 (413)
T 1tq4_A 248 ISDLPI 253 (413)
T ss_dssp HHHSCG
T ss_pred HHhCcc
Confidence 6 4443
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-22 Score=218.44 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=95.9
Q ss_pred cccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCC
Q 000971 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1206)
...+.+|+|| ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++|++|++
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC--------
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH------
Confidence 3446789986 89999999999999999999999999 876 777732111111112246799999975
Q ss_pred CHHHHH-HHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 242 TVRETL-AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 242 TV~Etl-~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+ .|.... +. .+. . . . + ...++.+++. ||
T Consensus 76 --~enl~~~~~~~------~~---~~~---~---~-~--~---------------~~~~~~~l~~-gl------------ 107 (208)
T 3b85_A 76 --NEKIDPYLRPL------HD---ALR---D---M-V--E---------------PEVIPKLMEA-GI------------ 107 (208)
T ss_dssp ------CTTTHHH------HH---HHT---T---T-S--C---------------TTHHHHHHHT-TS------------
T ss_pred --HHHHHHHHHHH------HH---HHH---H---h-c--c---------------HHHHHHHHHh-CC------------
Confidence 6666 342110 00 000 0 0 0 0 0112333332 22
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~ 388 (1206)
||||||+||++|+.+|++|+|||||+| +...+.+.|+++ . . +++|+ ++|+..++
T Consensus 108 ------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~-g~tii-vtHd~~~~ 161 (208)
T 3b85_A 108 ------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-F-GSKMV-VTGDITQV 161 (208)
T ss_dssp ------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-T-TCEEE-EEEC----
T ss_pred ------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-C-CCEEE-EECCHHHH
Confidence 999999999999999999999999999 788888888876 2 3 45566 77776544
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.6e-24 Score=228.32 Aligned_cols=183 Identities=12% Similarity=0.045 Sum_probs=121.7
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
..+++| .+|++|++++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcC
Confidence 457888 6899999999999999999999999999654 223333333332211 12456899999987777788887
Q ss_pred HHHHhhhhcC---CCCCCHHHHHHHHHHH------HHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 000971 934 SLLYSAWLRL---PPEVDSETRKMFIEEV------MELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1004 (1206)
Q Consensus 934 ~l~~~a~lr~---~~~~~~~~~~~~v~~~------l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~L 1004 (1206)
++.+...... ....+.++.++.+++. ++.+++.+..+..+ ..|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHH
Confidence 7642211110 0012334445556655 55666665555553 3566 89999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 1005 DEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 1005 DEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
||||+|+ |+..+..+++.++++.+ .|.|||+++|+++ ++...+|++++|.+.|
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 9999998 78899999999999874 4899999999987 6888999999996544
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-21 Score=200.00 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=100.4
Q ss_pred EEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~ 945 (1206)
.++|+||||||||||+++|+|... |.++|.+.... ..++.+||++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcC--
Confidence 689999999999999999999653 22333221111 2345689999975 222332 1 11110
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHH-----HhhCCcEEEEeC--CCCCCCHHHHHH
Q 000971 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 1018 (1206)
Q Consensus 946 ~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~a-----L~~~P~iL~LDE--PTsgLD~~~~~~ 1018 (1206)
.. .+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 65 --~~----------------~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 --TS----------------KKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp --CC----------------SSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred --Cc----------------ccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 00 0223333 34699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEec---CCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 1019 VMRTVRNTVDTGRTVVCTIH---QPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 1019 i~~~l~~~~~~g~tvi~~~H---~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 9888865 4778999986 433 45567776 4566665443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-22 Score=232.26 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=132.1
Q ss_pred cceEeeceeeeEeCCe--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC
Q 000971 164 HLTILKDVSGIIKPGR--------------------MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~--------------------~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~ 223 (1206)
...+|++||+.+++|+ +++|+||||||||||+|+|+|.++++ +|+|.++|.+.+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t--- 108 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT--- 108 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---
Confidence 3568999999999999 99999999999999999999999987 899999987653
Q ss_pred ccceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHH
Q 000971 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYL 303 (1206)
Q Consensus 224 ~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l 303 (1206)
+ .+|++|++ .++.+|+.||+.++.. + ..++.++
T Consensus 109 --~-~~~v~q~~-~~~~ltv~D~~g~~~~------~-------------------------------------~~~~~~L 141 (413)
T 1tq4_A 109 --M-ERHPYKHP-NIPNVVFWDLPGIGST------N-------------------------------------FPPDTYL 141 (413)
T ss_dssp --C-CCEEEECS-SCTTEEEEECCCGGGS------S-------------------------------------CCHHHHH
T ss_pred --e-eEEecccc-ccCCeeehHhhcccch------H-------------------------------------HHHHHHH
Confidence 1 27899985 6788999998755310 0 0135567
Q ss_pred HHcCCcccccccccCcccccCChh--hhhHHHHHHHHhc----------CCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 000971 304 KVLGLEVCADTMVGDEMIRGISGG--ERKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVNCLKQHVH 371 (1206)
Q Consensus 304 ~~lgL~~~~dt~vg~~~~~~LSGG--qkkRvsia~~l~~----------~~~vlllDEptsgLDs~t~~~i~~~L~~~~~ 371 (1206)
+.++|.+... . . .|||| ||||+.||++|.. +|++++|||||+|||+.+..++.+.|+++..
T Consensus 142 ~~~~L~~~~~-~-----~-~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~ 214 (413)
T 1tq4_A 142 EKMKFYEYDF-F-----I-IISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV 214 (413)
T ss_dssp HHTTGGGCSE-E-----E-EEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCccCC-e-----E-EeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH
Confidence 8888875422 1 2 29999 9999999999999 9999999999999999999999999988752
Q ss_pred ----hc---CCeEEEEEecCchh--HHhhcCeEE
Q 000971 372 ----IN---SGTAVISLLQPAPE--TYDLFDDII 396 (1206)
Q Consensus 372 ----~~---~~t~vi~i~q~~~~--~~~~fD~vi 396 (1206)
.. ..++|+...|...+ +.+++|+|.
T Consensus 215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 21 23445444554444 666666664
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-22 Score=228.23 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=117.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+|+++|+.|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 35899999999999999999999999999999999997 5777 357888876665 5888
Q ss_pred H-HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 245 E-TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 245 E-tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
| |+.|.... . + .+...++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~----~--~------------------------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA----T--H------------------------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE----C--H------------------------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc----c--H------------------------------------HHHHHHHHH-hHccCC---c----cC
Confidence 7 77653110 0 0 011223332 444444 3 37
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||| |||++.+|+||+ |++||+.+...|.. + +|. .++...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH~-~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HSR-VQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TTT-EEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hCC-HHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999877752 1 333 3345689999 9999999
Q ss_pred EEecChHHHHHHHHhc
Q 000971 404 VYQGPRELVLEFFESM 419 (1206)
Q Consensus 404 v~~G~~~~~~~~f~~~ 419 (1206)
++.|+++++..+|..+
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999986666553
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=208.23 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=69.2
Q ss_pred ccccCChhhhhHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 320 MIRGISGGERKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~----~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
.+..|||||||||+||++|+ .+|++++|||||++||+.....+.+.|+++. .+.+ |+.++|. .++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~-vi~~tH~-~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQ-FIVITHN-KIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSE-EEEECCC-TTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCe-EEEEECC-HHHHhhCceE
Confidence 34579999999999999997 6899999999999999999999999999863 3444 4556666 4688899986
Q ss_pred --EEEcCCeE-EEecChHH
Q 000971 396 --ILLSDGQI-VYQGPREL 411 (1206)
Q Consensus 396 --ilL~~G~i-v~~G~~~~ 411 (1206)
++|.+|.. +.....++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88888854 44444444
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-20 Score=191.58 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=54.1
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHH----------------HHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSS----------------TTFQIVNCLKQHVHINSGTAVISLLQPAP 386 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~----------------t~~~i~~~L~~~~~~~~~t~vi~i~q~~~ 386 (1206)
..||||||||+||++++.+|++++|||||++||+. ....+.+.|+++... +.| ++.++|..+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~t-vi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFR-YVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCS-EEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCc-EEEEeCCHH
Confidence 46999999999999999999999999999999999 558888888777543 444 555677777
Q ss_pred hHHh
Q 000971 387 ETYD 390 (1206)
Q Consensus 387 ~~~~ 390 (1206)
++..
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 6643
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-20 Score=194.65 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=100.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSR 259 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~~ 259 (1206)
.++|+||||||||||+++|+|.+. ..+.|... .+......++.++|++|+. ++.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 579999999999999999999975 22333221 1111001245789999974 222222 10 00
Q ss_pred hhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHH--
Q 000971 260 YELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM-- 337 (1206)
Q Consensus 260 ~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~-- 337 (1206)
+.. .+..++ ..+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~--~~~~~~-~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFT--SKKLVG-SYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCC--CSSEET-TEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCC--cccccc-ccccCcCHHHHHHHHHHhhcc
Confidence 000 001122 2344799999999999996
Q ss_pred ---HhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe--cCchhHHhhcCeEEEEcCCeEEE
Q 000971 338 ---MVGPALALFMDE--ISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL--QPAPETYDLFDDIILLSDGQIVY 405 (1206)
Q Consensus 338 ---l~~~~~vlllDE--ptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~--q~~~~~~~~fD~vilL~~G~iv~ 405 (1206)
++.+|++++||| ||++||+.....+.+.|++ .+.++|++.| |+.+.+..++|+ .+|++++
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999888888764 3455777775 788888888887 5566655
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.9e-21 Score=211.36 Aligned_cols=147 Identities=13% Similarity=0.098 Sum_probs=97.7
Q ss_pred EEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVD 948 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~ 948 (1206)
.+||+||||||||||+|+|+|...+ .+|+|.++|.+......++.+||++|++.+++.+||.|++.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~--~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS--RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--NC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT--TC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH--HH
Confidence 4899999999999999999997653 4799999998775545567899999999999999999999887543321 11
Q ss_pred HHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000971 949 SETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028 (1206)
Q Consensus 949 ~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~ 1028 (1206)
. +.+.+.++ ....+.+. ..||||||||++|||+++. ++||||||.|||+.. .+.++.+.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 12333333 33444443 3699999999999999886 999999999999987 445555655
Q ss_pred CCCEEEEEecCC
Q 000971 1029 TGRTVVCTIHQP 1040 (1206)
Q Consensus 1029 ~g~tvi~~~H~p 1040 (1206)
. .+||+++|.-
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999974
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-20 Score=209.58 Aligned_cols=154 Identities=15% Similarity=0.128 Sum_probs=119.4
Q ss_pred eecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CC
Q 000971 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HS 926 (1206)
Q Consensus 857 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~ 926 (1206)
++++|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 4678999999999999999999999999999997542 258999999875421 12 235899999988 88
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEE
Q 000971 927 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 1004 (1206)
Q Consensus 927 ~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~--iL~L 1004 (1206)
|.+|++|++.+... + . .+ ..+++.+|+.+..+.++ ..|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~-~--~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E-G--YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T-T--CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c-C--Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88999999987532 1 1 00 13566777777666664 3588 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 000971 1005 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1039 (1206)
Q Consensus 1005 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1039 (1206)
| ||+|||+... ++++. ..|.|+|++||.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 9 9999998754 24444 358999999994
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-19 Score=206.92 Aligned_cols=131 Identities=16% Similarity=0.113 Sum_probs=104.4
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTVYES 934 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~ 934 (1206)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+.... ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999997764 379999998642110 0122233321
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000971 935 LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014 (1206)
Q Consensus 935 l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~ 1014 (1206)
+ |||+||++||++|..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 1015 AAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 1015 ~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
.+++.|+.+...+.|+|+|+|.++ ....+||+++|.+|.
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 356677776543458999999987 577899999998753
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-21 Score=221.24 Aligned_cols=169 Identities=12% Similarity=0.145 Sum_probs=123.5
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
|.++||++.++ ..+|++||+.|++|+++||+||||||||||+++|+|.. +|+|
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I-------- 154 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV-------- 154 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE--------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE--------
Confidence 56777776553 24899999999999999999999999999999999976 3566
Q ss_pred cccccceEEEeecCCCCCCCCCHHH-HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QETFARISGYCEQNDIHSPFVTVYE-SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~~~~~~~gyv~q~~~~~~~~Tv~e-~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
++|++|++.++. .|++| |+.|.. +.+. .+++.++.+ |.+..+ +..|||||||
T Consensus 155 -------~~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQ 207 (305)
T 2v9p_A 155 -------LSFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKH 207 (305)
T ss_dssp -------ECGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSS
T ss_pred -------EEEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHH
Confidence 245677766554 46776 765531 1111 345566654 433333 2479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
| ||||+.+|+||| ||+||+.+...|+. .+|+++ .+..+|++ +|++ |++++.|+.
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~- 261 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD- 261 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH-
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH-
Confidence 9 999999999999 99999999888752 189876 36789999 9985 799988875
Q ss_pred cchhHHHHHHHhC
Q 000971 1068 RHSCQLISYFEAI 1080 (1206)
Q Consensus 1068 ~~~~~~~~yf~~~ 1080 (1206)
.++-.+|..+
T Consensus 262 ---~el~~~y~~l 271 (305)
T 2v9p_A 262 ---ADWKSFFVRL 271 (305)
T ss_dssp ---HHHHHHHHHS
T ss_pred ---HHHHHHHHHH
Confidence 3455566654
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-22 Score=216.30 Aligned_cols=177 Identities=10% Similarity=-0.030 Sum_probs=109.4
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecCCCCCCCCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSPFVT 930 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~~~~~~T 930 (1206)
.-|+||||++++|+++||+||||||||||+++|+|.. + |+|.+ |.+.... ..++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 3699999999999999999999999999999999965 2 66777 6543211 12456789999866554333
Q ss_pred H-HHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHH-----HHHHhhCCcEEE
Q 000971 931 V-YESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIF 1003 (1206)
Q Consensus 931 v-~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~i-----a~aL~~~P~iL~ 1003 (1206)
. .+++.+ ..+..+ ...+ +..++++++...+. ..+ ..||||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~~-~~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEY-DNYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEE-EEETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhh-hhcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 111111 001110 0111 12366777654432 111 2589999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCCchHHHHhcCeEE
Q 000971 1004 MDEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPGIDIFDAFDELF 1052 (1206)
Q Consensus 1004 LDEPTsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~p~~~i~~~~d~v~ 1052 (1206)
|||||+++|..+...|.+.|.++.. .+.+.|++.|++. +.+..+|+++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 9999999999999999988877643 2345555555543 3444444443
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=193.19 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=74.7
Q ss_pred Ccccc-cCChhhhhHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchh
Q 000971 318 DEMIR-GISGGERKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387 (1206)
Q Consensus 318 ~~~~~-~LSGGqkkRvsia~~l~---------~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~ 387 (1206)
+..++ .+||||||||+||++|+ ++|+||+|||||++||+.....+++.|+++ . .++|+++|. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 44566 79999999999999999 899999999999999999999999999864 2 566667774 33
Q ss_pred HHhhcCeEEEEcCCeEEEecChHHH
Q 000971 388 TYDLFDDIILLSDGQIVYQGPRELV 412 (1206)
Q Consensus 388 ~~~~fD~vilL~~G~iv~~G~~~~~ 412 (1206)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998764
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-19 Score=203.88 Aligned_cols=174 Identities=15% Similarity=0.157 Sum_probs=126.4
Q ss_pred eeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC---------ccceEEEecCCCC-C
Q 000971 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---------PERTAAYISQHDN-H 237 (1206)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~---------~~~~~~yv~Q~d~-~ 237 (1206)
++++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... .++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45789999999999999999999999999999999876 899999998765421 1235899999988 8
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
+|.+||+|++.++... +. | ..+++.+|+.+..+..+
T Consensus 167 ~~~~~v~e~l~~~~~~-~~-----------------------d-------------------~~lldt~gl~~~~~~~~- 202 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSLM- 202 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEECCCCCSSCCHHHH-
T ss_pred CHHHHHHHHHHHHHHc-CC-----------------------c-------------------chHHhcCCCCcchhHHH-
Confidence 8999999999885321 00 0 01234566666555444
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------ch
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQP---------AP 386 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~--vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~---------~~ 386 (1206)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.++|+ ++|- ..
T Consensus 203 ----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 203 ----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp ----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred ----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 3589 999999999999999 99999 99999987542 3333333455555 5552 12
Q ss_pred hHHhhcCeEEEEcCCeE
Q 000971 387 ETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 387 ~~~~~fD~vilL~~G~i 403 (1206)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 33345667888888854
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-19 Score=200.80 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=88.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSR 259 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~~ 259 (1206)
.++|+||||||||||+|+|+|...++ +|+|.++|.++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47899999999999999999999887 89999999887554445789999999999999999999998754321100
Q ss_pred hhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHHh
Q 000971 260 YELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339 (1206)
Q Consensus 260 ~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~ 339 (1206)
.+.+ .+. +. ....+..+ ..|||||||||++||+++
T Consensus 80 ~~~i-----------------------------------~~~-~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 WEPI-----------------------------------EKY-IN----EQYEKFLK-----EEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp SHHH-----------------------------------HHH-HH----HHHHHHHH-----HHSCTTCCSSCCCCSCCE
T ss_pred HHHH-----------------------------------HHH-HH----HHHHhhhH-----HhcCcccchhhhhheeee
Confidence 0000 000 00 11112222 369999999999999987
Q ss_pred cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 000971 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL 382 (1206)
Q Consensus 340 ~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~ 382 (1206)
. ++|+|||+.|||+.. .+.++.+.. . .++|++++
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~ 148 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIA 148 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEET
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEe
Confidence 5 999999999999976 344444432 2 55555443
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-17 Score=189.24 Aligned_cols=77 Identities=23% Similarity=0.319 Sum_probs=69.4
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeE
Q 000971 978 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 978 ~~~LSgGqrq------rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
+..||||||| |+++|++|+.+|++|||||||+|||+.....+.+.|+++.+.|.|||+++|++. +...+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 4579999999 677888888999999999999999999999999999998777899999999964 67899999
Q ss_pred EEEec
Q 000971 1052 FLMKR 1056 (1206)
Q Consensus 1052 ~ll~~ 1056 (1206)
+.|..
T Consensus 324 ~~l~~ 328 (339)
T 3qkt_A 324 IRISL 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-19 Score=206.67 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=120.0
Q ss_pred ecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CCC
Q 000971 858 NGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HSP 927 (1206)
Q Consensus 858 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~~ 927 (1206)
..+|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 468899999999999999999999999999997542 258999999876421 12 345899999988 888
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEe
Q 000971 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 1005 (1206)
Q Consensus 928 ~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~--iL~LD 1005 (1206)
..|++|++.+... + . .+ ..+++.+|+.+..+.++ ..|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~-~--~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E-G--YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T-T--CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C-C--CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999987532 1 1 10 13456677777666654 3588 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 000971 1006 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1039 (1206)
Q Consensus 1006 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1039 (1206)
||+|||+.... +++. ..|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999987653 3444 348999999994
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-18 Score=194.16 Aligned_cols=182 Identities=15% Similarity=0.147 Sum_probs=116.0
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEE-EEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITG-NITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
.+|+++++.+++|++++|+||||||||||++.|+|...+. .| .|.+.+.........+.+.++.+... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 4799999999999999999999999999999999954321 24 45443333222222222222332221 22334
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH-HHHHHHHHHHhhCCcEEEEeCCCC---
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS--- 1009 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq-rqrl~ia~aL~~~P~iL~LDEPTs--- 1009 (1206)
++.... + +.++..+.++++++..++. +.+. ...+|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 443221 1 1122233344444322221 1111 13588898 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCc-h--------------------HHHHhcCeEEEEecC
Q 000971 1010 G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPG-I--------------------DIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1010 g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~p~-~--------------------~i~~~~d~v~ll~~g 1057 (1206)
+ +|. .....+++.|++++++ |+|||+++|+.. . .+...+|+|++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6678899999999765 999999999962 1 467789999999875
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.5e-21 Score=205.66 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=104.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----cceEEEecCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1206)
..-|+|||+.|++|++++|+||||||||||+++|+|.+ | |+|.+ |.+.....+ ++.++|++|++..|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34699999999999999999999999999999999987 3 77888 766543322 3467899998655544
Q ss_pred CCH-HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 241 MTV-RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 241 lTV-~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
++. .+++.+. .+.+ ..|... ...++.+++...+ ..+.
T Consensus 83 ~~~~~~~l~~~-~~~~--~~~g~~--------------------------------~~~i~~~l~~~~~-----~il~-- 120 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYAN--NFYGTL--------------------------------KSEYDKAKEQNKI-----CLFE-- 120 (218)
T ss_dssp HHHTTCEEEEE-EETT--EEEEEE--------------------------------HHHHHHHHHTTCE-----EEEE--
T ss_pred hhhccchhhhh-hccc--ccCCCc--------------------------------HHHHHHHHhCCCc-----EEEE--
Confidence 321 1111100 0000 000000 0012233332221 1221
Q ss_pred ccccCChhhhhHHHH-----HHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 320 MIRGISGGERKRVTT-----GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsi-----a~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|...... .+ +.| ...||.
T Consensus 121 --~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~~d~ 187 (218)
T 1z6g_A 121 --MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLNFNL 187 (218)
T ss_dssp --ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSCCSE
T ss_pred --ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccCCCE
Confidence 3699999999999 88999999999999999999999999998888765432 12 112 245777
Q ss_pred EEEEcC
Q 000971 395 IILLSD 400 (1206)
Q Consensus 395 vilL~~ 400 (1206)
|+++++
T Consensus 188 iiv~~~ 193 (218)
T 1z6g_A 188 SIINDD 193 (218)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 776654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-19 Score=214.98 Aligned_cols=174 Identities=16% Similarity=0.094 Sum_probs=135.7
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc---cCCc--------ccccceEEEeecC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY---PKKQ--------ETFARISGYCEQN 922 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~gyv~q~ 922 (1206)
..+|+++ +.+.+|++++|+||||||||||+++|+|...+ ..|.|.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4599999 99999999999999999999999999997664 3799999997 3321 2356789999995
Q ss_pred -CCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000971 923 -DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001 (1206)
Q Consensus 923 -~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~i 1001 (1206)
+..++.+|+.+++.+.+....... -......+. ...||+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~----------------~~v~~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRG----------------QHVLLIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTT----------------CEEEEEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCC----------------CCHHHHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 455677899999987653221000 001111222 24699999 999999 888988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1002 IFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1002 L~LDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|+|||+.+...+.+.+.++.+ + |. ||++++|+++ ...+|++++|.+ |+++..|++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999998865 3 64 9999999987 456899999985 799988763
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-18 Score=199.53 Aligned_cols=173 Identities=15% Similarity=0.162 Sum_probs=126.8
Q ss_pred eceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC---------ccceEEEecCCCC-CC
Q 000971 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---------PERTAAYISQHDN-HI 238 (1206)
Q Consensus 169 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~---------~~~~~~yv~Q~d~-~~ 238 (1206)
+++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688999999999999999999999999999999876 899999998764321 1235899999988 88
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 000971 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1206)
Q Consensus 239 ~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1206)
|.+||+|++.++... +. | ..+++.+|+.+..+..+
T Consensus 225 p~~tv~e~l~~~~~~-~~-----------------------d-------------------~~lldt~Gl~~~~~~~~-- 259 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSLM-- 259 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEEECCCCSSCCHHHH--
T ss_pred hhhhHHHHHHHHHhC-CC-----------------------H-------------------HHHHHhcCCChhhhhHH--
Confidence 999999999986421 00 0 01234456665554443
Q ss_pred cccccCChhhhhHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------chh
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQP---------APE 387 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~--vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~---------~~~ 387 (1206)
..|| |||+.||++++.+|+ +|+|| ||+|||+.... +.+....+.++|+ ++|. ...
T Consensus 260 ---~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 260 ---EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ---HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ---HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 3589 999999999999999 99999 99999987642 2333223455555 5552 223
Q ss_pred HHhhcCeEEEEcCCeE
Q 000971 388 TYDLFDDIILLSDGQI 403 (1206)
Q Consensus 388 ~~~~fD~vilL~~G~i 403 (1206)
+....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 3345667777777753
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-19 Score=211.92 Aligned_cols=180 Identities=14% Similarity=0.117 Sum_probs=138.6
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCe---eCCCC--------CccceEEEec
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH---DMGEF--------VPERTAAYIS 232 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~---~~~~~--------~~~~~~~yv~ 232 (1206)
...+|+++ +.|.+|+.++|+|||||||||||++|+|..+++ .|.|.++|. ++.++ ..++.++|++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 35699999 999999999999999999999999999999987 999999998 44332 1246799999
Q ss_pred CC-CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc
Q 000971 233 QH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVC 311 (1206)
Q Consensus 233 Q~-d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1206)
|. +..++.+||.+|+.+.++.... .. .+. ...
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~------~~v---------------------------~~~ 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------RG------QHV---------------------------LLI 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------TT------CEE---------------------------EEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------CC------CCH---------------------------HHH
Confidence 95 5667888999999886542110 00 000 000
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh--cCCe-----EEEEEecC
Q 000971 312 ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI--NSGT-----AVISLLQP 384 (1206)
Q Consensus 312 ~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~--~~~t-----~vi~i~q~ 384 (1206)
.| .+..+|||| |||+|| +++|++ |+|||+.+...+.+.+.++.+. .++. +|+...|+
T Consensus 253 ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 01 134699999 999999 788877 9999999999999999886542 2242 56666677
Q ss_pred chhHHhhcCeEEEEcCCeEEEecChHHH
Q 000971 385 APETYDLFDDIILLSDGQIVYQGPRELV 412 (1206)
Q Consensus 385 ~~~~~~~fD~vilL~~G~iv~~G~~~~~ 412 (1206)
.. ...+|++++|.+|+++..|++.++
T Consensus 317 l~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 66 678999999999999999987765
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-20 Score=199.07 Aligned_cols=184 Identities=12% Similarity=0.085 Sum_probs=111.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+|+| ..|++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 69999999999999999999999999999852 23333333322211 1235689999998788888888
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHH------HHHcCCcccccccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYY------LKVLGLEVCADTMVGD 318 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt~vg~ 318 (1206)
|++.+.....+....|....+ +....++.. ++.+|+.+.++..+
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~----------------------------~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 132 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQ----------------------------PVRAAAATGVPVLIEVDLAGARAIKKTMP-- 132 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHH----------------------------HHHHHHHHTCCEEEECCHHHHHHHHHHCT--
T ss_pred CCceeehhhcCchhhcCCcHH----------------------------HHHHHHHcCCeEEEEeCHHHHHHHHHhcC--
Confidence 776432111100000000000 000111111 23334433333332
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGL----DSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgL----Ds~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
+.|| +|+.+|++++|||||+|| |+.....+.+.++++.+..+. +++.++|+.+++..++|+
T Consensus 133 ---~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~-tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 133 ---EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF-DKVVVNRRLESACAELVS 197 (207)
T ss_dssp ---TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGS-SEEEECSSHHHHHHHHHH
T ss_pred ---CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC-cEEEECCCHHHHHHHHHH
Confidence 2466 889999999999999998 788999999999888654444 455578999999999999
Q ss_pred EEEEc
Q 000971 395 IILLS 399 (1206)
Q Consensus 395 vilL~ 399 (1206)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.2e-17 Score=186.48 Aligned_cols=79 Identities=11% Similarity=0.142 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCe
Q 000971 980 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDE 1050 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~---------~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~ 1050 (1206)
.||+|||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998763 799999994 4 2 7899
Q ss_pred EEEEecCcEEEEEcCCC
Q 000971 1051 LFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1051 v~ll~~gg~~~~~g~~~ 1067 (1206)
+++|++ |+++..|+..
T Consensus 337 i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEE 352 (359)
T ss_dssp EEEEET-TEEEECCCTT
T ss_pred EEEEEC-CEEEecCCHH
Confidence 999985 7999888864
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-18 Score=193.54 Aligned_cols=128 Identities=10% Similarity=-0.009 Sum_probs=95.6
Q ss_pred ceee-eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHH
Q 000971 170 DVSG-IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLA 248 (1206)
Q Consensus 170 ~vs~-~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~ 248 (1206)
|++. .+++|++++|+||||||||||+++|+|.+++. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 3444 37899999999999999999999999998874 332 358999999999988 9999986
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
+... .+.... .| ...+..+|+.++ ....+..+ ..+||||
T Consensus 143 ~~~~-~g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YN---------------RRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 4211 111000 01 112344566666 43333433 4699999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCH
Q 000971 329 RKRVTTGEMMVGPALALFMDEISTGLDS 356 (1206)
Q Consensus 329 kkRvsia~~l~~~~~vlllDEptsgLDs 356 (1206)
+|||++|++++.+|+|+++|||+..+|.
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-18 Score=194.32 Aligned_cols=157 Identities=10% Similarity=-0.027 Sum_probs=110.5
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL 943 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~ 943 (1206)
+++|+++||+||||||||||+++|+|...+. +|. +.++||+|++.+++. |++|++.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~-- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHRK-- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTCT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHhc--
Confidence 8999999999999999999999999965431 121 347999999998887 999998642211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 000971 944 PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023 (1206)
Q Consensus 944 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l 1023 (1206)
+.+.....+.+.++|+.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1122222345778888887 54444443 4699999999999999999999999999999998521 112
Q ss_pred HHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 1024 RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 1024 ~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+++. + .+|++.|+.+.......+|.+.+.
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 2222 3 346666665433334556665554
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-17 Score=190.23 Aligned_cols=132 Identities=12% Similarity=0.168 Sum_probs=99.4
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 246 (1206)
+++++|+.+++|++++|+|||||||||||++|+|.++++ +|.|+++|.+ +.. .+.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~--------------~~~------ 214 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIV--------------FKH------ 214 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCC--------------CSS------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccc--------------ccc------
Confidence 789999999999999999999999999999999999987 9999999853 110 000
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCCh
Q 000971 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326 (1206)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1206)
.+ .. . ..+ .+ |
T Consensus 215 ------~~---~~----------------------------------------------i-------~~~-----~g--g 225 (330)
T 2pt7_A 215 ------HK---NY----------------------------------------------T-------QLF-----FG--G 225 (330)
T ss_dssp ------CS---SE----------------------------------------------E-------EEE-----CB--T
T ss_pred ------ch---hE----------------------------------------------E-------EEE-----eC--C
Confidence 00 00 0 000 01 8
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG-TAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 327 GqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~-t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
||+||++||++|..+|+++++||||+. ++.+.|+.+. .++ ++++++|.+ . +.+.+|++++|.+|..
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~--~g~~tvi~t~H~~-~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC--SGHKGTLTTLHAG-S-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH--TTCCCEEEEEECS-S-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh--cCCCEEEEEEccc-H-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3456666543 344 455555444 3 7888999999988853
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-16 Score=157.52 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=69.8
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeE
Q 000971 978 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia------~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
+..||||||||++|| ++|+.+|++|||||||+|||+.+...+.+.|+++.++|+|||+++|++ ++...+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 467999999999886 899999999999999999999999999999999877799999999997 356889999
Q ss_pred EEEe
Q 000971 1052 FLMK 1055 (1206)
Q Consensus 1052 ~ll~ 1055 (1206)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9995
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.2e-19 Score=215.32 Aligned_cols=167 Identities=19% Similarity=0.148 Sum_probs=114.5
Q ss_pred eEEeeccee-eeeCCeEEEEEccCCCcHHHHHhh--hcCCCCCCeeEEEEEEcCccCCcc--cccceEEEeecCCCCCCC
Q 000971 854 LVLLNGLSG-AFRPGVLTALMGVSGAGKTTLMDV--LSGRKTGGYITGNITISGYPKKQE--TFARISGYCEQNDIHSPF 928 (1206)
Q Consensus 854 ~~vL~~vs~-~i~~G~~~al~G~sGaGKSTLl~~--L~g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~q~~~~~~~ 928 (1206)
..+|++||+ .+++|++++|+||||||||||+++ ++|...++ +|.|+++|.+.... ..++.+||++|+....++
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~ 102 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK 102 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc
Confidence 458999999 999999999999999999999999 67865533 68999999874321 223457898887432211
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000971 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008 (1206)
Q Consensus 929 ~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPT 1008 (1206)
+.+ +... . .. ...++++.++|.+..+..+ ..||+ .+|++|+|||||
T Consensus 103 ------l~~---~~~~-~-~~-----~~~~~l~~~~l~~~~~~~~-----~~LS~-------------g~~~~lilDe~t 148 (525)
T 1tf7_A 103 ------LFI---LDAS-P-DP-----EGQEVVGGFDLSALIERIN-----YAIQK-------------YRARRVSIDSVT 148 (525)
T ss_dssp ------EEE---EECC-C-CS-----SCCSCCSSHHHHHHHHHHH-----HHHHH-------------HTCSEEEEECST
T ss_pred ------EEE---EecC-c-cc-----chhhhhcccCHHHHHHHHH-----HHHHH-------------cCCCEEEECCHH
Confidence 111 0000 0 00 0111222222222222221 12444 468899999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH--------HHHhcCeEEEEec
Q 000971 1009 S-----GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGID--------IFDAFDELFLMKR 1056 (1206)
Q Consensus 1009 s-----gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~--------i~~~~d~v~ll~~ 1056 (1206)
+ +||+..+..++++++.+++.|+|||+++|+++.. ....+|+|++|++
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 8 4699999999999999988899999999998731 2345999999987
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-17 Score=211.62 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=113.2
Q ss_pred eEEeecceeeeeC-------CeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC
Q 000971 854 LVLLNGLSGAFRP-------GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS 926 (1206)
Q Consensus 854 ~~vL~~vs~~i~~-------G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~ 926 (1206)
..+++||++.+++ |++++|+|||||||||||++| |.... .++..+||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------------~aqiG~~Vpq~~~-- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------------MAQMGCYVPAEVC-- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------------HHTTTCCEESSEE--
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------------HhheeEEeccCcC--
Confidence 4599999999988 999999999999999999999 85431 1222238998753
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000971 927 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1006 (1206)
Q Consensus 927 ~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDE 1006 (1206)
.+||.|++.. + +|+.+.... +.+.+|+|+++ +++|++++.+|++|||||
T Consensus 828 -~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 828 -RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVDE 876 (1022)
T ss_dssp -EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEEC
T ss_pred -CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEEC
Confidence 4566555421 1 111111111 12457777765 999999999999999999
Q ss_pred CCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 1007 PTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 1007 PTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
||+|+|+.. ...++.+|+.+.++ |++||++||+++ .+...+|++.++. |++.
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEE
Confidence 999999987 46678999999876 999999999976 3556789998875 6776
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=173.77 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=65.5
Q ss_pred cccccCChhhhh------HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhc
Q 000971 319 EMIRGISGGERK------RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1206)
Q Consensus 319 ~~~~~LSGGqkk------Rvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~f 392 (1206)
..+..||||||| |+++|++++.+|++|+|||||+|||+.....+++.|+++.. .+.+++ .++|+ +++.+.|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi-~~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVI-LVSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEE-EEESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEE-EEECh-HHHHHhC
Confidence 345689999999 67788888999999999999999999999999999998754 345544 46666 5688999
Q ss_pred CeEEEEc
Q 000971 393 DDIILLS 399 (1206)
Q Consensus 393 D~vilL~ 399 (1206)
|+|++|.
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999985
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-17 Score=184.04 Aligned_cols=156 Identities=10% Similarity=-0.007 Sum_probs=98.8
Q ss_pred CceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000971 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 931 (1206)
Q Consensus 852 ~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 931 (1206)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3457999999999999999999999999999999999853 222222 1355689999985 6678999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000971 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1206)
Q Consensus 932 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgL 1011 (1206)
.|++.+......... +.....+.+.+.++.+ .+..+.. ...||+||+||+.+ ++++.+|+++|||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876432211111 1111122344455543 2333333 24699999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000971 1012 DARAAAIVMRTVRNTVDTGRTVVCTIHQP 1040 (1206)
Q Consensus 1012 D~~~~~~i~~~l~~~~~~g~tvi~~~H~p 1040 (1206)
|.. +.++ .+.||++++|+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD 165 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH
Confidence 763 2222 378999999973
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.1e-17 Score=178.80 Aligned_cols=132 Identities=19% Similarity=0.241 Sum_probs=96.9
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 935 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 935 (1206)
+|+++| +++|++++|+||||||||||+++|+|...+. .+|+|.++|.++. |++|....+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~---------~~~~~~~~~--------- 74 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE---------YVFKHKKSI--------- 74 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCC---------SCCCCSSSE---------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcce---------eecCCccee---------
Confidence 799999 9999999999999999999999999965421 1689999987642 223321100
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 000971 936 LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015 (1206)
Q Consensus 936 ~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~ 1015 (1206)
+. . +.+++.. ..| |++||++|..+|++|+||||| |+.+
T Consensus 75 -----v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 00 0 0112211 122 899999999999999999999 9888
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 1016 AAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 1016 ~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
...+ ++. +..|.+|++|+|+++ ....+|+++.|.+
T Consensus 113 ~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 333 357999999999976 5678999988864
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-16 Score=196.64 Aligned_cols=148 Identities=15% Similarity=0.095 Sum_probs=105.9
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhc--------CCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS--------GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 925 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~--------g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~ 925 (1206)
..+++||++.+.+|++++|+|||||||||||++++ |...+. .+. .++.+ +
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa--~~~---------------~~~~~---d-- 706 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC--ESA---------------EVSIV---D-- 706 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE--EEE---------------EEECC---S--
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc--ccc---------------cchHH---H--
Confidence 46899999999999999999999999999999994 321110 110 01110 0
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHH--hhCCcEEE
Q 000971 926 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIF 1003 (1206)
Q Consensus 926 ~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL--~~~P~iL~ 1003 (1206)
+++..+|+.+ .+ ..++|++++++..+|++| +.+|++||
T Consensus 707 --------------------------------~i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 707 --------------------------------CILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp --------------------------------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred --------------------------------HHHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 0011111111 11 135888888888888888 99999999
Q ss_pred EeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1004 MDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1004 LDEPTsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|||||+|||+.....+ +.+++.+.+ .|+|||++||++ ++...+|++..+.+ |++.+.++.
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 9999999999988777 677777876 499999999995 46788999998885 788776654
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-16 Score=181.00 Aligned_cols=186 Identities=14% Similarity=0.064 Sum_probs=110.5
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCeeCCCCCccceEEEecCCCCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSG-RVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G-~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1206)
...+|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|.. .++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~----~~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRV----RLR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTC----CGG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCC----Chh
Confidence 356899999999999999999999999999999999998764 46 5654432211000000111111110 001
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
+.+++..+ .+ ...+....++.+++..++. ..+ ...
T Consensus 94 ~~~~l~~~--------------~~------------------------~~~~~~~~~~~~l~~~~l~-i~~------~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------II------------------------ENGKFDQWFDELFGNDTFH-LYD------SFA 128 (296)
T ss_dssp GCHHHHHH--------------HH------------------------HHTHHHHHHHHHHSSSCEE-EEC------CCC
T ss_pred hccccccC--------------CC------------------------CHHHHHHHHHHHhccCCEE-EEC------CCC
Confidence 11111110 00 0011112233333322221 111 123
Q ss_pred cCChhh-hhHHHHHHHHhcCCccceeecCCC---C---CCH-HHHHHHHHHHHHHHHhcCCeEEEEEecCc--h------
Q 000971 323 GISGGE-RKRVTTGEMMVGPALALFMDEIST---G---LDS-STTFQIVNCLKQHVHINSGTAVISLLQPA--P------ 386 (1206)
Q Consensus 323 ~LSGGq-kkRvsia~~l~~~~~vlllDEpts---g---LDs-~t~~~i~~~L~~~~~~~~~t~vi~i~q~~--~------ 386 (1206)
.+|.+| ++|+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.++|+ ++|.. .
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHE 206 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC---------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCccccccccc
Confidence 588888 67776 999999999999999999 5 455 66678899999988755555555 55653 3
Q ss_pred --------------hHHhhcCeEEEEcCCeE
Q 000971 387 --------------ETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 387 --------------~~~~~fD~vilL~~G~i 403 (1206)
.+...||+|++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-15 Score=185.16 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=66.4
Q ss_pred ccccC-ChhhhhHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 320 MIRGI-SGGERKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 320 ~~~~L-SGGqkkRvsia~~l~~~~--~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
.+..| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|++++. +.+ |+.++|... +...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~-vi~itH~~~-~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQ-VLVVTHLAQ-IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSE-EEEECCCHH-HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCE-EEEEecCHH-HHHhCCEEE
Confidence 35567 999999999999999999 99999999999999999999999999864 444 555677754 556799999
Q ss_pred EEcCC
Q 000971 397 LLSDG 401 (1206)
Q Consensus 397 lL~~G 401 (1206)
+|.+|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99655
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.8e-17 Score=174.48 Aligned_cols=158 Identities=17% Similarity=0.141 Sum_probs=97.1
Q ss_pred Eeecce-eeeeCCeEEEEEccCCCcHHHHHhhhcCC--CCCC---eeEEEEEEcCccCCcccccceEEEeecCCCCCCCC
Q 000971 856 LLNGLS-GAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGG---YITGNITISGYPKKQETFARISGYCEQNDIHSPFV 929 (1206)
Q Consensus 856 vL~~vs-~~i~~G~~~al~G~sGaGKSTLl~~L~g~--~~~~---~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~ 929 (1206)
.|+.+- +-+++|++++|+||||||||||+++|+|. ..++ ...|.+++++..... .+.++++.|...+.+.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~- 88 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD- 88 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-
Confidence 344433 68999999999999999999999999983 3211 123567777653210 1112333333222221
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH-HHHHHHHHHHHHhh-------CCcE
Q 000971 930 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST-EQRKRLTIAVELVA-------NPSI 1001 (1206)
Q Consensus 930 Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg-Gqrqrl~ia~aL~~-------~P~i 1001 (1206)
|+.||+.+. ...+. .+++.+..+.+++. +|++
T Consensus 89 ~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 128 (231)
T 4a74_A 89 EVLKHIYVA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKL 128 (231)
T ss_dssp HHHHTEEEE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred HHhhcEEEE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeE
Confidence 222322111 01233 33344566666665 8999
Q ss_pred EEEeCCCCCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCch---HHHHhcCeEEEEecC
Q 000971 1002 IFMDEPTSGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPGI---DIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1002 L~LDEPTsgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~p~~---~i~~~~d~v~ll~~g 1057 (1206)
|+|||||+++|+. . ...+++.|+++++ .|+|||+++|.... .+...+|+++.|.+|
T Consensus 129 lilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 129 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp EEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred EEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 9999999999983 2 2367777777764 49999999994431 266788999999874
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-16 Score=176.63 Aligned_cols=140 Identities=15% Similarity=0.045 Sum_probs=86.5
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1206)
..+++|+|+|+.+++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 3456999999999999999999999999999999999975 222233 1245789999985 778899
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
+.|++.+.......... + ..+.+ .+...|+. |.+..+.. +.
T Consensus 75 ~~~~~~~~~~~~~~~~~-~----------------~~~~~---------------~~~~~L~~--l~~~~~~~-----~~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP-D----------------AFDND---------------LMHRTLKN--IVEGKTVE-----VP 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG-G----------------GBCHH---------------HHHHHHHH--HHTTCCEE-----EC
T ss_pred HhHhhhhhccCCCCCCc-c----------------cccHH---------------HHHHHHHH--HHCCCCee-----cc
Confidence 99998775432111000 0 00000 01112222 22333333 34
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHH
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~ 357 (1206)
.+|+||+||+.+ ++++.+|+++++|||...+|..
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 799999999987 5788899999999998888763
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.3e-17 Score=186.58 Aligned_cols=175 Identities=15% Similarity=0.205 Sum_probs=121.8
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc----------ccccceEEEeecCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ----------ETFARISGYCEQND 923 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------~~~~~~~gyv~q~~ 923 (1206)
..+|+++ +.|.+|+++||+||||||||||+++|+|...++ .|.|.+.|.+... ..+.+.+.++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4599999 999999999999999999999999999976644 6889888864211 12345677777754
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 000971 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1003 (1206)
Q Consensus 924 ~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~ 1003 (1206)
. ...+.+.-.. ....+.+.....+ .+... .. ..+..||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~------------~~~~~ae~~~~~~-~~vl~-~l--d~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 136 R-----PALERMKAAF------------TATTIAEYFRDQG-KNVLL-MM--DSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp S-----CHHHHHHHHH------------HHHHHHHHHHTTT-CEEEE-EE--ETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred C-----CHHHHHHHHH------------HHHHHHHHHHhcc-ccHHH-HH--hhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 2 2222221000 0000111111111 01000 00 1135799999 899999 688887
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1004 MDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1004 LDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|+|||+.....+.++++++.+ .|. ||++++|+.+ ...+|++++|.+ |+++..|++
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999864 477 9999999987 356899999985 799988764
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.7e-16 Score=195.84 Aligned_cols=145 Identities=14% Similarity=0.116 Sum_probs=98.4
Q ss_pred ceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 000971 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVY 932 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~ 932 (1206)
...+++|||+.+++|++++|+|||||||||||+++++...... .|...... ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-------~g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-------IGSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-------HTCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-------cCccccch--hhhhhHH---HHHHHhCChH
Confidence 3569999999999999999999999999999999975311000 01111100 0111211 1111111111
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000971 933 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012 (1206)
Q Consensus 933 e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD 1012 (1206)
++ ... +.+.+|+|++|++.|+++ +.+|++|||||||+|||
T Consensus 727 d~----------------------------------l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DN----------------------------------IYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HH----------------------------------HHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 11 111 134689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCCchHHHHhcCeE
Q 000971 1013 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 1013 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
+.....+. .+++.+.+ .|+|||++||++. +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99888887 77777765 5999999999965 45666654
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-15 Score=191.86 Aligned_cols=89 Identities=12% Similarity=0.118 Sum_probs=68.9
Q ss_pred ccCChhhhhHHHHHHHH--hcCCccceeecCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 322 RGISGGERKRVTTGEMM--VGPALALFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l--~~~~~vlllDEptsgLDs~t~~~i~-~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
+++|+|+++++.+|+++ +.+|++++|||||+|||+.....+. ..++.+....+.+++ .++|. .++..++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl-~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCM-FATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEE-EEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEE-EEcCc-HHHHHHhccccee
Confidence 46888888888888888 8999999999999999999998884 556665543344544 46666 5677899999999
Q ss_pred cCCeEEEecChHHH
Q 000971 399 SDGQIVYQGPRELV 412 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1206)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876543
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-17 Score=178.51 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=112.5
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC--CCCCHHHHHHHhhhh
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTVYESLLYSAWL 941 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~~Tv~e~l~~~a~l 941 (1206)
.++|+++||+||||||||||+++|+|...+ .++|++|++.+. ..+|+++++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 468999999999999999999999986431 368999988776 5689988875531
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH----HHHHHHHHHHhhCCcEEEEeCCCCC-------
Q 000971 942 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1010 (1206)
Q Consensus 942 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq----rqrl~ia~aL~~~P~iL~LDEPTsg------- 1010 (1206)
..+. ....+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~----~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPD----AFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGG----GBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChh----hhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1111 11223467788888887766554 34688886 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 000971 1011 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1040 (1206)
Q Consensus 1011 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~p 1040 (1206)
||+.....+.+.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988875 45699999999974
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.2e-16 Score=193.04 Aligned_cols=133 Identities=20% Similarity=0.145 Sum_probs=97.3
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
..+++|||+. |++++|+|||||||||||++|+|..... ..|.+. |. .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~-~~G~~v----pa----~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA-QVGSFV----PA----EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH-TTTCCB----SS----SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc-ccCcee----eh----hccceeeHHH---hhccCCHHH
Confidence 4699999999 9999999999999999999999853100 112221 11 1234677765 344455554
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHH--hhCCcEEEEeCC---C
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1008 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL--~~~P~iL~LDEP---T 1008 (1206)
++. .++|+|+++++.+|++| +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 431 14799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCchHHHHhc
Q 000971 1009 SGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAF 1048 (1206)
Q Consensus 1009 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~ 1048 (1206)
++||..+. ..+++.|++ .|+|||++||+++ +...+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh
Confidence 99999875 578877765 4899999999954 44443
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.9e-16 Score=177.01 Aligned_cols=181 Identities=14% Similarity=0.146 Sum_probs=124.3
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC----------CccceEEEecC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----------VPERTAAYISQ 233 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~----------~~~~~~~yv~Q 233 (1206)
...+|+++ +.|.+|+.++|+|||||||||||++|+|..+++ .|.|.+.|++..+. ..++.+.+++|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 35689999 999999999999999999999999999999987 89999988652111 01245777777
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccc
Q 000971 234 HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCAD 313 (1206)
Q Consensus 234 ~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1206)
.+. +..+.+.-... .. ...++ ....| .+
T Consensus 134 ~~~-----~~~~r~~~~~~-------------~~-----------------------------~~ae~-~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFT-------------AT-----------------------------TIAEY-FRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHH-------------HH-----------------------------HHHHH-HHTTT----CE
T ss_pred CCC-----CHHHHHHHHHH-------------HH-----------------------------HHHHH-HHhcc----cc
Confidence 542 22222211100 00 00000 00011 01
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCe-----EEEEEecCchhH
Q 000971 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGT-----AVISLLQPAPET 388 (1206)
Q Consensus 314 t~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t-----~vi~i~q~~~~~ 388 (1206)
..+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.++++....+++ +|+..+|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 110002245699999 899999 577776 99999999999999998865312344 5666667766
Q ss_pred HhhcCeEEEEcCCeEEEecChHHH
Q 000971 389 YDLFDDIILLSDGQIVYQGPRELV 412 (1206)
Q Consensus 389 ~~~fD~vilL~~G~iv~~G~~~~~ 412 (1206)
..+||++++|.+|+++..|+..++
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 567999999999999999987754
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.8e-17 Score=182.16 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=85.6
Q ss_pred ceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC-CCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 000971 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR-KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 931 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 931 (1206)
++.++++++|.| +|+||||||||||++.|+|. .. +.+| +.++|.+.......+.++|++|.+.....+|+
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 457999999998 99999999999999999986 33 2357 77777665332223457899998887788999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC-
Q 000971 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG- 1010 (1206)
Q Consensus 932 ~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsg- 1010 (1206)
.|+.-++..... .+..+..++.+. +..+.. .+++|||||||+.+||+++ +|++||||++
T Consensus 81 ~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAINC-----RDCFKTIISYID------EQFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHHH------HHHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 998876533210 010011122211 222333 2469999999999998885 9999999985
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 000971 1011 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPG 1041 (1206)
Q Consensus 1011 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~ 1041 (1206)
||+... +.++++... +.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 555666543 788999999964
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.7e-16 Score=179.39 Aligned_cols=163 Identities=19% Similarity=0.136 Sum_probs=99.4
Q ss_pred Eeecc-eeeeeCCeEEEEEccCCCcHHHHHhhhcCCC--CC--CeeEEE-EEEcCccCCcccccceEEEeecCCCCCCCC
Q 000971 856 LLNGL-SGAFRPGVLTALMGVSGAGKTTLMDVLSGRK--TG--GYITGN-ITISGYPKKQETFARISGYCEQNDIHSPFV 929 (1206)
Q Consensus 856 vL~~v-s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~--~~--~~~~G~-i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~ 929 (1206)
.|+.+ .+.+++|++++|+||||||||||++.|++.. .+ |...|. |+|++.+.. .++.+++++|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 45665 6899999999999999999999999999854 21 111356 888886531 12234555554433222
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh-------hCCcEE
Q 000971 930 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV-------ANPSII 1002 (1206)
Q Consensus 930 Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~-------~~P~iL 1002 (1206)
++.+|+.+.. . .-|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~~-------------------------------~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVAR-------------------------------A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEE-------------------------------C--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEe-------------------------------c--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 3333332210 0 01456777777777777 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 1003 FMDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 1003 ~LDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
++||||+++|+.. ...+++.|+++++ .|+|||+|+|... ..-..|+...... ||+++.+
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~ 307 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAH 307 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCT
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEee
Confidence 9999999999852 3556666777665 4999999999865 3333444444444 4554433
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-15 Score=173.49 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=102.6
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cc--cceEEEeecCCCCCCCCCHHHHHH
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDIHSPFVTVYESLL 936 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~~~~~~Tv~e~l~ 936 (1206)
+|++++|+||||||||||+++|+|...+. .|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999999975532 58999999875321 11 245899999998888899999987
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHH
Q 000971 937 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDAR 1014 (1206)
Q Consensus 937 ~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~--iL~LDEPTsgLD~~ 1014 (1206)
+... +. .+ ..+++..|+.+..+.. ++..++||++|||+|+.+|+ +|.|| |+++.
T Consensus 179 ~~~~-~~-~d----------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~--- 234 (304)
T 1rj9_A 179 AMKA-RG-YD----------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ--- 234 (304)
T ss_dssp HHHH-HT-CS----------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT---
T ss_pred HHHh-CC-CC----------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH---
Confidence 6421 10 00 0122233333222222 45566899999999999999 45555 55554
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 000971 1015 AAAIVMRTVRNTVDT-GRTVVCTIHQPG 1041 (1206)
Q Consensus 1015 ~~~~i~~~l~~~~~~-g~tvi~~~H~p~ 1041 (1206)
.+++.++++.+. |.|+|++||+..
T Consensus 235 ---~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 235 ---NGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred ---HHHHHHHHHHHHcCCcEEEEECCcc
Confidence 455566666544 899999999854
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-15 Score=164.36 Aligned_cols=153 Identities=18% Similarity=0.137 Sum_probs=90.1
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC---C-CceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHH
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS---L-KVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLA 248 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~---~-~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~ 248 (1206)
+-+++|++++|+||||||||||+++|+|.+.+. . ...|.|.+++... ...+.++++.|...+++. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~---~~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC---CCHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC---CCHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 689999999999999999999999999954431 0 0134555555321 001123333333222222 3333322
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
+. +..++++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 21 1122222
Q ss_pred -hhHHHHHHHHh-------cCCccceeecCCCCCCHH-------H-----HHHHHHHHHHHHHhcCCeEEEEEecCch--
Q 000971 329 -RKRVTTGEMMV-------GPALALFMDEISTGLDSS-------T-----TFQIVNCLKQHVHINSGTAVISLLQPAP-- 386 (1206)
Q Consensus 329 -kkRvsia~~l~-------~~~~vlllDEptsgLDs~-------t-----~~~i~~~L~~~~~~~~~t~vi~i~q~~~-- 386 (1206)
++.+..++.++ .+|+++++||||++||+. . ..++++.|+++++..+ .+|+.++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g-~tvi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCC-CeEEEEeecccCc
Confidence 22234444443 489999999999999984 1 2367788887776544 44555677444
Q ss_pred --hHHhhcCeEEEEcCC
Q 000971 387 --ETYDLFDDIILLSDG 401 (1206)
Q Consensus 387 --~~~~~fD~vilL~~G 401 (1206)
.+...+|.++.|++|
T Consensus 184 g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 184 GHILAHSATLRVYLRKG 200 (231)
T ss_dssp ------CCSEEEEEEEC
T ss_pred chhhHhhceEEEEEEec
Confidence 478889999999875
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-15 Score=187.53 Aligned_cols=154 Identities=14% Similarity=0.044 Sum_probs=102.9
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
..+++|+|+. ++|++++|+|||||||||||++|+|....+. .|..+... ...++++.| +++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4689999999 9999999999999999999999998421100 12111111 123555544 344455555
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~ 1013 (1206)
++... .+.+|+|+++ +..+..++.+|++||||||++|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 44210 1246667664 4555567899999999999999998
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEE
Q 000971 1014 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1206)
Q Consensus 1014 ~~~~~i-~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~ 1063 (1206)
.....+ +.+++.+.+ .|+|||++||++. +...+|++..+.+ |++.+.
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~ 750 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDAL 750 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEE
Confidence 776664 788888887 4999999999975 4567887766654 555544
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-16 Score=166.36 Aligned_cols=145 Identities=17% Similarity=0.119 Sum_probs=104.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCC--CCCCHHHHHHHHhh
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHI--GEMTVRETLAFSAR 252 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~Etl~f~~~ 252 (1206)
.++|++++|+||||||||||+++|+|.+.+ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998653 378999988776 67899988765321
Q ss_pred hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh----
Q 000971 253 CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE---- 328 (1206)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 328 (1206)
.. .. .+ ...+...++.+++.+..+.. ...+|+||
T Consensus 61 ~~---~~-------------------~~---------------~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP---DA-------------------FD---------------LALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SG---GG-------------------BC---------------HHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Ch---hh-------------------hh---------------HHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 00 00 00 11233455666766544433 34688986
Q ss_pred hhHHHHHHHHhcCCccceeecCCCC-------CCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 000971 329 RKRVTTGEMMVGPALALFMDEISTG-------LDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383 (1206)
Q Consensus 329 kkRvsia~~l~~~~~vlllDEptsg-------LDs~t~~~i~~~L~~~~~~~~~t~vi~i~q 383 (1206)
+||++++++++.+|.++++||||++ ||+.....+.+.+++.....+.+++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999998876544345555544443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-14 Score=158.85 Aligned_cols=151 Identities=21% Similarity=0.197 Sum_probs=102.6
Q ss_pred eeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhc
Q 000971 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLR 942 (1206)
Q Consensus 863 ~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr 942 (1206)
.+++|++++|+||||||||||+..+++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 589999999999999999999999997432 2333 23443211 2346677665421 01111111 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC--CCCHHH---HH
Q 000971 943 LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AA 1017 (1206)
Q Consensus 943 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTs--gLD~~~---~~ 1017 (1206)
. +... ..++++++.+.+.+..+.. +..||+||++++ ++++.+|++|++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1222 2356678888887766554 356999998865 68889999999999999 999744 47
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCc
Q 000971 1018 IVMRTVRNTV-DTGRTVVCTIHQPG 1041 (1206)
Q Consensus 1018 ~i~~~l~~~~-~~g~tvi~~~H~p~ 1041 (1206)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999865
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.1e-15 Score=169.95 Aligned_cols=128 Identities=19% Similarity=0.250 Sum_probs=86.5
Q ss_pred eeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhc
Q 000971 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLR 942 (1206)
Q Consensus 863 ~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr 942 (1206)
.+.+|++++|+|||||||||||++|+|...+. ..|.|...+.+... ......+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccc---------------
Confidence 67899999999999999999999999965321 12455443333221 11111233333321111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 000971 943 LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022 (1206)
Q Consensus 943 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~ 1022 (1206)
.++..+ +||++|..+|++|++|||| |..+...
T Consensus 182 -------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~---- 213 (356)
T 3jvv_A 182 -------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETIRL---- 213 (356)
T ss_dssp -------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHH----
T ss_pred -------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHH----
Confidence 122222 8999999999999999999 6665443
Q ss_pred HHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 1023 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1023 l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
+.+++.+|+|||+|+|+++. + ..+||++.|..|
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 34456679999999999873 3 889999998653
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-15 Score=170.80 Aligned_cols=156 Identities=12% Similarity=0.129 Sum_probs=80.4
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK-LDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~-l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1206)
.+.+++++++.| +|+||||||||||+++|+|. +.+. +| |.++|.++..-...+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 6665 78 8888876643222345789999888888999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|.||+.|+..... ..+++ ..++++.+. .+ ...+
T Consensus 80 v~Dt~g~~~~~~~-~e~~~-----------------------------------~l~~~l~~~------~~-----~~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-RDCFK-----------------------------------TIISYIDEQ------FE-----RYLH 112 (301)
T ss_dssp EEEEC------------CT-----------------------------------THHHHHHHH------HH-----HHHH
T ss_pred hhhhhhhhhhcCc-HHHHH-----------------------------------HHHHHHHHH------HH-----HHHH
Confidence 9999887532110 00000 001111111 11 2345
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCc
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTG-LDSSTTFQIVNCLKQHVHINSGTAVISLLQPA 385 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsg-LDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~ 385 (1206)
++|||||||+.+|++++ ++++||||++ ||+... +.++++.. ....+++...|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 79999999999988875 9999999985 999872 45555432 2245555555554
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-15 Score=173.70 Aligned_cols=168 Identities=19% Similarity=0.187 Sum_probs=98.1
Q ss_pred eEeece-eeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC--CCC-CCceeE-EEECCeeCCCCCccceEEEecCCCCCCCC
Q 000971 166 TILKDV-SGIIKPGRMTLLLGPPASGKTTLLLALAGKL--DSS-LKVSGR-VTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1206)
Q Consensus 166 ~iL~~v-s~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l--~~~-~~~~G~-I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1206)
..|+++ +|.|++|++++|+||||||||||++.|++.. +++ ....|. |.+++.+. + ..+.++|++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH
Confidence 345665 6899999999999999999999999999987 433 011367 77777543 1 12345666665444333
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
++.||+.+....
T Consensus 195 -~v~~ni~~~~~~------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 -EVLKHIYVARAF------------------------------------------------------------------- 206 (349)
T ss_dssp -HHGGGEEEEECC-------------------------------------------------------------------
T ss_pred -HHhhCEEEEecC-------------------------------------------------------------------
Confidence 444444332100
Q ss_pred cccCChhhhhHHHHHHHHh-------cCCccceeecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEE
Q 000971 321 IRGISGGERKRVTTGEMMV-------GPALALFMDEISTGLDSST------------TFQIVNCLKQHVHINSGTAVISL 381 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~-------~~~~vlllDEptsgLDs~t------------~~~i~~~L~~~~~~~~~t~vi~i 381 (1206)
-|++|++++.++++++ .+|+++++||||++||+.. ..++++.|+++++..+ ++|+.+
T Consensus 207 ---~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~-~tvii~ 282 (349)
T 1pzn_A 207 ---NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVT 282 (349)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEE
T ss_pred ---ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEE
Confidence 0233444444444444 7899999999999999852 3556667777776444 455556
Q ss_pred ecCchhHHhhcCeEEEEcCCeEEEecC
Q 000971 382 LQPAPETYDLFDDIILLSDGQIVYQGP 408 (1206)
Q Consensus 382 ~q~~~~~~~~fD~vilL~~G~iv~~G~ 408 (1206)
.|........|++......|+++.+++
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EECC---------------CCCCCTTC
T ss_pred cccccccccccCCccccCCcceEeecC
Confidence 676655555566677777787766654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.1e-15 Score=158.91 Aligned_cols=167 Identities=14% Similarity=0.134 Sum_probs=105.7
Q ss_pred EEeeccee-eeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccc---eEEEeecCCCCCCCCC
Q 000971 855 VLLNGLSG-AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR---ISGYCEQNDIHSPFVT 930 (1206)
Q Consensus 855 ~vL~~vs~-~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gyv~q~~~~~~~~T 930 (1206)
..|+++.+ .+++|++++|+||||||||||++.|++.... ..|.+.+.+.+.......+ ..|+.+|..... .+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 46889885 8999999999999999999999999974321 1234444333221111000 011111110000 000
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCC
Q 000971 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPT 1008 (1206)
Q Consensus 931 v~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~--iL~LDEPT 1008 (1206)
+ ++.....++ ...+ ....|.++.++...+.....+|+ +|++||||
T Consensus 87 ~------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 I------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp E------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred E------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0 000000000 0000 12358999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------hHHHHhcCeEEEEecC
Q 000971 1009 SGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPG-------IDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1009 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~-------~~i~~~~d~v~ll~~g 1057 (1206)
+++ |+.....+++.|+++++ .|+|||+++|+.. ..+...+|++++|.+.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 888 99888999999999864 5999999999973 2377789999999863
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-15 Score=192.10 Aligned_cols=159 Identities=15% Similarity=0.080 Sum_probs=110.1
Q ss_pred ceEeeceeeeEeC-------CeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEE-EecCCCC
Q 000971 165 LTILKDVSGIIKP-------GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAA-YISQHDN 236 (1206)
Q Consensus 165 ~~iL~~vs~~i~~-------G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~-yv~Q~d~ 236 (1206)
..|++|+++.+++ |++++|+|||||||||||++| |.+.+ ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC
Confidence 4689999999987 999999999999999999999 88642 11234 8999752
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1206)
.+||.|++.. + +|+.+...
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555410 0 01110000
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHH-HHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ-IVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~-i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
.....+|++++ ++++|++++.+|++++||||++|+|+..... ++..|+.+.... +.+++.++|..+.+..++|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHHhCCcc
Confidence 01234677666 4999999999999999999999999988544 567787775432 445566788888888889998
Q ss_pred EEEcCCeEE--EecChH
Q 000971 396 ILLSDGQIV--YQGPRE 410 (1206)
Q Consensus 396 ilL~~G~iv--~~G~~~ 410 (1206)
.++ +|++. +.|+++
T Consensus 923 ~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECE 938 (1022)
T ss_dssp SEE-EEEEEEC------
T ss_pred eee-cCeEEEEEecCcc
Confidence 887 58887 556544
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-16 Score=166.22 Aligned_cols=159 Identities=22% Similarity=0.245 Sum_probs=104.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHHHHHHHhhhcCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGV 256 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~ 256 (1206)
|++++|+||||||||||+++|+|.++ + +| |.++|....+... ++.++|++|+. ... ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78899999999999999999999987 5 78 9999887754322 46789999963 111 1111 00000
Q ss_pred CchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHH-H
Q 000971 257 GSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT-G 335 (1206)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsi-a 335 (1206)
.++ + ...+..+|.. ...+|||||+++.. +
T Consensus 67 -------------------~~~-~-----------------------------~~~~~~v~~~-~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 67 -------------------EPP-P-----------------------------GKRECRVGQY-VVDLTSFEQLALPVLR 96 (189)
T ss_dssp -------------------CCC-S-----------------------------SSCCEESSSS-EECHHHHHTTTTTTTC
T ss_pred -------------------cCC-c-----------------------------cccccccceE-EEcchHHHHHHHHHHh
Confidence 000 0 0012245533 34699999999844 4
Q ss_pred H---HHhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEE---EEecCchhHHhhcCeEEEEcCCeEEEec
Q 000971 336 E---MMVGPALALFMDE--ISTGLDSSTTFQIVNCLKQHVHINSGTAVI---SLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1206)
Q Consensus 336 ~---~l~~~~~vlllDE--ptsgLDs~t~~~i~~~L~~~~~~~~~t~vi---~i~q~~~~~~~~fD~vilL~~G~iv~~G 407 (1206)
+ |+..+|+|++||| |+..+|......+.+.++ ...++|+ +++|..+ ..+.|+|..+.+|+++.-.
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~-----~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS-----TPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH-----CSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh-----CCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 4 5789999999999 898898876444444443 2345553 3336553 3566888888889887644
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=139.23 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=68.7
Q ss_pred CcccccCChhhhhHHHHH------HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhh
Q 000971 318 DEMIRGISGGERKRVTTG------EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia------~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~ 391 (1206)
+..+..|||||||||+|| ++|+.+|++++|||||+|||+.+...+.+.|+++.. .+.++|+ ++|.. ++.+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii-vsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVIL-VSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEE-EESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEE-EEChH-HHHHh
Confidence 455678999999999876 899999999999999999999999999999998754 3455544 56665 67889
Q ss_pred cCeEEEE--cCCeE
Q 000971 392 FDDIILL--SDGQI 403 (1206)
Q Consensus 392 fD~vilL--~~G~i 403 (1206)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 45643
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-16 Score=164.34 Aligned_cols=161 Identities=19% Similarity=0.145 Sum_probs=102.5
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~ 945 (1206)
|++++|+||||||||||+++|+|... . +| |.++|....+ ..+++.+||++|+. .... +++ +.+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~~- 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGLE- 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccccc-
Confidence 78999999999999999999999654 2 46 7777766543 23467789999975 2111 111 111110
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHH-HHHH---HHhhCCcEEEEeC--CCCCCCHHHHHHH
Q 000971 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIV 1019 (1206)
Q Consensus 946 ~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl-~ia~---aL~~~P~iL~LDE--PTsgLD~~~~~~i 1019 (1206)
.+ ....+..+|.. ...+|+|||+++ ++++ |+..+|+|||||| ||..+|......+
T Consensus 68 -~~-----------------~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 68 -PP-----------------PGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp -CC-----------------SSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred -CC-----------------ccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 00 00011133332 235999999888 4454 6789999999999 8999998765555
Q ss_pred HHHHHHHHhCCCEEEE----EecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 1020 MRTVRNTVDTGRTVVC----TIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1020 ~~~l~~~~~~g~tvi~----~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
.+++ +...++|+ ++|+.+ ....|+|..+. +|+++....-.
T Consensus 129 ~~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~-~~~i~~~~~~n 172 (189)
T 2i3b_A 129 RQTL----STPGTIILGTIPVPKGKP---LALVEEIRNRK-DVKVFNVTKEN 172 (189)
T ss_dssp HHHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTC-CSEEEECCSSS
T ss_pred HHHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecC-CcEEEEeChHh
Confidence 5444 44455553 238864 23457776665 57777765533
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-15 Score=187.95 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=110.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCeeCCC------CCccceEEEecCCCCCCCCCCHHHHHHHHhhh
Q 000971 181 TLLLGPPASGKTTLLLALAGKLDS-SLKVSGRVTYNGHDMGE------FVPERTAAYISQHDNHIGEMTVRETLAFSARC 253 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~~-~~~~~G~I~~nG~~~~~------~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~ 253 (1206)
++|+|||||||||||++|+|...| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999876 5 8999999988521 12346799999999999999999999886432
Q ss_pred cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHH
Q 000971 254 QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333 (1206)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvs 333 (1206)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 11000 0111 11222
Q ss_pred HHHHHhcCCccceeecC------CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCch----hHHhh---c-----CeE
Q 000971 334 TGEMMVGPALALFMDEI------STGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP----ETYDL---F-----DDI 395 (1206)
Q Consensus 334 ia~~l~~~~~vlllDEp------tsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~----~~~~~---f-----D~v 395 (1206)
++......|+++++||| |+|||+....++.+.++.+.....+.+++.++|..+ ++.++ . ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22223357999999999 999999999999999998765555666666776654 12222 2 357
Q ss_pred EEEcCCeEEEecChHHHHH
Q 000971 396 ILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1206)
+|+.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8889988888887655544
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.3e-14 Score=178.80 Aligned_cols=155 Identities=12% Similarity=0.136 Sum_probs=97.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..|++|||+.+++|++++|+|||||||||||+++++..-.. ..|. +.+.. .+.++..+..+..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~----------~vpa~-~~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS----------YVPAE-EATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC----------CBSSS-EEEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc----------cccch-hhhhhHHHHHHHhCChH
Confidence 56899999999999999999999999999999998642110 0010 00110 01111112222222222
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
+++. ...+.+
T Consensus 727 d~l~----------------------------------------------------------------------~~~stf 736 (918)
T 3thx_B 727 DNIY----------------------------------------------------------------------KGRSTF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHHH----------------------------------------------------------------------HhHHHh
Confidence 2211 112468
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE-EcCCe
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL-LSDGQ 402 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~-~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil-L~~G~ 402 (1206)
|+|+++++.|+++ +.+|+++||||||+|||+.....+. ..++.+....+.+ ++.++|.. ++.+++|+.-- +.+++
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~t-vl~vTH~~-el~~l~~~~~~~v~n~~ 813 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL-TLFVTHYP-PVCELEKNYSHQVGNYH 813 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCE-EEEECSCG-GGGGHHHHTTTTEEEEE
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEeCcH-HHHHHHhhcccceEEEE
Confidence 9999999999998 8899999999999999999999998 5666665433444 45566664 45566665421 33444
Q ss_pred EEE
Q 000971 403 IVY 405 (1206)
Q Consensus 403 iv~ 405 (1206)
+.+
T Consensus 814 ~~~ 816 (918)
T 3thx_B 814 MGF 816 (918)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-13 Score=161.28 Aligned_cols=75 Identities=17% Similarity=0.324 Sum_probs=63.2
Q ss_pred ccCChhhhhHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 322 RGISGGERKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~----~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
..||||||||++||++++ .+|++++||||+++||+.....+.+.|+++.. .++.++.++|. .+....||++++
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 459999999999999999 68999999999999999999999999988642 23445556666 567788999999
Q ss_pred Ec
Q 000971 398 LS 399 (1206)
Q Consensus 398 L~ 399 (1206)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-14 Score=161.08 Aligned_cols=133 Identities=15% Similarity=0.232 Sum_probs=93.0
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHH
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
++|+++| +++|++++|+|||||||||||++|+|.+++. .+|+|.++|.++. |++|....+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce---------eecCCccee-------
Confidence 4799999 8999999999999999999999999998752 1799999986643 333321000
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
-.+ ..+|++. ..+
T Consensus 75 ------v~q-------------------------------------------------~~~gl~~-----------~~l- 87 (261)
T 2eyu_A 75 ------VNQ-------------------------------------------------REVGEDT-----------KSF- 87 (261)
T ss_dssp ------EEE-------------------------------------------------EEBTTTB-----------SCH-
T ss_pred ------eeH-------------------------------------------------HHhCCCH-----------HHH-
Confidence 000 0011210 012
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
|++||++|..+|+++++|||| |..+...+++ . +. .+.++ ++++|... +...+|++++|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~v-l~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHLV-FGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCEE-EEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCEE-EEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9988655443 2 22 34454 44555544 6788999988864
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.6e-15 Score=157.61 Aligned_cols=180 Identities=14% Similarity=0.111 Sum_probs=95.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC---CCeeEEEEEEcCc
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGY 905 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~ 905 (1206)
+.++|+++.+.. .+|++ +.+.+|..++|+|+||||||||++.|+|... ..+..|.+.+.+.
T Consensus 4 l~~~~~~~~~~~--------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMSA--------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEEE--------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheeec--------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 567888877641 36777 8899999999999999999999999999651 0122344332110
Q ss_pred c-C-CcccccceEEEeecCCCCCCCCC---HHHHHHHhhh---------hcCCCCCCHHHHHHHHHHHHHHcCCcccc-c
Q 000971 906 P-K-KQETFARISGYCEQNDIHSPFVT---VYESLLYSAW---------LRLPPEVDSETRKMFIEEVMELVELKPLI-Q 970 (1206)
Q Consensus 906 ~-~-~~~~~~~~~gyv~q~~~~~~~~T---v~e~l~~~a~---------lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~ 970 (1206)
- . ....+....|+.... .+.-. .+..+.+... +...........+..+.+.++..++.... .
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 0 0 000000011111100 00000 0111111000 00000000011223355666666665421 2
Q ss_pred cccCCCCCCCCCHHHHHH-HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 000971 971 SLVGLPGVSGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032 (1206)
Q Consensus 971 ~~~g~~~~~~LSgGqrqr-l~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1032 (1206)
.. ...+|+||||| +.++++++.+|.++++|||||++|......+++.|.++..+|.|
T Consensus 145 nK-----~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 TK-----ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EC-----GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ec-----ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 22 24689999999 89999999999999999999999999999999999988766644
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-14 Score=164.00 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---------cceEEEecCCCCCCCCCCHHHHH
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---------ERTAAYISQHDNHIGEMTVRETL 247 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~Etl 247 (1206)
+|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... ++.++|++|+...+|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999887 8999999988754321 23589999998889999999999
Q ss_pred HHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChh
Q 000971 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327 (1206)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1206)
.++.. .+. +. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~-~~~---------------d~---------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKA-RGY---------------DL---------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHH-HTC---------------SE---------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHh-CCC---------------CE---------------------------EEecCCCCCCchH--------HHHHHH
Confidence 87532 100 00 0111223222111 124455
Q ss_pred hhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 000971 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQP 384 (1206)
Q Consensus 328 qkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~ 384 (1206)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.++|+ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 58999999999999994433 344444445566666654444555555 5554
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-14 Score=179.05 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=94.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD-SSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~-~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1206)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. + ..+..++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4689999999 99999999999999999999999753 22 45431 0 01245677766 5566666
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
.|++.+ +
T Consensus 629 ~d~l~~-------------------------------------------------------------------------g 635 (765)
T 1ewq_A 629 SDDLAG-------------------------------------------------------------------------G 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHHh-------------------------------------------------------------------------c
Confidence 665431 5
Q ss_pred CChhhhhHHHHHHHH--hcCCccceeecC---CCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEEecCchhHHhhc
Q 000971 324 ISGGERKRVTTGEMM--VGPALALFMDEI---STGLDSSTT-FQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1206)
Q Consensus 324 LSGGqkkRvsia~~l--~~~~~vlllDEp---tsgLDs~t~-~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~f 392 (1206)
+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+++.|++ .+.++|+ ++|..+. ..++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~-~TH~~~l-~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLF-ATHYFEL-TALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEE-ECCCHHH-HTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEE-EeCCHHH-HHhh
Confidence 899999999999999 999999999999 999998875 567777765 3445554 5666443 3444
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-14 Score=178.44 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=93.4
Q ss_pred EEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC------cccccceEEEeecCCCCCCCCCHHHHHHHhhhhcC
Q 000971 870 TALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK------QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL 943 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~ 943 (1206)
+||+|||||||||||++|+|...+ ..+|.|.++|.++. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998643 13799999997631 12456789999999999999999999976432110
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC------CCCCCHHHHH
Q 000971 944 PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 1017 (1206)
Q Consensus 944 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEP------TsgLD~~~~~ 1017 (1206)
... .++| ++++.++++....|+++|+||| |+|||+....
T Consensus 127 ---------------------~~~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 ---------------------GEG-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp ---------------------CSS-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred ---------------------CCc-----------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 000 0111 1122223333458999999999 9999999999
Q ss_pred HHHHHHHHHHhC--CCEEEEEecCCc
Q 000971 1018 IVMRTVRNTVDT--GRTVVCTIHQPG 1041 (1206)
Q Consensus 1018 ~i~~~l~~~~~~--g~tvi~~~H~p~ 1041 (1206)
.+.++++++..+ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 677888999876
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-15 Score=172.70 Aligned_cols=163 Identities=11% Similarity=0.081 Sum_probs=93.5
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||++.+. ++.+++|+||.| +|+|+||||||||+++|+|........|.+.+++.+
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 366777765542 245899999998 999999999999999999965421112323232211
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
....+.++|++|++.+.+.+||.|++.|..... .......+.+.++ . .++.+++|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~---------~--------~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID---------S--------KFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC-----------------CHHHHHHHH---------H--------HHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH---------H--------HHHHHHHH
Confidence 112346899999888888899999987754321 0111011111111 1 25667788
Q ss_pred HHHHHHHHhhCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000971 988 RLTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1040 (1206)
Q Consensus 988 rl~ia~aL~~~P~---iL~LDEPT-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p 1040 (1206)
|++|||+++.+|+ +|++|||| .|||+... +.++.+. .+.+||+++|.-
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~ 177 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKA 177 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEEST
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEcc
Confidence 9999999999999 99999999 69998773 3344454 378888888864
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.4e-13 Score=144.27 Aligned_cols=78 Identities=15% Similarity=0.021 Sum_probs=62.1
Q ss_pred cCChhhhhHHHHHHHHhcCCc--cceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecCc--------hhHHh
Q 000971 323 GISGGERKRVTTGEMMVGPAL--ALFMDEISTGL--DSSTTFQIVNCLKQHVHINSGTAVISLLQPA--------PETYD 390 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~--vlllDEptsgL--Ds~t~~~i~~~L~~~~~~~~~t~vi~i~q~~--------~~~~~ 390 (1206)
..|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+|+.++|.. +.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhe
Confidence 358999888887777778999 99999999888 9988899999999887654 45556677776 56888
Q ss_pred hcCeEEEEcCC
Q 000971 391 LFDDIILLSDG 401 (1206)
Q Consensus 391 ~fD~vilL~~G 401 (1206)
++|+|++|...
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 99999999764
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.9e-13 Score=161.99 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=70.4
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 979 SGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 979 ~~L-SgGqrqrl~ia~aL~~~P--~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+||||+||+|. +...+|++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 457 999999999999999999 99999999999999999999999999987 899999999975 556799999997
Q ss_pred cC
Q 000971 1056 RG 1057 (1206)
Q Consensus 1056 ~g 1057 (1206)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=134.53 Aligned_cols=85 Identities=11% Similarity=0.167 Sum_probs=69.7
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEE
Q 000971 978 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~----~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~l 1053 (1206)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|++ .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35799999999999999974 4699999999999999999999999999864 57899999995 46789999986
Q ss_pred Ee--cCcEEEEEcC
Q 000971 1054 MK--RGGQEIYVGP 1065 (1206)
Q Consensus 1054 l~--~gg~~~~~g~ 1065 (1206)
+. +|...++...
T Consensus 139 v~~~~g~s~~~~~~ 152 (173)
T 3kta_B 139 VSMRDGVSKVVSLS 152 (173)
T ss_dssp EEEETTEEEEEECC
T ss_pred EEecCCEEEEEEEE
Confidence 54 3333344443
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-13 Score=174.95 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=99.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+++|+++. ++|++++|+||||||||||||+|+|..... ..| ..+.. ....++++.| +++.+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999964211 012 11110 1124555554 55666666
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
|++..+ .+.+
T Consensus 661 d~l~~~----------------------------------------------------------------------~stf 670 (800)
T 1wb9_A 661 DDLASG----------------------------------------------------------------------RSTF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh----------------------------------------------------------------------hhhh
Confidence 665431 0135
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i-~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|+|+++ ++.+...+.+|++++||||++|+|+.....+ ...++.+....+.++ +.++|.. +...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~v-l~~TH~~-el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALT-LFATHYF-ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEE-EEECSCG-GGGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeE-EEEeCCH-HHHHHhhhhhceEEEEE
Confidence 666654 4444445889999999999999999877776 566776654234454 4466665 44568888777778877
Q ss_pred EEec
Q 000971 404 VYQG 407 (1206)
Q Consensus 404 v~~G 407 (1206)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.2e-12 Score=136.72 Aligned_cols=154 Identities=19% Similarity=0.148 Sum_probs=99.6
Q ss_pred EEeecce-eeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 855 VLLNGLS-GAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 855 ~vL~~vs-~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
..|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.++++.. .. .+. +
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~-----------------~~----~~~-~ 60 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTE-----------------GG----FSP-E 60 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESS-----------------CC----CCH-H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECC-----------------CC----CCH-H
Confidence 3577777 4899999999999999999999999998 221 123333332 11 111 1
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHH--HHHHHHHHHHHhhC-CcEEEEeCCCCC
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSG 1010 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG--qrqrl~ia~aL~~~-P~iL~LDEPTsg 1010 (1206)
.+.- .... ...+. +++++.+.+ ...+++ +++++..+++++.+ |++|++||||+.
T Consensus 61 ~~~~--~~~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 61 RLVQ--MAET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHH--HHHT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHH--HHHh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 1110 0000 01111 122222211 123333 46788899999986 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCch------------HHHHhcCeEEEEecC
Q 000971 1011 LDARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPGI------------DIFDAFDELFLMKRG 1057 (1206)
Q Consensus 1011 LD~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~p~~------------~i~~~~d~v~ll~~g 1057 (1206)
+|... ...+++.|++++++ |+|||+++|.... .+...+|.+++|.+.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99732 34566668887654 8999999998651 366789999999864
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-14 Score=164.26 Aligned_cols=173 Identities=15% Similarity=0.111 Sum_probs=111.1
Q ss_pred eecceeeeeCCeE--EEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000971 857 LNGLSGAFRPGVL--TALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYES 934 (1206)
Q Consensus 857 L~~vs~~i~~G~~--~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 934 (1206)
|++||+.+++|++ +||+||||||||||+++|+|..- .|.. +.... ....++.++|++|++.+++.+||.|+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~~--~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHTQ--PGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC--SSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCCC--ccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 99999999999999999999742 1211 11111 11224578999999888888999999
Q ss_pred HHHhhhhcCCCCCC--HHHHHHHHHHHHHHc-CCcc----ccccc----cC--CCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000971 935 LLYSAWLRLPPEVD--SETRKMFIEEVMELV-ELKP----LIQSL----VG--LPGVSGLSTEQRKRLTIAVELVANPSI 1001 (1206)
Q Consensus 935 l~~~a~lr~~~~~~--~~~~~~~v~~~l~~l-~L~~----~~~~~----~g--~~~~~~LSgGqrqrl~ia~aL~~~P~i 1001 (1206)
+.|+.......... .+..+...++.|+.. ++.. ..|.. +. .+...+|+-.+ +.|+++|..+++|
T Consensus 103 ~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~v 179 (427)
T 2qag_B 103 VGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNI 179 (427)
T ss_dssp ECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEE
T ss_pred hhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCE
Confidence 87653210000000 011223445555554 4431 12221 11 12224577766 7899999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 000971 1002 IFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1039 (1206)
Q Consensus 1002 L~LDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1039 (1206)
|++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 180 I~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 180 IPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred EEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999988889888986 77789999988754
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-14 Score=153.61 Aligned_cols=128 Identities=16% Similarity=0.109 Sum_probs=86.2
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH----HHHHH
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV----YESLL 936 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv----~e~l~ 936 (1206)
.-..++|++++|+||||||||||+++|+|...+....|.|.+.+.+... ..++.++|++|++..++.+++ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 3456899999999999999999999999976532367899998876543 223457899987544443333 22221
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000971 937 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016 (1206)
Q Consensus 937 ~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~ 1016 (1206)
+.... .+.| +++ ..+++..++++||| ||+.++
T Consensus 89 ~~~~~-------------------------------------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VFGNY-------------------------------------YGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ETTEE-------------------------------------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHhcc-------------------------------------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 11100 0111 111 34455668999999 999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCc
Q 000971 1017 AIVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 1017 ~~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
..+++.+. +|.||++++|+++
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHHcc----CCEEEEEECCCHH
Confidence 99998875 5899999999975
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=147.10 Aligned_cols=153 Identities=12% Similarity=0.128 Sum_probs=97.7
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhh
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARC 253 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~ 253 (1206)
-+++|++++|+||||||||||++.|++.+. .|.+ +.|.+.. ....+.|+..++. . +.+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~-~~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------P-TAIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------H-HHHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------H-HHHH--HHH
Confidence 589999999999999999999999998654 3544 2343321 1346788877652 2 1111 000
Q ss_pred cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHH
Q 000971 254 QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333 (1206)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvs 333 (1206)
. .+ ..+ -+ ....+.+++.+++.+..+. .+..+|+||++++
T Consensus 88 ~----------~~---g~~------~~---------------~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 H----------AL---GAH------LS---------------AEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL- 127 (279)
T ss_dssp H----------HH---HTT------SC---------------HHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH-
T ss_pred H----------HH---Hhh------cC---------------hhhhhhccCceEEeecCCC-----CcccCCHHHHHHH-
Confidence 0 00 000 00 0113445677777665443 3456999998876
Q ss_pred HHHHHhcCCccceeecCCC--CCCHHHH---HHHHHHHHHHHHhcCCeEEEEEecCchh
Q 000971 334 TGEMMVGPALALFMDEIST--GLDSSTT---FQIVNCLKQHVHINSGTAVISLLQPAPE 387 (1206)
Q Consensus 334 ia~~l~~~~~vlllDEpts--gLDs~t~---~~i~~~L~~~~~~~~~t~vi~i~q~~~~ 387 (1206)
++++.+|+++++||||+ ++|.... .++++.|+.+++..+.| |+.++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t-vi~i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE-EEEEecCCCc
Confidence 57788999999999999 9997443 77888898887655555 4456666543
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.3e-13 Score=155.71 Aligned_cols=131 Identities=20% Similarity=0.264 Sum_probs=95.5
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 935 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 935 (1206)
+|++++ +++|++++|+||||||||||+++|+|...+. ..|.|.+.|.+... ..+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~-~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEY-VFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCS-CCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhh-hhccCceEEEeee------------
Confidence 677766 8999999999999999999999999965421 15888777655432 2344567777741
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 000971 936 LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015 (1206)
Q Consensus 936 ~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~ 1015 (1206)
+++. ...+ +.+|+.+|..+|++|++|||| |..+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 1221 1134 468999999999999999999 7765
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 1016 AAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 1016 ~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
.. .+++. +..|.+|++|+|..+ +...+||++.|.
T Consensus 224 ~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 43 34443 456999999999965 577889987764
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-16 Score=165.41 Aligned_cols=166 Identities=14% Similarity=0.148 Sum_probs=107.7
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE 946 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~ 946 (1206)
|++++|+||||||||||+++|++.. .|.+.++|.+.... ...|+++|.....+..++++++.+.+.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLL-- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHh--
Confidence 6899999999999999999999732 46788888643221 1246677655444456788887654322110
Q ss_pred CCHHHHHHHHHHHHHHcCCccccccccCC---CCCCCC--CHHHHHHHHHHH------HHhhCCcEEEEeCCCCCCCHHH
Q 000971 947 VDSETRKMFIEEVMELVELKPLIQSLVGL---PGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARA 1015 (1206)
Q Consensus 947 ~~~~~~~~~v~~~l~~l~L~~~~~~~~g~---~~~~~L--SgGqrqrl~ia~------aL~~~P~iL~LDEPTsgLD~~~ 1015 (1206)
-+...+.+...+. .....+ |+|++|++.++. +|+.+|+...+|+ +||+..
T Consensus 72 ----------------~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 72 ----------------AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp ----------------TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred ----------------cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0000011110000 000124 778888888888 8999999888884 899988
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecC-CchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1016 AAIVMRTVRNTVDTGRTVVCTIHQ-PGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1016 ~~~i~~~l~~~~~~g~tvi~~~H~-p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
... ++.++.+...+.+||.++|+ ++ ++.+.+|+|+ +.|++++.|++
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~ 179 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAG 179 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC---
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecC
Confidence 777 88888776668899999998 76 6888999998 46888888875
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-14 Score=153.93 Aligned_cols=152 Identities=13% Similarity=0.009 Sum_probs=92.3
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhc
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLR 942 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr 942 (1206)
+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+.++|++|+.. +..||.|++.+.+...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 67999999999999999999999999732 47899998653221 11234567776543 3578888887654221
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 000971 943 LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022 (1206)
Q Consensus 943 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~ 1022 (1206)
...... ..++.+++..++...... +. .+..+|+|++|++.++|++.++|+++ +|+.....+.+.
T Consensus 80 ~~~~~~-----~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 80 AKEGYF-----VILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHTSCE-----EEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred hccCCe-----EEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 000000 000111111112111100 10 12359999999999999999999876 688777777766
Q ss_pred HHHHHhCCCEEEEEe
Q 000971 1023 VRNTVDTGRTVVCTI 1037 (1206)
Q Consensus 1023 l~~~~~~g~tvi~~~ 1037 (1206)
++.+...+..+|-++
T Consensus 144 ~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 144 FADLGAFEHHVLPVS 158 (191)
T ss_dssp TTCCGGGGGGEEECT
T ss_pred HhccCcccccEEECC
Confidence 655433223344333
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-12 Score=152.53 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=100.0
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-ccccceEEEee-cCCCCCCCCCHHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-ETFARISGYCE-QNDIHSPFVTVYE 933 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~-q~~~~~~~~Tv~e 933 (1206)
+++++|+.+++|++++|+||||||||||+++|+|...+ ..|.|.++|..... ...++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999998764 37999999853211 12456678887 54321
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~ 1013 (1206)
+++++...+-.|+.+|..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222356667777888999999999985
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 1014 RAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 1014 ~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..+.+.|+.+.....|++.++|..+ ....+||+..|..++
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2455667666543457899999976 567899999998753
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-13 Score=146.71 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=96.8
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH----HHHHH
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTV----RETLA 248 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~Etl~ 248 (1206)
-..++|++++|+||||||||||+++|+|.++++ ...|.|.+++.+.... .++.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 357899999999999999999999999998753 3589999998765432 23457899997544443333 12211
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
+ .|+ +.|-.
T Consensus 89 ~------------------------------------------------------------------~~~-----~yg~~ 97 (219)
T 1s96_A 89 V------------------------------------------------------------------FGN-----YYGTS 97 (219)
T ss_dssp E------------------------------------------------------------------TTE-----EEEEE
T ss_pred H------------------------------------------------------------------Hhc-----cCCCC
Confidence 1 011 11111
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEecC
Q 000971 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1206)
Q Consensus 329 kkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~ 408 (1206)
+++ .+.++..+++++|| ||+.++.++.+.+. .+.+|+.+.|...++.. ++ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 222 23344556999999 99999999988764 35566667777666654 32 7777 678
Q ss_pred hHHHHHHHH
Q 000971 409 RELVLEFFE 417 (1206)
Q Consensus 409 ~~~~~~~f~ 417 (1206)
.+++...+.
T Consensus 155 ~e~i~~rl~ 163 (219)
T 1s96_A 155 EEVIAKRMA 163 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887765443
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.9e-13 Score=155.65 Aligned_cols=150 Identities=12% Similarity=0.063 Sum_probs=85.8
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1206)
.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ -...+.++|+.|.+..++.+||
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceee
Confidence 356899999998 99999999999999999999764311 2222222111 0112458899999888889999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
.||+.|+...... .. ...+.+++- ..
T Consensus 93 ~Dt~g~~~~~~~~-~~-----------------------------------~~~i~~~i~------------------~~ 118 (418)
T 2qag_C 93 VDTPGFGDAVDNS-NC-----------------------------------WQPVIDYID------------------SK 118 (418)
T ss_dssp EECC-----------------------------------------------CHHHHHHHH------------------HH
T ss_pred eechhhhhhccch-hh-----------------------------------HHHHHHHHH------------------HH
Confidence 9999885421100 00 000111110 13
Q ss_pred CChhhhhHHHHHHHHhcCCc---cceeecCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 000971 324 ISGGERKRVTTGEMMVGPAL---ALFMDEIS-TGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~---vlllDEpt-sgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q 383 (1206)
++.+.++|+.||++++.+|+ ++++|||| .|||+... +.++.+. .+.++|+++++
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~--~~v~iIlVinK 176 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH--EKVNIIPLIAK 176 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT--TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh--ccCcEEEEEEc
Confidence 66678889999999999999 99999999 69998763 3344432 24555555544
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=8.6e-13 Score=152.51 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=42.7
Q ss_pred HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 333 sia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
+||++|..+|+++++|||+ |..+...+.+ .+. .+.+ |++++|....+ ..+|+++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 8999999999999999999 7666444333 332 3555 55566665555 889999988654
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=7.6e-15 Score=171.51 Aligned_cols=169 Identities=14% Similarity=0.048 Sum_probs=94.1
Q ss_pred EeeceeeeEeC--CeEEEEEcCCCCcHHHHHHHHHcCCCCCCCce----eEEEECCeeCCCCCccceEEEecCCCCCCCC
Q 000971 167 ILKDVSGIIKP--GRMTLLLGPPASGKTTLLLALAGKLDSSLKVS----GRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1206)
Q Consensus 167 iL~~vs~~i~~--G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~----G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1206)
+.+.|+..|++ |+.++|+||||||||||+++|+|.+++. + |+|.+++... ..+..++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-------------~~~~~~~~ 220 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-------------GDEQAMQY 220 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-------------SCTTSSCT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-------------CCcccCCh
Confidence 35689999999 9999999999999999999999999886 6 6665532100 00001111
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
... +++.+... . .. ....+..+ ++. ++.....++ .
T Consensus 221 ~~~-~~I~~~~q--~----~~-~~~~t~~~---nl~-----------------------------~~~~~~~~~-----~ 255 (365)
T 1lw7_A 221 SDY-PQMALGHQ--R----YI-DYAVRHSH---KIA-----------------------------FIDTDFITT-----Q 255 (365)
T ss_dssp TTH-HHHHHHHH--H----HH-HHHHHHCS---SEE-----------------------------EESSCHHHH-----H
T ss_pred hHH-HHHHHHHH--H----HH-HHHHhccC---CEE-----------------------------EEeCCchHH-----H
Confidence 122 23333210 0 00 00000000 000 000000011 1
Q ss_pred cccCChhhhhHHHHHHHHh-cCCccceeec---CC------CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHh
Q 000971 321 IRGISGGERKRVTTGEMMV-GPALALFMDE---IS------TGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD 390 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~-~~~~vlllDE---pt------sgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~ 390 (1206)
...+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.++++ +.++. +..+
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~~-~~~r 333 (365)
T 1lw7_A 256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESPS-YLDR 333 (365)
T ss_dssp HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECSS-HHHH
T ss_pred HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCCC-HHHH
Confidence 1236677788888887775 5899999999 65 5889999999999988765533444444 55653 4445
Q ss_pred hcCeEEEE
Q 000971 391 LFDDIILL 398 (1206)
Q Consensus 391 ~fD~vilL 398 (1206)
++|.+.+|
T Consensus 334 ~~~~i~~i 341 (365)
T 1lw7_A 334 YNQVKAVI 341 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-14 Score=150.70 Aligned_cols=169 Identities=9% Similarity=0.051 Sum_probs=106.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcCCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVG 257 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~ 257 (1206)
|++++|+||||||||||+++|++. . .|.|.++|.++... ...++++|.+...+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~---~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ---L---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---S---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc---c---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 789999999999999999999983 2 68899998665332 234677776555556788888877543110
Q ss_pred chhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccC---cccccC--ChhhhhHH
Q 000971 258 SRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD---EMIRGI--SGGERKRV 332 (1206)
Q Consensus 258 ~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqkkRv 332 (1206)
.. +-....+...+. +..+.+ |+|+++++
T Consensus 71 ----------~~-------------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 ----------LA-------------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp ----------HT-------------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred ----------hc-------------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 00 000000000000 011234 89999998
Q ss_pred HHHH------HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC-chhHHhhcCeEEEEcCCeEEE
Q 000971 333 TTGE------MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQP-APETYDLFDDIILLSDGQIVY 405 (1206)
Q Consensus 333 sia~------~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~-~~~~~~~fD~vilL~~G~iv~ 405 (1206)
.++. +++.+++...+|+ +||+..... .+.++.+.. .+.+ ++...|. .+++.+.+|+|+ .+|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~-ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERY-FYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTS-EEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccE-EEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8777 8888888888884 899987777 777776532 3334 4445565 678889999998 9999999
Q ss_pred ecChHHH
Q 000971 406 QGPRELV 412 (1206)
Q Consensus 406 ~G~~~~~ 412 (1206)
.|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9987644
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-11 Score=124.63 Aligned_cols=91 Identities=22% Similarity=0.290 Sum_probs=69.6
Q ss_pred ccccCChhhhhHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 320 MIRGISGGERKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~----~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
.+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +.++|+ ++|. ..+...+|++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~iv-ith~-~~~~~~ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIV-ITLR-DVMMANADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSC-HHHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEE-EEec-HHHHHhCCEE
Confidence 35679999999999999996 56799999999999999999999999988753 345444 5555 3577899999
Q ss_pred EEE--cCCeE-EEecChHHHHH
Q 000971 396 ILL--SDGQI-VYQGPRELVLE 414 (1206)
Q Consensus 396 ilL--~~G~i-v~~G~~~~~~~ 414 (1206)
+.+ .+|.. +.....++..+
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHHH
Confidence 866 46643 34455554443
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-12 Score=137.90 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=88.4
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-ccceEEEecCCCCCCCCCCHHHHHHHHhh
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-PERTAAYISQHDNHIGEMTVRETLAFSAR 252 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~ 252 (1206)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... .++.++|++|... +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 33 799999987643221 1234678887643 46789999877543
Q ss_pred hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHH
Q 000971 253 CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332 (1206)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRv 332 (1206)
... ...... . ++.++..+++..... . +..+..+|+|++||+
T Consensus 78 ~~~------------~~~~~~--~----------------------~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYA------------KEGYFV--I----------------------LDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HHH------------HTSCEE--E----------------------ECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHH
T ss_pred HHh------------ccCCeE--E----------------------EeccCcHHHHHHHHh--c-CCCeEEEEecCCHHH
Confidence 110 000000 0 000000011111110 0 111235999999999
Q ss_pred HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 000971 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQ 368 (1206)
Q Consensus 333 sia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~ 368 (1206)
.++|++..+|+++ +|+.....+.+.++.
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 9999999999876 577766666665543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.4e-14 Score=167.28 Aligned_cols=163 Identities=10% Similarity=0.061 Sum_probs=97.8
Q ss_pred EeecceeeeeC--CeEEEEEccCCCcHHHHHhhhcCCCCCCeeE----EEEEEc----CccCC--cccccceEEEeecCC
Q 000971 856 LLNGLSGAFRP--GVLTALMGVSGAGKTTLMDVLSGRKTGGYIT----GNITIS----GYPKK--QETFARISGYCEQND 923 (1206)
Q Consensus 856 vL~~vs~~i~~--G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~----G~i~i~----g~~~~--~~~~~~~~gyv~q~~ 923 (1206)
+.+.|++.|++ |+.+||+||||||||||+++|+|...+ .. |++.++ |.+.. ...+ +.++|++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 35689999999 999999999999999999999997653 34 555553 21110 0001 1122222221
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCcEE
Q 000971 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSII 1002 (1206)
Q Consensus 924 ~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~-~~P~iL 1002 (1206)
..+ ..|+.||+.|. + .+..+.. ...+|+|++++..+++++. .+|+++
T Consensus 234 ~~~-~~t~~~nl~~~-------------------------~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDY-AVRHSHKIAFI-------------------------D-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHH-HHHHCSSEEEE-------------------------S-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHH-HHhccCCEEEE-------------------------e-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 100 01111111110 0 0000111 1135667778888888775 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 1003 FMDE---PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 1003 ~LDE---PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
|||| |+ +++|...+..+.+.|+++.+ .|.+||+++|. + +....+|++.+++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 68999999999999988754 48999999974 3 3555666666554
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-12 Score=139.45 Aligned_cols=157 Identities=19% Similarity=0.219 Sum_probs=87.6
Q ss_pred eecce-eeeeCCeEEEEEccCCCcHHHHHhhhcCC--CCC---CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000971 857 LNGLS-GAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTG---GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 930 (1206)
Q Consensus 857 L~~vs-~~i~~G~~~al~G~sGaGKSTLl~~L~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~T 930 (1206)
|+.+- +-+++|++++|+||||||||||+..|++. ..+ +...|.+++++.... .
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~ 71 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------R 71 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------C
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------C
Confidence 44433 67999999999999999999999999982 221 112466777664310 0
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH-HHHHHHHHh--hCCcEEEEeCC
Q 000971 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK-RLTIAVELV--ANPSIIFMDEP 1007 (1206)
Q Consensus 931 v~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq-rl~ia~aL~--~~P~iL~LDEP 1007 (1206)
..........+. ... +++++.+.+ ....+..+.. .+.-..+++ .+|++|++|||
T Consensus 72 ~~~~~~~~~~~g----~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 72 PERLLAVAERYG----LSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHcC----CCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 000000000010 111 112221110 0124444433 233344444 48999999999
Q ss_pred CCCCCHH-------H-----HHHHHHHHHHHHhC-CCEEEEEecCCchH------------------HHHhcCeEEEEec
Q 000971 1008 TSGLDAR-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPGID------------------IFDAFDELFLMKR 1056 (1206)
Q Consensus 1008 TsgLD~~-------~-----~~~i~~~l~~~~~~-g~tvi~~~H~p~~~------------------i~~~~d~v~ll~~ 1056 (1206)
|+.+|+. + ...+++.|++++++ |+|||+++|..... +...+|.+++|.+
T Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 129 TALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp SGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred hHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 9999975 3 34556666666554 99999999965421 1126899999987
Q ss_pred C
Q 000971 1057 G 1057 (1206)
Q Consensus 1057 g 1057 (1206)
+
T Consensus 209 ~ 209 (243)
T 1n0w_A 209 G 209 (243)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-15 Score=170.74 Aligned_cols=156 Identities=14% Similarity=0.079 Sum_probs=99.7
Q ss_pred eEEEEEccCCCcHHHHHhhhcCCCCC------CeeEEEEEEcCccCCcc------------------cccceEEEe---e
Q 000971 868 VLTALMGVSGAGKTTLMDVLSGRKTG------GYITGNITISGYPKKQE------------------TFARISGYC---E 920 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 920 (1206)
++++|+|+|||||||||+.|+|...+ ....|+|.|||.++... .+.+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999986421 12368888888764321 223345666 5
Q ss_pred cCCCCCCCCCHHHHHHHhh--hh-cCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhh
Q 000971 921 QNDIHSPFVTVYESLLYSA--WL-RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVA 997 (1206)
Q Consensus 921 q~~~~~~~~Tv~e~l~~~a--~l-r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~ 997 (1206)
|+..+.+..++.|++.++. .+ +.-...........++.++..+++.+..+... .+|+||+||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 6655555677777664321 00 00000000000111222333444444444432 589999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000971 998 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 998 ~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
+|+++ ||| ..+.+.|+++. .+.||++++|.+-
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 999 67888888874 5899999999864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-12 Score=149.97 Aligned_cols=122 Identities=18% Similarity=0.117 Sum_probs=86.7
Q ss_pred eecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEc-CccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 000971 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS-GYPKKQETFARISGYCEQNDIHSPFVTVYESL 935 (1206)
Q Consensus 857 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 935 (1206)
+++++.. .+|++++|+||||||||||+|+|+|.... +.+|+|.++ |.+.. ....+.+++++|+..++++.||+|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh-
Confidence 4556654 37999999999999999999999997640 247889887 65542 2345678999999888888899883
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 000971 936 LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVEL 995 (1206)
Q Consensus 936 ~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL 995 (1206)
. + ...+.++....+.++++.+++.++.+... .++| ||+||++||+++
T Consensus 282 --~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp --C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred --h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 1 13455566677889999999998888763 4799 999999999875
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-13 Score=136.38 Aligned_cols=78 Identities=19% Similarity=0.086 Sum_probs=65.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+++++|+.+++|++++|+||||||||||+++|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999999 76 899999997764211111 2899987777 89999
Q ss_pred HHHHH
Q 000971 245 ETLAF 249 (1206)
Q Consensus 245 Etl~f 249 (1206)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-11 Score=141.05 Aligned_cols=78 Identities=26% Similarity=0.349 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCe
Q 000971 978 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDE 1050 (1206)
Q Consensus 978 ~~~LSgGqrqrl------~ia~aL~~~-P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~ 1050 (1206)
+..|||||+||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. .+.+||+|+|+|. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999988 567888999 99999999999999999999999999864 3579999999985 5688999
Q ss_pred EEEEecCc
Q 000971 1051 LFLMKRGG 1058 (1206)
Q Consensus 1051 v~ll~~gg 1058 (1206)
+++|.+.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998644
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-11 Score=132.43 Aligned_cols=77 Identities=13% Similarity=0.026 Sum_probs=56.7
Q ss_pred CChhh--hhHHHHHHHHhcC-CccceeecCCCCCCHH--------HHHHHHHHHHHHHHhcCCeEEEEEecCch------
Q 000971 324 ISGGE--RKRVTTGEMMVGP-ALALFMDEISTGLDSS--------TTFQIVNCLKQHVHINSGTAVISLLQPAP------ 386 (1206)
Q Consensus 324 LSGGq--kkRvsia~~l~~~-~~vlllDEptsgLDs~--------t~~~i~~~L~~~~~~~~~t~vi~i~q~~~------ 386 (1206)
.++++ ++++..+++++.. |+++++||||+++|.. ....+++.|+++++..+.++|+ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 45554 5678888899875 9999999999999973 2345667788887655656555 556543
Q ss_pred -------hHHhhcCeEEEEcCC
Q 000971 387 -------ETYDLFDDIILLSDG 401 (1206)
Q Consensus 387 -------~~~~~fD~vilL~~G 401 (1206)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 467889999999754
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.3e-12 Score=146.80 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=56.3
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-ccceEEEec-CCCCC--CCCCC
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-PERTAAYIS-QHDNH--IGEMT 242 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 242 (1206)
+++++|+.+++|++++|+||||||||||+++|+|.++++ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 449999999999999999999999999999999999987 999999985311111 245688888 65432 23444
Q ss_pred HHHHHH
Q 000971 243 VRETLA 248 (1206)
Q Consensus 243 V~Etl~ 248 (1206)
++++|.
T Consensus 241 ~~~~i~ 246 (361)
T 2gza_A 241 AATLLR 246 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.4e-13 Score=139.65 Aligned_cols=112 Identities=19% Similarity=0.109 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC---c---c-ceEE----EecCCCCCCCCCCHHHHH
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---P---E-RTAA----YISQHDNHIGEMTVRETL 247 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~---~---~-~~~~----yv~Q~d~~~~~lTV~Etl 247 (1206)
++++|+||||||||||++.|+|.+++.....|.|.++|.++.+.. . + +.++ +++|+..+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998874334799999998865432 1 1 2355 788876544 000
Q ss_pred HHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChh
Q 000971 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327 (1206)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1206)
+ .. +. . ...+.+++. .|+ ..||.|++ +||||
T Consensus 77 -------~--~~-----~~-----~------------------------a~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--SE-----EE-----G------------------------NDLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--CH-----HH-----H------------------------TCHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--Ch-----hh-----h------------------------hCHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 00 00 0 001223333 023 46899997 59999
Q ss_pred hhhHHHHHHHHhcCCccc
Q 000971 328 ERKRVTTGEMMVGPALAL 345 (1206)
Q Consensus 328 qkkRvsia~~l~~~~~vl 345 (1206)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999874
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.2e-14 Score=154.54 Aligned_cols=147 Identities=15% Similarity=0.165 Sum_probs=96.3
Q ss_pred CCeEEEEEccCCCcHHHHHhhhc---CCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhh-
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL- 941 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~l- 941 (1206)
++++++|+||||||||||+++|+ |... +..|+|.++|.+... .....+++++|+..+.+..++.+++.....-
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999 8654 346777777654321 1223345566777778888999998763210
Q ss_pred -----cCCCCCCHHHHHHHHHHHHH--HcC------------CccccccccCCCCCCCCCHHHHHHHHHHHHH-hhCCcE
Q 000971 942 -----RLPPEVDSETRKMFIEEVME--LVE------------LKPLIQSLVGLPGVSGLSTEQRKRLTIAVEL-VANPSI 1001 (1206)
Q Consensus 942 -----r~~~~~~~~~~~~~v~~~l~--~l~------------L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL-~~~P~i 1001 (1206)
... ...... ..++.+.+ .++ +....++. +..||| |+ ++| +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCcc
Confidence 000 111111 11222221 122 11222332 235888 55 677 999999
Q ss_pred EEEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 000971 1002 IFMD----EPTSGLDARAAAIVMRTVRNTVDTG 1030 (1206)
Q Consensus 1002 L~LD----EPTsgLD~~~~~~i~~~l~~~~~~g 1030 (1206)
++|| |||+|||..+...+.+.|+++.+++
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999 9999999999999999999886553
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.2e-13 Score=146.46 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=95.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhh
Q 000971 177 PGRMTLLLGPPASGKTTLLLALA---GKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARC 253 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~La---G~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~ 253 (1206)
++++++|+||||||||||+++|+ |...++ .|+|.++|.+... ...+.+.++.|+..+++.+|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999 988775 7888887754321 1123345667777788889999999875321
Q ss_pred --------cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 254 --------QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 254 --------~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
.+...... +...... . ..++--+ +. . . -.+.+ +.... ++.+..+|
T Consensus 102 ~~~~~~il~g~~~~~~---~~~~l~~-~-~~~~~vi--~L-----~---~--~~~~~-----l~r~~-----~r~~~~lS 154 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLG---QAEALDK-I-CEVDLVI--SL-----N---I--PFETL-----KDRLS-----RRWIHPPS 154 (246)
T ss_dssp CTTSCEEEESCCCSHH---HHHHHHT-T-CCCCEEE--EE-----E---C--CHHHH-----HHHHH-----TEEEETTT
T ss_pred cCCCeEEEECCCCCHH---HHHHHHh-h-cCCCEEE--EE-----E---C--CHHHH-----HHHHH-----cCCCcCCC
Confidence 11000000 0000000 0 0000000 00 0 0 00000 11111 23344689
Q ss_pred hhhhhHHHHHHHH-hcCCccceee----cCCCCCCHHHHHHHHHHHHHHHH
Q 000971 326 GGERKRVTTGEMM-VGPALALFMD----EISTGLDSSTTFQIVNCLKQHVH 371 (1206)
Q Consensus 326 GGqkkRvsia~~l-~~~~~vlllD----EptsgLDs~t~~~i~~~L~~~~~ 371 (1206)
| || +++ +.+|++++|| |||+|||..+...+.+.|+.+..
T Consensus 155 g----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 155 G----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp T----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred C----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 8 66 667 9999999999 99999999999999998887654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.1e-12 Score=148.03 Aligned_cols=158 Identities=14% Similarity=0.105 Sum_probs=98.2
Q ss_pred eeceeeeEeCCeE--EEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC---CccceEEEecCCCCCCCCCC
Q 000971 168 LKDVSGIIKPGRM--TLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF---VPERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 168 L~~vs~~i~~G~~--~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~---~~~~~~~yv~Q~d~~~~~lT 242 (1206)
|++||+.+++|++ ++|+|||||||||||++|+|..- .| .++... ...+.++|++|++.+++.+|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g------~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EG------EPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cC------CcCCCCCccceEeeEEEEeecCccccccc
Confidence 9999999999999 99999999999999999999841 22 222111 12346899999988888999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc-CCcc----ccccc--
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLEV----CADTM-- 315 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~----~~dt~-- 315 (1206)
|.||+.|+.... .......+. .......+.+|... ++.. ..|+.
T Consensus 99 v~D~~~~g~~~~----~~~~~~~i~-------------------------~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQIN----KEDSYKPIV-------------------------EFIDAQFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CC----HHHHSHHHH-------------------------HHHHHHHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhccc----cchhhhHHH-------------------------HHHHHHHHHHHHHHHhhhhhhccccccccc
Confidence 999998754211 000000000 01111223334333 4431 12222
Q ss_pred --cc--CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 000971 316 --VG--DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQ 368 (1206)
Q Consensus 316 --vg--~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~ 368 (1206)
+. .+...+|+-.+ +.|+++|..+++|+++|||+..|.......+.+.+++
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 11 01113566665 7899999999999999999999999888888888876
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-12 Score=139.94 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=52.5
Q ss_pred HHHHHcCCcccccccccCcccccCChhhhhH-HHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 000971 301 YYLKVLGLEVCADTMVGDEMIRGISGGERKR-VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVH 371 (1206)
Q Consensus 301 ~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkR-vsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~ 371 (1206)
.+++..++... .|++. ...+|+||||| +..+++++.+|.++++|||||++|.....++++.|.++..
T Consensus 131 ~~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34555666532 22322 23589999999 8899999999999999999999999999999999987654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-12 Score=151.45 Aligned_cols=171 Identities=14% Similarity=0.133 Sum_probs=98.8
Q ss_pred eecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 000971 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 936 (1206)
Q Consensus 857 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 936 (1206)
-++|++.++.|+.++|+|+|||||||||++|+|... .+.+++... ....+|++.+++. ..+++.++.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 379999999999999999999999999999998642 234444321 2234566665531 1111111110
Q ss_pred HhhhhcCCCCCCHHHHH--HHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000971 937 YSAWLRLPPEVDSETRK--MFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014 (1206)
Q Consensus 937 ~~a~lr~~~~~~~~~~~--~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~ 1014 (1206)
+...............+ +.++.++..+++. +.. ...||+|++|++.+|++|+.+|.||++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000011111100 0111222222332 111 346999999999999999999999999 999987
Q ss_pred HHHHHHHHHHHH-HhCCCEEEEEecCCchHHHHhcCeEE
Q 000971 1015 AAAIVMRTVRNT-VDTGRTVVCTIHQPGIDIFDAFDELF 1052 (1206)
Q Consensus 1015 ~~~~i~~~l~~~-~~~g~tvi~~~H~p~~~i~~~~d~v~ 1052 (1206)
.+ ..++.+++. .+.|.+++.+|..-...+.++++.+.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 76 444444444 44577777655433334666665543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7.8e-12 Score=148.06 Aligned_cols=154 Identities=13% Similarity=0.128 Sum_probs=101.9
Q ss_pred eecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-------c--ccceEEEeecCCCCCC
Q 000971 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------T--FARISGYCEQNDIHSP 927 (1206)
Q Consensus 857 L~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~--~~~~~gyv~q~~~~~~ 927 (1206)
-++||+.+++|++++|+|+||||||||+++|+|.... ..|+|.++|.+.... . .++.++|++|+....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 3689999999999999999999999999999996542 258899987654321 1 2456899999988888
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCc-EEEEe
Q 000971 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPS-IIFMD 1005 (1206)
Q Consensus 928 ~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~-~~P~-iL~LD 1005 (1206)
..||++++.+... + ..+ .+ +++..|+.+... .+-..-+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~-~-~~D--------vV--LIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKA-R-NID--------VL--IADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHH-T-TCS--------EE--EECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHh-c-CCC--------EE--EEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8999999987532 1 100 00 112222211111 12224457888888764 4574 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 000971 1006 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1039 (1206)
Q Consensus 1006 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1039 (1206)
.||+|.|.. +.++.+.+ -|.|.|++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 588886654 22344432 48899999993
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-12 Score=130.36 Aligned_cols=78 Identities=23% Similarity=0.093 Sum_probs=64.6
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
+.++++||+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++......+ .|++|+..++ .+||.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999976 4 3799999998764321111 2789988778 899999
Q ss_pred HHHH
Q 000971 934 SLLY 937 (1206)
Q Consensus 934 ~l~~ 937 (1206)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.7e-11 Score=121.64 Aligned_cols=45 Identities=9% Similarity=0.163 Sum_probs=37.2
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q 000971 996 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQPG 1041 (1206)
Q Consensus 996 ~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~p~ 1041 (1206)
+.+|++|+||||++ +|...+..+.+.+..+.++|++ ||+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 56799999999998 5555588899999988877888 889999643
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-12 Score=152.50 Aligned_cols=167 Identities=15% Similarity=0.193 Sum_probs=100.7
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHH
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 246 (1206)
+|++++ +++|++++|+|||||||||||++|+|.+++. .+|.|.+.|.++. ...+..++||+|...-....+.+..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~g~~~~~~~~~ 201 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQREVGEDTKSFADA 201 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCSHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeeecCCCHHHHHHH
Confidence 577766 7999999999999999999999999998752 1699987776654 3344567899993211111223444
Q ss_pred HHHHhhhcCCCc-------hhhHhHHHHHHhhhcCC-----CCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC-------
Q 000971 247 LAFSARCQGVGS-------RYELLTELARRENEAGI-----KPDPDIDVYMKAIATEGQEANVITDYYLKVLG------- 307 (1206)
Q Consensus 247 l~f~~~~~~~~~-------~~~~~~~~~~~~~~~~i-----~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg------- 307 (1206)
|.-+.+. .+.- ..+....+.+.. ..+. ..+.+ .....+.++....
T Consensus 202 l~~~L~~-~pd~illdE~~d~e~~~~~l~~~-~~g~~vi~t~H~~~--------------~~~~~~rl~~l~~~~~~~~~ 265 (372)
T 2ewv_A 202 LRAALRE-DPDVIFVGEMRDLETVETALRAA-ETGHLVFGTLHTNT--------------AIDTIHRIVDIFPLNQQEQV 265 (372)
T ss_dssp HHHHTTS-CCSEEEESCCCSHHHHHHHHHHH-TTTCEEEECCCCCS--------------HHHHHHHHHHTSCTTSHHHH
T ss_pred HHHHhhh-CcCEEEECCCCCHHHHHHHHHHH-hcCCEEEEEECcch--------------HHHHHHHHHHhcCcccchhH
Confidence 4443332 1110 001111111100 0000 00001 1112233322211
Q ss_pred ---CcccccccccCcccccCChhhhhHHHHHHHHhcCCcc--ceeecCCCCCCHH
Q 000971 308 ---LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA--LFMDEISTGLDSS 357 (1206)
Q Consensus 308 ---L~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~v--lllDEptsgLDs~ 357 (1206)
|....+++|+.+.++ +||| ||++++|+++.+|.+ +++||.|+.||+.
T Consensus 266 ~~~l~~~l~~vv~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 266 RIVLSFILQGIISQRLLP-KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp HHHHHHSCCEEEEEEEEE-CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhhEEEEEEeEe-cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 345567788876654 6888 789999999999999 9999999999865
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=137.58 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEE
Q 000971 979 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~----~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll 1054 (1206)
..||||||||++||++|+ .+|++|+|||||++||+.....+.+.|+++.+.|.++|+|+|++ .+...+|+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 469999999999999999 57999999999999999999999999999866688999999995 467889999998
Q ss_pred ec
Q 000971 1055 KR 1056 (1206)
Q Consensus 1055 ~~ 1056 (1206)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 74
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-11 Score=141.23 Aligned_cols=121 Identities=19% Similarity=0.148 Sum_probs=79.9
Q ss_pred eeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CeeCCCCCccceEEEecCCCCCCCCCCHHH
Q 000971 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD-SSLKVSGRVTYN-GHDMGEFVPERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~-~~~~~~G~I~~n-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 4556654 4799999999999999999999999998 76 8999987 755432 22457899999988899999998
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
+ + +.+.. . .+......++++.+|+.+..|.... ++|
T Consensus 281 ~---~--l~~l~-~---------------------------------~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS 316 (358)
T 2rcn_A 281 F---G--LWHLE-P---------------------------------EQITQGFVEFHDYLGHCKYRDCKHD-----ADP 316 (358)
T ss_dssp C---C--CCCCC-H---------------------------------HHHHHTSGGGGGGTTCSSSTTCCSS-----SCT
T ss_pred h---h--hcCCC-H---------------------------------HHHHHHHHHHHHHcCCchhcCCCcc-----cCC
Confidence 4 1 11100 0 0011123446677888776665543 699
Q ss_pred hhhhhHHHHHHHH
Q 000971 326 GGERKRVTTGEMM 338 (1206)
Q Consensus 326 GGqkkRvsia~~l 338 (1206)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999765
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.2e-11 Score=130.16 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=27.5
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
+-+++|++++|+||||||||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999999999999999993
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.4e-13 Score=136.69 Aligned_cols=138 Identities=15% Similarity=0.205 Sum_probs=82.9
Q ss_pred eEEEEEccCCCcHHHHHhhhcCCCCC-CeeEEEEEEcCccCC------ccccc-ceEE----EeecCCCCCCCCCHHHHH
Q 000971 868 VLTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITISGYPKK------QETFA-RISG----YCEQNDIHSPFVTVYESL 935 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~q~~~~~~~~Tv~e~l 935 (1206)
++++|+|+||||||||+++|+|...+ +...|.|.++|.++. ...++ +.+| +++|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--------- 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--------- 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---------
Confidence 58999999999999999999996542 233799999998732 12333 3455 778765543
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHH-cCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEE-------EEeCC
Q 000971 936 LYSAWLRLPPEVDSETRKMFIEEVMEL-VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 1007 (1206)
Q Consensus 936 ~~~a~lr~~~~~~~~~~~~~v~~~l~~-l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL-------~LDEP 1007 (1206)
++. ...+ ....++++++. +. -.|..++. +||||||||++|||+++.+|+|. .-|.|
T Consensus 74 -----i~~---~~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 74 -----IRR---VSEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----EEE---CCHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----Eec---CChh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 110 0111 11134556655 43 24666654 59999999999999999998762 23444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 000971 1008 TSG---LDARAAAIVMRTVRNTVDTG 1030 (1206)
Q Consensus 1008 Tsg---LD~~~~~~i~~~l~~~~~~g 1030 (1206)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 23334456666665555554
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.3e-13 Score=152.71 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=96.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC--------CCCCCceeEEEECCeeCCCCCc------------------cceEEEe
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKL--------DSSLKVSGRVTYNGHDMGEFVP------------------ERTAAYI 231 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l--------~~~~~~~G~I~~nG~~~~~~~~------------------~~~~~yv 231 (1206)
=++++|+|+|||||||||+.|+|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 344 8999999988764421 1234555
Q ss_pred ---cCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCC
Q 000971 232 ---SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1206)
Q Consensus 232 ---~Q~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1206)
+|+..+++..+|.||..++... .....+.... .......++.++..+++
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~---------------------~~~~~~~l~~~l~~vd~ 132 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHE---------------------VLCQRYLLDGVIALVDA 132 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSH---------------------HHHHHEEEEEEEEEEET
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCc---------------------cccCeEEECCEEEEEEH
Confidence 4655555666777766543110 0000000000 00000001112223333
Q ss_pred cccccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH
Q 000971 309 EVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388 (1206)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~ 388 (1206)
.+..+... .+|||||||+..+++++..|+++ ||| ..+.+.|+++. .+ .+|+.++|...+.
T Consensus 133 ~~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~-~~ii~~sh~~~~~ 192 (318)
T 1nij_A 133 VHADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--AR-APVYTVTHGDIDL 192 (318)
T ss_dssp TTHHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SS-SCEEECCSSCCCG
T ss_pred HHHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CC-CeEEEecccCCCH
Confidence 33333221 58999999998889998999887 998 56777777753 33 4444455544344
Q ss_pred HhhcC
Q 000971 389 YDLFD 393 (1206)
Q Consensus 389 ~~~fD 393 (1206)
..++|
T Consensus 193 ~~l~~ 197 (318)
T 1nij_A 193 GLLFN 197 (318)
T ss_dssp GGGSC
T ss_pred HHHhC
Confidence 44443
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-12 Score=151.35 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=102.9
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cccceEEEeecCCCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TFARISGYCEQNDIHS 926 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~q~~~~~ 926 (1206)
..+|+++|+.+++|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... ..++.++|++|++..+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 3589999999999999999999999999999999986442 257888888665321 1345679999987766
Q ss_pred CCC------------CHHHHHHHh-----------------------------hhhcCCCCCCHHH-HHHHHHHHHHHcC
Q 000971 927 PFV------------TVYESLLYS-----------------------------AWLRLPPEVDSET-RKMFIEEVMELVE 964 (1206)
Q Consensus 927 ~~~------------Tv~e~l~~~-----------------------------a~lr~~~~~~~~~-~~~~v~~~l~~l~ 964 (1206)
+.. +++|.+... ..+..+...+..+ .+..+.+....+.
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv 199 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA 199 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE
Confidence 431 233332110 0000000000000 0000111111111
Q ss_pred CccccccccCCCCCCCCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000971 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027 (1206)
Q Consensus 965 L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~------~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~ 1027 (1206)
+ +..|.. ....+|+|++|++..|++++. +|++++ ||++|......+++.|.++.
T Consensus 200 l-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 200 V-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp E-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred E-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 1 111210 113579999999999999987 688887 99999999999999998764
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-11 Score=138.13 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=83.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQG 255 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~ 255 (1206)
+++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++. ++++|+.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCCh-HHHHHHhccccccc
Confidence 36789999999999999999999999864 22 0 12345666999988865 89999987631100
Q ss_pred CCchhhHhHHHHHHhhhcCCCCC-CChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc------cccCcccccCChhh
Q 000971 256 VGSRYELLTELARRENEAGIKPD-PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT------MVGDEMIRGISGGE 328 (1206)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~i~p~-~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------~vg~~~~~~LSGGq 328 (1206)
.-. ..+ .|+ -|.+ .....++.+.-. .+| .+. .+-..+||||
T Consensus 92 l~~-------------~~g-~p~a~d~~---------------~l~~~l~~l~~g--~~t~~~~~v~~p-~y~~~~sgGq 139 (290)
T 1odf_A 92 LLQ-------------GRG-LPGTHDMK---------------LLQEVLNTIFNN--NEHPDQDTVVLP-KYDKSQFKGE 139 (290)
T ss_dssp GGS-------------SSC-STTSBCHH---------------HHHHHHHHHTC--------CCEEEEC-CEETTHHHHT
T ss_pred hhh-------------hcc-CcchhHHH---------------HHHHHHHHhhcc--CccccCcceeec-cCccccCCcc
Confidence 000 000 011 1111 112233444221 111 122 2335799999
Q ss_pred hhHHHHH--HHHhcCCccceeecCCCCCCHHH
Q 000971 329 RKRVTTG--EMMVGPALALFMDEISTGLDSST 358 (1206)
Q Consensus 329 kkRvsia--~~l~~~~~vlllDEptsgLDs~t 358 (1206)
+||+.+| +++ +|+|+|+||++++||+..
T Consensus 140 ~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 140 GDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccccceEc--CCCEEEEeCccccCCccc
Confidence 9999987 555 899999999999999854
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=121.25 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=42.8
Q ss_pred HhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 000971 995 LVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042 (1206)
Q Consensus 995 L~~~P~iL~LDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~ 1042 (1206)
.+.+|++|+||||++ ++|+.....+.+++....++|+++|+|||.+..
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 356999999999995 999999999999999887789999999998854
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.7e-12 Score=142.50 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=94.7
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cccc--eEEEeecCCCCCCCCCHHHH
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TFAR--ISGYCEQNDIHSPFVTVYES 934 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~--~~gyv~q~~~~~~~~Tv~e~ 934 (1206)
.++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+++ .+.|++|...+.|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 478999999999999999999999996542 358899998875321 1122 24589999888899999999
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000971 935 LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014 (1206)
Q Consensus 935 l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~ 1014 (1206)
+.++..... +. + +++..|+.+..+. =.++.-.|++++..++.+++||.+| |.
T Consensus 204 l~~~~~~~~--d~--------v--liDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t-~~--- 255 (328)
T 3e70_C 204 IQHAKARGI--DV--------V--LIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALA-GN--- 255 (328)
T ss_dssp HHHHHHHTC--SE--------E--EEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGG-TT---
T ss_pred HHHHHhccc--hh--------h--HHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHH-HH---
Confidence 976532110 00 0 1111222211111 1223334889999888889999555 43
Q ss_pred HHHHHHHHHHHHH-hCCCEEEEEecCC
Q 000971 1015 AAAIVMRTVRNTV-DTGRTVVCTIHQP 1040 (1206)
Q Consensus 1015 ~~~~i~~~l~~~~-~~g~tvi~~~H~p 1040 (1206)
.+++.++.+. ..|.|+|++||..
T Consensus 256 ---~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 256 ---AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp ---HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred ---HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 4445555555 3489999999954
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.03 E-value=5.5e-11 Score=140.86 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=68.9
Q ss_pred eeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC---------ccceEEEecCCCCCC
Q 000971 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---------PERTAAYISQHDNHI 238 (1206)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~---------~~~~~~yv~Q~d~~~ 238 (1206)
-+++|+.+++|++++|+||||||||||+++|+|++.+. .|+|.++|.+..... .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999876 899999876653310 134689999998888
Q ss_pred CCCCHHHHHHHHh
Q 000971 239 GEMTVRETLAFSA 251 (1206)
Q Consensus 239 ~~lTV~Etl~f~~ 251 (1206)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999864
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.2e-11 Score=137.78 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=63.0
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---------cceEEEecCCCCCCCCCCHH
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---------ERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..++|++++|+||||||||||++.|+|.+.+. .|+|.++|.+...... +..+.|++|.....|.+||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 34789999999999999999999999999876 8999999988754322 12356999998899999999
Q ss_pred HHHHHHh
Q 000971 245 ETLAFSA 251 (1206)
Q Consensus 245 Etl~f~~ 251 (1206)
|++.++.
T Consensus 202 e~l~~~~ 208 (328)
T 3e70_C 202 DAIQHAK 208 (328)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-11 Score=137.49 Aligned_cols=128 Identities=14% Similarity=0.087 Sum_probs=84.2
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhh----h
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA----W 940 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a----~ 940 (1206)
+++.++||.|+||||||||.+.|++.... .| . . .+.+.+|+|++.+++ -++++++.+.. .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCC-hHHHHHHhccccccch
Confidence 57889999999999999999999985532 11 0 0 234556699998875 47888987752 1
Q ss_pred hc---CCCCCCHHHHHHHHHHHHHHcCCc--cc--cccccCCCCCCCCCHHHHHHHHHH--HHHhhCCcEEEEeCCCCCC
Q 000971 941 LR---LPPEVDSETRKMFIEEVMELVELK--PL--IQSLVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 1011 (1206)
Q Consensus 941 lr---~~~~~~~~~~~~~v~~~l~~l~L~--~~--~~~~~g~~~~~~LSgGqrqrl~ia--~aL~~~P~iL~LDEPTsgL 1011 (1206)
+. .|...+. ....+.++.+... .. ....+.. ....+||||+||+.+| +++ +|+|||+||||+++
T Consensus 93 ~~~~g~p~a~d~----~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHDM----KLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBCH----HHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhHH----HHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 1222222 2345566655432 00 0011110 1246999999999997 555 99999999999999
Q ss_pred CHHH
Q 000971 1012 DARA 1015 (1206)
Q Consensus 1012 D~~~ 1015 (1206)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9853
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-10 Score=133.65 Aligned_cols=156 Identities=21% Similarity=0.257 Sum_probs=90.0
Q ss_pred eecc-eeeeeCCeEEEEEccCCCcHHHHHhhh--cCCCC---CCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 000971 857 LNGL-SGAFRPGVLTALMGVSGAGKTTLMDVL--SGRKT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 930 (1206)
Q Consensus 857 L~~v-s~~i~~G~~~al~G~sGaGKSTLl~~L--~g~~~---~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~T 930 (1206)
|+.+ .+-|++|++++|+||||||||||+..| .+... ++.-.+.+++++.....
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~--------------------- 225 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR--------------------- 225 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------
Confidence 4443 368999999999999999999999954 44332 11123567777653210
Q ss_pred HHHHHH-HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCH-HHHHHHHHHHHHh--hCCcEEEEeC
Q 000971 931 VYESLL-YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDE 1006 (1206)
Q Consensus 931 v~e~l~-~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg-Gqrqrl~ia~aL~--~~P~iL~LDE 1006 (1206)
. +.+. ....+. ... +++++.+-+ . ...+. .+.+.+..+.+++ .+|++|++||
T Consensus 226 ~-~rl~~~a~~~g----l~~-------~~vleni~~--------~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs 281 (400)
T 3lda_A 226 P-VRLVSIAQRFG----LDP-------DDALNNVAY--------A----RAYNADHQLRLLDAAAQMMSESRFSLIVVDS 281 (400)
T ss_dssp H-HHHHHHHHHTT----CCH-------HHHHHTEEE--------E----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEET
T ss_pred H-HHHHHHHHHcC----CCh-------HhHhhcEEE--------e----ccCChHHHHHHHHHHHHHHHhcCCceEEecc
Confidence 0 0010 000010 111 112221111 0 01222 2334444444443 4699999999
Q ss_pred CCCCCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------hHHHHhcCeEEEEe
Q 000971 1007 PTSGLDARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPG------------------IDIFDAFDELFLMK 1055 (1206)
Q Consensus 1007 PTsgLD~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~p~------------------~~i~~~~d~v~ll~ 1055 (1206)
||+.+|.... ..+++.|++++++ |+|||+|+|..+ ..+...+|.++.|.
T Consensus 282 ~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~ 361 (400)
T 3lda_A 282 VMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFK 361 (400)
T ss_dssp GGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEE
T ss_pred hhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEE
Confidence 9999996433 5678888888765 999999999821 12456789999998
Q ss_pred cC
Q 000971 1056 RG 1057 (1206)
Q Consensus 1056 ~g 1057 (1206)
++
T Consensus 362 ~~ 363 (400)
T 3lda_A 362 KG 363 (400)
T ss_dssp EC
T ss_pred ec
Confidence 64
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-11 Score=145.27 Aligned_cols=170 Identities=12% Similarity=0.119 Sum_probs=98.4
Q ss_pred eeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHH
Q 000971 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247 (1206)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl 247 (1206)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+..... ..++++.+++ ...+++.|+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~--p~~G~V~~~~--~~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLS--PNLGVVEVSE--EERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSC--CEEEEEECSS--SCEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceec--ceeeEEEecC--cceEEEEecc
Confidence 379999999999999999999999999999999843 12333333222 2355555543 0111222221
Q ss_pred HH---HhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 248 AF---SARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 248 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
-+ +....+.... +.+. ...++.++..+++. +.....+
T Consensus 214 Gli~~a~~~~~L~~~------------------------fl~~--------~era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGLE------------------------FLRH--------IARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCHH------------------------HHHH--------HTSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhHH------------------------HHHH--------HHHHHhhhEEeCCc--------cCCHHHH
Confidence 11 0000010000 0000 00011223333332 2344579
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
|+|++||+.+|++|...|.++++ +++|.... ..++.+++.....+.+++.+..+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99998776 55555555444334455554444444455555443
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.8e-12 Score=145.70 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=108.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-------ccceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (1206)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.+. +|+|.+.|.+..... .++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35799999999999999999999999999999999998876 899999998774321 23568999999877
Q ss_pred CCCC---------C---HHHHHHHHhhhc--------CCCchhhHhHHHHHHhhhcCC---CCCC-ChHHHHHHHhhhhh
Q 000971 238 IGEM---------T---VRETLAFSARCQ--------GVGSRYELLTELARRENEAGI---KPDP-DIDVYMKAIATEGQ 293 (1206)
Q Consensus 238 ~~~l---------T---V~Etl~f~~~~~--------~~~~~~~~~~~~~~~~~~~~i---~p~~-d~~~~~~~~~~~~~ 293 (1206)
++.. | ++|.+.. .... .++-+.. +. ..+..++. .-++ ..+. .+.
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~-~~~~~~~~iliDT~Gi~~~---~~-~v~~~~d~vl~v~d~~~~~~-~~~------ 186 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLL-CEAAGFDVILVETVGVGQS---ET-AVADLTDFFLVLMLPGAGDE-LQG------ 186 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHH-HHHTTCCEEEEEECSSSSC---HH-HHHTTSSEEEEEECSCC-------------
T ss_pred ccccCcccccccchHHHHHHHHHH-HhcCCCCEEEEECCCCCcc---hh-hHHhhCCEEEEEEcCCCccc-HHH------
Confidence 7542 2 2333311 0000 0111000 00 00011110 0000 0000 000
Q ss_pred hHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHH
Q 000971 294 EANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLK 367 (1206)
Q Consensus 294 ~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~------~~~vlllDEptsgLDs~t~~~i~~~L~ 367 (1206)
.......+...+.+ +..|.. ....+|+|+++++..+.+++. .|++++ +|++|......+++.|.
T Consensus 187 -i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 187 -IKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp -CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHH
T ss_pred -HHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHH
Confidence 00001111222333 222211 123589999999999998887 577776 99999999999999887
Q ss_pred HHH
Q 000971 368 QHV 370 (1206)
Q Consensus 368 ~~~ 370 (1206)
+..
T Consensus 257 ~~~ 259 (337)
T 2qm8_A 257 DHR 259 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-11 Score=137.52 Aligned_cols=123 Identities=15% Similarity=0.212 Sum_probs=81.4
Q ss_pred eeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEE---cCccCCcc--ccc-ceEEEeecCCCCC-----CCCCH
Q 000971 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PFVTV 931 (1206)
Q Consensus 863 ~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~q~~~~~-----~~~Tv 931 (1206)
.+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|.+.... .+. +.+||++|++.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 6653 4799999 88765432 112 2479999998653 67899
Q ss_pred HHHH--HHhh---h-hcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 000971 932 YESL--LYSA---W-LRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVE 994 (1206)
Q Consensus 932 ~e~l--~~~a---~-lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqrqrl~ia~a 994 (1206)
|++ .|.. . .+...-....+....++++++.++|.+ ..+..+ ..|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 4531 0 111110111222345899999999986 666664 4699989999999874
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.95 E-value=7.6e-13 Score=160.01 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=103.0
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYES 934 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 934 (1206)
.+++++++.+++|+.++|+|||||||||||++|+|...+. .|.|.++|.+.-...-...++++.|........|..+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 4789999999999999999999999999999999977643 68899988652211112345566554432223455544
Q ss_pred HHHhhhhcCCC------CCCHHHHHH------------------HHHHHHHHcCCcc--ccccccC-C----CCCCCCCH
Q 000971 935 LLYSAWLRLPP------EVDSETRKM------------------FIEEVMELVELKP--LIQSLVG-L----PGVSGLST 983 (1206)
Q Consensus 935 l~~~a~lr~~~------~~~~~~~~~------------------~v~~~l~~l~L~~--~~~~~~g-~----~~~~~LSg 983 (1206)
+... +|+.. .+...+... .+.++++.+...+ ....++. . .....+|+
T Consensus 326 l~~~--LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 326 LRAA--LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHTT--GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHh--hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 4321 22111 111111110 1233333333211 0000000 0 00134799
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCchHHHHhc
Q 000971 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPGIDIFDAF 1048 (1206)
Q Consensus 984 Gqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~p~~~i~~~~ 1048 (1206)
||+||+++|. + | |+|||+.....+++.|.++...|+|+++ ++|+.+ ++...+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 9999877651 2 7 9999998776666666665555778775 778754 344433
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.3e-09 Score=125.27 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=73.0
Q ss_pred HHHHHHHcCCccc-------ccccccC----cccccCChhhhhHH------HHHHHHhcC-CccceeecCCCCCCHHHHH
Q 000971 299 TDYYLKVLGLEVC-------ADTMVGD----EMIRGISGGERKRV------TTGEMMVGP-ALALFMDEISTGLDSSTTF 360 (1206)
Q Consensus 299 ~~~~l~~lgL~~~-------~dt~vg~----~~~~~LSGGqkkRv------sia~~l~~~-~~vlllDEptsgLDs~t~~ 360 (1206)
++..++.+++.+. .+..+.+ ..+..+|||||||| ++|++++.+ |++++|||||+|||+.++.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~ 324 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRA 324 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHH
Confidence 4556777777651 1222222 34568999999998 557888999 9999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 361 QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 361 ~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
.+.+.|+++. .++++++ ++|.. ++...+|++++|+
T Consensus 325 ~l~~~l~~~~--~~~~vi~-~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 325 KLAEIFRKVK--SIPQMII-ITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHCC--SCSEEEE-EESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHhc--cCCeEEE-EEChH-HHHhhCCEEEEEE
Confidence 9999998753 2345554 55554 4788999999997
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.6e-12 Score=153.20 Aligned_cols=85 Identities=21% Similarity=0.163 Sum_probs=65.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
..+++++++.+++|+.++|+|||||||||||++|+|.++++ +|.|+++|.+--.......+.++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 34788999999999999999999999999999999999887 899999986522222234567777765433456788
Q ss_pred HHHHHHhh
Q 000971 245 ETLAFSAR 252 (1206)
Q Consensus 245 Etl~f~~~ 252 (1206)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 87765554
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-11 Score=142.08 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=90.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEe------
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYI------ 231 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv------ 231 (1206)
..+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++....+ .+.++|.
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4478887 4 4899999999999999999999999999876 8999999887742211 1223443
Q ss_pred ---cCCCCC--CCC----CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHH
Q 000971 232 ---SQHDNH--IGE----MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYY 302 (1206)
Q Consensus 232 ---~Q~d~~--~~~----lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~ 302 (1206)
.|++.. +++ .|+.+++.++..-+.+-.. + ...+ ....++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t------l----------h~~~--------------~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST------L----------HTNT--------------AVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE------E----------CCSS--------------SHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc------c----------chhh--------------HHHHHH-H
Confidence 377654 354 5888888775321100000 0 0000 001122 3
Q ss_pred HHHcCCcccccccccCcccccCChhhhhHHHHHHHHhcCCccce
Q 000971 303 LKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346 (1206)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vll 346 (1206)
|..+|++... ....|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5667876532 234699999999 9999999999865
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-10 Score=129.85 Aligned_cols=124 Identities=12% Similarity=0.092 Sum_probs=78.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCeeCCCCCcc---ceEEEecCCCCCC-----CCCCHH
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTY---NGHDMGEFVPE---RTAAYISQHDNHI-----GEMTVR 244 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~---nG~~~~~~~~~---~~~~yv~Q~d~~~-----~~lTV~ 244 (1206)
.+|++++|+||||||||||+|+|+ .+.+. +|+|.+ +|.+.+..... +.++|++|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 468999999999999999999999 88876 999999 89877643221 2479999987543 78999
Q ss_pred HHH--HHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc-cccccccCccc
Q 000971 245 ETL--AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADTMVGDEMI 321 (1206)
Q Consensus 245 Etl--~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~ 321 (1206)
|++ .|+. .. + .. |+. . +..+.. +....++.+++.+||.+ .++.. .
T Consensus 238 e~l~~~f~~-~~------~-~~--c~~-~--~~~~~~--------------e~~~~v~~~l~~~~L~~~~~~~~-----~ 285 (302)
T 2yv5_A 238 REVRNYFRE-FL------R-YQ--CKY-P--DCTHTN--------------EPGCAVKEAVKNGEISCERYKSY-----L 285 (302)
T ss_dssp GGGGGGCGG-GH------H-HH--HHS-T--TCCSSS--------------CTTCHHHHHHHTTSSCHHHHHHH-----H
T ss_pred HHHHHHHHH-HH------H-cc--CCC-C--CCCCCC--------------CCCCHHHHHHHcCCCCHHHHHHH-----H
Confidence 888 4431 00 0 00 110 0 000000 01123667888999975 55544 3
Q ss_pred ccCChhhhhHHHHHH
Q 000971 322 RGISGGERKRVTTGE 336 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~ 336 (1206)
+.|||.++|++.|||
T Consensus 286 ~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 286 KIIKVYLEEIKELCR 300 (302)
T ss_dssp HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 469998888898886
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.91 E-value=7.4e-10 Score=128.38 Aligned_cols=164 Identities=13% Similarity=0.009 Sum_probs=84.9
Q ss_pred EEEEccCCCcHHHHHhhhcC-CCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCC
Q 000971 870 TALMGVSGAGKTTLMDVLSG-RKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 947 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g-~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~ 947 (1206)
+.|.||||+|||||+++|++ ...+ ..|.+.++|.+.... .....+++++|.+.+..... + . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~--~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------M--GNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--h--------c--CCc
Confidence 89999999999999999998 3332 257888888654321 12345677877654311100 0 0 000
Q ss_pred CHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000971 948 DSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027 (1206)
Q Consensus 948 ~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~ 1027 (1206)
... .+.+.++.+......+... .||| +..+|+++|+|||++ ||..+...+.+++.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1333333332111111110 2465 788999999999999 99999999999998753
Q ss_pred hCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCCcchhHHHHHHHh
Q 000971 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEA 1079 (1206)
Q Consensus 1028 ~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~~~~~~~~~yf~~ 1079 (1206)
.++++|+++|+|+.-.-..-+| ...+.+.++.. .++..+...
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~~ 204 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILSD 204 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHHH
T ss_pred -CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHHH
Confidence 4789999999987311122222 24566666642 345555543
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4e-12 Score=149.77 Aligned_cols=133 Identities=15% Similarity=0.031 Sum_probs=89.9
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-------ccccceEEEee-------
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-------ETFARISGYCE------- 920 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~------- 920 (1206)
.+|+++ + .++|++++|+|||||||||||++|+|...+. .|.|.+.|.++.. ....+.+|+.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 478888 4 4899999999999999999999999965432 5888888876531 11223345544
Q ss_pred --cCCCC--CCC----CCHHHHHHHhhhhcC----CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHH
Q 000971 921 --QNDIH--SPF----VTVYESLLYSAWLRL----PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1206)
Q Consensus 921 --q~~~~--~~~----~Tv~e~l~~~a~lr~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqr 988 (1206)
|++.. .+. .|+.+++.++..-.. ....+.. . +.+.|..+++.+.. + ...|||||+||
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~---~-~i~rL~~lgl~~~~--~-----~~~LSgg~~QR 301 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV---G-AVTRLRDMGIEPFL--I-----SSSLLGVLAQR 301 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH---H-HHHHHHHHTCCHHH--H-----HHHEEEEEEEE
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH---H-HHHHHHHcCCcHHH--H-----HHHHHHHHHHH
Confidence 77654 233 589999877532110 0011111 1 23356778887653 2 24799999999
Q ss_pred HHHHHHHhhCCcEEEE
Q 000971 989 LTIAVELVANPSIIFM 1004 (1206)
Q Consensus 989 l~ia~aL~~~P~iL~L 1004 (1206)
||++|+.+|+++.-
T Consensus 302 --LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 --LVRTLCPDCKEPYE 315 (418)
T ss_dssp --EEEEECTTTCEEEE
T ss_pred --hhhhhcCCCCccCC
Confidence 99999999998763
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.86 E-value=5.5e-12 Score=146.96 Aligned_cols=169 Identities=16% Similarity=0.188 Sum_probs=115.4
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcC------------CCCCCCceeEEEECCeeCCC----CCccceE---EEecC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGK------------LDSSLKVSGRVTYNGHDMGE----FVPERTA---AYISQ 233 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~------------l~~~~~~~G~I~~nG~~~~~----~~~~~~~---~yv~Q 233 (1206)
+.+++|..++|+|+||||||||+++|+|. .+|+ .|.|.++|..+.. +.+++.+ .++.+
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD 91 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFD 91 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEe
Confidence 36688999999999999999999999993 2343 8999998843211 1223333 46778
Q ss_pred CCCCCCCCCHHHHH--HHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccc
Q 000971 234 HDNHIGEMTVRETL--AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVC 311 (1206)
Q Consensus 234 ~d~~~~~lTV~Etl--~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1206)
.+-+...++..|++ .|-+.++.. +.++..+...
T Consensus 92 ~pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~-- 126 (392)
T 1ni3_A 92 IAGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF-- 126 (392)
T ss_dssp TGGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC--
T ss_pred ccccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc--
Confidence 88777777776655 332222110 0011111111
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHH-HHhcCCeEEEEEecCchhH
Q 000971 312 ADTMVGDEMIRGISGGERKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLKQH-VHINSGTAVISLLQPAPET 388 (1206)
Q Consensus 312 ~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~--~vlllDEptsgLDs~t~~~i~~~L~~~-~~~~~~t~vi~i~q~~~~~ 388 (1206)
++..+..+||+. +| +++++|||+.++|.......++.++.. .. .+.| ++ .|...++
T Consensus 127 -----~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~t-i~--sh~~~~~ 185 (392)
T 1ni3_A 127 -----DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANT-LE--MKAKKEE 185 (392)
T ss_dssp -----CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCS-SS--HHHHHHH
T ss_pred -----ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCc-cc--cccHHHH
Confidence 122233467653 88 999999999999999999988888876 43 3333 33 6778889
Q ss_pred HhhcCeEE-EEcCC-eEEEecChH
Q 000971 389 YDLFDDII-LLSDG-QIVYQGPRE 410 (1206)
Q Consensus 389 ~~~fD~vi-lL~~G-~iv~~G~~~ 410 (1206)
.++||+|. +|.+| ++++.|+.+
T Consensus 186 ~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 186 QAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHHhccCCceeecCCCC
Confidence 99999999 99999 988877643
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=9.9e-10 Score=114.58 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=36.4
Q ss_pred hcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchh
Q 000971 339 VGPALALFMDEIST-GLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387 (1206)
Q Consensus 339 ~~~~~vlllDEpts-gLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~ 387 (1206)
+.+|++|+||||++ ++|......+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34889999999985 9999998888888876543 456777766655443
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-11 Score=138.82 Aligned_cols=142 Identities=16% Similarity=0.187 Sum_probs=94.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCC-CCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHD-NHIGE 240 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1206)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45899999999999 999999999999999999998763 789999977643321 13456666653 34555
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+++.|++.+....++ .... + .+.... +..
T Consensus 106 i~~~Deid~~~~~r~--------------~~~~--------------------------~------~~~~~~-----~~~ 134 (274)
T 2x8a_A 106 VIFFDEVDALCPRRS--------------DRET--------------------------G------ASVRVV-----NQL 134 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHH-----HHH
T ss_pred eEeeehhhhhhcccC--------------CCcc--------------------------h------HHHHHH-----HHH
Confidence 566666554211000 0000 0 000111 122
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCC------------CCCHHHHHHHHHHH
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEIST------------GLDSSTTFQIVNCL 366 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEpts------------gLDs~t~~~i~~~L 366 (1206)
...|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 3369999999999999999999975 98864 23677777776644
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-11 Score=131.37 Aligned_cols=148 Identities=13% Similarity=0.095 Sum_probs=79.6
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCC-CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhc
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLR 942 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr 942 (1206)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|...... ..+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~--------------------~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR--------------------LLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHH--------------------HHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHH--------------------HHHHhcccccCC
Confidence 579999999999999999999999996542 22345666665443211 111110000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHH-HHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 000971 943 LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 1021 (1206)
Q Consensus 943 ~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia-~aL~~~P~iL~LDEPTsgLD~~~~~~i~~ 1021 (1206)
.+...+... ..+.+..+...+..+...... ..++|+||+||+++| +.++.++.++++|||.. .
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~ 142 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R 142 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H
Confidence 011111111 222333222121122222221 235899999999987 77788888777888741 1
Q ss_pred HHHHHHhCCCEEEEEecCCchHHHHhcCe
Q 000971 1022 TVRNTVDTGRTVVCTIHQPGIDIFDAFDE 1050 (1206)
Q Consensus 1022 ~l~~~~~~g~tvi~~~H~p~~~i~~~~d~ 1050 (1206)
.++.. --.+|++.+.....+.....|
T Consensus 143 ~l~~~---~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 143 DLTAI---WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGGT---CSEEEEECCCHHHHHHHHHHH
T ss_pred HHHHh---cCEEEEEeCCHHHHHHHHHHH
Confidence 11222 236777777765434455555
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.83 E-value=7e-11 Score=126.56 Aligned_cols=121 Identities=19% Similarity=0.158 Sum_probs=71.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhc
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQ 254 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~ 254 (1206)
.++|++++|+||||||||||+++|+|.+++. | ..+++|++++.++.. +..+++.... .+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~-~~ 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G---------------LPAEVVPMDGFHLDN-RLLEPRGLLP-RK 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T---------------CCEEEEESGGGBCCH-HHHGGGTCGG-GT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C---------------CceEEEecCCCcCCH-HHHHHhcccc-cC
Confidence 4789999999999999999999999998752 2 135666666554432 2222211000 00
Q ss_pred CCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHH
Q 000971 255 GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334 (1206)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsi 334 (1206)
+.... .|.+. ....+..+......++.+++... +.||||+||+++
T Consensus 78 ~~~~~-------------------~~~~~---------------~~~~l~~l~~~~~i~~p~~d~~~-~~~~g~~~~v~~ 122 (208)
T 3c8u_A 78 GAPET-------------------FDFEG---------------FQRLCHALKHQERVIYPLFDRAR-DIAIAGAAEVGP 122 (208)
T ss_dssp TSGGG-------------------BCHHH---------------HHHHHHHHHHCSCEEEEEEETTT-TEEEEEEEEECT
T ss_pred CCCch-------------------hhHHH---------------HHHHHHHHhcCCceecccCCccc-cCCCCCceEEcC
Confidence 00000 01000 01111111111222344555444 589999999999
Q ss_pred H-HHHhcCCccceeecCC
Q 000971 335 G-EMMVGPALALFMDEIS 351 (1206)
Q Consensus 335 a-~~l~~~~~vlllDEpt 351 (1206)
+ ++++.++.++++|||.
T Consensus 123 ~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 123 ECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TCCEEEEEESSTTBCSTT
T ss_pred CCcEEEECCceeccCCch
Confidence 8 8888888888899984
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=5.7e-12 Score=146.81 Aligned_cols=172 Identities=10% Similarity=0.085 Sum_probs=116.2
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCC----------CCCeeEEEEEEcCccCCc----ccccce---EEEeecCCC
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRK----------TGGYITGNITISGYPKKQ----ETFARI---SGYCEQNDI 924 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~---~gyv~q~~~ 924 (1206)
+.+++|..++|+|+||||||||+|+|+|.. +-.+..|.+.++|..... ...++. ..++.+.+.
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 367899999999999999999999999932 112457999998843211 001122 246777777
Q ss_pred CCCCCCHHHHH--HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC--c
Q 000971 925 HSPFVTVYESL--LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP--S 1000 (1206)
Q Consensus 925 ~~~~~Tv~e~l--~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P--~ 1000 (1206)
+.+..+..|.+ .|-+.++.. +.++..++..+ + ..+..++++. +| +
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d-----~~i~~v~~~~------------dP~~d 143 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--D-----AEIIHVEGDV------------DPIRD 143 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--T-----TCSSCCSSSS------------CHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--c-----ceeeeecccc------------Ccchh
Confidence 77777766655 443333311 11111111111 1 1122345442 89 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHHhcCeEE-EEecCc-EEEEEcCCCc
Q 000971 1001 IIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPGIDIFDAFDELF-LMKRGG-QEIYVGPLGR 1068 (1206)
Q Consensus 1001 iL~LDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~p~~~i~~~~d~v~-ll~~gg-~~~~~g~~~~ 1068 (1206)
++++|||+.++|+......++.++.+ .+.|.||+ +|... ++.+.||++. +|.+ | +.++.|+..+
T Consensus 144 i~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~~ 210 (392)
T 1ni3_A 144 LSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCCH
T ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCCH
Confidence 99999999999999999999999888 66688865 99876 6788999999 8875 6 7787787653
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-12 Score=138.96 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=42.9
Q ss_pred HHH-HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 334 ia~-~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| .. ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~---~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK---EP-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG---ST-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh---cc-CCceEEEECCC
Confidence 455 7889999999999999999999999999887765421 1122 11 67899988764
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.3e-09 Score=125.63 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=42.7
Q ss_pred cCCccceeecCCCCCCHHHH------------HHHHHHHHHHHHhcCCeEEEEEecCc-------------------hhH
Q 000971 340 GPALALFMDEISTGLDSSTT------------FQIVNCLKQHVHINSGTAVISLLQPA-------------------PET 388 (1206)
Q Consensus 340 ~~~~vlllDEptsgLDs~t~------------~~i~~~L~~~~~~~~~t~vi~i~q~~-------------------~~~ 388 (1206)
.+|+++++|||++.+|+... .++++.|+++++..+.++|+ ++|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl-v~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV-TNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EEeecccCCccccccCCCccCCchhHH
Confidence 47999999999999997543 56778888888766656555 44541 224
Q ss_pred HhhcCeEEEEcCCe
Q 000971 389 YDLFDDIILLSDGQ 402 (1206)
Q Consensus 389 ~~~fD~vilL~~G~ 402 (1206)
.+.+|.++.|..|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999887653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-09 Score=119.66 Aligned_cols=68 Identities=12% Similarity=0.165 Sum_probs=46.8
Q ss_pred HHHHHHHh--hCCcEEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCCEEEEEecCCchH-------HHHhcCeEEEEec
Q 000971 989 LTIAVELV--ANPSIIFMDEPTSGL--DARAAAIVMRTVRNT-VDTGRTVVCTIHQPGID-------IFDAFDELFLMKR 1056 (1206)
Q Consensus 989 l~ia~aL~--~~P~iL~LDEPTsgL--D~~~~~~i~~~l~~~-~~~g~tvi~~~H~p~~~-------i~~~~d~v~ll~~ 1056 (1206)
+..+..++ .+|+++++|+|++.+ |......++..|.++ .+.|+|||+++|..... +.+.+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 579999999999988 554444555555554 45699999999986521 4567899999975
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-12 Score=138.20 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=42.6
Q ss_pred HHH-HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 991 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 991 ia~-aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
+++ +++.+|++++|||+|+++|..+...|.+.|.++... +...|.+ ..||.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 677888888899999999999999999988876542 2335632 4689988775
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-09 Score=123.72 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=67.0
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEE---cCccCCcc-cccce-EEEeecCCCCCC----CCCHH
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITI---SGYPKKQE-TFARI-SGYCEQNDIHSP----FVTVY 932 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~q~~~~~~----~~Tv~ 932 (1206)
+.+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|...... ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5678999999999999999999999999765 34789988 77654321 12222 699999987755 6889
Q ss_pred HHHH--Hhhh------hcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 933 ESLL--YSAW------LRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 933 e~l~--~~a~------lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
|++. |... .+...-....+....++++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 3211 111110011122345899999999986433221 246677766
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-10 Score=128.96 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=59.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEE---CCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHH
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTY---NGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFS 250 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~---nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~ 250 (1206)
++|++++|+||||||||||+++|+|.+. ++ +|+|.+ +|..... ...+.++|+ |...+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8899999999999999999999999887 66 899999 8866421 112456788 777778899999999886
Q ss_pred hhh
Q 000971 251 ARC 253 (1206)
Q Consensus 251 ~~~ 253 (1206)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.71 E-value=8.6e-09 Score=104.16 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=29.7
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
.+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 355665 8999999999999999999999998764
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.70 E-value=7.4e-10 Score=125.56 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=51.5
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCeeCCCCCcc---ceEEEecCCCC-----------
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTY---NGHDMGEFVPE---RTAAYISQHDN----------- 236 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~---nG~~~~~~~~~---~~~~yv~Q~d~----------- 236 (1206)
.+.+|++++|+|||||||||||++|+|...++ +|+|.+ +|.++...... +.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 45579999999999999999999999999987 999999 89877643321 35789999864
Q ss_pred -----CCCCCCHHHHHHHH
Q 000971 237 -----HIGEMTVRETLAFS 250 (1206)
Q Consensus 237 -----~~~~lTV~Etl~f~ 250 (1206)
+||++|| ||+.|+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5889999 888875
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.69 E-value=5.4e-10 Score=126.67 Aligned_cols=102 Identities=15% Similarity=0.223 Sum_probs=65.7
Q ss_pred eeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEE---cCccCCccc--c-cceEEEeecCCC------------
Q 000971 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITI---SGYPKKQET--F-ARISGYCEQNDI------------ 924 (1206)
Q Consensus 863 ~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~gyv~q~~~------------ 924 (1206)
.+.+|++++|+||||||||||+|+|+|...+ .+|+|.+ +|.+..... + .+.+||++|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~--~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCC--C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccc--cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 4557999999999999999999999997764 4799999 887654211 1 134799999874
Q ss_pred ----CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccc
Q 000971 925 ----HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLV 973 (1206)
Q Consensus 925 ----~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~ 973 (1206)
++|.+|+ ||+.|... .. ..+....+.++|+.++|. +..+..+
T Consensus 243 ~~~~l~~~~~~-~n~~~~~~-~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSDC-NH-----VDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTTC-CS-----SSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCCC-cC-----CCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4788888 88887531 11 112234589999999995 6666653
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-08 Score=120.77 Aligned_cols=179 Identities=13% Similarity=0.130 Sum_probs=108.8
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEE-EEEEcCccCCcccc-cceEEEeecCCCCCCCCCHH
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITG-NITISGYPKKQETF-ARISGYCEQNDIHSPFVTVY 932 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~-~~~~gyv~q~~~~~~~~Tv~ 932 (1206)
..|+++++-+++|+++.|.|++|+|||||+..+++..... .| .+.+.+........ .|..+... ....
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEG-------NINA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH-
Confidence 3688899899999999999999999999999888642210 12 23332222111110 01000000 0000
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCC
Q 000971 933 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSG 1010 (1206)
Q Consensus 933 e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~--~~P~iL~LDEPTsg 1010 (1206)
+. ++. .....++ ...+.++++.++..++.-.. ..++|.+|.+ ..++.++ .+|+++++|+++.-
T Consensus 261 ~~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QN------LRT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HH------HHT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HH------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 01 111 1222222 33455666666544432211 2368999986 5667776 68999999999987
Q ss_pred CC--------HHHHHHHHHHHHHHHhC-CCEEEEEec---------C--Cch-------HHHHhcCeEEEEecCc
Q 000971 1011 LD--------ARAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PGI-------DIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 1011 LD--------~~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--p~~-------~i~~~~d~v~ll~~gg 1058 (1206)
.+ ......+.+.|+.++++ |++||+++| + |.. .+...+|.|++|.++.
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 74 23446778888888755 999999999 2 531 3667899999998753
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-10 Score=129.49 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=85.4
Q ss_pred EEeecceeee-------------------eCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEE---cCccCCcccc
Q 000971 855 VLLNGLSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITI---SGYPKKQETF 912 (1206)
Q Consensus 855 ~vL~~vs~~i-------------------~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~~ 912 (1206)
.++++|++.+ ++|+++||+||||||||||+++|+|.....+..|+|.+ ||...... .
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-V 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-H
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-H
Confidence 3788899888 89999999999999999999999995430012688988 88765432 2
Q ss_pred cceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHH
Q 000971 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIA 992 (1206)
Q Consensus 913 ~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia 992 (1206)
++.+|++ |...+++.+|+.+++.+...++.... .+ ..+..+. +.+ +|+..+
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~---------------~i-~~P~~~~----------~~~--~~~~~~ 178 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP---------------NV-TAPVYSH----------LIY--DVIPDG 178 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS---------------CE-EECCEET----------TTT--EECTTC
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC---------------ce-ecccccc----------ccc--Cccccc
Confidence 3446788 77777788999999987655542211 00 0011111 111 222222
Q ss_pred HHHhhCCcEEEEeCCCCCCCH
Q 000971 993 VELVANPSIIFMDEPTSGLDA 1013 (1206)
Q Consensus 993 ~aL~~~P~iL~LDEPTsgLD~ 1013 (1206)
.+.+.+|+++|+|.|....+.
T Consensus 179 ~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 179 DKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CEEEC-CCEEEEECTTTTCCG
T ss_pred ceecCCCCEEEECchhhCCCc
Confidence 244567899999999988773
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-08 Score=117.28 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=66.7
Q ss_pred EEEEcCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 000971 181 TLLLGPPASGKTTLLLALAG-KLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGS 258 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG-~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~~~~ 258 (1206)
++|.||||+|||||+++|+| .+.+. .|.|.++|.+...... ...++|++|.+.+..... + .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCcc
Confidence 89999999999999999999 56665 7999999876643221 345778888653311100 0 00000
Q ss_pred hhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHHHHH
Q 000971 259 RYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338 (1206)
Q Consensus 259 ~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l 338 (1206)
+ . .....++.+.+..++.. . . .+|| +
T Consensus 106 ~-~--------------------------------~~~~~i~~~~~~~~~~~----~-----~-~ls~-----------l 131 (354)
T 1sxj_E 106 R-I--------------------------------VIQELLKEVAQMEQVDF----Q-----D-SKDG-----------L 131 (354)
T ss_dssp H-H--------------------------------HHHHHHHHHTTTTC-------------------------------
T ss_pred h-H--------------------------------HHHHHHHHHHHhccccc----c-----c-cccc-----------c
Confidence 0 0 00001111111111111 0 0 3566 7
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 000971 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386 (1206)
Q Consensus 339 ~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~ 386 (1206)
.++|+|+++|||++ ||..+...+.+.|.+.. .++++|.++|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCEEEEEeCCHH
Confidence 78999999999999 99999999999988753 3455555555543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-10 Score=132.94 Aligned_cols=154 Identities=22% Similarity=0.237 Sum_probs=93.9
Q ss_pred ceEeeceeeeEeCC-------eEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCeeCCCC---CccceEEEecC
Q 000971 165 LTILKDVSGIIKPG-------RMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGEF---VPERTAAYISQ 233 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G-------~~~~ilGp~GsGKSTLL~~LaG~l~~~~-~~~G~I~~nG~~~~~~---~~~~~~~yv~Q 233 (1206)
..+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34677788888776 8899999999999999999999874321 1356665555443211 11346899999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccc
Q 000971 234 HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCAD 313 (1206)
Q Consensus 234 ~d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1206)
.+.+.+ ++.|+|.......+.. ... .. + .....++..+..++|.. +.
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~----i~~--~~----------~--------------~~~~~i~~~l~~~~li~-at 157 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQID----IMI--GK----------G--------------PSAKSIRIDIQPFTLVG-AT 157 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCC----C-----------------------------------------CCCEEEE-EE
T ss_pred hhhcCH--HHHHHHHHHHHhcccc----eee--cc----------C--------------cccccccccCCCeEEEE-ec
Confidence 876654 7888885433211100 000 00 0 00011223344455544 45
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh
Q 000971 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372 (1206)
Q Consensus 314 t~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~ 372 (1206)
+.++ .||+|+|+|+.++ .+||+.+..++.+.|++.+..
T Consensus 158 ~~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 158 TRSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp SCGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHH
T ss_pred CCcc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHH
Confidence 5443 6999999998544 678888888888888877654
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-11 Score=135.96 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=86.9
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCC-CCCCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFV 929 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~-~~~~~~ 929 (1206)
..+++++++.+++| ++|+||||+|||||+++|+|.... |.|.++|.++... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 35899999999999 999999999999999999996542 6889999765321 1233466777764 345666
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000971 930 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1009 (1206)
Q Consensus 930 Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTs 1009 (1206)
++.|++.+.+..+. .. ... .+....+.++ ..|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~-----~~----~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRS-----DR----ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccC-----CC----cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 66666643221110 00 000 1223334432 369999999999999999999975 88753
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-10 Score=131.20 Aligned_cols=150 Identities=16% Similarity=0.075 Sum_probs=92.5
Q ss_pred eEEeecceeeeeCC-------eEEEEEccCCCcHHHHHhhhcCCCCC--CeeEEEEEEcCccCCc---ccccceEEEeec
Q 000971 854 LVLLNGLSGAFRPG-------VLTALMGVSGAGKTTLMDVLSGRKTG--GYITGNITISGYPKKQ---ETFARISGYCEQ 921 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G-------~~~al~G~sGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv~q 921 (1206)
..+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.+... ...++.++|+.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35788999999877 89999999999999999999985421 1334555444433211 111346889998
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCCC--CHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000971 922 NDIHSPFVTVYESLLYSAWLRLPPEV--DSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 999 (1206)
Q Consensus 922 ~~~~~~~~Tv~e~l~~~a~lr~~~~~--~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P 999 (1206)
.+.+.+ ++.|++....... ..+. ........+.+.++.++|.. +.+. ...||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred hhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 877665 7888875332111 1010 01111223444555555544 3333 246999999998654
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000971 1000 SIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028 (1206)
Q Consensus 1000 ~iL~LDEPTsgLD~~~~~~i~~~l~~~~~ 1028 (1206)
.+||+.+...+.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 77888888899999988764
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.53 E-value=3.2e-08 Score=111.89 Aligned_cols=112 Identities=18% Similarity=0.206 Sum_probs=74.5
Q ss_pred ceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhh
Q 000971 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 939 (1206)
Q Consensus 860 vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a 939 (1206)
+++..++|++++|+|||||||||++..|++.... ..|+|.+.+.+.... ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~-------------------~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA-------------------AAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH-------------------HHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH-------------------HHHH------
Confidence 4566789999999999999999999999985431 124566554332100 0011
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHH---HHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000971 940 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1016 (1206)
Q Consensus 940 ~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl---~ia~aL~~~P~iL~LDEPTsgLD~~~~ 1016 (1206)
.+..+.+.+++.. ....|+|+.+++ +|++++..+|+++|+|||.. ....
T Consensus 150 ---------------qL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 150 ---------------QLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ---------------HHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ---------------HHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1223444555542 124688999999 89999999999999999974 2334
Q ss_pred HHHHHHHHHH
Q 000971 1017 AIVMRTVRNT 1026 (1206)
Q Consensus 1017 ~~i~~~l~~~ 1026 (1206)
..+++.|+++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.6e-07 Score=104.17 Aligned_cols=118 Identities=19% Similarity=0.107 Sum_probs=80.0
Q ss_pred ecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHH
Q 000971 858 NGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLY 937 (1206)
Q Consensus 858 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~ 937 (1206)
+++++. +|++++|+|+||+||||++..|++.... ..|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHh------------------HH-HHH--
Confidence 678888 9999999999999999999999985431 1356777665432110 00 000
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC-CCCCCHHHH
Q 000971 938 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1016 (1206)
Q Consensus 938 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEP-TsgLD~~~~ 1016 (1206)
..+.+..++.-+.. + ...+-.+.+|..|+.+...+++++|+||| ++|+|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 11223345443211 0 12344566788999988899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 000971 1017 AIVMRTVRNT 1026 (1206)
Q Consensus 1017 ~~i~~~l~~~ 1026 (1206)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8877776654
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-08 Score=120.76 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=48.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~ 221 (1206)
..+|+|+|+.|++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 4579999999999 999999999999999999999999987 9999999987654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-07 Score=107.94 Aligned_cols=78 Identities=19% Similarity=0.180 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhC--CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCch-----
Q 000971 987 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPGI----- 1042 (1206)
Q Consensus 987 qrl~ia~aL~~~--P~iL~LDEPTsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~p~~----- 1042 (1206)
+-+.++++++.+ |++|++|||++.+ |+ ..++.+.+.++++ .+.|+|||++.|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223444555554 3459999999996431
Q ss_pred ----------HHHHhcCeEEEEecCcEEEEEcC
Q 000971 1043 ----------DIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 1043 ----------~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 14467888888876 44444443
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-07 Score=107.70 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=76.8
Q ss_pred eeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHH
Q 000971 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFS 250 (1206)
Q Consensus 171 vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~ 250 (1206)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. +. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 45567899999999999999999999999998764 567776654321 00 000111
Q ss_pred hhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhh
Q 000971 251 ARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERK 330 (1206)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkk 330 (1206)
..+++.+|++. +...|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE----------ECCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE----------EecCCccCHH
Confidence 11233455542 1246899999
Q ss_pred HH---HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHH
Q 000971 331 RV---TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQH 369 (1206)
Q Consensus 331 Rv---sia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~ 369 (1206)
++ ++++++..+++++++|+|.. ......+++.|+.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 99 89999999999999999974 33444555555544
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.45 E-value=7e-09 Score=128.91 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=98.8
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCC---------
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHD--------- 235 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d--------- 235 (1206)
..++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+... ..++|+++..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHHH
Confidence 45789999999999999999999999999999999999875 2488999887766543 3588888752
Q ss_pred -------------CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHH
Q 000971 236 -------------NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYY 302 (1206)
Q Consensus 236 -------------~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~ 302 (1206)
..++.+++.+|+.... |. ..+.+-+.. . ....
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~--------------------~~~~~~v~~-------~-------~~~~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDN-CG--------------------RTKAPFIDA-------T-------GAHA 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECC-TT--------------------CSSCCEEEC-------T-------TCCH
T ss_pred Hhhccchhhhhhcccccccccccceeecc-cc--------------------CCCCCEEEc-------C-------CCCH
Confidence 1111111111111000 00 000000000 0 0001
Q ss_pred HHHcCCcccccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 000971 303 LKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQ 368 (1206)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~ 368 (1206)
.+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 12223211111 1123699999999999999999999999999998 898877777776653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.45 E-value=5e-07 Score=98.50 Aligned_cols=60 Identities=20% Similarity=0.110 Sum_probs=42.1
Q ss_pred cCCccceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecCchh--------HHhhcCeEEEEcC
Q 000971 340 GPALALFMDEISTGL--DSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE--------TYDLFDDIILLSD 400 (1206)
Q Consensus 340 ~~~~vlllDEptsgL--Ds~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~--------~~~~fD~vilL~~ 400 (1206)
.+|+++++|++++.+ |.....+++..|.+.++..+.++++ ++|...+ +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 478999999999988 6555566777777776655555555 5555443 4677899999864
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.43 E-value=6.1e-08 Score=109.30 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=44.6
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCeeCCCCCcc-ce-EEEecCCCCCCC----CCCH
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTY---NGHDMGEFVPE-RT-AAYISQHDNHIG----EMTV 243 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~---nG~~~~~~~~~-~~-~~yv~Q~d~~~~----~lTV 243 (1206)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+..... +. .+|+.|++.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 456689999999999999999999999998876 899998 88766543221 22 689999987655 6899
Q ss_pred HHHHH
Q 000971 244 RETLA 248 (1206)
Q Consensus 244 ~Etl~ 248 (1206)
|+|.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 9983
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.9e-07 Score=103.73 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=88.3
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP 944 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~ 944 (1206)
++|++++|+||||+||||++..|++..... .| +.+.++.++.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 479999999999999999999999854310 12 12455555442 234555554321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 000971 945 PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024 (1206)
Q Consensus 945 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~ 1024 (1206)
+..++... ...+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11222111 01122 22344444 45999999999 99999876655554443
Q ss_pred HHH---hCCCEEEE-EecCCchHHHHhcCeEEEEecCcEEEEEcCC-CcchhHHHHHHHhC
Q 000971 1025 NTV---DTGRTVVC-TIHQPGIDIFDAFDELFLMKRGGQEIYVGPL-GRHSCQLISYFEAI 1080 (1206)
Q Consensus 1025 ~~~---~~g~tvi~-~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~-~~~~~~~~~yf~~~ 1080 (1206)
-+. ..+.++|+ ++|.+. ++.+.++++..+..+| ++..--- ......+++.....
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVltk~D~~~~~g~~~~~~~~~ 265 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIFTKIDETTSLGSVFNILAES 265 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEEECTTTCSCCHHHHHHHHTC
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEEeCCCcccchhHHHHHHHHH
Confidence 322 12334444 378764 5777777766566544 4443211 11223455555544
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-08 Score=108.04 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=47.7
Q ss_pred eeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC---ccceEEEecCCCCCCCCCCHHHHHH
Q 000971 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---PERTAAYISQHDNHIGEMTVRETLA 248 (1206)
Q Consensus 172 s~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~Etl~ 248 (1206)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56778999999999999999999999999864 2445554433221 1245789999876666666655543
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.3e-08 Score=103.97 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~ 1026 (1206)
+.+.+|++|+.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4577899999999999999 9999999999999888653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-07 Score=104.06 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=84.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhhhcC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQG 255 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~f~~~~~~ 255 (1206)
++|++++|+|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 479999999999999999999999998643 34 24566666542 3355555543221
Q ss_pred CCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhhhhHHHHH
Q 000971 256 VGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG 335 (1206)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia 335 (1206)
.+|++.. + ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1122110 0 011 222345555
Q ss_pred HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh--cCCeEEEE-EecCchhHHhhcCeEEEEcCCeEEEe
Q 000971 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI--NSGTAVIS-LLQPAPETYDLFDDIILLSDGQIVYQ 406 (1206)
Q Consensus 336 ~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~--~~~t~vi~-i~q~~~~~~~~fD~vilL~~G~iv~~ 406 (1206)
+ +.+++++++| |.|+|+.....+.+.. ++... ...++++. ..|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~-~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELK-ETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHH-HHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHH-HHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 9999987654444333 22211 11222222 35555667777776656666777653
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.39 E-value=4.1e-07 Score=109.07 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=106.8
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1206)
....|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 456799999999999999999999999999999999875421 12 134555532 343
Q ss_pred HHHHHHH-hhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 244 RETLAFS-ARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 244 ~Etl~f~-~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
.+...-. +...+... . .+ . .+...+.+ .. .+...+..++..+.. +-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~--~---~l----~-~g~l~~~~--------------~~-~~~~a~~~l~~~~l~---i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA--Q---NL----R-TGKLTPED--------------WG-KLTMAMGSLSNAGIY---IDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH--H---HH----H-TSCCCHHH--------------HH-HHHHHHHHHHSSCEE---EEC--CT
T ss_pred HHHHHHHHHHHcCCCH--H---HH----h-cCCCCHHH--------------HH-HHHHHHHHHhcCCEE---EEC--CC
Confidence 3322210 00001100 0 00 0 00000000 00 112223333322211 111 23
Q ss_pred cCChhhhhHHHHHHHHh--cCCccceeecCCCCCCH--------HHHHHHHHHHHHHHHhcCCeEEEEEec---------
Q 000971 323 GISGGERKRVTTGEMMV--GPALALFMDEISTGLDS--------STTFQIVNCLKQHVHINSGTAVISLLQ--------- 383 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~--~~~~vlllDEptsgLDs--------~t~~~i~~~L~~~~~~~~~t~vi~i~q--------- 383 (1206)
++|++|.+ +.++.++ .+|+++++|+++...++ .....+.+.|+.+++..+.++| .++|
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi-~~sql~r~~e~~~ 371 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVI-ALSQLSRSVEQRQ 371 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEE-EEECCCTTSTTC-
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEE-EEecCCcccccCC
Confidence 68999886 5566665 67999999999998743 2336677888888876655544 4666
Q ss_pred ---Cc-------hhHHhhcCeEEEEcCCeE
Q 000971 384 ---PA-------PETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 384 ---~~-------~~~~~~fD~vilL~~G~i 403 (1206)
|. ..+...+|.|++|+.++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 22 146778999999987653
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-09 Score=122.27 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=55.4
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCC-CCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHD-NHIGEM 241 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1206)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++..... .+.+++++|.. ...|.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4688999999999 99999999999999999999875 6889998865432211 12345566653 245556
Q ss_pred CHHHHHH
Q 000971 242 TVRETLA 248 (1206)
Q Consensus 242 TV~Etl~ 248 (1206)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 6666664
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=8e-09 Score=123.87 Aligned_cols=164 Identities=10% Similarity=0.087 Sum_probs=91.3
Q ss_pred ceeeeeCCeEEEEEccCCCcHHHHHhhhcC----CCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC-CC-CCHHH
Q 000971 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSG----RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS-PF-VTVYE 933 (1206)
Q Consensus 860 vs~~i~~G~~~al~G~sGaGKSTLl~~L~g----~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~-~~-~Tv~e 933 (1206)
+++.+..+..+.|.|+|||||||+++.|.. ..++ |++.+.+.+.+...+.. | ..-+.+. +- -.+.+
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p----~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP----EDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT----TTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC----ceEEEEEECCchhhhhh---h-ccCCcccceeecCHHH
Confidence 556777899999999999999999999865 2222 33443333322111111 0 0001110 00 11222
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHH----------HHHHHHhhCCc-EE
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL----------TIAVELVANPS-II 1002 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl----------~ia~aL~~~P~-iL 1002 (1206)
....-.++ .++.+++ .+.++..|+.++.+..-.. ...+|+||+|+. .+|+++...|. ++
T Consensus 232 a~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 232 AANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 22111111 1233333 3678888887654321000 013677776642 35666778898 68
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCch
Q 000971 1003 FMDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPGI 1042 (1206)
Q Consensus 1003 ~LDEPTsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~p~~ 1042 (1206)
++||++.-+|.. ...+.+.|.++++ .|.++|+++|+|+.
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 999999988843 3445555555543 37799999999983
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-08 Score=126.82 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=98.1
Q ss_pred ceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCC--------
Q 000971 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-------- 924 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~-------- 924 (1206)
...+++++++.+++|+.+.|+||||+|||||+++|++..... ..|.+.+++.+... ....++|+++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 346899999999999999999999999999999999965432 23788888876543 3445788876421
Q ss_pred --------------CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHH
Q 000971 925 --------------HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLT 990 (1206)
Q Consensus 925 --------------~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ 990 (1206)
.+..+++.+|+.....-..+...-.. . ....-+.+|..+..... ..++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCcccccccccc
Confidence 11112222222110000000000000 0 00011112211111111 1469999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000971 991 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025 (1206)
Q Consensus 991 ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~ 1025 (1206)
.++...+++.+|||||... |++.....+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899888888888864
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-09 Score=119.01 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=54.6
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCC-CCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHD-NHIGEM 241 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1206)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++..... .+.+.+++|.. .+.|.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 4789999999999 99999999999999999999875 6889888865432111 12344555542 244555
Q ss_pred CHHHHHH
Q 000971 242 TVRETLA 248 (1206)
Q Consensus 242 TV~Etl~ 248 (1206)
++.|++.
T Consensus 112 ~~~Deid 118 (254)
T 1ixz_A 112 VFIDEID 118 (254)
T ss_dssp EEEETHH
T ss_pred EEehhhh
Confidence 6666663
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=8.4e-08 Score=115.06 Aligned_cols=166 Identities=11% Similarity=0.031 Sum_probs=89.6
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCC--CHHH
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEM--TVRE 245 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG--~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 245 (1206)
.+++.+..+..++|.|++||||||+|++|.. ....+ .|+|.+.+.+.+.... +.-..+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhh--------hhhccCCcccceeec
Confidence 3677788899999999999999999999875 23322 4667666655432110 100112222 2223
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccc--cccCccccc
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT--MVGDEMIRG 323 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt--~vg~~~~~~ 323 (1206)
+...+.+.-. ....+ .+.+ ..+++..|+.+..+. .+. ..
T Consensus 228 d~~~a~~~L~-----~~~~E-----------------------------merR-~~ll~~~Gv~~i~~yn~~~~----~~ 268 (512)
T 2ius_A 228 DMKDAANALR-----WCVNE-----------------------------MERR-YKLMSALGVRNLAGYNEKIA----EA 268 (512)
T ss_dssp SHHHHHHHHH-----HHHHH-----------------------------HHHH-HHHHHHTTCSSHHHHHHHHH----HH
T ss_pred CHHHHHHHHH-----HHHHH-----------------------------HHHH-HHHHHHcCCccHHHHHHHHH----HH
Confidence 3322211100 00111 1112 245666776654321 111 24
Q ss_pred CChhhhhHH----------HHHHHHhcCCc-cceeecCCCCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEecCch
Q 000971 324 ISGGERKRV----------TTGEMMVGPAL-ALFMDEISTGLDSSTTFQIVNCLKQHVHINS--GTAVISLLQPAP 386 (1206)
Q Consensus 324 LSGGqkkRv----------sia~~l~~~~~-vlllDEptsgLDs~t~~~i~~~L~~~~~~~~--~t~vi~i~q~~~ 386 (1206)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.|.++++..+ +..++..+|...
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 799998863 24455667787 88999999988843 3445555555544322 344444555443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.31 E-value=9.5e-10 Score=123.23 Aligned_cols=123 Identities=16% Similarity=0.199 Sum_probs=79.5
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVT 930 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~~T 930 (1206)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+.... ...+.+++++|... ..+.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 5789999999999 99999999999999999998653 46788887543211 11223456677643 456677
Q ss_pred HHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000971 931 VYESLLYSAWLRLPP-EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001 (1206)
Q Consensus 931 v~e~l~~~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~i 1001 (1206)
+.|++......+... ....++....+.+++ ..|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 777774322111100 001122222233332 24789999999999999999976
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-07 Score=98.52 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=36.0
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQ 368 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~ 368 (1206)
|..-..+.+.+|++++.+|+++++| ||+||.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4433445678999999999999999 999999999999988765
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.6e-08 Score=105.80 Aligned_cols=67 Identities=22% Similarity=0.137 Sum_probs=42.0
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHH
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
|+.+++|++++|+||||||||||+++|+|... .+.+++..... ...++.++|++|++..++.+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 56778999999999999999999999999642 24444433211 112345678888755444444333
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=8.9e-08 Score=114.03 Aligned_cols=51 Identities=20% Similarity=0.119 Sum_probs=45.2
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
.+|++||+.|++ +++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 479999999999 99999999999999999999997653 3689999998653
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-06 Score=97.91 Aligned_cols=117 Identities=18% Similarity=0.103 Sum_probs=78.6
Q ss_pred eceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHHHHH
Q 000971 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLA 248 (1206)
Q Consensus 169 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Etl~ 248 (1206)
+++++. +|++++|+|+||+||||++..|+|.+.+. .|+|.+.+.+... . .++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~-----~-------------~~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR-----P-------------AAR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC-----H-------------HHH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc-----H-------------hHH-HHHH
Confidence 678888 99999999999999999999999998754 6788777644210 0 000 0000
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
.+.+..|++.... +. +-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~~----~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---MD----GESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---CT----TCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---CC----CCCHHH
Confidence 0112234432210 00 122334
Q ss_pred hhHHHHHHHHhcCCccceeecC-CCCCCHHHHHHHHHHHHH
Q 000971 329 RKRVTTGEMMVGPALALFMDEI-STGLDSSTTFQIVNCLKQ 368 (1206)
Q Consensus 329 kkRvsia~~l~~~~~vlllDEp-tsgLDs~t~~~i~~~L~~ 368 (1206)
-+|.+++++...+++++++|+| +.|+|......+.+..+.
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 5688899888889999999999 999998877777766654
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-09 Score=120.18 Aligned_cols=123 Identities=16% Similarity=0.196 Sum_probs=78.7
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVT 930 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~~T 930 (1206)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|... ..+.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4789999999999 99999999999999999998653 46788887543211 11223456666542 456677
Q ss_pred HHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 000971 931 VYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001 (1206)
Q Consensus 931 v~e~l~~~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~i 1001 (1206)
+.|++..-...+.. .....++..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh
Confidence 77777322211110 00011222233333332 4789999999999999999986
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.25 E-value=7.3e-07 Score=102.83 Aligned_cols=30 Identities=37% Similarity=0.560 Sum_probs=27.0
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
|-+++|+++.|.||||||||||+..++...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999988888654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-06 Score=101.32 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=29.1
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
|-+++|+++.|.||||||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999999987654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-06 Score=103.08 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPG 1041 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~p~ 1041 (1206)
+++++|-.++.+....|.|||+||+ ++|.|......+.++|..+- ..+..||+++|+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677776667777776653 24788999999985
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.3e-07 Score=98.51 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=23.3
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHH-cCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALA-GKLDS 204 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~La-G~l~~ 204 (1206)
-+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999999 99753
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.12 E-value=7.9e-08 Score=103.79 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=40.0
Q ss_pred eeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-----------cceEEEecCC
Q 000971 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-----------ERTAAYISQH 234 (1206)
Q Consensus 172 s~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-----------~~~~~yv~Q~ 234 (1206)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++....+ +..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999987 8999999987732211 2457888873
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-06 Score=92.67 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=31.9
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000971 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027 (1206)
Q Consensus 989 l~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~ 1027 (1206)
...|++|+.+|.++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999998888877643
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.1e-06 Score=98.77 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=29.5
Q ss_pred Eeecce--eeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 856 LLNGLS--GAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 856 vL~~vs--~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
-|+.+- +-+.+|+++.|.||+|+|||||+..+++.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 47999999999999999999999999864
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.3e-06 Score=94.82 Aligned_cols=38 Identities=32% Similarity=0.236 Sum_probs=22.9
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhc-CCCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS-GRKT 892 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~-g~~~ 892 (1206)
+..+++|+++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5789999999999999999999999999999999 8753
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.5e-07 Score=99.84 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=38.3
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc-----------ccccceEEEeecC
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-----------ETFARISGYCEQN 922 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~q~ 922 (1206)
++.+.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999996553 35888888866411 1124567888874
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.1e-07 Score=97.40 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=49.6
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc--cceEEEecCCCCCCCCCCHHHHHHHH
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYISQHDNHIGEMTVRETLAFS 250 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lTV~Etl~f~ 250 (1206)
+..++|++++|+||||||||||+++|+|.+ |.+.++|.++..... ....++++|++...+.+++.+++...
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHH
Confidence 556789999999999999999999999975 778888866542111 12457888876555666666666543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1.5e-06 Score=100.69 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=85.5
Q ss_pred EEEEEccCCCcHHHHHhhhcCCCCC---------CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH---HHH
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRKTG---------GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE---SLL 936 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e---~l~ 936 (1206)
.++|+|++|||||||++.|+|.... ++..|.+.++|.+.. +....|++.+.+. ..|.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHHHHHH
Confidence 4999999999999999999995421 135688999885431 2233455443221 11111 111
Q ss_pred Hh--hh--h--cCCCCCC--HHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHH----HHH-hhCCcEEE
Q 000971 937 YS--AW--L--RLPPEVD--SETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIA----VEL-VANPSIIF 1003 (1206)
Q Consensus 937 ~~--a~--l--r~~~~~~--~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia----~aL-~~~P~iL~ 1003 (1206)
.. +. + ....+.. ..+....+.++++.+++.+..--.++.. ...+|+++++|+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 00 00 0 0011111 1223344677888887755431111211 234787888888877 555 334454
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh
Q 000971 1004 MDEPTSGLDARAAAIVMRTVRNTVD 1028 (1206)
Q Consensus 1004 LDEPTsgLD~~~~~~i~~~l~~~~~ 1028 (1206)
+|+|++|......+.+.|.++..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999998887653
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.4e-05 Score=95.38 Aligned_cols=34 Identities=38% Similarity=0.664 Sum_probs=29.2
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.++++++.+++| ++|.||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 466777777777 8899999999999999999965
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.9e-07 Score=96.59 Aligned_cols=41 Identities=27% Similarity=0.245 Sum_probs=31.6
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
....++|++++|+||||||||||+++|++.. |.+.++|.+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEccccc
Confidence 3456789999999999999999999999754 6678887654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.91 E-value=1e-05 Score=102.87 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCchHHHHhcCeE
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~p~~~i~~~~d~v 1051 (1206)
.-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||++. .+.+.|+..
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~ 262 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDA 262 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCC
Confidence 3479999999999999999999999999996 999887766666666554456778875 88765 566677643
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.90 E-value=5.7e-06 Score=95.89 Aligned_cols=157 Identities=15% Similarity=0.044 Sum_probs=85.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-------C-CceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH---HHHH
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDSS-------L-KVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR---ETLA 248 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~~-------~-~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~---Etl~ 248 (1206)
.++|+|+||||||||+++|+|..... . ..+|.|.++|.++.- -.++|++.+.+ ...|. .++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l---~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML---VDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE---EECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE---EeCCCchhcCC----HHHHHHHHHHHH
Confidence 48999999999999999999986411 0 247899999865421 12345554422 11121 1111
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
........-.-++ . .+++. . ..+....+..+++.+++.+..--.|+|. +.-+|+|+
T Consensus 254 ~~~~aD~il~VvD-------------~-s~~~~-~--------~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~ 309 (364)
T 2qtf_A 254 EAKYSDALILVID-------------S-TFSEN-L--------LIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDL 309 (364)
T ss_dssp GGGGSSEEEEEEE-------------T-TSCHH-H--------HHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCH
T ss_pred HHHhCCEEEEEEE-------------C-CCCcc-h--------HHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchH
Confidence 1000000000000 0 00000 0 0011123456777888766553445553 33478888
Q ss_pred hhHHHHH----HHH-hcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 000971 329 RKRVTTG----EMM-VGPALALFMDEISTGLDSSTTFQIVNCLKQHVH 371 (1206)
Q Consensus 329 kkRvsia----~~l-~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~ 371 (1206)
++|+.++ +.+ ..++++ +|+|++|......+.+.|.+...
T Consensus 310 ~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 310 YKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 8888877 444 333343 89999999999999988877544
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=7.9e-06 Score=86.07 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHH
Q 000971 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHV 370 (1206)
Q Consensus 331 Rvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~ 370 (1206)
....|++++..|.+.++| ||++|.....++++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999 99999999999988776543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.84 E-value=9.2e-06 Score=92.71 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=81.7
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 935 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 935 (1206)
-|+.+.+-++||+++.|.|++|+|||||+.-++..... .| ..+.|+.- .++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEeC------CCCHHHHH
Confidence 57777888999999999999999999998888742210 11 11233221 13332221
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 000971 936 LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015 (1206)
Q Consensus 936 ~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~ 1015 (1206)
.++......+.+..+.+ ..||.++.+|+..|...+.++++.+.|+|...+|
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred ------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 11222222222222222 1599999999999999999999999999865433
Q ss_pred HHHHHHHHHHHHh-C-CCEEEEEec
Q 000971 1016 AAIVMRTVRNTVD-T-GRTVVCTIH 1038 (1206)
Q Consensus 1016 ~~~i~~~l~~~~~-~-g~tvi~~~H 1038 (1206)
.|...++++.+ . |..+|++=|
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEec
Confidence 55566666654 3 677777644
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.9e-05 Score=89.89 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPG 1041 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~p~ 1041 (1206)
..+|++++|++. +.+...++-|+++| +|++|+|......+.+.++.... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998876 55556777789999 99999999988888877776543 77888888 7643
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.82 E-value=5.6e-06 Score=87.64 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=28.0
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~ 205 (1206)
+.+++|++++|+||||||||||+++|++.+.++
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 357899999999999999999999999998553
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.81 E-value=7.5e-06 Score=84.99 Aligned_cols=36 Identities=28% Similarity=0.261 Sum_probs=32.8
Q ss_pred eceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 000971 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205 (1206)
Q Consensus 169 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~ 205 (1206)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6788999999 99999999999999999999987653
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.80 E-value=4.4e-05 Score=86.78 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=31.0
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
.-|+++.+-+++|+++.|.|++|+|||||+.-++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 35788888899999999999999999999877764
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.78 E-value=4.1e-06 Score=95.35 Aligned_cols=81 Identities=15% Similarity=0.041 Sum_probs=61.6
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC---------c---cceEEEe-cC
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---------P---ERTAAYI-SQ 233 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~---------~---~~~~~yv-~Q 233 (1206)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998765 789998876653211 0 3457888 77
Q ss_pred CCCCCCCCCHHHHHHHH
Q 000971 234 HDNHIGEMTVRETLAFS 250 (1206)
Q Consensus 234 ~d~~~~~lTV~Etl~f~ 250 (1206)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65556666677777654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.2e-06 Score=93.96 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=35.2
Q ss_pred EEEEEee-EEEEecchhhhhcccccCceEEeecceeeeeC---CeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 828 SLTFDEV-VYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRP---GVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 828 ~l~~~~v-~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~---G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.+.++|+ +++++ +...+|+|+|+.|++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4788898 87762 123599999999999 9999999999999999999999743
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.9e-07 Score=108.70 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=52.8
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc---ceEEEecCCCC-CCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDN-HIGEM 241 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~-~~~~l 241 (1206)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.+.... +.+.+++|... ..|.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 3678899999999 99999999999999999999875 67889998765432211 23445555432 34444
Q ss_pred CHHHHH
Q 000971 242 TVRETL 247 (1206)
Q Consensus 242 TV~Etl 247 (1206)
.+.|++
T Consensus 127 l~IDEI 132 (499)
T 2dhr_A 127 VFIDEI 132 (499)
T ss_dssp EEEECG
T ss_pred EEEehH
Confidence 444444
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.68 E-value=5.7e-05 Score=86.18 Aligned_cols=139 Identities=15% Similarity=0.174 Sum_probs=86.7
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCH
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1206)
...-|+.+.+-++||+++.|.|+||+|||||+..++..... .| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 45678888888999999999999999999999988865421 11 23556543 3444
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
.+-..=. .... ..+.+.+..+ | .
T Consensus 87 ~ql~~Rl----------------ls~~---------------------------------~~v~~~~l~~---g-----~ 109 (338)
T 4a1f_A 87 EQLALRA----------------LSDL---------------------------------TSINMHDLES---G-----R 109 (338)
T ss_dssp HHHHHHH----------------HHHH---------------------------------HCCCHHHHHH---T-----C
T ss_pred HHHHHHH----------------HHHh---------------------------------hCCCHHHHhc---C-----C
Confidence 4332210 0000 0001111111 2 4
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
||+++.+|++.|...+.++++++.|+|... ..+|...++++....++..+|.+ |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI-----------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI-----------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE-----------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE-----------echHHhcC
Confidence 999999999999888888899999998643 23555566665544424444433 66666654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.67 E-value=1.2e-05 Score=84.90 Aligned_cols=41 Identities=27% Similarity=0.071 Sum_probs=25.5
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
....+++|||+.+++|++++|+|||||||||+.+.|++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34568999999999999999999999999999999998763
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=4.6e-06 Score=88.23 Aligned_cols=51 Identities=24% Similarity=0.340 Sum_probs=42.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCeeC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRV--TYNGHDM 219 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I--~~nG~~~ 219 (1206)
.+..+.++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchh
Confidence 445667777889999999999999999999999999986 2 5766 7777554
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.54 E-value=6.1e-06 Score=90.79 Aligned_cols=62 Identities=19% Similarity=0.082 Sum_probs=45.4
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCeeCCCCCc----cceEEEe
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALA---GKLDSSLKVSGRVT--------YNGHDMGEFVP----ERTAAYI 231 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~La---G~l~~~~~~~G~I~--------~nG~~~~~~~~----~~~~~yv 231 (1206)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++..... .+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 887665 89988 88887743211 2456777
Q ss_pred cCC
Q 000971 232 SQH 234 (1206)
Q Consensus 232 ~Q~ 234 (1206)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=2.6e-05 Score=97.62 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=71.1
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHH
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLY 937 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~ 937 (1206)
|+.+++|..++|+|++|+|||||++.|++....-...|+| .+|..... ....+.+++..|...+... ++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~----- 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR----- 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE-----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE-----
Confidence 3567889999999999999999999999633211123555 45543221 1112223333332111100 000
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000971 938 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017 (1206)
Q Consensus 938 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~ 1017 (1206)
..+.|+ +|...++ .......-..+..++++| |+.|++..+..
T Consensus 76 ----------------------------~nliDT----pG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 76 ----------------------------VFLLDA----PGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ----------------------------EEEEEC----CCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ----------------------------EEEEeC----CCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 011121 1111221 112222335677889999 99999988774
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCc
Q 000971 1018 IVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 1018 ~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
.+ +.+.+.|.++|+++|..+
T Consensus 118 ~~----~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 118 AW----TVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp HH----HHHHHTTCCEEEEEECGG
T ss_pred HH----HHHHHccCCEEEEecCCc
Confidence 33 333345889999999865
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.51 E-value=7.1e-05 Score=95.21 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=57.6
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEpts-gLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.... ....+++++.+++...+.++|++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCC
Confidence 34589999999999999999999999999996 999888777777665432 133566666678877777788753
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.49 E-value=8.7e-07 Score=106.53 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=51.6
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCccc---ccceEEEeecCCC-CCCCCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET---FARISGYCEQNDI-HSPFVT 930 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~---~~~~~gyv~q~~~-~~~~~T 930 (1206)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+..... ..+.+++++|... ..|.++
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 3688999999999 89999999999999999998643 356788886542211 1122345566543 345555
Q ss_pred HHHHH
Q 000971 931 VYESL 935 (1206)
Q Consensus 931 v~e~l 935 (1206)
+.|++
T Consensus 128 ~IDEI 132 (499)
T 2dhr_A 128 FIDEI 132 (499)
T ss_dssp EEECG
T ss_pred EEehH
Confidence 55555
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0002 Score=83.30 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=48.9
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCchHHHHhcCeEEEEec-CcEEEEEcCCCcchhH
Q 000971 997 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPLGRHSCQ 1072 (1206)
Q Consensus 997 ~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~p~~~i~~~~d~v~ll~~-gg~~~~~g~~~~~~~~ 1072 (1206)
.+|.+|++||+..- |......+.+.+.++.. .+.++|+++|++. ....++.-+ ..+ +.+.+.+.|+.. .+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~--~~~~l~~~~-~~r~~~~~i~~~pl~~--~~ 197 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA--VLNNLDPST-RGIMGKYVIRFSPYTK--DQ 197 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH--HHHTSCHHH-HHHHTTCEEECCCCBH--HH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch--HHHHhCHHh-hhcCCCceEEeCCCCH--HH
Confidence 45889999999876 88888788777766555 5789999999974 222222111 111 123577777753 34
Q ss_pred HHHHHHh
Q 000971 1073 LISYFEA 1079 (1206)
Q Consensus 1073 ~~~yf~~ 1079 (1206)
+.+++..
T Consensus 198 ~~~~l~~ 204 (389)
T 1fnn_A 198 IFDILLD 204 (389)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.48 E-value=3.6e-05 Score=81.21 Aligned_cols=38 Identities=29% Similarity=0.158 Sum_probs=24.3
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..+++|||+.+++|++++|+|++||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999643
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=2.8e-05 Score=84.15 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=35.4
Q ss_pred ceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 860 vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-++..++|++++|.|+||||||||+++|+|. .|+|.+.+.|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 4556789999999999999999999999986 25678888764
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.46 E-value=3.8e-05 Score=79.60 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=29.6
Q ss_pred ecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 858 NGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 858 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+++++.+.+| +++|+||||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 6788999999 9999999999999999999864
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.46 E-value=1e-05 Score=88.97 Aligned_cols=63 Identities=19% Similarity=0.103 Sum_probs=44.6
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhc---CCCCCCeeEEEEE--------EcCccCCc----ccccceEEEee
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNIT--------ISGYPKKQ----ETFARISGYCE 920 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~ 920 (1206)
++++.+ ++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 444443 789999999999999999999999 7654 3468887 78876532 22445678888
Q ss_pred cCC
Q 000971 921 QND 923 (1206)
Q Consensus 921 q~~ 923 (1206)
|.+
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 753
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=4.6e-05 Score=79.08 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=30.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~n 215 (1206)
.+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 368999999999999999999999987632 35666543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00017 Score=81.33 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=82.9
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL 943 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~ 943 (1206)
++.| .+||+|++|+|||||++.|.|.... + +.+.+. .+..+..|++.+++... ++.+ .
T Consensus 6 ~r~~-~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~~--tTr~~~~gi~~~~~~~i---~~iD---------T 63 (301)
T 1ega_A 6 SYCG-FIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKAQ--TTRHRIVGIHTEGAYQA---IYVD---------T 63 (301)
T ss_dssp CEEE-EEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCSS--CCSSCEEEEEEETTEEE---EEES---------S
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCCC--cceeeEEEEEEECCeeE---EEEE---------C
Confidence 3444 8999999999999999999986420 1 122221 22345567777754311 0000 0
Q ss_pred CCCCCHHHHHHHHHHHH-----HHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCCCHHH-
Q 000971 944 PPEVDSETRKMFIEEVM-----ELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA- 1015 (1206)
Q Consensus 944 ~~~~~~~~~~~~v~~~l-----~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~--~~P~iL~LDEPTsgLD~~~- 1015 (1206)
|. ...+. .....+.+ ..+.-.+..--.+- ... +|.|++ .++..+. ..|.||++ +.+|...
T Consensus 64 pG-~~~~~-~~~l~~~~~~~~~~~l~~~D~vl~Vvd--~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~ 131 (301)
T 1ega_A 64 PG-LHMEE-KRAINRLMNKAASSSIGDVELVIFVVE--GTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQE 131 (301)
T ss_dssp SS-CCHHH-HHHHHHHHTCCTTSCCCCEEEEEEEEE--TTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCC
T ss_pred cC-CCccc-hhhHHHHHHHHHHHHHhcCCEEEEEEe--CCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCcc
Confidence 10 11000 00111111 00111111111111 123 898887 4566666 68999998 7899876
Q ss_pred HHHHHHHHHHHHhC-CC--EEEEEecCCchHHHHhcCeEE
Q 000971 1016 AAIVMRTVRNTVDT-GR--TVVCTIHQPGIDIFDAFDELF 1052 (1206)
Q Consensus 1016 ~~~i~~~l~~~~~~-g~--tvi~~~H~p~~~i~~~~d~v~ 1052 (1206)
...+.+.+.++.+. |. .+.+++|+-. .+.+++|.+.
T Consensus 132 ~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 132 KADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 56677888877654 43 5666777654 4666666655
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.44 E-value=2.1e-05 Score=89.39 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=39.7
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
+++++++.+++|++++|+|+||+||||++..|++.... ..|+|.+.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 45789999999999999999999999999999985431 136777766654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=3e-05 Score=83.88 Aligned_cols=42 Identities=19% Similarity=0.064 Sum_probs=35.4
Q ss_pred eeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeC
Q 000971 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219 (1206)
Q Consensus 171 vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~ 219 (1206)
-++..++|++++|.||+|||||||+++|+|. .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 4456689999999999999999999999997 47788877653
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=2.1e-05 Score=83.41 Aligned_cols=71 Identities=6% Similarity=0.019 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH-HHHhcCeEEEEec
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGID-IFDAFDELFLMKR 1056 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~-i~~~~d~v~ll~~ 1056 (1206)
+.|+.+|..++..+..+|..+..+ ++.+++.....+.+.++.. .+.+||+.+|..... ....||.++++..
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 567888888888888887654322 2344555555554444322 356888888875421 2456898888853
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00026 Score=81.89 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=26.8
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+|+++++.++ .++|+|++|||||||++.|+|.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 47889999987 9999999999999999999994
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00046 Score=79.26 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=28.5
Q ss_pred eecce-eeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 857 LNGLS-GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 857 L~~vs-~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
|+.+- +-+++|+++.|.||+|+|||||+..++.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45443 5799999999999999999999988876
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00038 Score=79.03 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=33.6
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
...-|+++.+-+++|+++.|.|+||+|||||+..++..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 35568888888999999999999999999999888754
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00065 Score=76.11 Aligned_cols=71 Identities=24% Similarity=0.262 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---hHH
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPG---IDI 1044 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~p~---~~i 1044 (1206)
+++++.|..++.+...+|.+||+||+.+-++.. ....++..+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777777888888899999999998776532 22233333333211 2356788899764 234
Q ss_pred HHhcCeEE
Q 000971 1045 FDAFDELF 1052 (1206)
Q Consensus 1045 ~~~~d~v~ 1052 (1206)
...|++.+
T Consensus 177 ~~R~~~~i 184 (297)
T 3b9p_A 177 LRRFTKRV 184 (297)
T ss_dssp HHHCCEEE
T ss_pred HhhCCeEE
Confidence 44555443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=6.2e-05 Score=78.11 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=28.6
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEc
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS 903 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~ 903 (1206)
+|++++|+||||||||||++.|++..... ..|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~-~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR-FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT-EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc-EEEeeecc
Confidence 68999999999999999999999864321 34555443
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.32 E-value=2.1e-05 Score=86.21 Aligned_cols=39 Identities=41% Similarity=0.490 Sum_probs=36.3
Q ss_pred ceEeeceeeeEeC---CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 165 LTILKDVSGIIKP---GRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 165 ~~iL~~vs~~i~~---G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.++|+|+|+.|++ |+.++|+|++||||||+.++|++.+.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4589999999999 99999999999999999999999764
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.32 E-value=7.1e-05 Score=79.03 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=26.2
Q ss_pred eeeCCeEEEEEccCCCcHHHHHhhhcCCCC
Q 000971 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKT 892 (1206)
Q Consensus 863 ~i~~G~~~al~G~sGaGKSTLl~~L~g~~~ 892 (1206)
++++|++++|+||||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999998763
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0001 Score=78.34 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=27.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.30 E-value=3.7e-05 Score=89.19 Aligned_cols=44 Identities=36% Similarity=0.329 Sum_probs=39.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTY 214 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 214 (1206)
..+|+++++.+++|++++|+||||||||||+++|+|.+ .|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999963 566654
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00025 Score=74.99 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=36.9
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH--HhhcCeEEEEc
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET--YDLFDDIILLS 399 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~--~~~fD~vilL~ 399 (1206)
.+.|+.+|..+++.+..+|..+.++ .+.+++.....+.+.++.. .++.+|+. .+...+. ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~-~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFV-VPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEE-CTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEE-echhhhcCcHhhCCEEEEEE
Confidence 3678899999999998888765444 2345555554444444321 23444443 3333333 56788877763
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=77.00 Aligned_cols=45 Identities=31% Similarity=0.189 Sum_probs=37.0
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1206)
-.+++|++++|+|+||||||||++.|++.++ .+.+++|++.+++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 3567899999999999999999999999864 15788888766643
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00054 Score=78.05 Aligned_cols=34 Identities=38% Similarity=0.558 Sum_probs=28.7
Q ss_pred Eeecce-eeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 856 LLNGLS-GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 856 vL~~vs-~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
.|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 345543 6799999999999999999999988875
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=5e-05 Score=80.21 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=39.4
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEE--EEcCccC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNI--TISGYPK 907 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i--~i~g~~~ 907 (1206)
.+.+.++...++|++++|+||||||||||+++|++... ..|.+ .++|.+.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 45677788889999999999999999999999998643 12444 7777543
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=9.3e-05 Score=76.09 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=29.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCe
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH 217 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~ 217 (1206)
++|++++|+|||||||||++++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999874 55666653
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.19 E-value=6.9e-05 Score=79.24 Aligned_cols=40 Identities=25% Similarity=0.082 Sum_probs=33.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCe
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH 217 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~ 217 (1206)
.++|++++|+||||||||||++.|++.+.+. .|.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEecc
Confidence 5689999999999999999999999988654 566666543
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00011 Score=77.25 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=26.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
..+|++++|+||||||||||++.|++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999999875
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0008 Score=80.14 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=93.6
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC--CCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~--~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
-|+.+.+-+++|+++.|.|++|+|||||..-++.... .+. .-+.++.. ++..+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~--~vl~~slE-----------------------~~~~~ 243 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV--GVGIYSLE-----------------------MPAAQ 243 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC--CEEEEESS-----------------------SCHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC--eEEEEECC-----------------------CCHHH
Confidence 5777777899999999999999999999887775221 110 01222221 12111
Q ss_pred HHH--HhhhhcCC------CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCcEEE
Q 000971 934 SLL--YSAWLRLP------PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIF 1003 (1206)
Q Consensus 934 ~l~--~~a~lr~~------~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~--~~P~iL~ 1003 (1206)
-.. .+.....+ ...+.++ ...+.+.++.+.-.++. +-. ..++|..+- .+.++.+. .+|++++
T Consensus 244 l~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIv 315 (444)
T 2q6t_A 244 LTLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLII 315 (444)
T ss_dssp HHHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEE
T ss_pred HHHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEE
Confidence 110 00000000 0122222 22334444443222211 111 125677665 34556665 4799999
Q ss_pred EeCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecC-----------Cch-------HHHHhcCeEEEE
Q 000971 1004 MDEPTSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIHQ-----------PGI-------DIFDAFDELFLM 1054 (1206)
Q Consensus 1004 LDEPTsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H~-----------p~~-------~i~~~~d~v~ll 1054 (1206)
+|..+.=.+. .....+.+.|+.++++ |++||+++|- |.. .+...+|.|+.|
T Consensus 316 ID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L 395 (444)
T 2q6t_A 316 IDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFI 395 (444)
T ss_dssp EECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEE
T ss_pred EcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEE
Confidence 9998753322 1234677778888765 9999999983 221 245578998888
Q ss_pred ec
Q 000971 1055 KR 1056 (1206)
Q Consensus 1055 ~~ 1056 (1206)
.+
T Consensus 396 ~r 397 (444)
T 2q6t_A 396 YR 397 (444)
T ss_dssp EE
T ss_pred ec
Confidence 65
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0024 Score=71.39 Aligned_cols=28 Identities=43% Similarity=0.668 Sum_probs=24.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.++.-++|.||||+|||||+++|++.+.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4567889999999999999999998753
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00038 Score=80.53 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=27.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
..+|+++++.++ .++|+|++||||||||++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.14 E-value=7.3e-05 Score=86.69 Aligned_cols=37 Identities=22% Similarity=0.091 Sum_probs=34.7
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.+|+++++.+++|++++|+||||||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4899999999999999999999999999999999853
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00017 Score=76.69 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=25.8
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRKT 892 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~~ 892 (1206)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00093 Score=77.18 Aligned_cols=56 Identities=7% Similarity=0.131 Sum_probs=41.3
Q ss_pred cCChhhhhHHHHHHHHhcCCccceee-cCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMD-EISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllD-EptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i 381 (1206)
.+|+||++++. +.+...++-++++| ++..|+|......+++.+..... +..++++.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 58999988876 55555677888999 99999999988888877765432 44555443
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0011 Score=75.64 Aligned_cols=36 Identities=33% Similarity=0.370 Sum_probs=30.0
Q ss_pred Eeecee-eeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 167 ILKDVS-GIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 167 iL~~vs-~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.|+.+- +-+++|+++.|.||||||||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 344443 679999999999999999999999988753
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0022 Score=73.63 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=29.3
Q ss_pred eecee-eeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 168 LKDVS-GIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 168 L~~vs-~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
|+.+- |-+++|+++.|.||||||||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 67999999999999999999999999875
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00031 Score=83.62 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=49.0
Q ss_pred hCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEE-EecCcEEEEEcCCC
Q 000971 997 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL-MKRGGQEIYVGPLG 1067 (1206)
Q Consensus 997 ~~P~iL~LDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~l-l~~gg~~~~~g~~~ 1067 (1206)
.+|++||+||+..-.+. .+...+..++..+.+.|+.||+++|.|..++....+++.- +. .|.++..+++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887664 6777888888888888999999999865332112222222 22 35777777775
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00038 Score=73.67 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.4
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
--.+++|.+++|+|++|||||||.+.|++..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457789999999999999999999999864
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00015 Score=88.19 Aligned_cols=41 Identities=34% Similarity=0.451 Sum_probs=35.4
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCe
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSG-RVT-YNGH 217 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G-~I~-~nG~ 217 (1206)
.+++|++++|+|+||||||||+++|+|.+.+. +| .|. ++|.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCc
Confidence 57899999999999999999999999999875 55 674 7764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00013 Score=91.41 Aligned_cols=49 Identities=33% Similarity=0.308 Sum_probs=35.2
Q ss_pred eeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCC
Q 000971 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222 (1206)
Q Consensus 172 s~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~ 222 (1206)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..+.+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~ 51 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDY 51 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccC
Confidence 3457789999999999999999999999765431 236777 566554443
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00027 Score=72.26 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999865
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00064 Score=76.60 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=26.3
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
+.++++.-+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788999999999999999999999743
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00036 Score=70.06 Aligned_cols=28 Identities=29% Similarity=0.672 Sum_probs=23.5
Q ss_pred ceeeeeCCeEEEEEccCCCcHHHHHhhhc
Q 000971 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 860 vs~~i~~G~~~al~G~sGaGKSTLl~~L~ 888 (1206)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455565 99999999999999999986
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00048 Score=69.14 Aligned_cols=30 Identities=37% Similarity=0.515 Sum_probs=24.3
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG 200 (1206)
+.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344455555 999999999999999999873
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00013 Score=82.77 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
+++|+||||||||||+++|++.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999998763
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00038 Score=73.16 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=24.7
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.+|++++|+||||||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999999999754
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0016 Score=76.65 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
++.+++++||+|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999964
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00047 Score=70.73 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=29.4
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
.+|++++|+|+|||||||+++.|++.. |.+.+++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 479999999999999999999998753 456666643
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00034 Score=81.01 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.4
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0017 Score=72.99 Aligned_cols=30 Identities=37% Similarity=0.600 Sum_probs=26.7
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.++++.-++|.||||+|||||+++|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 457788999999999999999999999864
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0003 Score=83.75 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=40.1
Q ss_pred CCccceeecCCCCCCH-HHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE-EcCCeEEEecCh
Q 000971 341 PALALFMDEISTGLDS-STTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL-LSDGQIVYQGPR 409 (1206)
Q Consensus 341 ~~~vlllDEptsgLDs-~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil-L~~G~iv~~G~~ 409 (1206)
++++||+||+..-.+. .+...+...+..+. ..+..+|++.+.+..++..+.+++.- +..|.++..+++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 7899999999887764 56666777777654 34556666555544443222222222 344555554443
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00019 Score=81.36 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=33.4
Q ss_pred ceEEeecceeeeeCCe------EEEEEccCCCcHHHHHhhhcCCC
Q 000971 853 KLVLLNGLSGAFRPGV------LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 853 ~~~vL~~vs~~i~~G~------~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..+.|++++..+..+. ++||+||||||||||+++|.+..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457888888887776 99999999999999999999854
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00019 Score=82.53 Aligned_cols=48 Identities=21% Similarity=0.174 Sum_probs=39.6
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG 216 (1206)
.+++++++.+++|..++|+|+||+|||||++.|+|.+.+. .|+|.+-+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 4677888888999999999999999999999999987653 45555443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0056 Score=70.91 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=24.7
Q ss_pred CCe--EEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 177 PGR--MTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 177 ~G~--~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
++. .++|.||+|+|||||++.+++.+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345 8999999999999999999998765
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00047 Score=79.36 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=32.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCee
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~ 218 (1206)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 467899999999999999999999987654 5677665544
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00072 Score=72.98 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=27.7
Q ss_pred EeeceeeeEe---CCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 167 ILKDVSGIIK---PGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 167 iL~~vs~~i~---~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
-|.++|+.+. +|.+++|.||+||||||+++.|+..+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3677777776 9999999999999999999999998763
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00032 Score=80.22 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=42.2
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEee--------------cceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLN--------------GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~--------------~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+.|+|+++.++. .+..|+ |+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4567788776642 234677 89999999999999999999999999999863
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00062 Score=69.57 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.|++++|+||||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00042 Score=84.25 Aligned_cols=43 Identities=35% Similarity=0.439 Sum_probs=33.7
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEE-EEE-EcCcc
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITG-NIT-ISGYP 906 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G-~i~-i~g~~ 906 (1206)
..+++|++++|+|+||||||||+++|+|+..+. .| .+. ++|..
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~ 408 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDI 408 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcH
Confidence 357899999999999999999999999965421 33 564 77743
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0073 Score=67.78 Aligned_cols=28 Identities=43% Similarity=0.510 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
|...+++.||||+|||||.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4568899999999999999999998754
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00063 Score=70.15 Aligned_cols=38 Identities=34% Similarity=0.410 Sum_probs=30.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCe
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSG--RVTYNGH 217 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G--~I~~nG~ 217 (1206)
++|++++|.|++||||||+++.|++.+.+ .| .|.++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECCh
Confidence 47999999999999999999999998743 24 5555543
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00086 Score=70.70 Aligned_cols=41 Identities=22% Similarity=0.188 Sum_probs=30.8
Q ss_pred eeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 863 ~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
..++|++++|+|+||||||||++.|++.... ..|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~ 58 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHM 58 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEecc
Confidence 3578999999999999999999999985421 1244555443
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0021 Score=65.64 Aligned_cols=27 Identities=33% Similarity=0.671 Sum_probs=23.2
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999853
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00049 Score=84.05 Aligned_cols=46 Identities=28% Similarity=0.502 Sum_probs=38.6
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG 216 (1206)
+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 566677777 89999999999999999999999998764 67776655
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0028 Score=64.79 Aligned_cols=27 Identities=41% Similarity=0.656 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999974
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0026 Score=75.65 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=39.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-------C--CCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCCCHHHH
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLDS-------S--LKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMTVRET 246 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~~-------~--~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~Et 246 (1206)
-.++|+|+||+|||||++.|+|.... . -...|.+.++|.++.-++. ++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 46899999999999999999998531 0 0247899999976532211 2223333343334444444444
Q ss_pred HHH
Q 000971 247 LAF 249 (1206)
Q Consensus 247 l~f 249 (1206)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.00067 Score=72.06 Aligned_cols=41 Identities=29% Similarity=0.326 Sum_probs=33.7
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCe
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSG--RVTYNGH 217 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G--~I~~nG~ 217 (1206)
.+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 35689999999999999999999999988643 56 6666653
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0096 Score=64.18 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcC
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD 1049 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d 1049 (1206)
+.|.-.+.. ...+.+-++|++||+-. ++|......+++.+.....+-++|+++.--+...+.+.|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 445555542 33578899999999976 6777665444444443333335666665444433444554
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0053 Score=72.84 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=29.5
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
-|+.+.+-+.+|+++.|.|++|+|||||.--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 5777777799999999999999999999776664
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.021 Score=65.62 Aligned_cols=30 Identities=40% Similarity=0.599 Sum_probs=26.7
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+-+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998888653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0026 Score=66.10 Aligned_cols=35 Identities=37% Similarity=0.434 Sum_probs=20.9
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
.+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999998888 5689999999999999999984
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0044 Score=68.78 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=23.9
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
+.++.-+.|.||+|+|||||.+.|+...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566779999999999999999998643
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0014 Score=75.75 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=25.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.++..++|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577999999999999999999998764
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0016 Score=68.82 Aligned_cols=28 Identities=29% Similarity=0.672 Sum_probs=23.3
Q ss_pred ceeeeeCCeEEEEEccCCCcHHHHHhhhc
Q 000971 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 860 vs~~i~~G~~~al~G~sGaGKSTLl~~L~ 888 (1206)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34555565 99999999999999999885
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=67.60 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=23.5
Q ss_pred eeeeEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 000971 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 171 vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG 200 (1206)
.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 34455554 999999999999999998863
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0019 Score=66.90 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=26.6
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888888999999999999999999999976
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0029 Score=65.67 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=21.1
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998887 7899999999999999999873
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0016 Score=68.73 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=26.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999999998764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0012 Score=69.16 Aligned_cols=35 Identities=34% Similarity=0.463 Sum_probs=30.5
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47888888888886 689999999999999999874
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.025 Score=60.96 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
-++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4789999999999999999997653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0011 Score=76.14 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=34.2
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
..+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3588999999999999999999999999999999874
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0021 Score=69.36 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=26.1
Q ss_pred Eeecceeeee---CCeEEEEEccCCCcHHHHHhhhcCCCC
Q 000971 856 LLNGLSGAFR---PGVLTALMGVSGAGKTTLMDVLSGRKT 892 (1206)
Q Consensus 856 vL~~vs~~i~---~G~~~al~G~sGaGKSTLl~~L~g~~~ 892 (1206)
-|.++++.+. +|.+++|.|++||||||+++.|+....
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3666677666 999999999999999999999997543
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.002 Score=66.33 Aligned_cols=40 Identities=28% Similarity=0.238 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCee
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~ 218 (1206)
.+++|+||+|||||||++.|.+.+......-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999999865332234777776543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0098 Score=69.95 Aligned_cols=35 Identities=29% Similarity=0.184 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTY 214 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 214 (1206)
++.+++++||+||||||++..|++.+... .++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEE
Confidence 68899999999999999999999987653 344444
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.015 Score=66.77 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=28.2
Q ss_pred Eeecce--eeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 856 LLNGLS--GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 856 vL~~vs--~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455544 4689999999999999999999877764
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0018 Score=69.17 Aligned_cols=37 Identities=32% Similarity=0.364 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTY 214 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 214 (1206)
+..++|+|||||||||+.+.|++.+....-.+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999876321112455544
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0036 Score=74.40 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=29.9
Q ss_pred EEEEEccCCCcHHHHHhhhcCCCC------C----CeeEEEEEEcCcc
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRKT------G----GYITGNITISGYP 906 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~~------~----~~~~G~i~i~g~~ 906 (1206)
.+||+|+||+|||||++.|+|... + ....|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999998532 1 1346888888864
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0064 Score=65.10 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=42.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHHhcCeEEEEe
Q 000971 998 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 998 ~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~p~~~i~~~~d~v~ll~ 1055 (1206)
+|+++++||.-. |+. .+++.++.+++.|.+||++-| .++.++...+|+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 654 355566777777999999999 56678889999999875
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0007 Score=78.32 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=36.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.....-.......+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 44678888877 999999999999999998874432 344433332221100011234445544444456777
Q ss_pred HHHHHH
Q 000971 245 ETLAFS 250 (1206)
Q Consensus 245 Etl~f~ 250 (1206)
||.-++
T Consensus 101 DTpG~g 106 (361)
T 2qag_A 101 DTPGYG 106 (361)
T ss_dssp C-----
T ss_pred Eecccc
Confidence 776653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0022 Score=67.21 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=31.2
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 5799999999999999999874
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0092 Score=67.61 Aligned_cols=46 Identities=4% Similarity=0.067 Sum_probs=34.5
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000971 996 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 996 ~~~P~iL~LDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
..+|.+||+||+.. .-+..+...+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 45799999999865 23446777888888887777777777777553
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.018 Score=65.19 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=28.1
Q ss_pred Eeecce-eeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 856 LLNGLS-GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 856 vL~~vs-~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
-|+.+- +-+++|+++.|.||+|+|||||..-++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444 6799999999999999999999887764
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0021 Score=66.55 Aligned_cols=30 Identities=43% Similarity=0.566 Sum_probs=26.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
.++|.++.|.|++||||||+.+.|+..+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999999998764
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0029 Score=66.72 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=25.0
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999998644
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0031 Score=64.83 Aligned_cols=27 Identities=41% Similarity=0.420 Sum_probs=24.0
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999753
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.015 Score=64.28 Aligned_cols=28 Identities=43% Similarity=0.678 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++.-++|.||||+|||||+++|+..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999998764
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0021 Score=70.40 Aligned_cols=39 Identities=26% Similarity=0.251 Sum_probs=31.2
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCe
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH 217 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~ 217 (1206)
..+++.+++|+|+|||||||+.+.|+..+. .|.+.++|-
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D 66 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGD 66 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecH
Confidence 456788999999999999999999999875 244556653
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.001 Score=71.98 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=36.4
Q ss_pred HhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 338 MVGPALALFMDEIST-GLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 338 l~~~~~vlllDEpts-gLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
.+.+-+++++||.-. ++|......+++.+..... ...+++++.+.+.+...++|+.
T Consensus 173 ~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 173 GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 578889999999966 6887766555554443321 2346666666666666566654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.019 Score=61.92 Aligned_cols=43 Identities=5% Similarity=0.105 Sum_probs=28.8
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecC
Q 000971 997 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIHQ 1039 (1206)
Q Consensus 997 ~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H~ 1039 (1206)
.+|+++++..+.+.++......+...++.+.. ...+||+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 46889988888888888666555555443321 12588888883
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.026 Score=64.98 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.8
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
++..-+.|.||+|+|||||.+.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45667899999999999999999864
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0031 Score=67.43 Aligned_cols=56 Identities=20% Similarity=0.074 Sum_probs=36.7
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCCCC-CeeEEEEEE--------cCccCCc----ccccceEEEeecC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITI--------SGYPKKQ----ETFARISGYCEQN 922 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~~~-~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~q~ 922 (1206)
+.+++|+||+||||||+.++|++.... -...|++.. +|.+... ..+.+.+|+++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 468999999999999999999974311 123466655 5654431 1233446677665
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.001 Score=75.70 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=32.2
Q ss_pred EeeceeeeEeCCeE--EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 167 ILKDVSGIIKPGRM--TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 167 iL~~vs~~i~~G~~--~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++.++..+++|+. ++|+||+||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56677777788887 99999999999999999999764
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0044 Score=71.90 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=26.3
Q ss_pred eeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 171 vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4456678889999999999999999999987
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0075 Score=63.15 Aligned_cols=113 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~ 945 (1206)
+..-+.|.||+|+|||||++.|+...... ...+.|+
T Consensus 53 ~~~~~~l~G~~GtGKT~la~~i~~~~~~~------------------~~~~~~~-------------------------- 88 (202)
T 2w58_A 53 KMKGLYLHGSFGVGKTYLLAAIANELAKR------------------NVSSLIV-------------------------- 88 (202)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHTT------------------TCCEEEE--------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc------------------CCeEEEE--------------------------
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC--CCCCCHHHHHHHHHHH
Q 000971 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP--TSGLDARAAAIVMRTV 1023 (1206)
Q Consensus 946 ~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEP--TsgLD~~~~~~i~~~l 1023 (1206)
.......++.....-....... ..+.++++|++||+ ...-+......+..++
T Consensus 89 -----~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l 142 (202)
T 2w58_A 89 -----YVPELFRELKHSLQDQTMNEKL---------------------DYIKKVPVLMLDDLGAEAMSSWVRDDVFGPIL 142 (202)
T ss_dssp -----EHHHHHHHHHHC---CCCHHHH---------------------HHHHHSSEEEEEEECCC---CCGGGTTHHHHH
T ss_pred -----EhHHHHHHHHHHhccchHHHHH---------------------HHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHH
Q ss_pred HHHHhCCCEEEEEecCCchHHHHhc
Q 000971 1024 RNTVDTGRTVVCTIHQPGIDIFDAF 1048 (1206)
Q Consensus 1024 ~~~~~~g~tvi~~~H~p~~~i~~~~ 1048 (1206)
......+..+|++++.+-.++...+
T Consensus 143 ~~~~~~~~~~i~tsn~~~~~l~~~~ 167 (202)
T 2w58_A 143 QYRMFENLPTFFTSNFDMQQLAHHL 167 (202)
T ss_dssp HHHHHTTCCEEEEESSCHHHHHHHS
T ss_pred HHHHhCCCCEEEEcCCCHHHHHHHH
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0032 Score=73.89 Aligned_cols=45 Identities=24% Similarity=0.126 Sum_probs=37.7
Q ss_pred eceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCee
Q 000971 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218 (1206)
Q Consensus 169 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~ 218 (1206)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999998764 5677665543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.01 Score=59.88 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.074 Score=64.16 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=28.4
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
-|+.+.+-+.+|+++.|.|++|+|||||+.-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4566666799999999999999999999766653
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0046 Score=64.03 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=26.1
Q ss_pred cceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 859 ~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999864
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0024 Score=77.88 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=39.1
Q ss_pred EEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
.+++++++.+ +|+.+.|+||||+|||||+++|++... ...|.|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 4678888888 899999999999999999999998543 23577776664
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0041 Score=71.20 Aligned_cols=33 Identities=36% Similarity=0.633 Sum_probs=31.6
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999865
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0098 Score=60.01 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0054 Score=64.42 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 000971 180 MTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG 200 (1206)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0065 Score=62.64 Aligned_cols=27 Identities=41% Similarity=0.674 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.+|.+++|.|+|||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0048 Score=70.89 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=29.7
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
+++.+++|+|++|||||||+|.|+|...+ ..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEeec
Confidence 46789999999999999999999984321 12455555443
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0023 Score=71.79 Aligned_cols=44 Identities=25% Similarity=0.132 Sum_probs=35.7
Q ss_pred ec-eeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 000971 169 KD-VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216 (1206)
Q Consensus 169 ~~-vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG 216 (1206)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~ 133 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVG 133 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 45 777776 9999999999999999999999988653 45665544
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0056 Score=68.82 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+..++|+|+||+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999973
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.008 Score=61.73 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 000971 180 MTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.063 Score=61.71 Aligned_cols=28 Identities=36% Similarity=0.598 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++..-++|.||+|+|||||.++|+..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3556789999999999999999998753
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.019 Score=66.15 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.9
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.031 Score=66.34 Aligned_cols=38 Identities=29% Similarity=0.566 Sum_probs=33.1
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
..-|+.+.+-+++|+++.|.|+||+|||||+..++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44677777889999999999999999999999888754
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.012 Score=60.37 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0067 Score=62.05 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998875
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0018 Score=74.93 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=27.4
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
+.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 34778888877 999999999999999998753
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0025 Score=72.52 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=33.2
Q ss_pred EEeecceeeeeCCeE--EEEEccCCCcHHHHHhhhcCC
Q 000971 855 VLLNGLSGAFRPGVL--TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 855 ~vL~~vs~~i~~G~~--~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+++.+++.+++|+. ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 378899999999998 999999999999999999974
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0071 Score=62.22 Aligned_cols=38 Identities=34% Similarity=0.315 Sum_probs=28.0
Q ss_pred eEEEEEccCCCcHHHHHhhhcCCCC-CCeeEEEEEEcCc
Q 000971 868 VLTALMGVSGAGKTTLMDVLSGRKT-GGYITGNITISGY 905 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~ 905 (1206)
.+++|+|+||||||||++.|.+... .+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5889999999999999999987422 2233466666553
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0066 Score=63.67 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.007 Score=64.77 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~ 945 (1206)
++..+.|.||+|+|||||++.++...... -.--+.++........
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~~~~~~~---------------------------------- 95 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLGIHASIS---------------------------------- 95 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGGGGGSC----------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHHH----------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH--HHHHHHHH
Q 000971 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA--AAIVMRTV 1023 (1206)
Q Consensus 946 ~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~--~~~i~~~l 1023 (1206)
.=+...+.+|.+|++|| ...++... ...+.+.+
T Consensus 96 --------------------------------------------~~~~~~~~~~~vliiDe-~~~~~~~~~~~~~l~~~l 130 (242)
T 3bos_A 96 --------------------------------------------TALLEGLEQFDLICIDD-VDAVAGHPLWEEAIFDLY 130 (242)
T ss_dssp --------------------------------------------GGGGTTGGGSSEEEEET-GGGGTTCHHHHHHHHHHH
T ss_pred --------------------------------------------HHHHHhccCCCEEEEec-cccccCCHHHHHHHHHHH
Q ss_pred HHHHhCCCE-EEEEecCC
Q 000971 1024 RNTVDTGRT-VVCTIHQP 1040 (1206)
Q Consensus 1024 ~~~~~~g~t-vi~~~H~p 1040 (1206)
......+.. +|++++.+
T Consensus 131 ~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 131 NRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp HHHHHHCSCEEEEEESSC
T ss_pred HHHHHcCCCeEEEEcCCC
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0059 Score=64.06 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999997
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0067 Score=66.25 Aligned_cols=34 Identities=41% Similarity=0.773 Sum_probs=24.9
Q ss_pred eeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++++++.+++| ++|.||||+|||||+++|++.+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 45555555555 88999999999999999999864
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0089 Score=60.52 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++|.||+||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.11 Score=58.67 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.0
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..|..-+.|.||.|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566788999999999999999999643
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0088 Score=69.40 Aligned_cols=46 Identities=17% Similarity=0.378 Sum_probs=33.5
Q ss_pred ceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC---------CCeeEEEEEEcCc
Q 000971 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT---------GGYITGNITISGY 905 (1206)
Q Consensus 860 vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~---------~~~~~G~i~i~g~ 905 (1206)
+-+.++.|..++|+|++|+|||||++.|+|... -.+..|.+.+++.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 345678899999999999999999999998521 1234577776653
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0027 Score=72.65 Aligned_cols=40 Identities=30% Similarity=0.635 Sum_probs=35.0
Q ss_pred ceEeeceeeeEeCCeE--EEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 165 LTILKDVSGIIKPGRM--TLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~--~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
..+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4577788888888988 999999999999999999998754
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0097 Score=61.58 Aligned_cols=27 Identities=44% Similarity=0.588 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+++.++.|.|+|||||||+.+.|+-.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.01 Score=66.20 Aligned_cols=28 Identities=36% Similarity=0.401 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
..+.++.|.|||||||||+.+.|+..++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567999999999999999999987653
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0077 Score=64.92 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
-+++|.|||||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0098 Score=61.47 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=26.1
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
....+|.++.|+|++||||||+.+.|++..
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999998753
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.059 Score=58.52 Aligned_cols=120 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL 943 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~ 943 (1206)
+++..-+.|.||+|+|||||.+.++...... -+.+++.......
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~~~~----~~~~~~~~~~~~~-------------------------------- 79 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEAQVP----FLAMAGAEFVEVI-------------------------------- 79 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC----EEEEETTTTSSSS--------------------------------
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCC----EEEechHHHHhhc--------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC-----------C
Q 000971 944 PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL-----------D 1012 (1206)
Q Consensus 944 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgL-----------D 1012 (1206)
.-.+..+.+-.+..+.-..|.+||+||.-.=. +
T Consensus 80 ------------------------------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~ 123 (262)
T 2qz4_A 80 ------------------------------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123 (262)
T ss_dssp ------------------------------------TTHHHHHHHHHHHHHHHTCSEEEEEECC----------------
T ss_pred ------------------------------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccc
Q ss_pred HHHHHHHHHHHHHHHh----CCCEEEEEecCCc---hHHHH--hcCeEEEEe
Q 000971 1013 ARAAAIVMRTVRNTVD----TGRTVVCTIHQPG---IDIFD--AFDELFLMK 1055 (1206)
Q Consensus 1013 ~~~~~~i~~~l~~~~~----~g~tvi~~~H~p~---~~i~~--~~d~v~ll~ 1055 (1206)
......+.+++..+.. .+..||+++..|. ..+.. .||+.+.+.
T Consensus 124 ~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 124 TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp ---CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.012 Score=60.72 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+|.+++|.|++||||||+.+.|+-.+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987653
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.066 Score=63.44 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=32.7
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
...-|+.+.+-++||+++.|.|+||+|||||+.-++..
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 34567877778999999999999999999999888764
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.85 E-value=0.0097 Score=65.08 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998754
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.0097 Score=62.96 Aligned_cols=30 Identities=30% Similarity=0.285 Sum_probs=26.6
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..+++|.+++|+|++||||||+.+.|++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 446789999999999999999999999754
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.015 Score=60.74 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.0097 Score=62.39 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.7
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=58.76 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 000971 180 MTLLLGPPASGKTTLLLAL 198 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L 198 (1206)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.017 Score=58.95 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 000971 179 RMTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG 200 (1206)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.015 Score=62.74 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999864
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.017 Score=60.53 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987653
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.016 Score=59.65 Aligned_cols=26 Identities=27% Similarity=0.166 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36688999999999999999999765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.014 Score=59.91 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999964
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.014 Score=59.95 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.014 Score=60.11 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.3
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.015 Score=59.61 Aligned_cols=27 Identities=44% Similarity=0.358 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
..+..++|.|++||||||+.+.|+-.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356788999999999999999998654
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.013 Score=61.03 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 579999999999999999998764
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.013 Score=60.76 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3478999999999999999987654
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.0086 Score=62.31 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=24.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++++.+++|.|++||||||+.+.|+-.+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999998764
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.013 Score=59.82 Aligned_cols=24 Identities=46% Similarity=0.531 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.++|+|||||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998753
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.017 Score=58.94 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.4
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
|.++.|+|++||||||+.+.|+.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999654
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.018 Score=59.61 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+++.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998764
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.043 Score=57.22 Aligned_cols=53 Identities=19% Similarity=0.363 Sum_probs=41.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHHhcCeEEEEe
Q 000971 998 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 998 ~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~p~~~i~~~~d~v~ll~ 1055 (1206)
+.+++++||.-- +|+. +++.++.+++.|..||++-+ .++.++.+.+|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 468999999654 6533 35667787778999999999 55678889999998775
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.01 Score=69.59 Aligned_cols=46 Identities=22% Similarity=0.082 Sum_probs=35.4
Q ss_pred ecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 858 NGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 858 ~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
+++++. +|++++++|++|+||||++..|++..... .+.|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccc
Confidence 577887 89999999999999999999999854321 25666655543
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.02 Score=60.16 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998764
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.017 Score=58.47 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+++|+|++||||||+.+.|+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.30 E-value=0.0051 Score=70.32 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=33.9
Q ss_pred eEEeecceeeeeCCeE--EEEEccCCCcHHHHHhhhcCCC
Q 000971 854 LVLLNGLSGAFRPGVL--TALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~--~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..+++.++..++.|++ +.|.||+|+||||+++++++..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3478889999999998 9999999999999999999753
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.016 Score=59.18 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987653
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.025 Score=58.39 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.017 Score=62.18 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.8
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999863
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.089 Score=60.59 Aligned_cols=120 Identities=23% Similarity=0.273 Sum_probs=0.0
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcC--CCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHhh
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 939 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a 939 (1206)
+-+++|+++.|.||+|+|||||...++. ...++ .-++++........+.+..|.-.++-.+....++.+.+
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~---~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l---- 141 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG---TCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQAL---- 141 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH----
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCC---eEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHH----
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCC------
Q 000971 940 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL------ 1011 (1206)
Q Consensus 940 ~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~--~~P~iL~LDEPTsgL------ 1011 (1206)
.++..++ .+++++++|..++=.
T Consensus 142 --------------------------------------------------~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~ 171 (366)
T 1xp8_A 142 --------------------------------------------------EIMELLVRSGAIDVVVVDSVAALTPRAEIE 171 (366)
T ss_dssp --------------------------------------------------HHHHHHHTTTCCSEEEEECTTTCCCSTTC-
T ss_pred --------------------------------------------------HHHHHHHhcCCCCEEEEeChHHhccccccc
Q ss_pred ----CH---HHHHHHHHHHHHH----HhCCCEEEEEec
Q 000971 1012 ----DA---RAAAIVMRTVRNT----VDTGRTVVCTIH 1038 (1206)
Q Consensus 1012 ----D~---~~~~~i~~~l~~~----~~~g~tvi~~~H 1038 (1206)
|. ..++.+.+.+++| .+.+++||++.|
T Consensus 172 g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 172 GDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.024 Score=60.05 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHc
Q 000971 178 GRMTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG 200 (1206)
+-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.024 Score=60.27 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|..++|+|++||||||+.+.|+-.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1206 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-23 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-17 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-20 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-16 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 8e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 8e-21 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-23 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-19 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-22 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-21 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-19 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-21 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-18 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-18 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-16 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-14 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-17 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 9e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-04 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-04 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 3e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 4e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 5e-04 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.002 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 0.002 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.003 | |
| d1tf7a2 | 242 | c.37.1.11 (A:256-497) Circadian clock protein KaiC | 0.004 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (275), Expect = 2e-27
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 8/208 (3%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L+G+S + G +T ++G +G+GK+TL++V++G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
Q +TV E+LL ++S K +I + E+VE I +
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 975 LPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
L LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G T + H+ + + D L++M G
Sbjct: 200 GITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 99.7 bits (248), Expect = 1e-23
Identities = 56/254 (22%), Positives = 90/254 (35%), Gaps = 35/254 (13%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
L VS + G +TL++GP SGK+TL+ + G L + GRV + D+ P
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 73
Query: 225 E----RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
Q + EMTV E L C G L + + E
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE-------- 125
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
E L+ L L D G+ +SGG+ K V G ++
Sbjct: 126 -------------EMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
+ MDE G+ I N + + G + + + D + ++ +
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLELK--AKGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 401 GQIVYQGPRELVLE 414
GQI+ +G E ++
Sbjct: 226 GQIIAEGRGEEEIK 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 108 bits (272), Expect = 5e-27
Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 11/203 (5%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
+ G+ G + L+G +GAGKTT + ++G R G I N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
+ P +TVYE+L+ A+ R E ++ LK ++ L G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
LS +++ L I L++ P ++ MDEP+ GL + V ++ G T++
Sbjct: 139 -----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 1035 CTIHQPGIDIFDAFDELFLMKRG 1057
++++ G
Sbjct: 194 LVEQNAL-GALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 81.5 bits (201), Expect = 1e-17
Identities = 46/251 (18%), Positives = 86/251 (34%), Gaps = 42/251 (16%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD-SSLKVSGRVTYNGHDMGEFV 223
+ +K + + G++ L+G +GKTT L A+AG + K+ + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
A + + E+TV E L A + + R
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE------GIKRDLEWI---------- 122
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+ L+ + G +SGGE++ + G ++
Sbjct: 123 ------------------FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE S GL ++ +++ GT ++ + Q A + +L GQI
Sbjct: 160 LLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVLETGQI 217
Query: 404 VYQGPRELVLE 414
V +G +L+
Sbjct: 218 VLEGKASELLD 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (270), Expect = 7e-27
Identities = 51/216 (23%), Positives = 100/216 (46%), Gaps = 12/216 (5%)
Query: 848 GVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISG 904
+ E+ + L ++ + G ++MG SG+GK+T+++++ + T G + NI +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 905 YPKKQETFARIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 962
+ T R G+ Q P +T E++ + + E R+ E +++
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 963 VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
EL+ + + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANHK----PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 1023 VRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
++ + G+TVV H I++ + + +K G
Sbjct: 188 LKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 88.0 bits (218), Expect = 7e-20
Identities = 47/257 (18%), Positives = 90/257 (35%), Gaps = 47/257 (18%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
++ + LK+V+ IK G ++GP SGK+T+L + + G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 219 MGEFVPERTA-------AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN 271
+ + ++ Q N I +T E + + G+
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM------------ 116
Query: 272 EAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKR 331
G+E LK+ LE + +SGG+++R
Sbjct: 117 -------------------SGEERRKRALECLKMAELE----ERFANHKPNQLSGGQQQR 153
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391
V + + D+ + LDS T +I+ LK+ ++ G V+ ++
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSDGQIVYQGP 408
+ II L DG++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 107 bits (269), Expect = 1e-26
Identities = 56/270 (20%), Positives = 97/270 (35%), Gaps = 52/270 (19%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
T + ++ IK G +LLGP GKTT L +AG + + GR+ + D+ P
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 75
Query: 225 E-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ R + + Q MTV E +AF + +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD------------------------ 111
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
E + + ++L +E + +SGG+R+RV +V
Sbjct: 112 ----------EIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPD 156
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE + LD+ + +K+ + I + E + D I +++ GQ+
Sbjct: 157 VLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
Query: 404 VYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ G E + P VA F+
Sbjct: 216 LQIGSPT---EVYLR-----PNSVFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 104 bits (260), Expect = 2e-25
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 17/210 (8%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
+N L+ + G L+G SG GKTT + +++G T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTY 72
Query: 910 -ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
R Q+ P +TVYE++ + ++ + + + EL++++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1027
+ + LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
T + H + D + +M RG
Sbjct: 185 KLKVTTIYVTHDQV-EAMTMGDRIAVMNRG 213
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 98.5 bits (245), Expect = 6e-24
Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 16/183 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L ++ G + G +G GKTTL+ +S + G I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 917 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976
+ + I ++V + L A L K I + +E VE+ L +
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK----- 122
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1035
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 123 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 1036 TIH 1038
+
Sbjct: 182 SRE 184
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 76.1 bits (187), Expect = 3e-16
Identities = 32/215 (14%), Positives = 72/215 (33%), Gaps = 48/215 (22%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L+ ++ I+ G + GP GKTTLL ++ L G + YNG + + +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
++ + +++V + L A GV + +
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------- 110
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALAL 345
L+ + + + +S G +RV ++ A
Sbjct: 111 -----------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
+D+ +D + +++ + + + G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIIS 181
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 99.3 bits (247), Expect = 8e-24
Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
K +L G+S G + L+G +GAGKTT + ++S + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
++ Y + + E L + A S + +E E+ L I
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
+ V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G T++ + H ++ D + L+ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 90.8 bits (225), Expect = 8e-21
Identities = 58/276 (21%), Positives = 95/276 (34%), Gaps = 56/276 (20%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
ILK +S I+ G + L+GP +GKTT L ++ + S SG VT G ++ E
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 71
Query: 225 E--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
E + +Y+ + M E L F A S
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS----------------------- 108
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
E + + ++ GL V S G +++ ++
Sbjct: 109 -----------EIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNP 152
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE ++GLD ++ LKQ G ++ E L D I L+ +G
Sbjct: 153 RLAILDEPTSGLDVLNAREVRKILKQAS--QEGLTILVSSHNMLEVEFLCDRIALIHNGT 210
Query: 403 IVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEVT 437
IV G EL + K + + + +EV
Sbjct: 211 IVETGTVEEL---------KERYKAQNIEEVFEEVV 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 99.5 bits (248), Expect = 1e-23
Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 21/215 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L G+S R G + +++G SG+GK+T + ++ + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 914 RIS-----------GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 962
Q+ +TV E+++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 963 VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
V + Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1023 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
++ + G+T+V H+ G + + +G
Sbjct: 192 MQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 86.8 bits (215), Expect = 2e-19
Identities = 50/286 (17%), Positives = 98/286 (34%), Gaps = 66/286 (23%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+LK VS + G + ++G SGK+T L + S G + NG ++
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRD 71
Query: 225 E----------------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELAR 268
+ + QH N MTV E + + S+++
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD------- 124
Query: 269 RENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328
+ A + YL +G++ A + +SGG+
Sbjct: 125 ----------------ARERALK----------YLAKVGIDERAQ----GKYPVHLSGGQ 154
Query: 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388
++RV+ + L DE ++ LD +++ ++Q G ++ +
Sbjct: 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFA 212
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434
+ +I L G+I +G E + F + P+ + FL+
Sbjct: 213 RHVSSHVIFLHQGKIEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 98.4 bits (245), Expect = 2e-23
Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 14/206 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
LN +S G + ++G SGAGK+TL+ ++ R T G + ++ + + T A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G Q+ TV+ ++ L P+ + + R + E++ LV L S
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELLSLVGLGDKHDSY 137
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1031
S LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G
Sbjct: 138 P-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRG 1057
T++ H+ + + D + ++ G
Sbjct: 193 TILLITHEMDV-VKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 3e-22
Identities = 52/280 (18%), Positives = 95/280 (33%), Gaps = 57/280 (20%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+ + L +VS + G++ ++G +GK+TL+ + + G V +G +
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 219 MGEFVPERTA------AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENE 272
+ I QH N + TV +A E+ RR E
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-----EVKRRVTE 123
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332
L ++GL D+ + +SGG+++RV
Sbjct: 124 L-----------------------------LSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392
+ L DE ++ LD +TT I+ LK G ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINR-RLGLTILLITHEMDVVKRIC 208
Query: 393 DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADF 432
D + ++S+G+++ Q E F PK F
Sbjct: 209 DCVAVISNGELIEQDTVS---EVFSH-----PKTPLAQKF 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 98.5 bits (245), Expect = 5e-23
Identities = 37/201 (18%), Positives = 82/201 (40%), Gaps = 19/201 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L ++ G + A+ G +G+GKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 917 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976
+C Q P T+ E++++ E ++ + ++ + +++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1036
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1037 IHQPGIDIFDAFDELFLMKRG 1057
+ ++ D++ ++ +G
Sbjct: 215 TSK--MEHLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 92.3 bits (229), Expect = 5e-21
Identities = 49/281 (17%), Positives = 95/281 (33%), Gaps = 60/281 (21%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+LK+++ I+ G M + G SGKT+LL+ + G+L++S G + ++G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGRV-------- 99
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
++ SQ + I T++E + F + +
Sbjct: 100 --SFCSQ-FSWIMPGTIKENIIFGVSYDE-----YRYKSVVKACQLQ------------- 138
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
+ +T++G+ + +SGG+R R++ + A
Sbjct: 139 ----------------QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYL 181
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+D LD T Q+ + N +++ E D I++L G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFY 238
Query: 407 G-PREL-------VLEFFESMGFKCPKRKGVADFLQEVTSR 439
G EL + F + + L E R
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 97.6 bits (243), Expect = 6e-23
Identities = 53/270 (19%), Positives = 100/270 (37%), Gaps = 50/270 (18%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
+ + F Y + ILKD++ I+ G +G GK+TL+ + D +
Sbjct: 19 IDHVSFQY----NDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT- 71
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
SG++ +GH++ +F+ I Q DN + TV+E + G
Sbjct: 72 --SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDE 122
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324
E+ A ++ L DT VG E +
Sbjct: 123 EVVEAAKMANAHDF--------------------------IMNLPQGYDTEVG-ERGVKL 155
Query: 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQP 384
SGG+++R++ + + L +DE ++ LD + I L ++ + ++
Sbjct: 156 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAH 211
Query: 385 APETYDLFDDIILLSDGQIVYQGPRELVLE 414
T D I+++ +G IV G ++
Sbjct: 212 RLSTITHADKIVVIENGHIVETGTHRELIA 241
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 92.9 bits (231), Expect = 2e-21
Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 33/244 (13%)
Query: 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 881
+ + + D V + + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 882 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDIHSPFVTVYESLLYSA 939
TL++++ +G I I G+ K + Q D TV E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG- 115
Query: 940 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-VGLPGVSG-----LSTEQRKRLTIAV 993
P D E + E ++ I +L G G LS Q++RL+IA
Sbjct: 116 ---RPTATDEE-----VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167
Query: 994 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053
+ NP I+ +DE TS LD + +I+ + + RT + H+ + D++ +
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHR--LSTITHADKIVV 224
Query: 1054 MKRG 1057
++ G
Sbjct: 225 IENG 228
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.0 bits (236), Expect = 3e-22
Identities = 53/271 (19%), Positives = 109/271 (40%), Gaps = 48/271 (17%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F+D+ F Y P+R +L+ ++ ++PG +T L+GP SGK+T+ L +
Sbjct: 14 FQDVSFAY----PNRPDV-LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT- 67
Query: 207 KVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
G++ +G + ++ R A + Q + + +++E +A+
Sbjct: 68 --GGQLLLDGKPLPQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY-------------- 110
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
G+ P ++ A G + GL DT V + +
Sbjct: 111 ----------GLTQKPTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ- 151
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGG+R+ V ++ L +D+ ++ LD+++ Q+ L + S + ++
Sbjct: 152 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH 211
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+ D I+ L G I G + ++E
Sbjct: 212 --LSLVEQADHILFLEGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.1 bits (213), Expect = 4e-19
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 11/205 (5%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L GL+ RPG +TAL+G +G+GK+T+ +L + TGG + + Y +
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY--LH 87
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R Q ++ E++ Y L P ++ T + P
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAY--GLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 144
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRT 1032
S LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + + R+
Sbjct: 145 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 1033 VVCTIHQPGIDIFDAFDELFLMKRG 1057
V+ + + A D + ++ G
Sbjct: 205 VLLITQHLSL-VEQA-DHILFLEGG 227
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 94.5 bits (235), Expect = 5e-22
Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 13/205 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFA 913
L ++ G AL+G SG+GK+T+ +++ G+I + G+ ++ +
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLR 88
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSL 972
QN +++ R + M+ + + ++
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMDNGLDTI 145
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
+G G LS QR+R+ IA L+ + I+ +DE TS LD + + + + RT
Sbjct: 146 IGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRT 203
Query: 1033 VVCTIHQPGIDIFDAFDELFLMKRG 1057
+ H+ + + DE+ +++ G
Sbjct: 204 SLVIAHR--LSTIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 85.3 bits (211), Expect = 9e-19
Identities = 51/268 (19%), Positives = 101/268 (37%), Gaps = 45/268 (16%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F ++ F Y P R+ L++++ I G+ L+G SGK+T+ + D
Sbjct: 16 FRNVTFTY----PGREVP--ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID- 68
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTEL 266
G + +GHD+ E+ ++ V L +
Sbjct: 69 --EGHILMDGHDLREYTLASLRNQVAL----------------------VSQNVHLFNDT 104
Query: 267 ARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326
+ + +A + A + GL DT++G E +SG
Sbjct: 105 VANNIAYARTEEYSREQIEEAA----RMAYAMDFINKMDNGL----DTIIG-ENGVLLSG 155
Query: 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386
G+R+R+ ++ + L +DE ++ LD+ + I L + + + ++
Sbjct: 156 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRL 211
Query: 387 ETYDLFDDIILLSDGQIVYQGPRELVLE 414
T + D+I+++ DG IV +G +L
Sbjct: 212 STIEQADEIVVVEDGIIVERGTHSELLA 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 93.1 bits (231), Expect = 1e-21
Identities = 44/211 (20%), Positives = 78/211 (36%), Gaps = 27/211 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP---KKQETFA 913
L LSG R G + L+G +GAGK+TL+ ++G +G G+I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
Y Q V+ L + TR + +V + L +
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 974 GLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1027 VDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G +V + H +L+K G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 82.3 bits (203), Expect = 6e-18
Identities = 49/259 (18%), Positives = 80/259 (30%), Gaps = 60/259 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T L +SG ++ G + L+GP +GK+TLL +AG G + + G + +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ + + L L+ +SGGE +RV +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 343 LA-------LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
L +DE LD + + L G A++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 396 ILLSDGQIVYQGPRELVLE 414
LL G+++ G RE VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 91.5 bits (227), Expect = 5e-21
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 12/210 (5%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP---K 907
D V+L+ ++ + + G + ++G SG+GK+TL ++ + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLALA 70
Query: 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
R G Q D ++ +++ + +V + + + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK---LAGAHDFISELR 126
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
+ + +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
GRTV+ H+ + +A D + +M++G
Sbjct: 186 CKGRTVIIIAHRLST-VKNA-DRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 82.3 bits (203), Expect = 6e-18
Identities = 57/271 (21%), Positives = 100/271 (36%), Gaps = 52/271 (19%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F +I F Y + IL +++ IK G + ++G SGK+TL +
Sbjct: 4 FRNIRFRY------KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE- 56
Query: 207 KVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
+G+V +GHD+ P R + Q DN + ++ + ++
Sbjct: 57 --NGQVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISL-------------- 99
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
+P + V A + A + + E G
Sbjct: 100 -------------ANPGMSVEKVIYAAKLAGA-------HDFISELREGYNTIVGEQGAG 139
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGG+R+R+ +V L DE ++ LD + I+ + + I G VI +
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH 196
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
T D II++ G+IV QG + +L
Sbjct: 197 -RLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 88.5 bits (219), Expect = 4e-20
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 13/208 (6%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET 911
++V+ ++ G +G SG GK+TL+ +++G +T + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTP 68
Query: 912 FARIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
A G Q+ P ++V E++ + L + R + +V E+++L L+
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLD 125
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1029
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
GRT++ H D++ ++ G
Sbjct: 181 GRTMIYVTHDQVE-AMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 82.3 bits (203), Expect = 5e-18
Identities = 53/271 (19%), Positives = 91/271 (33%), Gaps = 52/271 (19%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223
+ + KD++ I G + +GP GK+TLL +AG + SG + M +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 224 PERTA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
P + Q ++V E ++F + G
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE----------------------- 105
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
N + +VL L D +SGG+R+RV G +V
Sbjct: 106 -----------VINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE + LD++ Q+ + + T + E L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 208
Query: 403 IVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ G E + P + VA F+
Sbjct: 209 VAQVGKPL---ELYHY-----PADRFVAGFI 231
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 84.2 bits (208), Expect = 1e-18
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 15/212 (7%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 908
++ + +S + G L+G SG GKTT + +++G + G I G+ ++ K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 909 QETFARISG--YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
+ Q+ P +TVY+++ + LR P + + R + EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLT 130
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
L+ LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 1027 V-DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G T + H + D + +M RG
Sbjct: 186 QRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 77.7 bits (191), Expect = 2e-16
Identities = 52/270 (19%), Positives = 95/270 (35%), Gaps = 44/270 (16%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223
+T ++++S +K G +LLGP GKTT L +AG + S G++ + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ + + Y L + +N I
Sbjct: 72 KGIFVPPKDRDIAMVFQS------------------YALYPHMTVYDN---------IAF 104
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+K QE + ++LGL + + +SGG+R+RV G +V
Sbjct: 105 PLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQ 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
MDE + LD + + + + G I + E + D I +++ G +
Sbjct: 160 VFLMDEPLSNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218
Query: 404 VYQGPRELVLEFFESMGFKCPKRKGVADFL 433
G + E ++ P VA F+
Sbjct: 219 QQVGSPD---EVYDK-----PANTFVAGFI 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 83.8 bits (207), Expect = 2e-18
Identities = 51/251 (20%), Positives = 84/251 (33%), Gaps = 42/251 (16%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL+D+S +P + GP GK+T+ L + +G +T +G + E
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 226 RTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ I D+ I T+RE L + + +LA + PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+T VG E ISGG+R+R+ +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LDS + + L + G + + T D I + GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 404 VYQGPRELVLE 414
G ++
Sbjct: 216 TGSGKHNELVA 226
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 83.0 bits (205), Expect = 4e-18
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 15/206 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L +S +P + A G SG GK+T+ +L + T G IT I + +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WR 75
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEV--MELVELKPLIQS 971
G+ Q+ T+ E+L Y L + E ++ VE P +
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTY----GLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1031
+S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + + GR
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGR 189
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRG 1057
T + H+ I DA D+++ +++G
Sbjct: 190 TTLVIAHRLST-IVDA-DKIYFIEKG 213
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 82.8 bits (204), Expect = 4e-18
Identities = 59/267 (22%), Positives = 103/267 (38%), Gaps = 55/267 (20%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER- 226
L ++S ++ G ++LGP +GKT L +AG SGR+ +G D+ + PE+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
A++ Q+ + M V++ L F R + + +R +
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--------KRVLDT------------- 111
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
+ L +E D +SGGE++RV +V L
Sbjct: 112 ----------------ARDLKIEHLL-----DRNPLTLSGGEQQRVALARALVTNPKILL 150
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE + LD T + + +H + V+ + E + D I ++ DG+++
Sbjct: 151 LDEPLSALD-PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 407 GPRELVLEFFESMGFKCPKRKGVADFL 433
G E E FE P VA F+
Sbjct: 210 GKPE---EIFEK-----PVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 71.6 bits (175), Expect = 2e-14
Identities = 42/203 (20%), Positives = 77/203 (37%), Gaps = 16/203 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG-YPKKQETFARI 915
L+ LS G ++G +GAGKT +++++G I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 916 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
+ QN P + V ++L + ++ + + V++ + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRN 124
Query: 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1034
P LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 P--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1035 CTIHQPGIDIFDAFDELFLMKRG 1057
H + D + ++ G
Sbjct: 183 HITHDQT-EARIMADRIAVVMDG 204
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 82.8 bits (204), Expect = 4e-18
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 14/210 (6%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQE 910
K+V L+ ++ G ++G SGAGKTT M +++G + G + + + K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 911 T--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
R G Q P +T +E++ + ++ E + +EEV +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1027
+ LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G T++ H P DIF D + ++ +G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 80.5 bits (198), Expect = 3e-17
Identities = 49/279 (17%), Positives = 96/279 (34%), Gaps = 57/279 (20%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
+K + L +V+ I+ G +LGP +GKTT + +AG S +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 221 EFVPE------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
R + Q +T E +AF +
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE-------------- 116
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
++ E K+L + + R +SG +++RV
Sbjct: 117 ----------IRKRVEE----------VAKILDIHHVLNHF-----PRELSGAQQQRVAL 151
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
+V L +DE + LD+ +K+ T ++ PA + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210
Query: 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ +L G++V G E + +++ P VA +
Sbjct: 211 VGVLVKGKLVQVGKPE---DLYDN-----PVSIQVASLI 241
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 73.1 bits (179), Expect = 9e-15
Identities = 54/265 (20%), Positives = 90/265 (33%), Gaps = 56/265 (21%)
Query: 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA- 228
+V +LLGP +GK+ L +AG + G V NG D+ PER
Sbjct: 17 NVD-FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGI 72
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI 288
++ Q ++V +A+ R R + E+
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM---------------------- 110
Query: 289 ATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMD 348
E + D +SGGER+RV +V L +D
Sbjct: 111 -------------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151
Query: 349 EISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408
E + +D T + + V ++ + E L D++ ++ +G+IV +G
Sbjct: 152 EPLSAVDLKTKGVL-MEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210
Query: 409 RELVLEFFESMGFKCPKRKGVADFL 433
+ E F K VA+FL
Sbjct: 211 LK---ELFS------AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.5 bits (167), Expect = 4e-13
Identities = 48/234 (20%), Positives = 98/234 (41%), Gaps = 27/234 (11%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQN 922
L+G +GAGK+ +++++G + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 923 DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982
P ++VY ++ Y V+ R + E+ E + + L+ + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPG 1041
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1042 IDIFDAFDELFLMKRGG-------QEIYVGPLGRHSCQLISYFEAIPGVEKIKD 1088
+ DE+ +M G +E++ + +S + V KI D
Sbjct: 189 -EAAMLADEVAVMLNGRIVEKGKLKELF-SAKNGEVAEFLSARNLLLKVSKILD 240
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.8 bits (107), Expect = 6e-06
Identities = 23/201 (11%), Positives = 46/201 (22%), Gaps = 42/201 (20%)
Query: 871 ALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 927
+ G G GKTTL+ + ++ G+ T + K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987
+ + + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA 1047
+I +DE + + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 1048 FDELFLMKRGGQEIYVGPLGR 1068
E+ + G I + P R
Sbjct: 146 VKEIRRLP-GAVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 39.6 bits (91), Expect = 9e-04
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 182 LLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
++ G P GKTTL+ + +L + E
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPE 40
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 3e-04
Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 7/186 (3%)
Query: 172 SGIIKPGRMTLLLGPPASGKTTLLL--ALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAA 229
G I+ G +T + G +GKT + A+ +L G F PER A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 230 YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIA 289
++ ++ A + + + A + D +Y +
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 136
Query: 290 TEGQEANVITDY-----YLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
G+ + L L E ++ ++++ + G + + G +A
Sbjct: 137 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 196
Query: 345 LFMDEI 350
Sbjct: 197 HASTTR 202
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.6 bits (96), Expect = 4e-04
Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 22/152 (14%)
Query: 921 QNDIHSPFVTVYESLL-----------YSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ + +Y L +A L + E + + L K +
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
G V+ L+ L A+ +DE + LD + +R +
Sbjct: 332 YLSGGEKTVAALA------LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP 385
Query: 1030 GRTVVCTIHQPGIDIFDAFDELF---LMKRGG 1058
+ + +F+ D L ++
Sbjct: 386 DLQFIVISLKNT--MFEKSDALVGVYRQQQEN 415
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 5e-04
Identities = 16/137 (11%), Positives = 36/137 (26%), Gaps = 3/137 (2%)
Query: 185 GPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244
+GKTTLL L L + R H + ++ + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALCAR---GIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
+ A EL + + ++ + + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 305 VLGLEVCADTMVGDEMI 321
L ++ + D +
Sbjct: 126 ELVIDRHVIAVASDVPL 142
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (89), Expect = 0.002
Identities = 10/102 (9%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
Query: 871 ALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 930
+ G +GKT+L+ +L+ + + + + +
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
++ + + K LV++ + +S
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS 107
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (88), Expect = 0.002
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 179 RMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
R ++ GP +GK+TLL L + S S T GE +
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKD 49
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 0.003
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKL-------DSSLKVSGRVTYNGHDM-GEF 222
+ ++ G + L+ P +GK+ L L LA ++ + +G V Y +
Sbjct: 23 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA 81
Query: 223 VPERTAAYISQHDNH 237
+ R A +
Sbjct: 82 IHHRLHALGAHLSAE 96
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 38.0 bits (87), Expect = 0.004
Identities = 15/146 (10%), Positives = 24/146 (16%), Gaps = 6/146 (4%)
Query: 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYI 231
G + L G +GKT L+ E +
Sbjct: 20 GGGFFKDSIILATGATGTGKTLLVSRFVENA------CANKERAILFAYEESRAQLLRNA 73
Query: 232 SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATE 291
EM + L + L + N+ + A
Sbjct: 74 YSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVS 133
Query: 292 GQEANVITDYYLKVLGLEVCADTMVG 317
E
Sbjct: 134 NNAFRQFVIGVTGYAKQEEITGLFTN 159
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1206 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.74 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.56 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.31 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.31 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.22 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.91 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.79 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.42 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.42 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.32 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.9 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.84 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.43 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.43 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.36 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.16 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.14 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.64 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.59 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.53 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.5 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.3 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.29 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.22 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.22 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.2 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.18 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.09 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.09 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.04 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.98 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.96 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.93 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.92 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.91 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.9 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.9 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.76 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.76 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.75 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.72 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.7 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.61 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.6 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.56 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.48 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.45 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.38 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.33 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.33 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.3 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.28 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.22 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.18 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.18 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.15 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.14 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.11 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.11 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.05 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.0 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.98 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.91 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.9 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.89 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.86 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.85 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.8 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.8 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.8 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.79 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.78 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.76 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.75 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.69 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.63 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.61 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.59 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.58 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.53 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.47 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.46 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.43 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.42 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.41 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.38 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.37 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.36 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.33 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.28 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.23 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.23 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.21 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.2 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.18 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.16 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.16 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.14 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.12 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.12 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.09 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.08 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.07 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.05 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.05 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.03 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.02 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.01 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.0 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.98 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.98 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.95 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.94 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.9 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.87 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.86 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.84 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.83 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.82 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.79 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.78 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.74 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.72 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.71 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.69 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.66 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 93.6 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.59 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.53 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.52 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.42 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.41 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.38 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.37 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.36 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.33 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.31 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.27 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.22 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.21 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.2 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.1 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.09 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.05 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.0 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.99 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.89 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.81 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.76 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.69 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.66 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.64 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.63 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.5 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.38 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.34 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.34 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.27 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.2 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.17 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.09 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.08 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.08 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.05 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.02 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 92.02 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.0 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.97 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.92 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 91.91 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.89 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.81 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.8 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.73 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.67 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.61 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.6 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.6 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.55 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.54 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.5 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.48 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.45 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.43 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.41 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.41 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.4 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.33 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.33 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.28 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.21 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.18 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.16 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.09 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.07 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.04 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.01 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 91.0 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.99 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.98 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.91 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.86 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.84 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 90.84 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.83 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.77 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 90.72 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.7 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.65 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.6 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.56 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.46 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.38 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.35 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.34 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.29 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.28 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.25 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.24 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.22 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.21 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.19 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.15 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.15 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.14 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 90.05 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.03 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.98 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.96 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.92 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 89.9 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.86 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 89.76 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.74 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.74 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.7 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.69 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.66 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.64 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.62 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.57 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 89.54 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.54 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.53 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.48 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.45 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.37 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.35 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.32 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.28 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.27 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.24 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.23 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.22 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.22 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.22 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 89.2 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 89.16 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 89.15 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.14 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.12 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.99 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.95 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.92 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 88.85 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 88.79 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 88.76 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.74 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.72 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 88.72 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 88.68 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 88.68 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.56 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 88.53 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.53 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.5 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 88.49 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.41 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.39 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.28 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.23 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.21 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.21 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.19 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.16 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.11 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.09 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.07 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.02 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.99 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.93 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 87.92 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.81 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.72 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.63 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 87.62 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.6 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.56 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 87.56 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.55 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.42 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.39 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.33 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.3 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 87.28 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 87.24 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.2 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.2 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 87.19 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 87.13 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 87.09 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.05 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.05 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 86.87 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.85 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 86.77 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 86.77 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 86.71 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.7 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 86.7 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.7 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 86.64 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.59 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 86.58 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 86.49 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.34 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 86.31 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.27 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 86.26 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.13 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.05 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 86.03 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 85.91 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 85.91 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.87 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 85.86 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 85.83 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.62 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 85.58 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.57 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.51 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 85.48 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.32 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.28 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 85.14 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 85.12 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 85.12 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 84.88 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 84.85 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 84.72 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 84.69 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 84.57 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 84.48 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 84.43 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.33 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 84.32 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.25 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 83.97 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 83.89 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.88 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 83.71 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 83.69 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 83.69 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.66 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.64 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.29 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.23 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.98 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 82.82 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 82.27 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 82.16 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.1 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 82.08 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 81.89 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 81.69 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 81.68 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.6 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 81.3 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 81.13 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 81.1 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 80.9 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 80.86 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 80.66 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 80.33 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 80.29 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.3e-47 Score=407.01 Aligned_cols=214 Identities=22% Similarity=0.360 Sum_probs=186.7
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||+++|+ ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCCEEEEcceec
Confidence 378999998873 46799999999999999999999999999999999998774 489999999987
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHH
Q 000971 908 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1206)
Q Consensus 908 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 986 (1206)
.. ...+|.+|||+|++.+++++||+||+.|.+.++ ..++++.+++++++++.++|.+..++.+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred ccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 54 234567999999999999999999999987665 4577888899999999999999999874 57999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||+|||||+.+|+||+|||||+|||+.++..|++.|+++.++ |+|||++||++. ++.++|||+++|++ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 999999999997 68899999999996 79999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-47 Score=407.16 Aligned_cols=213 Identities=24% Similarity=0.362 Sum_probs=154.9
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||+++|. .+.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCCEEEECCEECC
Confidence 57899998873 46799999999999999999999999999999999998764 4899999999875
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ..+|.+|||+|++.+++.+||+||+.|+..++. .++++.+++++++++.++|.+..++.+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCchhhceeeeeccccccccchhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHH
Confidence 43 345679999999999999999999999876553 445677788999999999999999884 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+|||||+.+|++|||||||+|||+.++..|++.|+++.+ .|.|||++||++. ++..+|||+++|++ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 99999999999999999999999999999999999999865 5999999999987 68889999999985 799999985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2e-46 Score=403.38 Aligned_cols=214 Identities=25% Similarity=0.348 Sum_probs=192.7
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.+.++||+++|. +..+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p--~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred cEEEEeEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCCEEEECCEEe
Confidence 478999998873 46799999999999999999999999999999999998774 489999999875
Q ss_pred Ccc-------cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCC
Q 000971 908 KQE-------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1206)
Q Consensus 908 ~~~-------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 980 (1206)
... ..++.+|||+|++.++|.+||+||+.|...++ ..+.++.+++++++++.++|.+..++++ ..
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 321 12467999999999999999999999988776 3567888899999999999999988874 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
|||||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.++ |.|||++||+++ ++...|||+++|.+ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999766 999999999987 68889999999995 79
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
+++.|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999985
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.2e-47 Score=405.72 Aligned_cols=216 Identities=26% Similarity=0.387 Sum_probs=192.9
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++++||+++|+. +...+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEECC-----------CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC--CCceEEECCEEe
Confidence 3789999998852 246799999999999999999999999999999999998774 489999999875
Q ss_pred Cc------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCC
Q 000971 908 KQ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1206)
Q Consensus 908 ~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~L 981 (1206)
.. ...+|.+|||+|++.++|.+||+||+.|....+ ..++++.+++++++++.++|.+..++.+ ..|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCCh-----hhC
Confidence 32 223567999999999999999999999986543 4667888899999999999999999885 579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEE
Q 000971 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1206)
Q Consensus 982 SgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~ 1060 (1206)
||||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.++ |.|||++||+++ ++.++|||+++|++ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999655 999999999987 68899999999996 799
Q ss_pred EEEcCC
Q 000971 1061 IYVGPL 1066 (1206)
Q Consensus 1061 ~~~g~~ 1066 (1206)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEEcCH
Confidence 999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.4e-46 Score=397.34 Aligned_cols=219 Identities=22% Similarity=0.355 Sum_probs=191.0
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||+++|+... ....+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 2 I~i~nlsk~y~~~~---------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p--~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEeCCCC---------eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCC--CcceeEECCEEcC
Confidence 67899998886321 234689999999999999999999999999999999998764 4899999999864
Q ss_pred ccc-------ccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccccCCCCCCC
Q 000971 909 QET-------FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSG 980 (1206)
Q Consensus 909 ~~~-------~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~ 980 (1206)
... +++.+|||+|++.++|.+||+||+.|+..++.....+.+++.+++.++|+.++|.+ .++..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-----hh
Confidence 321 13469999999999999999999999887766566778888889999999999976 567663 57
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcE
Q 000971 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1206)
Q Consensus 981 LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~ 1059 (1206)
|||||||||+|||||+.+|+||||||||||||+.++..|++.|+++.++ |+|||++||+++ +.++|||+++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4589999999986 79
Q ss_pred EEEEcCC
Q 000971 1060 EIYVGPL 1066 (1206)
Q Consensus 1060 ~~~~g~~ 1066 (1206)
++..|.+
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEeccC
Confidence 9998864
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-46 Score=402.22 Aligned_cols=218 Identities=22% Similarity=0.285 Sum_probs=192.3
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
|+++||+++|... ....++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p--~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC--SEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCC---------CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccc--cCCceEEcCeEee
Confidence 6789999888632 1234699999999999999999999999999999999998774 5899999998763
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCC
Q 000971 909 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 909 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 982 (1206)
. ..+++.+|||+|++.+++.+||+||+.|...++ ..++++.++++.++|+.+||.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 124467999999999999999999999987654 2456677888999999999999988874 5799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~ 1061 (1206)
|||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.++ |.|||++||++. ++..+|||+++|++ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999776 999999999987 57789999999995 7999
Q ss_pred EEcCCC
Q 000971 1062 YVGPLG 1067 (1206)
Q Consensus 1062 ~~g~~~ 1067 (1206)
+.|++.
T Consensus 221 ~~G~~~ 226 (240)
T d3dhwc1 221 EQDTVS 226 (240)
T ss_dssp EEEETT
T ss_pred EECCHH
Confidence 999974
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.9e-46 Score=396.33 Aligned_cols=209 Identities=21% Similarity=0.282 Sum_probs=186.1
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
|+++||+++|. . .+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCCEEEEccEecc
Confidence 57899998873 1 389999999999999999999999999999999998774 4899999999875
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. ..+|.+|||+|++.++|++||+||+.|+..++... . +++++++++.++|.+..|+.+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred ccchhHhcceeeccccccCccccHHHHHHHHHhhcccc---H---HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhc
Confidence 42 24567999999999999999999999998776422 2 235899999999999998874 579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ .|.|||++||++. ++.+.|||+++|++ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred chhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999999999999999999865 5999999999997 68889999999986 799999985
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-45 Score=395.01 Aligned_cols=208 Identities=25% Similarity=0.358 Sum_probs=150.6
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-cceEEEecCCCCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (1206)
.+++|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.+||+++....+ +|.+|||+|++.++|.+|
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeeccccccccchh
Confidence 367999999999999999999999999999999999999998 9999999999987665 467999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
|+||+.|+..+++.. ..+.+..++++++.+||++.+|..+.
T Consensus 89 v~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~l~~~~~~~~~----- 129 (232)
T d2awna2 89 VAENMSFGLKLAGAK----------------------------------KEVINQRVNQVAEVLQLAHLLDRKPK----- 129 (232)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHhCCChhhhhCChh-----
Confidence 999999987655421 11234567889999999998886654
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+.. +++|+.++|+..++..+||+|++|++|+
T Consensus 130 ~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999987654 5556668899999999999999999999
Q ss_pred EEEecChHHHHH
Q 000971 403 IVYQGPRELVLE 414 (1206)
Q Consensus 403 iv~~G~~~~~~~ 414 (1206)
++++|+++++.+
T Consensus 209 iv~~G~~~el~~ 220 (232)
T d2awna2 209 VAQVGKPLELYH 220 (232)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEeCHHHHHh
Confidence 999999999854
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.2e-45 Score=394.38 Aligned_cols=206 Identities=25% Similarity=0.355 Sum_probs=176.9
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc-ceEEEecCCCCCCCCCCH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTV 243 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV 243 (1206)
..+|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++....+. |.+|||+|++.+||.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhcccchH
Confidence 56999999999999999999999999999999999999998 99999999999876654 679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccccc
Q 000971 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1206)
Q Consensus 244 ~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1206)
+||+.|++++++... .+.+..++++|+.+||++..|.. +..
T Consensus 96 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 136 (239)
T d1v43a3 96 YENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRY-----PAQ 136 (239)
T ss_dssp HHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSC-----TTT
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCC-----hhh
Confidence 999999876654311 12345678899999999877755 457
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeE
Q 000971 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1206)
Q Consensus 324 LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~i 403 (1206)
|||||||||+|||||+.+|+||+|||||+|||+.++.++++.|+++.+.. +++|+.++|+..++.++||+|++|++|++
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644 45566689999999999999999999999
Q ss_pred EEecChHHHH
Q 000971 404 VYQGPRELVL 413 (1206)
Q Consensus 404 v~~G~~~~~~ 413 (1206)
++.|+++++.
T Consensus 216 v~~G~~~el~ 225 (239)
T d1v43a3 216 LQIGSPTEVY 225 (239)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999984
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.5e-45 Score=388.81 Aligned_cols=202 Identities=25% Similarity=0.352 Sum_probs=181.1
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc-ceEEEecCCCCCCCCCCHH
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~ 244 (1206)
.+|+||||.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+. +.+|||+|++.+||.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeeccccccCccccHH
Confidence 3899999999999999999999999999999999999998 99999999999876654 5799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
||+.|+.+.++... ...++++++.+||.+..|..++ .|
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TL 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GS
T ss_pred HHHHHHHhhccccH-------------------------------------HHHHHHHHHHhcchhhHhCChh-----hC
Confidence 99999877654211 1235677899999988876654 69
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv 404 (1206)
||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+. .+++|+.++|+..++.++||+|++|++|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~-~g~tii~vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK-NKLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998764 4566677899999999999999999999999
Q ss_pred EecChHHHH
Q 000971 405 YQGPRELVL 413 (1206)
Q Consensus 405 ~~G~~~~~~ 413 (1206)
+.|+++++.
T Consensus 208 ~~g~~~el~ 216 (229)
T d3d31a2 208 QVGKPEEIF 216 (229)
T ss_dssp EEECHHHHH
T ss_pred EEcCHHHHH
Confidence 999999985
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-45 Score=391.07 Aligned_cols=207 Identities=22% Similarity=0.323 Sum_probs=183.7
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc------ceEEEecCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE------RTAAYISQHDN 236 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~------~~~~yv~Q~d~ 236 (1206)
...++|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.....+ +.+|||+|++.
T Consensus 16 ~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~ 92 (240)
T d3dhwc1 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92 (240)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCC
T ss_pred eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhccccccccccc
Confidence 4467999999999999999999999999999999999999998 99999999999776542 46999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccc
Q 000971 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1206)
Q Consensus 237 ~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1206)
++|.+||+||+.|+.+..+... .+....++++|+.+||++.+|..+
T Consensus 93 l~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~~ 138 (240)
T d3dhwc1 93 LLSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYP 138 (240)
T ss_dssp CCTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSCB
T ss_pred cCCCccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh
Confidence 9999999999999887654321 123446788999999998877555
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 317 g~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
+.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+.. +++|+.++|+..++..+||+|+
T Consensus 139 -----~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHdl~~~~~~~dri~ 212 (240)
T d3dhwc1 139 -----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVA 212 (240)
T ss_dssp -----SCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHH-CCEEEEEBSCHHHHHHHCSEEE
T ss_pred -----hhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEE
Confidence 4799999999999999999999999999999999999999999999987644 5666668999999999999999
Q ss_pred EEcCCeEEEecChHHH
Q 000971 397 LLSDGQIVYQGPRELV 412 (1206)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1206)
+|++|+|++.|+++++
T Consensus 213 vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 213 VISNGELIEQDTVSEV 228 (240)
T ss_dssp EEETTEEEEEEETTTT
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999999987
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.4e-45 Score=393.12 Aligned_cols=207 Identities=21% Similarity=0.285 Sum_probs=182.6
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCC-----c-cceEEEecCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----P-ERTAAYISQHDNH 237 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-----~-~~~~~yv~Q~d~~ 237 (1206)
.+.+|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... . ++.+|||+|++.+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 467999999999999999999999999999999999999998 999999999875422 1 3579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
||.+||+||+.|+.+..+... .+.+..++++++.+||++.+|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred cccccHHHHhhhhhHhhcCCH----------------------------------HHHHHHHHHHHhhcChHhhhhCChh
Confidence 999999999999876554211 1234567889999999988776654
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
.|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+.. +++|+.++|+..++.++||+|++
T Consensus 140 -----~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~-g~tvi~vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 -----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGV 213 (242)
T ss_dssp -----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred -----hCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHHhCCEEEE
Confidence 699999999999999999999999999999999999999999999987654 55666689999999999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|++++.|+++++.
T Consensus 214 m~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLY 229 (242)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999885
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1e-44 Score=389.96 Aligned_cols=206 Identities=27% Similarity=0.362 Sum_probs=182.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc-------cceEEEecCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1206)
.++|+|||+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccceecccchhh
Confidence 56999999999999999999999999999999999999998 9999999998754321 3679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCccccccccc
Q 000971 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1206)
Q Consensus 238 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1206)
+|.+||+||+.|+.+.++... .+.+..++++++.+||++..|..+
T Consensus 93 ~~~ltV~eni~~~~~~~~~~~----------------------------------~e~~~~v~~~l~~~~l~~~~~~~p- 137 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKP- 137 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCG-
T ss_pred cchhhhhHhhhhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCh-
Confidence 999999999999887654321 123456788999999998877655
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEE
Q 000971 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1206)
Q Consensus 318 ~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vil 397 (1206)
+.|||||||||+|||||+.+|+||+|||||+|||+.++.+|.+.|+++.+.. +++|+.++|+.+++..+||+|++
T Consensus 138 ----~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHd~~~~~~~~drv~v 212 (240)
T d1g2912 138 ----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAV 212 (240)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999987644 56666689999999999999999
Q ss_pred EcCCeEEEecChHHHH
Q 000971 398 LSDGQIVYQGPRELVL 413 (1206)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1206)
|++|++++.|+++++.
T Consensus 213 m~~G~iv~~G~~~el~ 228 (240)
T d1g2912 213 MNRGVLQQVGSPDEVY 228 (240)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999885
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.9e-44 Score=387.69 Aligned_cols=214 Identities=24% Similarity=0.327 Sum_probs=193.0
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.|..+||++++. ++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 2 aI~v~nl~k~yg-------------~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CEEEEeEEEEEC-------------CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECcEec
Confidence 378899998873 56899999999999999999999999999999999998774 489999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHH
Q 000971 908 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1206)
Q Consensus 908 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 985 (1206)
.. ...++.+|||||++.+++.+||.||+.|.+.++. .+.++.++.++++++.++|.+..+..+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred ccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhh-----hhCCHHH
Confidence 43 2346779999999999999999999999887763 356677788999999999999998885 4799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcC
Q 000971 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1206)
Q Consensus 986 rqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~ 1065 (1206)
|||++|||||+++|+||||||||+|||+.++..|+++|++++++|+|||++||+++ ++...|||+++|++ |++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999997 68889999999995 79999998
Q ss_pred C
Q 000971 1066 L 1066 (1206)
Q Consensus 1066 ~ 1066 (1206)
+
T Consensus 217 ~ 217 (238)
T d1vpla_ 217 V 217 (238)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-43 Score=387.50 Aligned_cols=214 Identities=21% Similarity=0.261 Sum_probs=187.8
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
|+++||+.+|. ..++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC--CCCCEEECCEEec
Confidence 78899998773 45799999999999999999999999999999999998764 4899999998764
Q ss_pred cc----------------cccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccc
Q 000971 909 QE----------------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQS 971 (1206)
Q Consensus 909 ~~----------------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~ 971 (1206)
.. ..++.+|||+|++.+++.+||.||+.|...... ..+.++.++++.++++.++|.+. .++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred cCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhcc
Confidence 21 234679999999999999999999998643222 34567778889999999999874 355
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeE
Q 000971 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051 (1206)
Q Consensus 972 ~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v 1051 (1206)
.+ ..|||||||||+|||||+.+|+||||||||+|||+.++..|++.|++++++|.|||++|||+. ++..+||||
T Consensus 146 ~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 YP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred Cc-----ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEE
Confidence 43 479999999999999999999999999999999999999999999999999999999999987 688899999
Q ss_pred EEEecCcEEEEEcCC
Q 000971 1052 FLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1052 ~ll~~gg~~~~~g~~ 1066 (1206)
++|++ |++++.|++
T Consensus 220 ~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 220 IFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEET-TEEEEEECH
T ss_pred EEEEC-CEEEEEcCH
Confidence 99985 799999986
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.1e-43 Score=385.15 Aligned_cols=213 Identities=23% Similarity=0.332 Sum_probs=185.8
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-|+.+||+++|. ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 6 ~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~i 70 (240)
T d1ji0a_ 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEeeEEEEEC-------------CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEeccccc
Confidence 588999998873 46799999999999999999999999999999999998764 489999999986
Q ss_pred Cccc---c-cceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc-CCccccccccCCCCCCCCC
Q 000971 908 KQET---F-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLS 982 (1206)
Q Consensus 908 ~~~~---~-~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~~g~~~~~~LS 982 (1206)
.... . +..++|++|+..+++.+||+||+.+.+..+.. .+..++.++++++.+ +|.+..++.+ ..||
T Consensus 71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LS 141 (240)
T d1ji0a_ 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred ccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhhChHHHHhCch-----hhCC
Confidence 5421 1 23489999999999999999999887654432 234455677788877 6888888875 4799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEE
Q 000971 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1206)
Q Consensus 983 gGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~ 1062 (1206)
|||||||+|||||+.+|+||||||||+|||+.++..|++.|++++++|+|||+++|++. ++.+.|||+++|++ |++++
T Consensus 142 GG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~ 219 (240)
T d1ji0a_ 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999989999999999987 68899999999996 79999
Q ss_pred EcCC
Q 000971 1063 VGPL 1066 (1206)
Q Consensus 1063 ~g~~ 1066 (1206)
.|++
T Consensus 220 ~g~~ 223 (240)
T d1ji0a_ 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred EcCH
Confidence 9986
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.9e-43 Score=376.74 Aligned_cols=206 Identities=23% Similarity=0.297 Sum_probs=174.3
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc-------ceEEEecCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-------RTAAYISQHD 235 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-------~~~~yv~Q~d 235 (1206)
+...+|+||||.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....++ +.+|||+|++
T Consensus 16 ~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~ 92 (230)
T d1l2ta_ 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92 (230)
T ss_dssp EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC
T ss_pred eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecch
Confidence 3467999999999999999999999999999999999999998 99999999999876543 3599999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcc-cccc
Q 000971 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADT 314 (1206)
Q Consensus 236 ~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt 314 (1206)
.++|.+||+||+.|+...+...... ..+....+.++|+.+||.+ .++.
T Consensus 93 ~l~~~~tv~eni~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~L~~~~~~~ 141 (230)
T d1l2ta_ 93 NLIPLLTALENVELPLIFKYRGAMS-------------------------------GEERRKRALECLKMAELEERFANH 141 (230)
T ss_dssp CCCTTSCHHHHHHHHHHTCCSSCCC-------------------------------HHHHHHHHHHHHHHTTCCGGGTTC
T ss_pred hhCcCccHHHHHhHHHHHhccCCCC-------------------------------HHHHHHHHHHHHHhhchhhhhhcC
Confidence 9999999999999988765322110 0122334667899999975 4554
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCe
Q 000971 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1206)
Q Consensus 315 ~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~ 394 (1206)
. +..|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+. .+++|+.++|+..++ ++||+
T Consensus 142 ~-----p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~-~g~tii~vTHd~~~a-~~~dr 214 (230)
T d1l2ta_ 142 K-----PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE-DGKTVVVVTHDINVA-RFGER 214 (230)
T ss_dssp C-----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEEECSCHHHH-TTSSE
T ss_pred C-----hhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHh-hCCEEEEECCCHHHH-HhCCE
Confidence 4 4579999999999999999999999999999999999999999999998764 455566677887655 89999
Q ss_pred EEEEcCCeEEEecCh
Q 000971 395 IILLSDGQIVYQGPR 409 (1206)
Q Consensus 395 vilL~~G~iv~~G~~ 409 (1206)
|++|++|+|++.|+.
T Consensus 215 v~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 215 IIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEeccC
Confidence 999999999999863
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-43 Score=387.32 Aligned_cols=218 Identities=24% Similarity=0.263 Sum_probs=189.7
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
-|..+||+.++. ..++|+||||++++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p--~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC--CCcEEEECCEec
Confidence 478899988773 46799999999999999999999999999999999998774 489999999986
Q ss_pred Cccc----ccceEEEeecCCCCCCCCCHHHHHHHhhhhcC----------CCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000971 908 KQET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRL----------PPEVDSETRKMFIEEVMELVELKPLIQSLV 973 (1206)
Q Consensus 908 ~~~~----~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~----------~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~ 973 (1206)
.... .++.++|++|++.+++.+||+||+.++...+. ......++..+++.++++.+++.+..++.+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred cchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch
Confidence 4322 23459999999999999999999998754321 122334555677899999999999998875
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEE
Q 000971 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053 (1206)
Q Consensus 974 g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~l 1053 (1206)
..|||||||||+|||||+.+|+||||||||+|||+.++..|++.|++++++|+|||+++|+++ ++.+.||||++
T Consensus 149 -----~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999889999999999998 68899999999
Q ss_pred EecCcEEEEEcCCC
Q 000971 1054 MKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1054 l~~gg~~~~~g~~~ 1067 (1206)
|++ |++++.|+..
T Consensus 223 m~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGE 235 (254)
T ss_dssp EET-TEEEEEEESH
T ss_pred EeC-CEEEEEecHH
Confidence 996 7999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1e-42 Score=372.72 Aligned_cols=199 Identities=24% Similarity=0.347 Sum_probs=174.8
Q ss_pred ceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc-ceEEEecCCCCCCCCCCHHHHHH
Q 000971 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTVRETLA 248 (1206)
Q Consensus 170 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~Etl~ 248 (1206)
|||+.++ +++++|+|||||||||||++|+|+++|+ +|+|.+||.++....+. +.+|||+|++.++|++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 7999995 6899999999999999999999999998 99999999999877664 67999999999999999999999
Q ss_pred HHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCChhh
Q 000971 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1206)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1206)
|+.+.. . + .+.+..++++++.+||.+..|..+ ..|||||
T Consensus 93 ~~l~~~--~----------~------------------------~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~ 131 (240)
T d2onka1 93 YGLRNV--E----------R------------------------VERDRRVREMAEKLGIAHLLDRKP-----ARLSGGE 131 (240)
T ss_dssp TTCTTS--C----------H------------------------HHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHH
T ss_pred hhhccc--C----------H------------------------HHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHH
Confidence 975311 0 0 112345788999999998877655 4799999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEEEecC
Q 000971 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1206)
Q Consensus 329 kkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv~~G~ 408 (1206)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+..++.++||+|++|++|++++.|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g-~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT-CCEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999876544 556668899999999999999999999999999
Q ss_pred hHHHHH
Q 000971 409 RELVLE 414 (1206)
Q Consensus 409 ~~~~~~ 414 (1206)
++++.+
T Consensus 211 ~~el~~ 216 (240)
T d2onka1 211 LKELFS 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999853
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.5e-43 Score=375.52 Aligned_cols=193 Identities=23% Similarity=0.372 Sum_probs=174.0
Q ss_pred cceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHH
Q 000971 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLLY 937 (1206)
Q Consensus 859 ~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~ 937 (1206)
||||++. ||++||+||||||||||+++|+|...+ .+|+|.++|.++... ..+|.+|||+|++.++|++||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 7999995 689999999999999999999998774 489999999987542 345679999999999999999999998
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000971 938 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017 (1206)
Q Consensus 938 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~ 1017 (1206)
+. + ..++.+++++++++++.+||.+..++.+ ..|||||||||+|||||+++|+||||||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hh--c---ccCHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 63 2 3456777889999999999999999884 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1018 IVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1018 ~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
.+++.|+++.++ |.|||++||++. ++.++|||+++|++ |+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecH
Confidence 999999999765 999999999997 68899999999985 799999985
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-42 Score=376.48 Aligned_cols=211 Identities=26% Similarity=0.416 Sum_probs=175.3
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.|+|+||+|+|+. +.+.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.+||.++
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CeEEEEEEEEeCC-----------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC--CCCEEEECCEEe
Confidence 3789999999852 245799999999999999999999999999999999998774 489999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccCCCC
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-------LIQSLVGLPG 977 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~~g~~~ 977 (1206)
.. ..+++.+|||+|++.+++ .||+||+.|+. ...+.+ .++++++..++.+ -.++.+|..
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVE----KVIYAAKLAGAHDFISELREGYNTIVGEQ- 136 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHH----HHHHHHHHHTCHHHHTTSTTGGGSBCSTT-
T ss_pred cccchhhhhceEEEEecccccCC-ccccccccccC-----ccccHH----HHHHHHHHHhhHHHHHhhhcchhhhcCCC-
Confidence 54 346778999999998775 69999998752 122222 3555566555543 334455543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecC
Q 000971 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1206)
Q Consensus 978 ~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~g 1057 (1206)
+..|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ |+|||++||+++ ....||+|++|++
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~- 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK- 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEET-
T ss_pred CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHHhCCEEEEEEC-
Confidence 468999999999999999999999999999999999999999999999864 899999999986 3578999999985
Q ss_pred cEEEEEcCC
Q 000971 1058 GQEIYVGPL 1066 (1206)
Q Consensus 1058 g~~~~~g~~ 1066 (1206)
|+++..|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999995
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=8.2e-43 Score=378.62 Aligned_cols=210 Identities=27% Similarity=0.403 Sum_probs=174.2
Q ss_pred EEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000971 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1206)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1206)
++++||+|+|+. .+.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.+||.++.
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC--CCCEEEECCEEec
Confidence 689999999851 23599999999999999999999999999999999998774 4899999999865
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------ccccccCCCCC
Q 000971 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-------LIQSLVGLPGV 978 (1206)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~~g~~~~ 978 (1206)
. ..+++.+|||+|++.+++. ||+||+.++.. ...+.+ .++++++..++.+ ..++.+|.. +
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDE----DLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheecccc----cccchh----hHHHHHHHHHhhhhhccCcccccccccCC-C
Confidence 4 3467789999999988875 99999976421 122222 3455666655543 334455544 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
..|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++. +|+|||+++|+++ ....||+|++|++ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999986 5899999999985 4467999999995 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
++++.|+.
T Consensus 214 ~iv~~G~~ 221 (242)
T d1mv5a_ 214 QITGSGKH 221 (242)
T ss_dssp EECCCSCH
T ss_pred EEEEECCH
Confidence 99999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3e-41 Score=364.91 Aligned_cols=209 Identities=26% Similarity=0.290 Sum_probs=183.1
Q ss_pred ccceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc--cceEEEecCCCCCCCC
Q 000971 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~ 240 (1206)
.+++||+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||||++.++++
T Consensus 13 g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ 89 (238)
T d1vpla_ 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89 (238)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTT
T ss_pred CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEeeeccccCCC
Confidence 3467999999999999999999999999999999999999998 9999999999865432 3679999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
+||+||+.|...+.+... .+....++.+++.++|.+..+..++
T Consensus 90 ltv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 132 (238)
T d1vpla_ 90 MQGIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS--- 132 (238)
T ss_dssp SBHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG---
T ss_pred ccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHhCCCHHHHhhhhh---
Confidence 999999999876543211 1223456778999999988887665
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
.|||||||||+||+||+++|++|||||||+|||+.++.++.+.|++++. . +++|+.++|..+++..+||+|++|++
T Consensus 133 --~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~-g~tii~~tH~l~~~~~~~drv~vl~~ 208 (238)
T d1vpla_ 133 --TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCDRIALIHN 208 (238)
T ss_dssp --GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999865 3 45666689999999999999999999
Q ss_pred CeEEEecChHHHHHH
Q 000971 401 GQIVYQGPRELVLEF 415 (1206)
Q Consensus 401 G~iv~~G~~~~~~~~ 415 (1206)
|++++.|+++++.+.
T Consensus 209 G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 209 GTIVETGTVEELKER 223 (238)
T ss_dssp TEEEEEEEHHHHHHH
T ss_pred CEEEEEcCHHHHHhc
Confidence 999999999999753
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-41 Score=366.27 Aligned_cols=209 Identities=24% Similarity=0.347 Sum_probs=168.3
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGE 240 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1206)
...+|+|||+.|++|+.++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+| .
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~ 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-N 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-T
T ss_pred CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhhceEEEEecccccC-C
Confidence 356999999999999999999999999999999999999997 9999999999987765 36899999998766 5
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
.||+|||.|+..... .+...+.++. ....-....+....+|.+|..+
T Consensus 91 ~Ti~eNi~~~~~~~~----~~~~~~~~~~-----------------------------~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 91 RSIIDNISLANPGMS----VEKVIYAAKL-----------------------------AGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp SBHHHHHCTTSTTCC----HHHHHHHHHH-----------------------------HTCHHHHTTSTTGGGSBCSTTT
T ss_pred ccccccccccCcccc----HHHHHHHHHH-----------------------------HhhHHHHHhhhcchhhhcCCCC
Confidence 699999988532110 1111111100 0001112345677889998764
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
..|||||||||+|||||+.+|+||+||||||+||+.+...|++.|+++.+ ++| ++.++|.... ...||+|++|++
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~T-vi~itH~l~~-~~~~D~i~vl~~ 212 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRT-VIIIAHRLST-VKNADRIIVMEK 212 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSE-EEEECSSGGG-GTTSSEEEEEET
T ss_pred -CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCE-EEEEECCHHH-HHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999998753 445 5557777654 578999999999
Q ss_pred CeEEEecChHHHHH
Q 000971 401 GQIVYQGPRELVLE 414 (1206)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1206)
|+|+++|+++++++
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=6.9e-42 Score=372.97 Aligned_cols=213 Identities=24% Similarity=0.381 Sum_probs=178.8
Q ss_pred CcEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000971 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1206)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 905 (1206)
...++|+||+|+|+. ....+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.+||.
T Consensus 14 ~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTE
T ss_pred CCEEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc--cccccccCCE
Confidence 346999999999852 234699999999999999999999999999999999998774 4899999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCC
Q 000971 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGL 975 (1206)
Q Consensus 906 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~ 975 (1206)
++.. ..+++.++||+|++.+++ .||+|||.|+. + ..+. +.+.++++.+++.+.. ++.+|.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC----c-CCCH----HHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 8654 346778999999998775 69999998752 1 2222 3467788888876543 444543
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEe
Q 000971 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1206)
Q Consensus 976 ~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~ 1055 (1206)
. ...||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. .++|||++||+++ ....||+|++|+
T Consensus 151 ~-g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~ 226 (255)
T d2hyda1 151 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE 226 (255)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE
T ss_pred C-CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHHhCCEEEEEE
Confidence 2 35799999999999999999999999999999999999999999999886 4899999999986 357899999998
Q ss_pred cCcEEEEEcCC
Q 000971 1056 RGGQEIYVGPL 1066 (1206)
Q Consensus 1056 ~gg~~~~~g~~ 1066 (1206)
+ |+++..|+.
T Consensus 227 ~-G~iv~~G~~ 236 (255)
T d2hyda1 227 N-GHIVETGTH 236 (255)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 5 899999985
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.4e-41 Score=368.47 Aligned_cols=205 Identities=23% Similarity=0.354 Sum_probs=175.3
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHIG 239 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1206)
.+++|+||||.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++....++ ..++|++|+..+|+
T Consensus 18 ~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~ 94 (240)
T d1ji0a_ 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhcccccCcccccCC
Confidence 357999999999999999999999999999999999999998 99999999999876543 24899999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHc-CCcccccccccC
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLEVCADTMVGD 318 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~ 318 (1206)
.+||+||+.+++....... ..+..++.+++.+ +|.+.++..++
T Consensus 95 ~ltv~en~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~- 138 (240)
T d1ji0a_ 95 ELTVYENLMMGAYNRKDKE-----------------------------------GIKRDLEWIFSLFPRLKERLKQLGG- 138 (240)
T ss_dssp TSBHHHHHHGGGTTCCCSS-----------------------------------HHHHHHHHHHHHCHHHHTTTTSBSS-
T ss_pred cccHHHHHHHHHHhcCCHH-----------------------------------HHHHHHHHHHHHhhChHHHHhCchh-
Confidence 9999999988764332110 0112234455555 67777776665
Q ss_pred cccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEE
Q 000971 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1206)
Q Consensus 319 ~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL 398 (1206)
.|||||||||+|||||+.+|++|+|||||+|||+.++.++++.|+++++ . +++|+.++|+.+++.++||+|++|
T Consensus 139 ----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~~tH~l~~~~~~~drv~vl 212 (240)
T d1ji0a_ 139 ----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKVAHYGYVL 212 (240)
T ss_dssp ----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHCSEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999999865 3 556666899999999999999999
Q ss_pred cCCeEEEecChHHHH
Q 000971 399 SDGQIVYQGPRELVL 413 (1206)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1206)
++|++++.|+++++.
T Consensus 213 ~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 213 ETGQIVLEGKASELL 227 (240)
T ss_dssp ETTEEEEEEEHHHHH
T ss_pred ECCEEEEEcCHHHHh
Confidence 999999999999875
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.4e-41 Score=368.46 Aligned_cols=206 Identities=22% Similarity=0.301 Sum_probs=176.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc----------------cceE
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----------------ERTA 228 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----------------~~~~ 228 (1206)
.++|+||||.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccHhHHHHHhcce
Confidence 56999999999999999999999999999999999999998 9999999999864322 2569
Q ss_pred EEecCCCCCCCCCCHHHHHHHHhh-hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcC
Q 000971 229 AYISQHDNHIGEMTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1206)
Q Consensus 229 ~yv~Q~d~~~~~lTV~Etl~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1206)
|||+|++.++|.+||+||+.|+.. ..+.. ..+....+.++++.+|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~ 137 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------------------------------KHDARERALKYLAKVG 137 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------------------------------HHHHHHHHHHHHHHTT
T ss_pred EEEEechhhccchhcchhhhhhHHHhcCCC----------------------------------HHHHHHHHHHHHHHcC
Confidence 999999999999999999998742 22110 0122345677899999
Q ss_pred Cccc-ccccccCcccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 000971 308 LEVC-ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386 (1206)
Q Consensus 308 L~~~-~dt~vg~~~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~ 386 (1206)
|.+. .+. ++..|||||||||+|||+|+.+|++|+|||||+|||+.++.+|++.|+++.+ .+ ++|+.++|+.+
T Consensus 138 l~~~~~~~-----~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g-~til~vtHdl~ 210 (258)
T d1b0ua_ 138 IDERAQGK-----YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMG 210 (258)
T ss_dssp CCHHHHTS-----CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT-CCEEEECSCHH
T ss_pred Cchhhhcc-----CcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cC-CceEEEeCCHH
Confidence 9764 343 3457999999999999999999999999999999999999999999999865 44 55666899999
Q ss_pred hHHhhcCeEEEEcCCeEEEecChHHHHH
Q 000971 387 ETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1206)
Q Consensus 387 ~~~~~fD~vilL~~G~iv~~G~~~~~~~ 414 (1206)
++..+||+|++|++|+|++.|+++++..
T Consensus 211 ~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 211 FARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999853
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-42 Score=374.16 Aligned_cols=216 Identities=22% Similarity=0.316 Sum_probs=173.8
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.++|+||+|+|+.. ....+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.+||.++
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEECCCC----------CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC--CcCEEEECCEec
Confidence 59999999998531 234699999999999999999999999999999999998874 489999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHH-----HHHHHHHHcCCccccccccCCCCCC
Q 000971 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKM-----FIEEVMELVELKPLIQSLVGLPGVS 979 (1206)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~-----~v~~~l~~l~L~~~~~~~~g~~~~~ 979 (1206)
.. ..+++.++||+|++.+++ .||+||+.|+... ........+ ...+.++ +|.+-.++.++.. +.
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred chhhhHHHHHHhhhccccccccC-cchhhhhhhhhcc----cchHHHHHHHHHHHHHHHHHH--hccccchhhHhcc-Cc
Confidence 54 345678999999998875 6999999886321 122222111 1112222 3333445555543 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEecCc
Q 000971 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1206)
Q Consensus 980 ~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~gg 1058 (1206)
.|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.++ |+|||++||+++ ..+.||+|++|++ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-T
T ss_pred cCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-C
Confidence 89999999999999999999999999999999999999999999998654 899999999975 4578999999985 7
Q ss_pred EEEEEcCC
Q 000971 1059 QEIYVGPL 1066 (1206)
Q Consensus 1059 ~~~~~g~~ 1066 (1206)
+++..|+.
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-41 Score=371.94 Aligned_cols=220 Identities=25% Similarity=0.360 Sum_probs=183.7
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc----ceEEEecCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHIG 239 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1206)
..++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+. +.++|++|++.+++
T Consensus 16 ~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~ 92 (254)
T d1g6ha_ 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 92 (254)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG
T ss_pred CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCccCCccccCC
Confidence 357999999999999999999999999999999999999998 99999999999876654 34999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCc
Q 000971 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1206)
Q Consensus 240 ~lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1206)
.+||+||+.++...++..... .+..+ ...+ ...+....++.+++.+++.+.+|..++
T Consensus 93 ~ltv~enl~~~~~~~~~~~~~----~~~~~----~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 149 (254)
T d1g6ha_ 93 EMTVLENLLIGEICPGESPLN----SLFYK----KWIP-------------KEEEMVEKAFKILEFLKLSHLYDRKAG-- 149 (254)
T ss_dssp GSBHHHHHHGGGTSTTSCHHH----HHHHC----SSCC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGG--
T ss_pred CCeeeeeeeehhhhccccchh----hhhhh----cccc-------------cHHHHHHHHHHHHHhcCcchhccCchh--
Confidence 999999999986554321110 00000 0000 011233456788999999998887766
Q ss_pred ccccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEc
Q 000971 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1206)
Q Consensus 320 ~~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~ 399 (1206)
.|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.. .+++|+.++|+.+++.++||+|++|+
T Consensus 150 ---~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~~~Drv~vm~ 224 (254)
T d1g6ha_ 150 ---ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMF 224 (254)
T ss_dssp ---GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred ---hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHHhCCEEEEEe
Confidence 5999999999999999999999999999999999999999999999854 35677779999999999999999999
Q ss_pred CCeEEEecChHHHHH
Q 000971 400 DGQIVYQGPRELVLE 414 (1206)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1206)
+|++++.|+++++.+
T Consensus 225 ~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 225 NGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTEEEEEEESHHHHH
T ss_pred CCEEEEEecHHHHhh
Confidence 999999999987643
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-41 Score=369.53 Aligned_cols=212 Identities=23% Similarity=0.376 Sum_probs=170.6
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc---ceEEEecCCCCCCCC
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGE 240 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~ 240 (1206)
+..+|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++.....+ +.++||+|++.+|+
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 101 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG- 101 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-
T ss_pred CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhccccccccC-
Confidence 456999999999999999999999999999999999999998 99999999999876653 67999999997775
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcc
Q 000971 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1206)
Q Consensus 241 lTV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1206)
.||+||+.|+..... . .....+... .....-...+|.+..+|.+++.
T Consensus 102 ~tv~eni~~g~~~~~--~-~~~~~~~~~-----------------------------~~~~~~~i~~l~~g~~~~i~~~- 148 (251)
T d1jj7a_ 102 RSLQENIAYGLTQKP--T-MEEITAAAV-----------------------------KSGAHSFISGLPQGYDTEVDEA- 148 (251)
T ss_dssp SBHHHHHHCSCSSCC--C-HHHHHHHHH-----------------------------HHTCHHHHHTSTTGGGCBCCSS-
T ss_pred cchhhhhhhhhcccc--h-HHHHHHHHH-----------------------------HHHHHHHHHhccccchhhHhcc-
Confidence 699999998643211 0 000000000 0001112346677788999864
Q ss_pred cccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
...|||||||||+|||||+.+|+|++||||||+||+.+...|++.|+++.+..+ ++++.++|.... .+.||+|++|++
T Consensus 149 ~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~-~Tvi~itH~l~~-~~~aDrI~vl~~ 226 (251)
T d1jj7a_ 149 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS-RSVLLITQHLSL-VEQADHILFLEG 226 (251)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGG-CEEEEECSCHHH-HHTCSEEEEEET
T ss_pred CccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcC-CEEEEEeCCHHH-HHhCCEEEEEEC
Confidence 458999999999999999999999999999999999999999999998765444 445557777754 577999999999
Q ss_pred CeEEEecChHHHHH
Q 000971 401 GQIVYQGPRELVLE 414 (1206)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1206)
|+|+++|+++++++
T Consensus 227 G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 227 GAIREGGTHQQLME 240 (251)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.3e-41 Score=369.63 Aligned_cols=213 Identities=23% Similarity=0.314 Sum_probs=177.3
Q ss_pred cEEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000971 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1206)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1206)
..|+|+||+|+|+. ....+|+||||.|++||++||+||||||||||+++|+|...+ .+|+|.+||.+
T Consensus 12 g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEE
T ss_pred eEEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC--CccEEEECCcc
Confidence 36999999999852 124699999999999999999999999999999999998774 48999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------ccccCCC
Q 000971 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1206)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 976 (1206)
+.. ..+++.++||+|++.++. .|+++|+.|+. +...+. +.++++++..++.+.. ++.++..
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~----~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~ 149 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGEN 149 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred cchhhhhhhhheEEEEeeccccCC-cchhhhhhhcC----cccCCH----HHHHHHHHHHhHHHHHHhccccchhhhcCC
Confidence 654 345678999999998775 69999998752 122232 3366777777765543 3445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 977 ~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
+..|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ |+|||++||+++ ..+.||+|++|++
T Consensus 150 -~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~~ 225 (253)
T d3b60a1 150 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED 225 (253)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred -CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999864 899999999986 3478999999985
Q ss_pred CcEEEEEcCC
Q 000971 1057 GGQEIYVGPL 1066 (1206)
Q Consensus 1057 gg~~~~~g~~ 1066 (1206)
|++++.|+.
T Consensus 226 -G~Iv~~G~~ 234 (253)
T d3b60a1 226 -GIIVERGTH 234 (253)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799999985
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.9e-41 Score=366.31 Aligned_cols=209 Identities=22% Similarity=0.314 Sum_probs=167.6
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|||+.|+||++++|+||||||||||+++|+|+++|+ +|+|.+||.++..... ++.++||+|++.+|+.
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG- 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEccccccCCc-
Confidence 45899999999999999999999999999999999999998 9999999999987654 4679999999887765
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+||+.++...... . +...+..+. +...-....+.+..+|.+|+.+
T Consensus 91 ti~eNi~~~~~~~~~--~-~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 91 TIRENLTYGLEGDYT--D-EDLWQVLDL-----------------------------AFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp EHHHHTTSCTTSCSC--H-HHHHHHHHH-----------------------------HTCTTTTTSSTTGGGCEESTTS-
T ss_pred chhhheecccccccc--h-hhHHHHHHH-----------------------------HHhhhhhccCcccccccccCCC-
Confidence 999999875432111 0 000000000 0000012345667789998764
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+|||||+.+|+||+||||||+||+.+...|++.|+++. .++| ++.++|....+ ..||+|++|++|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~T-vi~itH~l~~~-~~~D~i~vl~~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRT-TLVIAHRLSTI-VDADKIYFIEKG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSE-EEEECCSHHHH-HHCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc--CCCE-EEEEECCHHHH-HhCCEEEEEECC
Confidence 4799999999999999999999999999999999999999999999875 3455 45577776655 569999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
+|+++|+++++++
T Consensus 214 ~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 214 QITGSGKHNELVA 226 (242)
T ss_dssp EECCCSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.8e-40 Score=359.92 Aligned_cols=209 Identities=23% Similarity=0.382 Sum_probs=166.4
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc---ceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++.+.... +.++||+|++.+| ..
T Consensus 28 ~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 103 (253)
T d3b60a1 28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLF-ND 103 (253)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCC-SS
T ss_pred CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccccC-Cc
Confidence 46999999999999999999999999999999999999998 99999999999877643 5799999988666 46
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
|+++|+.|+..... . .+.+.+ ++...+ ....++ .|++..+|.+|+. .
T Consensus 104 ti~~n~~~~~~~~~--~-~~~i~~---------------------a~~~~~------l~~~i~--~l~~gl~t~~~~~-~ 150 (253)
T d3b60a1 104 TVANNIAYARTEEY--S-REQIEE---------------------AARMAY------AMDFIN--KMDNGLDTIIGEN-G 150 (253)
T ss_dssp BHHHHHHTTTTSCC--C-HHHHHH---------------------HHHTTT------CHHHHH--HSTTGGGSBCCTT-S
T ss_pred chhhhhhhcCcccC--C-HHHHHH---------------------HHHHHh------HHHHHH--hccccchhhhcCC-C
Confidence 99999998632110 0 011111 110000 011122 2455678999875 4
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+|||||+.+|+||+||||||+||+.+...|++.|+++.+ ++| ++.++|.... ...||+|++|++|
T Consensus 151 ~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~T-vi~itH~l~~-~~~~D~v~vl~~G 226 (253)
T d3b60a1 151 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRT-SLVIAHRLST-IEQADEIVVVEDG 226 (253)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSE-EEEECSCGGG-TTTCSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCE-EEEEECCHHH-HHhCCEEEEEECC
Confidence 58999999999999999999999999999999999999999999998752 444 5557777765 4789999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
+|+++|+++++++
T Consensus 227 ~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 227 IIVERGTHSELLA 239 (253)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.9e-40 Score=359.06 Aligned_cols=208 Identities=22% Similarity=0.363 Sum_probs=167.7
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCc---cceEEEecCCCCCCCCC
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1206)
.++|+|||+.|++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++.++.. ++.++||+|++.+| ..
T Consensus 31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ 106 (255)
T d2hyda1 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SD 106 (255)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SS
T ss_pred CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccCC-CC
Confidence 46899999999999999999999999999999999999998 9999999999987654 36899999998766 56
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCccc
Q 000971 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1206)
Q Consensus 242 TV~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1206)
||+|||.|+.... . .+.+. +++...+ ... ....|++..||.+|+..
T Consensus 107 Ti~eNi~~g~~~~---~-~~~~~---------------------~al~~~~------l~~--~i~~lp~gl~t~i~~~g- 152 (255)
T d2hyda1 107 TVKENILLGRPTA---T-DEEVV---------------------EAAKMAN------AHD--FIMNLPQGYDTEVGERG- 152 (255)
T ss_dssp BHHHHHGGGCSSC---C-HHHHH---------------------HHHHHTT------CHH--HHHTSTTGGGCBCCGGG-
T ss_pred CHHHHHhccCcCC---C-HHHHH---------------------HHHHHhC------CHH--HHHhccccccchhcCCC-
Confidence 9999998863211 0 01111 1100000 001 12356778899999765
Q ss_pred ccCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCC
Q 000971 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1206)
Q Consensus 322 ~~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G 401 (1206)
..|||||||||+|||||+.+|+||+||||||+||+.+...|++.|+++. .++|+| .++|.... ...||+|++|++|
T Consensus 153 ~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~TvI-~itH~~~~-~~~~D~ii~l~~G 228 (255)
T d2hyda1 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTL-IVAHRLST-ITHADKIVVIENG 228 (255)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEE-EECSSGGG-TTTCSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--cCCEEE-EEeCCHHH-HHhCCEEEEEECC
Confidence 4799999999999999999999999999999999999999999998864 345555 46776654 5789999999999
Q ss_pred eEEEecChHHHHH
Q 000971 402 QIVYQGPRELVLE 414 (1206)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1206)
+|++.|+++++++
T Consensus 229 ~iv~~G~~~eLl~ 241 (255)
T d2hyda1 229 HIVETGTHRELIA 241 (255)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-38 Score=343.36 Aligned_cols=193 Identities=23% Similarity=0.354 Sum_probs=167.3
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCCCCCCCCHH
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDIHSPFVTVY 932 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~~~~~~Tv~ 932 (1206)
+|++|||+|++||++||+||||||||||+++|+|... .+|+|.++|.++... ..+...+|++|+.......+++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 6999999999999999999999999999999999653 369999999976442 2344579999987766678999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 000971 933 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1005 (1206)
Q Consensus 933 e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~-------~P~iL~LD 1005 (1206)
+++.+...- +.+.+.++++++.+++.+..++.+ ..|||||||||+||++|++ +|+||+||
T Consensus 91 ~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQHD--------KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 998765321 123456889999999999888774 4799999999999999997 77999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1006 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
|||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.|||+++|++ |++++.|+.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~ 216 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 216 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999987 68999999999985 799999975
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.5e-38 Score=346.84 Aligned_cols=198 Identities=22% Similarity=0.328 Sum_probs=157.5
Q ss_pred ceEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHH
Q 000971 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1206)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1206)
.+||+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++| .++||+|++.+++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC----------EEEEEeccccccC-ceee
Confidence 46999999999999999999999999999999999999998 99999998 4899999987776 5999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccC
Q 000971 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1206)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1206)
||+.|+..... .+++ ...+ ..........+.+..+|.+|+.. ..|
T Consensus 115 eni~~~~~~~~--~~~~---~~~~-----------------------------~~~~~~~i~~l~~~~~~~~~~~~-~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYDE--YRYK---SVVK-----------------------------ACQLQQDITKFAEQDNTVLGEGG-VTL 159 (281)
T ss_dssp HHHTTTSCCCH--HHHH---HHHH-----------------------------HTTCHHHHTTSTTGGGCEECTTC-TTS
T ss_pred ccccccccccc--hHHH---HHHH-----------------------------HHHhHHHHHhchhhhhhhhhhhc-cCC
Confidence 99988643210 0111 0000 00111234566777788888654 479
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 000971 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1206)
Q Consensus 325 SGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~iv 404 (1206)
||||||||+|||||+.+|+||+|||||++||+.+..++++.+.... ..++|+ |.++|..+ ....||+|++|++|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tv-i~itH~~~-~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTR-ILVTSKME-HLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEE-EEECSCHH-HHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh-hCCCEE-EEEechHH-HHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999987543322 234555 44667664 56789999999999999
Q ss_pred EecChHHHHH
Q 000971 405 YQGPRELVLE 414 (1206)
Q Consensus 405 ~~G~~~~~~~ 414 (1206)
++|+++++..
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHhc
Confidence 9999999864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=7.5e-37 Score=323.04 Aligned_cols=195 Identities=21% Similarity=0.280 Sum_probs=162.4
Q ss_pred EEEEEeeEEEEecchhhhhcccccCceEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000971 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1206)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1206)
.|+++||++.|+ +++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.+||.++
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p--~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeC--------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc--CCCEEEECCEeh
Confidence 478999998874 2599999999999999999999999999999999998774 589999999987
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHH
Q 000971 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1206)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 987 (1206)
.. .+..++|++|+..++..+|+.|++.+.+.++.. ..+. ..+.+.++.+++.+..+. + ..|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~-~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDLKKK-L-----GELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCTTSB-G-----GGSCHHHHH
T ss_pred hH--hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccCH----HHHHHHHHHcCCcccccc-c-----CcCCCcHHH
Confidence 54 456789999999999999999999988776533 2222 236778888888765433 2 479999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHHhcCeEEEEec
Q 000971 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1206)
Q Consensus 988 rl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~p~~~i~~~~d~v~ll~~ 1056 (1206)
|++|||+|+.+|+||||||||+|||+.++..+++.|+++.++ |.+||++.|+. .+||.+..|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 999999999999999999999999999999999999998765 44455544542 46999998865
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.2e-37 Score=340.09 Aligned_cols=187 Identities=20% Similarity=0.331 Sum_probs=152.8
Q ss_pred eEEeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 000971 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1206)
Q Consensus 854 ~~vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 933 (1206)
++||+||||+|++||++||+||||||||||+++|+|...+ .+|.|.++|. ++||+|++.+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC--CCcEEEECCE----------EEEEeccccccC-ceeec
Confidence 5799999999999999999999999999999999998774 4899999982 799999998876 59999
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCC-------ccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000971 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVEL-------KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1006 (1206)
Q Consensus 934 ~l~~~a~lr~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDE 1006 (1206)
|+.|+.. .... ..+++++.+++ .+..+..++.. ...|||||||||+|||||+++|+||+|||
T Consensus 116 ni~~~~~------~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGVS------YDEY----RYKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred ccccccc------ccch----HHHHHHHHHHhHHHHHhchhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhCccchhhcC
Confidence 9987531 1222 23444444443 33445555543 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCC
Q 000971 1007 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1206)
Q Consensus 1007 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~ 1067 (1206)
|||+||+.+...|++.+......|+|||+++|+++ ..+.||||++|++ |++++.|+..
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEET-TEEEEEECHH
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999988764443456899999999974 5678999999995 7999999863
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-36 Score=326.02 Aligned_cols=198 Identities=25% Similarity=0.349 Sum_probs=167.9
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCcc---ceEEEecCCCCCCCCCC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMT 242 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lT 242 (1206)
++|+||||.|++||+++|+|||||||||||++|+|.. ++ +|+|.++|+++.....+ ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHHHHHhhceeeeccccCCcccc
Confidence 3699999999999999999999999999999999975 44 89999999988766543 35799999877777789
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccc
Q 000971 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1206)
Q Consensus 243 V~Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1206)
+.+++.+...-+ .....++++++.++|.+..+..+.
T Consensus 89 v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~----- 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRSTN----- 124 (231)
T ss_dssp HHHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBGG-----
T ss_pred HHHHhhhccchh---------------------------------------hHHHHHHHHHHhcCCHhHhCcChh-----
Confidence 999998753211 012245677889999987776554
Q ss_pred cCChhhhhHHHHHHHHhc-------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeE
Q 000971 323 GISGGERKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~-------~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~v 395 (1206)
.|||||||||+||++|+. +|+||+|||||+|||+.++..+.+.|+++.. . +++|+.++|..+++.++||+|
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-Q-GLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-T-TCEEEECCCCHHHHHHHCSBC
T ss_pred hcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHCCEE
Confidence 699999999999999986 6799999999999999999999999999864 3 556666889999999999999
Q ss_pred EEEcCCeEEEecChHHHH
Q 000971 396 ILLSDGQIVYQGPRELVL 413 (1206)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1206)
++|++|++++.|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999999874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.1e-34 Score=301.92 Aligned_cols=183 Identities=19% Similarity=0.240 Sum_probs=151.4
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCCCCHHH
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1206)
+||+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+||+++... +..++|++|+..+...+|+.|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHh--cCcEEEEeecccCCCCcCHHH
Confidence 5999999999999999999999999999999999999998 99999999998653 457999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhHHHHHHHHHHHcCCcccccccccCcccccCC
Q 000971 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1206)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1206)
++.+.+...+.... ...+...++.+++.+.. ..+ ..||
T Consensus 90 ~l~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~~~~-~~~-----~~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVN------------------------------------KNEIMDALESVEVLDLK-KKL-----GELS 127 (200)
T ss_dssp HHHHHHHHTTCCCC------------------------------------HHHHHHHHHHTTCCCTT-SBG-----GGSC
T ss_pred HHHHHHHhcCCccC------------------------------------HHHHHHHHHHcCCcccc-ccc-----CcCC
Confidence 99987765432110 01123456666665432 233 4699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcC
Q 000971 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1206)
Q Consensus 326 GGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~ 400 (1206)
|||||||+||++|+.+|++++|||||+|||+.++..+++.|+++.+. ++++|++.||+. ++||.+.+|++
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC-CCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999999999999999999999999988764 467777666653 57999998864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.31 E-value=4e-14 Score=144.90 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=60.6
Q ss_pred cCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEEEEcCCe
Q 000971 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1206)
Q Consensus 323 ~LSGGqkkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vilL~~G~ 402 (1206)
.+|+|+++|.++++++..+|+++++|||.... .....+.+.|.+.....+ ++++.++|.. ....++|++..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~-~~il~~~h~~-~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPN-VNVVATIPIR-DVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTT-SEEEEECCSS-CCSHHHHHHHTCTTCE
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCC-CEEEEEEccH-HHHHhhceEEEEeCCE
Confidence 48999999999999999999999999985443 334556666666554334 4444455543 4667889999999999
Q ss_pred EEEecC
Q 000971 403 IVYQGP 408 (1206)
Q Consensus 403 iv~~G~ 408 (1206)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
Confidence 987653
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.31 E-value=1.7e-13 Score=140.11 Aligned_cols=157 Identities=15% Similarity=0.045 Sum_probs=96.3
Q ss_pred EEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecC--CCC--CCCCCHHHHHHHhhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQN--DIH--SPFVTVYESLLYSAWLRLP 944 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~--~~~--~~~~Tv~e~l~~~a~lr~~ 944 (1206)
.++|+||||||||||+++|+|...+ ..|.+.+.+.+...... ..++.... ... ....+..+...+ . +
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKK--RTGFRIITTEGKKKIFSSKFFTSKKLV-G--S-- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC--------CCEEEEEETTCCEEEEEETTCCCSSEE-T--T--
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCC--CcceEEECCcchHHHHH--hhhhhhhhhhHHHHHHhhhhhhhhhhh-h--h--
Confidence 4899999999999999999997653 36888887755332211 12221111 000 000000000000 0 0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 000971 945 PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024 (1206)
Q Consensus 945 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~ 1024 (1206)
.....+ ...+|+|+++|.++++++..+|++|++|||+...+ ....+...|.
T Consensus 73 ~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~ 123 (178)
T d1ye8a1 73 YGVNVQ---------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVR 123 (178)
T ss_dssp EEECHH---------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHH
T ss_pred hhcCcc---------------------------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHH
Confidence 000000 11378999999999999999999999999854433 3344555566
Q ss_pred HHHh-CCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCC
Q 000971 1025 NTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1206)
Q Consensus 1025 ~~~~-~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~ 1066 (1206)
++.+ .+.|||+++|+.+ ....+|++..+. +|+++.-++.
T Consensus 124 ~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 124 QIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp HHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTT
T ss_pred HHhccCCCEEEEEEccHH--HHHhhceEEEEe-CCEEEEECCc
Confidence 5544 4899999999975 456788888886 5788776654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.79 E-value=7.1e-08 Score=106.53 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHHH----hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEE
Q 000971 979 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL----~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll 1054 (1206)
..+|.|||+.+.++..+ ..+|+++++|||-++|++.....+.+.|++..+ +.-||+|||.|. +.+.+|++..+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEEE
Confidence 56999999998887754 346789999999999999999999999998864 678999999996 57889998663
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.42 E-value=5.1e-07 Score=99.41 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=59.7
Q ss_pred cccCChhhhhHHHHHHH----HhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 321 IRGISGGERKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~----l~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
...+|+|||+.+.++.. ...+++++++|||-++|++.....+.+.|++.+. +.-+|++ .+++++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~Qviit--THsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVI--THNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEE--CCCTTGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEE--ECCHHHHHhcccEE
Confidence 45799999999887644 3457789999999999999999999999998753 3334433 34568889999986
Q ss_pred E--EcCC
Q 000971 397 L--LSDG 401 (1206)
Q Consensus 397 l--L~~G 401 (1206)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 5566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=1.7e-07 Score=107.96 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHH----hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEE
Q 000971 979 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1206)
Q Consensus 979 ~~LSgGqrqrl~ia~aL----~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll 1054 (1206)
..||||||.++++|.-+ +.++++++||||+++||+.....+.+.|+++...+.-+|||||+|. +.+.+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhcccEEEE
Confidence 45899999998877544 3567799999999999999999999999988655677999999984 78899997755
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.84 E-value=1.3e-05 Score=91.53 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=58.8
Q ss_pred cccCChhhhhHHHHHHHH----hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHhhcCeEE
Q 000971 321 IRGISGGERKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1206)
Q Consensus 321 ~~~LSGGqkkRvsia~~l----~~~~~vlllDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~~~~fD~vi 396 (1206)
+..+|||||.++++|-.+ +.++++++||||+++||+.....+.+.|++++. ..+-+|+++|. +.+.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I~iTH~-~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEE
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEeCC-HHHHHhcccEE
Confidence 467899999998887433 467789999999999999999999999987643 34445545554 46889999987
Q ss_pred EE
Q 000971 397 LL 398 (1206)
Q Consensus 397 lL 398 (1206)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.43 E-value=0.00022 Score=74.00 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=30.8
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEEec
Q 000971 339 VGPALALFMDEISTGLDSSTTFQIVNC-LKQHVHINSGTAVISLLQ 383 (1206)
Q Consensus 339 ~~~~~vlllDEptsgLDs~t~~~i~~~-L~~~~~~~~~t~vi~i~q 383 (1206)
+++..++++||+.+|=|+.....+... +..+.. .+..++++.|+
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~ 156 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHY 156 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCC
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEEeeec
Confidence 355579999999999999988888764 444443 45555554443
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.43 E-value=0.00054 Score=70.95 Aligned_cols=59 Identities=8% Similarity=0.173 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCCchHHHHh
Q 000971 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIV-MRTVRNTVDTGRTVVCTIHQPGIDIFDA 1047 (1206)
Q Consensus 987 qrl~ia~aL~~~P~iL~LDEPTsgLD~~~~~~i-~~~l~~~~~~g~tvi~~~H~p~~~i~~~ 1047 (1206)
+|+.-....+.+.+++++||+..|=|+.....+ ..++..+.+.+..++++||.. ++...
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence 333333334456679999999999999776554 445556677789999999985 45443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.00028 Score=73.78 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=30.9
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEEecC
Q 000971 339 VGPALALFMDEISTGLDSSTTFQIVNC-LKQHVHINSGTAVISLLQP 384 (1206)
Q Consensus 339 ~~~~~vlllDEptsgLDs~t~~~i~~~-L~~~~~~~~~t~vi~i~q~ 384 (1206)
..+.+++++||+.+|=++.....+... +..+... .+..++..+|.
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~-~~~~~i~tTH~ 163 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK-IKALTLFATHY 163 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-TCCEEEEECSC
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhcc-ccceEEEecch
Confidence 345579999999999999999888764 5555443 33344444444
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.0014 Score=68.19 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=36.4
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCCch
Q 000971 995 LVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDT-GRTVVCTIHQPGI 1042 (1206)
Q Consensus 995 L~~~P~iL~LDEPTsgLD~~~~~~i~-~~l~~~~~~-g~tvi~~~H~p~~ 1042 (1206)
-+.+.+++++||+..|=++.....+. ..+..+... ++.+|+++|....
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 34556799999999999998876664 456667554 5789999998653
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.14 E-value=0.0018 Score=69.01 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=28.2
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhc
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~ 888 (1206)
-|+++.+=++||+++.|.|++|+|||||+.-|+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 466666668999999999999999999987776
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.64 E-value=0.0036 Score=64.99 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=26.4
Q ss_pred eeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 172 s~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
.|=+++|+++.|.||||||||||+.-++-.
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 356999999999999999999999877654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.59 E-value=0.0005 Score=70.83 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVT 213 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~ 213 (1206)
+|+.++++|+||+|||||+|+|.|...-. +|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 36788999999999999999999976543 66664
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.53 E-value=0.00061 Score=67.02 Aligned_cols=27 Identities=44% Similarity=0.565 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.|++++|.|||||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998864
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00046 Score=67.51 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
+++|.|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.30 E-value=0.00084 Score=69.08 Aligned_cols=26 Identities=27% Similarity=0.635 Sum_probs=23.7
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
+|..++++|+||+|||||+|.|.|..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 57899999999999999999999854
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.29 E-value=0.00074 Score=67.48 Aligned_cols=26 Identities=38% Similarity=0.714 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
|+++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999998765
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.00012 Score=73.83 Aligned_cols=32 Identities=28% Similarity=0.251 Sum_probs=27.7
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhc
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~ 888 (1206)
-+++.++.+.+| ++.|+|||||||||+|++|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 356677888777 99999999999999999986
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.00075 Score=66.13 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=25.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+.+.++.|+|||||||||+.+.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998764
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.00014 Score=73.30 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=28.8
Q ss_pred eeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 168 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+++.++.+.+| +++|+|||||||||+|.||.-.+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 46677788776 99999999999999999997544
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.18 E-value=0.00074 Score=66.26 Aligned_cols=38 Identities=26% Similarity=0.205 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG 216 (1206)
++++|+|++|||||||++.|..++......-|.|..++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 47899999999999999999988764322234444443
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.09 E-value=0.001 Score=66.34 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.6
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
|.++.|+||||||||||++.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999997643
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.011 Score=62.30 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=33.2
Q ss_pred HHhhCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhC-CCEEEEEecC
Q 000971 994 ELVANPSIIFMDEPTS-----GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1039 (1206)
Q Consensus 994 aL~~~P~iL~LDEPTs-----gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~ 1039 (1206)
+-..+|+++++|--++ --|......+++.|+.+++. |+|||++.|.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457999999995432 12556666778888877654 8999999884
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.04 E-value=0.00057 Score=70.62 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVT 213 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~ 213 (1206)
+|+.++++|+||+|||||+|+|.|...-. +|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 36788999999999999999999986543 66665
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.025 Score=59.51 Aligned_cols=47 Identities=9% Similarity=0.079 Sum_probs=31.9
Q ss_pred HhcCCccceeecCCCC-----CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCc
Q 000971 338 MVGPALALFMDEISTG-----LDSSTTFQIVNCLKQHVHINSGTAVISLLQPA 385 (1206)
Q Consensus 338 l~~~~~vlllDEptsg-----LDs~t~~~i~~~L~~~~~~~~~t~vi~i~q~~ 385 (1206)
...+++++++|--+.- -|......+++.|+.++...+ ++|+.+||..
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~~vi~v~H~~ 180 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG-CSIVFLHHAS 180 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC-CEEEEEEEC-
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCC-Cceehhhhcc
Confidence 3468899999966532 266667788888888887655 4555567754
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.96 E-value=0.0013 Score=64.90 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+.++|.||+|||||||.+.|+-.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.93 E-value=0.0017 Score=63.66 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=25.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++|.++.|.|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999997764
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.92 E-value=0.051 Score=55.15 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=27.0
Q ss_pred Eeece-eeeEeCCeEEEEEcCCCCcHHHHHHHHH
Q 000971 167 ILKDV-SGIIKPGRMTLLLGPPASGKTTLLLALA 199 (1206)
Q Consensus 167 iL~~v-s~~i~~G~~~~ilGp~GsGKSTLL~~La 199 (1206)
-|+++ +|=+++|+++.|.|+||+|||||+.-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 45553 4679999999999999999999986544
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.91 E-value=0.0015 Score=63.63 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.+++|.|||||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998764
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.90 E-value=0.0018 Score=61.94 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
+++.|.||||||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999988643
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.0014 Score=63.95 Aligned_cols=22 Identities=45% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+++|+|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999863
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.76 E-value=0.07 Score=54.04 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=37.8
Q ss_pred hCCcEEEEeCCCCCC----C-HHHHHHHHHHHHHHHhCCCEEEEEecCCch--------HHHHhcCeEEEEe
Q 000971 997 ANPSIIFMDEPTSGL----D-ARAAAIVMRTVRNTVDTGRTVVCTIHQPGI--------DIFDAFDELFLMK 1055 (1206)
Q Consensus 997 ~~P~iL~LDEPTsgL----D-~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~--------~i~~~~d~v~ll~ 1055 (1206)
.+|+++++|=-+.-. + ......+...++.+++.|+|++++.|.... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 479999999665432 2 233334445555555669999999996532 2344678888774
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0012 Score=65.01 Aligned_cols=26 Identities=46% Similarity=0.677 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
+.+.|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 35789999999999999999998764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.75 E-value=0.001 Score=68.72 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=22.4
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCCCCCeeEEEEE
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNIT 901 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~i~ 901 (1206)
+|..++++|+||+|||||+|.|.|... ..+|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence 477889999999999999999998532 2245554
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.72 E-value=0.002 Score=63.04 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.7
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.|+++.|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999754
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.70 E-value=0.0021 Score=62.89 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++|-.++|.|||||||||+.+.|+-.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3566789999999999999999998764
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.61 E-value=0.0023 Score=62.46 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.+++.|.|||||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56889999999999999999999875
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0029 Score=63.81 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=27.1
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
|=+++|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 679999999999999999999998887654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.56 E-value=0.0026 Score=61.99 Aligned_cols=22 Identities=55% Similarity=0.608 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|+|||||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999765
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0032 Score=64.13 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.|.++.|+||||||||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999987654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.45 E-value=0.0029 Score=63.51 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.++|+|++|||||||+++|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999963
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.0031 Score=61.48 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.9
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
+.+.++.|+||+||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998653
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.33 E-value=0.0026 Score=62.21 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=25.7
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC-CCCeeEEEEEEcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK-TGGYITGNITISG 904 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~-~~~~~~G~i~i~g 904 (1206)
+++|+|++|||||||+.-|..+. ..|...|-|.-++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 68999999999999999887642 2233345554444
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.0032 Score=64.14 Aligned_cols=25 Identities=36% Similarity=0.520 Sum_probs=22.4
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.|.++.|+||||+|||||++.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999998753
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.019 Score=60.14 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.0
Q ss_pred CeEEEEEccCCCcHHHHHhhhcC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
..-+-|.||+|+|||+|.+.|+.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHH
Confidence 34467999999999999999995
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.28 E-value=0.003 Score=63.45 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+.+.++.|+|||||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999765
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.22 E-value=0.0043 Score=61.06 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++++|.|++||||||+.+.|+-++.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5889999999999999999987764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.18 E-value=0.0038 Score=61.02 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=24.1
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
++|-++.|+|++||||||+-+.|+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998643
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.18 E-value=0.0046 Score=61.95 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999999754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.15 E-value=0.0044 Score=65.22 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
..+++.||||||||||.++|++.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 46889999999999999999998753
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.14 E-value=0.0038 Score=62.60 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.+||||++|||||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999854
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.11 E-value=0.0044 Score=64.09 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++|+||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 589999999999999999986543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.11 E-value=0.0035 Score=70.64 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=34.5
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000971 991 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPG 1041 (1206)
Q Consensus 991 ia~aL~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~ 1041 (1206)
|..+|=.+|++|++.|.. |..++...+ +.+.+|+-|+.|.|-.+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc
Confidence 455677899999999997 666665544 45668999999999765
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.05 E-value=0.0052 Score=61.30 Aligned_cols=27 Identities=41% Similarity=0.609 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|-.+.|+|||||||||+-+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 356667789999999999999999654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.005 Score=58.97 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.+.|+|||||||||+-+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 367789999999999999998764
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.0037 Score=62.28 Aligned_cols=27 Identities=37% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.|.++.|.|+|||||||+-+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999997764
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.91 E-value=0.006 Score=61.18 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
-.+++|+|||||||||+.+.|+-.+.
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998763
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.90 E-value=0.015 Score=60.67 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
-+-|.||.|+|||+|.++|+..
T Consensus 44 giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHH
Confidence 3679999999999999999963
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.89 E-value=0.0051 Score=60.74 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|+|+||+|||||+++|.|..
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999963
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.86 E-value=0.072 Score=54.53 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=38.3
Q ss_pred hCCcEEEEeCCCC---CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCC---------chHHHHhcCeEEEEe
Q 000971 997 ANPSIIFMDEPTS---GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQP---------GIDIFDAFDELFLMK 1055 (1206)
Q Consensus 997 ~~P~iL~LDEPTs---gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~p---------~~~i~~~~d~v~ll~ 1055 (1206)
.+|+++++|--+. +.+.......+..|.+++ +.++|++++.|.. +..+...+|-++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4689999996443 345555555555555544 5699999998842 112456789888875
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.85 E-value=0.006 Score=60.13 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHc
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG 200 (1206)
++-+++.++|+|||||||+.+.|+-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456999999999999999998864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.80 E-value=0.0066 Score=59.36 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.80 E-value=0.0051 Score=60.35 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.1
Q ss_pred eEEEEEccCCCcHHHHHhhhcCCC
Q 000971 868 VLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..++|+||+|+|||||.+.|+...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999643
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.80 E-value=0.0041 Score=61.72 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|+|++|||||+++|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999875
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.79 E-value=0.0059 Score=60.18 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+.|+|||||||||+.+.|+-.+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 57999999999999999987753
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.78 E-value=0.0059 Score=59.46 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=23.5
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
++|-.++|+||+||||||+.+.|+-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998643
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.76 E-value=0.0041 Score=67.78 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=28.1
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~~~ 205 (1206)
..++.|.-++|.||.||||||||++|++.+++.
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 344556678999999999999999999999875
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.75 E-value=0.0047 Score=61.32 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=19.7
Q ss_pred EEEEccCCCcHHHHHhhhcCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.0071 Score=60.44 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+++|+|||||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999765
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.63 E-value=0.0061 Score=60.14 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999853
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.61 E-value=0.0071 Score=60.09 Aligned_cols=24 Identities=38% Similarity=0.325 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999986654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.59 E-value=0.0067 Score=60.46 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+.|+|||||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999998765
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.58 E-value=0.0067 Score=57.76 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.2
Q ss_pred eEEEEEccCCCcHHHHHhhhcC
Q 000971 868 VLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998753
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.53 E-value=0.007 Score=61.00 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.++|+|+||||||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999863
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.47 E-value=0.0085 Score=61.71 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=26.3
Q ss_pred eeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 172 s~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
.|=+++|+++.|.||||||||||..-++-.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356999999999999999999999877643
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.46 E-value=0.0077 Score=57.55 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999999864
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.43 E-value=0.0085 Score=59.27 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
-++|+|++|+|||||+++|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999863
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.42 E-value=0.008 Score=57.45 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|+|++|+|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.41 E-value=0.0086 Score=58.16 Aligned_cols=23 Identities=48% Similarity=0.586 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+.|+|+|||||||+.++||-.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999998864
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.0094 Score=59.01 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++.|+||||||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5789999999999999999986644
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.37 E-value=0.0086 Score=59.64 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++|+||||||||||++.|+-..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999987765
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.0089 Score=57.53 Aligned_cols=25 Identities=36% Similarity=0.741 Sum_probs=22.2
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
|=.++|+|++|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999854
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.33 E-value=0.0088 Score=59.16 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+.|+|||||||||+.+.|+-.+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67899999999999999997753
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.28 E-value=0.0078 Score=59.81 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
++||-||+|||||||.+.|+-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999974
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.011 Score=57.97 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 000971 180 MTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
.++|+|.+|+|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999986
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.011 Score=56.72 Aligned_cols=23 Identities=43% Similarity=0.713 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
-++|+|++|+|||||+++|.|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999874
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.21 E-value=0.0096 Score=58.34 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.++|+|.+|+|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.20 E-value=0.011 Score=58.12 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.18 E-value=0.0094 Score=57.88 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.1
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
..++.|.|++||||||+.+.|+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4588999999999999999999754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.16 E-value=0.0075 Score=59.09 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
-++|+|++|+|||||++.|.|..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999998864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.16 E-value=0.0082 Score=59.83 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=19.0
Q ss_pred EEEEccCCCcHHHHHhhhcCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+.|+||||||||||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999754
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.0094 Score=59.04 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.3
Q ss_pred eEEEEEccCCCcHHHHHhhhcCC
Q 000971 868 VLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
..+.|+||||+|||||++-|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998753
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.12 E-value=0.0074 Score=59.51 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|+|++|+|||||++.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999863
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.12 E-value=0.0095 Score=58.18 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.09 E-value=0.0097 Score=57.50 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.1
Q ss_pred eEEEEEccCCCcHHHHHhhhcCCC
Q 000971 868 VLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999998643
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.01 Score=58.49 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+.|+|||||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998664
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.07 E-value=0.011 Score=58.40 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+.|+|||||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999764
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.05 E-value=0.011 Score=59.11 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+.|+||||||||||++.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987654
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.05 E-value=0.011 Score=58.30 Aligned_cols=22 Identities=59% Similarity=0.878 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+.|+|||||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999765
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.03 E-value=0.011 Score=59.02 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.++|+|||||||||+-+.|+-.+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHC
Confidence 356889999999999999997653
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.02 E-value=0.0079 Score=59.33 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHhhhcCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+||+|.+|+|||||+|.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999984
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.01 E-value=0.0085 Score=59.06 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
+++.|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999988753
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.00 E-value=0.012 Score=58.02 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.5
Q ss_pred eEEEEEccCCCcHHHHHhhhcCCC
Q 000971 868 VLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
=.+||+|.+|+|||||++.|+|..
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999854
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.00 E-value=0.012 Score=59.15 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.+++++|.||||||||.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999997654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.98 E-value=0.04 Score=57.94 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCC----------CHHHHHHHHHHHHHH---H-hCCCEEEEEecCCchHHHHhcCe
Q 000971 985 QRKRLTIAVELVANPSIIFMDEPTSGL----------DARAAAIVMRTVRNT---V-DTGRTVVCTIHQPGIDIFDAFDE 1050 (1206)
Q Consensus 985 qrqrl~ia~aL~~~P~iL~LDEPTsgL----------D~~~~~~i~~~l~~~---~-~~g~tvi~~~H~p~~~i~~~~d~ 1050 (1206)
++-|-.+..|-...|.||++||--.=+ .....+.+...+..+ . +.+.-||+||++|.. + |.
T Consensus 87 ~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~-l----d~ 161 (265)
T d1r7ra3 87 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI-I----DP 161 (265)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTT-T----SC
T ss_pred HHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchh-C----CH
Confidence 333444666677899999999964322 222222333333332 2 236788999999873 2 22
Q ss_pred EEEEecC--cEEEEEcCCCcc
Q 000971 1051 LFLMKRG--GQEIYVGPLGRH 1069 (1206)
Q Consensus 1051 v~ll~~g--g~~~~~g~~~~~ 1069 (1206)
-+ +..| .+.++++++...
T Consensus 162 al-~r~gRf~~~i~~~~p~~~ 181 (265)
T d1r7ra3 162 AI-LRPGRLDQLIYIPLPDEK 181 (265)
T ss_dssp GG-GSSTTSEEEEECCCCCCH
T ss_pred HH-hCCCCccEEEEecchHHH
Confidence 22 1222 256778887653
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.98 E-value=0.011 Score=56.80 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++|+|++|+|||||++.+.+.-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999988643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.95 E-value=0.012 Score=57.50 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+.|+|+|||||||+-+.||-.+.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999997764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.94 E-value=0.015 Score=60.27 Aligned_cols=28 Identities=39% Similarity=0.446 Sum_probs=24.5
Q ss_pred eeeEeCCeEEEEEcCCCCcHHHHHHHHH
Q 000971 172 SGIIKPGRMTLLLGPPASGKTTLLLALA 199 (1206)
Q Consensus 172 s~~i~~G~~~~ilGp~GsGKSTLL~~La 199 (1206)
.|=+++|+++.|.||||||||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred cCCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 3569999999999999999999987554
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.90 E-value=0.012 Score=57.92 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.01 Score=58.00 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999974
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.86 E-value=0.01 Score=57.44 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+.|+||+||||||+.+.|+-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999854
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.84 E-value=0.011 Score=57.87 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++|+|++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999874
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.83 E-value=0.011 Score=57.92 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999854
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.82 E-value=0.012 Score=56.83 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++|+|++|||||||++.|.|...
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHcCCCC
Confidence 67999999999999999988643
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.79 E-value=0.013 Score=60.19 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=28.8
Q ss_pred eec-eeeeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 168 LKD-VSGIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 168 L~~-vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
|++ +.|-+++|+++.|.||||+|||||..-++-..
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 444 34669999999999999999999988877543
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.78 E-value=0.01 Score=61.20 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.0082 Score=59.60 Aligned_cols=25 Identities=44% Similarity=0.504 Sum_probs=22.7
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.|-++.|+|++||||||+-+.|+-+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999854
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.72 E-value=0.014 Score=56.72 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+.++|++||||||+-+.|+-++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 44669999999999999998764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.71 E-value=0.013 Score=57.71 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++.||||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999975
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.69 E-value=0.011 Score=59.02 Aligned_cols=21 Identities=48% Similarity=0.615 Sum_probs=18.7
Q ss_pred EEEEccCCCcHHHHHhhhcCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+.|+||||||||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998753
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.66 E-value=0.0081 Score=59.04 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.++|+|++++|||||+++|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998864
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=93.60 E-value=0.0096 Score=63.07 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=29.3
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG 200 (1206)
+-|+++.+=++||+++.|.|+||+|||||+.-|+-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34566655689999999999999999999988874
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.59 E-value=0.012 Score=64.03 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.-.++|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999987654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.53 E-value=0.013 Score=55.92 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.+.|+||+||||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998643
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.016 Score=58.66 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++|.|||||||||+-+.|+-++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999998874
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.42 E-value=0.012 Score=59.05 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.++|+|++|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.41 E-value=0.016 Score=58.32 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 000971 180 MTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
-++|+|++|||||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999875
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.38 E-value=0.016 Score=56.42 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|+|.+|||||||++.|.|.-
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999999853
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.37 E-value=0.013 Score=55.82 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++|+|++|+|||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.019 Score=61.66 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=33.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1206)
+++|.|++|||||||-+.|.-.+... .....+..+++++.|.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh-----------------cCCCceEEEeeeeeECCc
Confidence 78999999999999999998776421 011357788998888763
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.02 Score=59.09 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=26.0
Q ss_pred eeeEeCCeEEEEEcCCCCcHHHHHHHHHc
Q 000971 172 SGIIKPGRMTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 172 s~~i~~G~~~~ilGp~GsGKSTLL~~LaG 200 (1206)
.|=+++|+++.|.||||||||||...++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred cCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999999887764
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.31 E-value=0.016 Score=56.64 Aligned_cols=23 Identities=26% Similarity=0.396 Sum_probs=20.7
Q ss_pred eEEEEEccCCCcHHHHHhhhcCC
Q 000971 868 VLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+++|.|++||||||+.+.|+-+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999853
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.27 E-value=0.019 Score=58.42 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.++|-|||||||||.-+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999998864
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.22 E-value=0.017 Score=60.55 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
-++|+|.+|+|||||+|+|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999974
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.21 E-value=0.0065 Score=58.47 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|+|++|+|||||+++|.|.-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999863
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.018 Score=57.69 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=25.3
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
+-+.+|+++.|.||+|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999999999999877764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.10 E-value=0.018 Score=59.77 Aligned_cols=25 Identities=44% Similarity=0.663 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
..+++.||||+||||+.++|+..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998765
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.021 Score=57.82 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++|-||+|||||||-+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999987764
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.05 E-value=0.016 Score=55.22 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+.|+|++|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.018 Score=58.33 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
++||-|++|||||||-+.|+-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=0.092 Score=54.90 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=25.0
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
+=+++|.++-|.||+|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 7899999999999999999999766654
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.89 E-value=0.019 Score=60.34 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.81 E-value=0.022 Score=56.68 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHhhhcC
Q 000971 868 VLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++.|+||.||||||+-+.|+-
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999984
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.76 E-value=0.02 Score=61.77 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.-++++||||+|||.|.|+||..+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 3456789999999999999998764
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.69 E-value=0.019 Score=55.06 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++|+|.+|+|||||++.+.+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.66 E-value=0.02 Score=55.32 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEccCCCcHHHHHhhhcCCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
+.|+|++||||||+-+.|+...
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998643
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.64 E-value=0.025 Score=58.02 Aligned_cols=23 Identities=57% Similarity=0.720 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++|.||||+||||+.++|+..+.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 68999999999999999998653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.63 E-value=0.024 Score=58.32 Aligned_cols=24 Identities=50% Similarity=0.765 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
+++.||||+||||+.++|+..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 689999999999999999988764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.50 E-value=0.025 Score=58.29 Aligned_cols=23 Identities=52% Similarity=0.780 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++.||||+|||||.++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999998764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.38 E-value=0.027 Score=54.31 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999988764
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.34 E-value=0.028 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++|+|+.|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999884
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.34 E-value=0.028 Score=60.94 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.-.++|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.27 E-value=0.024 Score=59.73 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=24.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++..-++|.||||+|||+|.++|++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 33445588999999999999999999874
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.20 E-value=0.025 Score=55.63 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHhhhcCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+||+|...||||||+|.|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.17 E-value=0.032 Score=58.05 Aligned_cols=25 Identities=44% Similarity=0.598 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.-+++.||||+|||+|.++||..+.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc
Confidence 3578999999999999999998754
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.09 E-value=0.035 Score=58.04 Aligned_cols=27 Identities=41% Similarity=0.664 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+..-+++.||||+|||+|.++||..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 345578999999999999999998764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.08 E-value=0.0099 Score=57.11 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++|+|.+|+|||||+|.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.034 Score=56.30 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=24.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.05 E-value=0.039 Score=55.85 Aligned_cols=27 Identities=41% Similarity=0.514 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+.|-++.+.|.||||||||.+.|+-.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999998654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.02 E-value=0.029 Score=54.68 Aligned_cols=21 Identities=57% Similarity=0.703 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++.|.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999765
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=92.02 E-value=0.028 Score=60.94 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=27.3
Q ss_pred ceeeeeCCeEEEEEccCCCcHHHHHhhhcCCCC
Q 000971 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT 892 (1206)
Q Consensus 860 vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~~ 892 (1206)
+...++.|.-+.|.|++||||||||++|++...
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 344566777799999999999999999998554
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.00 E-value=0.029 Score=58.36 Aligned_cols=23 Identities=52% Similarity=0.820 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++.||||+|||+|.++|+..+.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 68999999999999999998764
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.97 E-value=0.029 Score=55.82 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
-.++.|+||.||||||+-+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998643
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.92 E-value=0.034 Score=56.99 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 000971 180 MTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
+++|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4899999999999999999875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.91 E-value=0.035 Score=57.81 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.++.++|.||+|+|||||++.++-...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 467899999999999999998876543
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.89 E-value=0.035 Score=55.03 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 000971 180 MTLLLGPPASGKTTLLLALA 199 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~La 199 (1206)
+++|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999986
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.81 E-value=0.03 Score=54.51 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.7
Q ss_pred EEEEccCCCcHHHHHhhhcCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+.|+|++||||||+-+.|+-+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999853
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.80 E-value=0.033 Score=55.37 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.73 E-value=0.036 Score=53.75 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988754
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.67 E-value=0.037 Score=53.79 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 689999999999999998764
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.61 E-value=0.037 Score=54.72 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=22.3
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
++|-.+.|+||.||||||+-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3677888999999999999999994
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.60 E-value=0.042 Score=55.37 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.|.+++|-|+.||||||+.+.|+-.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999997764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.60 E-value=0.037 Score=61.91 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.55 E-value=0.032 Score=55.26 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.+.|+||.||||||+.+.|+-
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.54 E-value=0.041 Score=53.86 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.9
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhc
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~ 888 (1206)
++-+++.++|++||||||+.+-|+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345799999999999999998886
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.50 E-value=0.036 Score=54.22 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
++.|.|++||||||+.+.|+.+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999999999864
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.48 E-value=0.037 Score=57.99 Aligned_cols=23 Identities=43% Similarity=0.704 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++.||||+|||+|.++++....
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEecCCCCCchHHHHHHHHHhC
Confidence 78899999999999999999764
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.45 E-value=0.034 Score=53.74 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHhhhcCCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
+.|+|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998643
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.032 Score=57.22 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.+++++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999999875
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.41 E-value=0.034 Score=55.34 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=23.4
Q ss_pred eeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 864 FRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 864 i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
++.+.++.|+||.||||||+-+.|+-.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356678999999999999999999853
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.41 E-value=0.045 Score=56.81 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
...++|.||||+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999988754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.40 E-value=0.048 Score=55.00 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.+.+++++||+|+||||.+-=||-.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999888886653
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.33 E-value=0.042 Score=53.59 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.33 E-value=0.04 Score=53.20 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998875
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.28 E-value=0.043 Score=52.84 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 000971 181 TLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1206)
++|+|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998774
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.21 E-value=0.047 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.9
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998643
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.18 E-value=0.032 Score=56.00 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
-++|+|+.|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.16 E-value=0.047 Score=61.73 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQH 234 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~ 234 (1206)
=++++||+|||||-|.+.||+.++-. -+..++..++ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP-----Fv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP-----FIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC-----EEEEEGGGGC----------CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC-----EEEeecceee------ecceeecc
Confidence 46889999999999999999988632 3444543333 47999986
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.09 E-value=0.099 Score=51.05 Aligned_cols=35 Identities=29% Similarity=0.262 Sum_probs=27.7
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
..|+.....+ .|.=+++.||||+|||||...|.-+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3456555555 8899999999999999999888743
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.07 E-value=0.043 Score=53.24 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEEccCCCcHHHHHhhhcCCC
Q 000971 868 VLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
=.++|+|..|||||||++.|.+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999999854
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.04 E-value=0.042 Score=54.92 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.2
Q ss_pred eEEEEEccCCCcHHHHHhhhcC
Q 000971 868 VLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g 889 (1206)
.+++++|.+|||||||.+.|+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999985
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.01 E-value=0.058 Score=56.50 Aligned_cols=30 Identities=40% Similarity=0.599 Sum_probs=26.9
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
|=+++|++|.|.||||||||||+..++-..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 789999999999999999999988777654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.00 E-value=0.047 Score=55.75 Aligned_cols=22 Identities=50% Similarity=0.902 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+++-||||+|||||.++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6789999999999999999865
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.99 E-value=0.04 Score=61.55 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
-+||+|.+|+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999953
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.043 Score=54.36 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
++.|+||.||||||.-+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999985
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.91 E-value=0.049 Score=52.99 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 689999999999999987754
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.86 E-value=0.045 Score=55.42 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
++||.||+||||||+-+.|+-.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999953
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.84 E-value=0.05 Score=54.85 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=20.3
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
.+.+++++||+|+||||.+-=||.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999766664
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.84 E-value=0.24 Score=51.75 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=25.4
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
+-++.|.++-|-||+|+|||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHH
Confidence 6789999999999999999999877765
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.83 E-value=0.054 Score=53.25 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999864
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.77 E-value=0.047 Score=54.03 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHhhhc
Q 000971 869 LTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~ 888 (1206)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999985
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.72 E-value=0.052 Score=54.81 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.9
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
+.|-++-|.|.||||||||-+.|+-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999999974
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.70 E-value=0.06 Score=52.31 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999887653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.65 E-value=0.03 Score=60.91 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
-++|.||||+|||||++.|++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4699999999999999999999875
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.60 E-value=0.071 Score=51.08 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=25.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 175 IKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 175 i~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.+||.++++-|+=|||||||.+.++.-+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 45899999999999999999999987654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.56 E-value=0.052 Score=52.29 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.46 E-value=0.06 Score=54.47 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=20.7
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
++-.+++++||+|+||||.+-=||-
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999776764
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.38 E-value=0.053 Score=52.90 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=18.9
Q ss_pred EEEEccCCCcHHHHHhhhcCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+.|+||.||||||+-+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999853
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.35 E-value=0.07 Score=53.06 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++|+|...+|||||+++|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 69999999999999999998653
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.34 E-value=0.056 Score=52.39 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.29 E-value=0.057 Score=54.54 Aligned_cols=26 Identities=42% Similarity=0.492 Sum_probs=23.1
Q ss_pred eCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 865 RPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 865 ~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+.|-+++|-|+-||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999998763
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.28 E-value=0.061 Score=51.81 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999999875
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.25 E-value=0.074 Score=53.54 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
..+++++||+|+||||.+--||-.+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999988887653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=0.058 Score=52.24 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=90.22 E-value=0.059 Score=52.27 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.++++|+.|+|||||++.|.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998743
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.066 Score=51.71 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.19 E-value=0.049 Score=52.38 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 468999999999999998875
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.15 E-value=0.059 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 000971 180 MTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
-++|+|++|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.15 E-value=0.08 Score=51.11 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++|+|++|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCcCHHHHHHHHhCCcc
Confidence 68999999999999999988643
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.14 E-value=0.095 Score=55.83 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|-|.+|||||+++|++-
T Consensus 13 iGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 13 TGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEECSSSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 899999999999999999975
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.05 E-value=0.065 Score=54.45 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++-||||+||||+.++|+..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 57899999999999999987653
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.03 E-value=0.065 Score=52.58 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.98 E-value=0.065 Score=52.23 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.96 E-value=0.065 Score=54.42 Aligned_cols=23 Identities=43% Similarity=0.791 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++.||+|+||||+.++|+..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 67899999999999999998653
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=0.067 Score=51.50 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.056 Score=58.49 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.7
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
..-.+||.||.|||||||++.|+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 466899999999999999999975
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.86 E-value=0.047 Score=57.05 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++.|.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999998763
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=89.76 E-value=0.064 Score=52.56 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+.|+||.||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999953
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.74 E-value=0.056 Score=52.28 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++++|.+|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 389999999999999998875
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.74 E-value=0.071 Score=54.46 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.6
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
+.+++|-|+-||||||+++.|+...
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999754
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.70 E-value=0.047 Score=53.48 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++++|++|+|||||++.|.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999988543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.69 E-value=0.075 Score=53.57 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.8
Q ss_pred CeEEEEEccCCCcHHHHHhhhcC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
-.+++++||+|+||||.+-=||-
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999877774
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.66 E-value=0.056 Score=56.27 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.1
Q ss_pred CeEEEEEccCCCcHHHHHhhhcCCCC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSGRKT 892 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g~~~ 892 (1206)
...+.|.||+|+|||||.+.|++...
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34688999999999999999998543
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.64 E-value=0.041 Score=58.21 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=16.5
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 899999999999999998864
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.62 E-value=0.13 Score=50.09 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=26.8
Q ss_pred EeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 167 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
.|+. +...-.|.=+++.|+||+|||||...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4553 444567889999999999999999888754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=0.07 Score=51.78 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.54 E-value=0.069 Score=52.97 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987754
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.54 E-value=0.13 Score=50.29 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=27.1
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.|+.....+ .|.-+.|.|+||+|||||.-.|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 456555555 8889999999999999998777643
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.53 E-value=0.076 Score=50.88 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988743
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.48 E-value=0.072 Score=51.06 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998864
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=89.45 E-value=0.085 Score=53.30 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+-.+++++||+|+||||.+-=||-++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34588999999999999988787654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.37 E-value=0.055 Score=52.55 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|+|++|+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5689999999999999997643
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.35 E-value=0.097 Score=52.92 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
.|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5899999999999999999999988764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.32 E-value=0.075 Score=54.14 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=24.2
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhc
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~ 888 (1206)
|=+++|+++-|.||+|+|||||..-++
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 569999999999999999999986655
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.28 E-value=0.062 Score=51.74 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|.+|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998876
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.27 E-value=0.064 Score=52.02 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 378999999999999999875
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.24 E-value=0.15 Score=49.84 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++|+|+.|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3789999999999999998863
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.23 E-value=0.072 Score=51.97 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.+.|+||.||||||.-+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999984
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=89.22 E-value=0.069 Score=57.14 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
++||.|++||||||+-+.|..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHH
Confidence 899999999999999888865
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.22 E-value=0.1 Score=50.50 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
++|+|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCcC
Confidence 68999999999999999987643
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.22 E-value=0.086 Score=52.87 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 000971 180 MTLLLGPPASGKTTLLLALA 199 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~La 199 (1206)
+++|.|++||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=89.20 E-value=0.085 Score=53.08 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=19.9
Q ss_pred CeEEEEEccCCCcHHHHHhhhcC
Q 000971 867 GVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 867 G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
..++.++||+|+||||.+-=||.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999877775
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.16 E-value=0.071 Score=54.93 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+++.||+|+||||+.++++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999999999998764
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=89.15 E-value=0.06 Score=59.17 Aligned_cols=28 Identities=43% Similarity=0.399 Sum_probs=25.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+.+..+++.||||+|||||.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5667899999999999999999999874
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.14 E-value=0.083 Score=53.78 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=24.8
Q ss_pred eeeeeCCeEEEEEccCCCcHHHHHhhhc
Q 000971 861 SGAFRPGVLTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 861 s~~i~~G~~~al~G~sGaGKSTLl~~L~ 888 (1206)
.+-+++|+++-|.|++|+|||||..-++
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 4569999999999999999999976665
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.12 E-value=0.057 Score=52.46 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=8.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.|.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.99 E-value=0.096 Score=52.65 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 000971 180 MTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG 200 (1206)
+++|.|++||||||..+.|.-
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.95 E-value=0.078 Score=51.83 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.6
Q ss_pred eEEEEEccCCCcHHHHHhhhcC
Q 000971 868 VLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g 889 (1206)
-.++|+|++|+|||||++-+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999875
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.92 E-value=0.078 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
+++|.||.||||||+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999643
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=88.85 E-value=0.097 Score=52.76 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=18.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.-.+++++||+|+||||.+-=||-.+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999888886543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=88.79 E-value=0.082 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=16.0
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
...+++++||+|+||||.+-=||-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999776764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.76 E-value=0.085 Score=50.62 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=18.6
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997774
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.74 E-value=0.099 Score=50.06 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=24.4
Q ss_pred eeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 863 AFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 863 ~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
..+||.+++|-|+=|||||||.+.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence 347999999999999999999999884
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.72 E-value=0.072 Score=54.45 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
++||||...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999873
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.72 E-value=0.094 Score=50.44 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987753
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=88.68 E-value=0.1 Score=52.49 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.+++++||+|+||||.+-=||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999988886654
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.68 E-value=5.7 Score=40.77 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 178 GRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
..+++|.|..|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999998754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.56 E-value=0.077 Score=51.60 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.53 E-value=0.098 Score=50.30 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999998753
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.53 E-value=0.088 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+.|+||.||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999853
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.50 E-value=0.17 Score=49.07 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=27.8
Q ss_pred eEeeceeeeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 166 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
+-|+. ++..-.|.=++|.|+||+|||||...|.-+
T Consensus 4 t~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 4 TSLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 34555 555668999999999999999999887654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.49 E-value=0.092 Score=51.06 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 000971 180 MTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
-++|+|++|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999998764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.41 E-value=0.1 Score=50.34 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998864
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.39 E-value=0.062 Score=56.77 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEecCCCCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHI 238 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~ 238 (1206)
+++|.|+|||||||+.++|...+... | -.++.+++++.|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~----~---------------v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE----G---------------VKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH----T---------------CCEEEEEGGGGBS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhc----C---------------CCeEEEeCCCCCc
Confidence 79999999999999999998765421 1 1357888888663
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.28 E-value=0.098 Score=50.44 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998776
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.23 E-value=0.081 Score=50.89 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999865
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.21 E-value=0.1 Score=50.65 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987753
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.21 E-value=0.1 Score=50.22 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999987654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.19 E-value=0.082 Score=50.80 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++++|.+|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.16 E-value=0.11 Score=50.23 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 000971 181 TLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1206)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999997654
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.11 E-value=0.12 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
+++|-|+.||||||+++.|+..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578889999999999999998764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.09 E-value=0.07 Score=51.70 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.07 E-value=0.099 Score=53.61 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.9
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhh
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVL 887 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L 887 (1206)
|=+++|+++-|.||+|+|||||.--+
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHH
Confidence 56899999999999999999996544
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.02 E-value=0.1 Score=50.25 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.++|+|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.99 E-value=0.11 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 000971 180 MTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.93 E-value=0.1 Score=52.22 Aligned_cols=20 Identities=35% Similarity=0.672 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHhhhc
Q 000971 869 LTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~ 888 (1206)
++||.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999886
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=87.92 E-value=0.13 Score=57.39 Aligned_cols=29 Identities=41% Similarity=0.612 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
.|+-+++|.||.||||||+|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 46679999999999999999999987654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.81 E-value=0.12 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
+++|-|++|||||||-+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998876544
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.72 E-value=0.1 Score=56.33 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=21.6
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
..-.+||.||.|||||||++.|..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.63 E-value=0.12 Score=49.84 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998854
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.62 E-value=0.11 Score=52.02 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.4
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.|.+++|-|+-||||||+.+.|+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999853
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.60 E-value=0.11 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=18.6
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++++|++|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988763
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.56 E-value=0.11 Score=55.70 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 000971 181 TLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
++|+|-|.+|||||+++|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999853
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=87.56 E-value=0.12 Score=49.79 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 000971 180 MTLLLGPPASGKTTLLLALAG 200 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG 200 (1206)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.55 E-value=0.11 Score=53.73 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=21.2
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
.+..+.|.||.|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 467899999999999999998874
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.42 E-value=0.2 Score=52.67 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCeeCCCCCccceEEEec
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYIS 232 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~ 232 (1206)
-++|+|-|.+|||||+++|++--. .....+.....|+--+..|+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~---------~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGI---------EAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC---------------CCCCCCCCSSEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCC---------ccccCCCCCCCCceEEEecc
Confidence 479999999999999999997532 23345555555555555555
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.39 E-value=0.13 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.++|+|.-+||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.33 E-value=0.15 Score=50.98 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
-++|+|...+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999998754
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.30 E-value=0.13 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++++|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999988763
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.28 E-value=0.1 Score=50.53 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++++|++|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 478999999999999998775
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.24 E-value=0.12 Score=50.50 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+.|+||.||||||+.+.|+-+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999853
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.20 E-value=0.12 Score=52.12 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.4
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.|.+++|=|+-||||||+.+.|+-+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 68899999999999999999998643
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=87.20 E-value=0.12 Score=51.13 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+.|+||.||||||+-+.|+-.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999953
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.19 E-value=0.12 Score=49.94 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999875
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.13 E-value=3.3 Score=42.70 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.8
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
+..+++|.|.-|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988763
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.09 E-value=0.11 Score=49.98 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++|+|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988763
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.05 E-value=0.11 Score=50.92 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++++|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.05 E-value=0.1 Score=50.32 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.87 E-value=0.14 Score=52.35 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=24.2
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhc
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~ 888 (1206)
+-+.+|+++.|.|++|+|||||.--++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999999976665
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.85 E-value=0.14 Score=51.39 Aligned_cols=21 Identities=38% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|+++||||||+.+|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999999643
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.77 E-value=0.14 Score=49.47 Aligned_cols=20 Identities=35% Similarity=0.601 Sum_probs=18.1
Q ss_pred EEEEccCCCcHHHHHhhhcC
Q 000971 870 TALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g 889 (1206)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.77 E-value=0.14 Score=49.63 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+.|+|..|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998874
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=86.71 E-value=0.13 Score=49.72 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+.|+|++|+|||||++.+.+.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999863
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.70 E-value=0.12 Score=52.56 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHhhhcCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+-|.||+|+|||||.++|+..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999863
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.70 E-value=0.13 Score=49.05 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998874
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.70 E-value=0.15 Score=53.56 Aligned_cols=33 Identities=33% Similarity=0.680 Sum_probs=26.2
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCCC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
+|+.++.-| -+++|+||-++|||||||.|+|..
T Consensus 24 ~l~~~~~~v---~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCCSBE---EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHcCCCCE---EEEEEECCCCCCHHHHHHHHcCCC
Confidence 455554333 589999999999999999999854
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.64 E-value=0.12 Score=49.66 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999988875
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.59 E-value=0.21 Score=53.45 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 176 ~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
.|.-.+++.||||+|||.|.++|++.+.
T Consensus 121 ~~~g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 121 YASGMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred cCCceEEEECCCCccHHHHHHHHHHHhc
Confidence 3444677789999999999999999853
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=86.58 E-value=0.17 Score=49.21 Aligned_cols=34 Identities=26% Similarity=0.222 Sum_probs=25.4
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.|++.-. .-.|.=+.|+|+||+|||||.-.|..+
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3444333 446788999999999999998777644
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.49 E-value=0.23 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 000971 180 MTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
-++|+|++|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999977764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.34 E-value=0.14 Score=51.27 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHhhhc
Q 000971 869 LTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~ 888 (1206)
++||.|..||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 78999999999999999986
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.31 E-value=0.14 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.+-|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999643
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.27 E-value=0.12 Score=49.32 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.26 E-value=0.25 Score=47.98 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999997765
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.13 E-value=0.17 Score=52.85 Aligned_cols=29 Identities=38% Similarity=0.592 Sum_probs=25.1
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
+=++.|+++.|.||+|||||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 67899999999999999999997666543
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.05 E-value=0.19 Score=53.96 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 177 ~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
|...++++||+|+|||.|.++||-.+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc
Confidence 444678999999999999999998754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.03 E-value=0.13 Score=49.93 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.91 E-value=0.16 Score=48.69 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.91 E-value=0.12 Score=50.03 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=9.1
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|..|+|||||++.|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.87 E-value=0.13 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=20.8
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
|+.-+.++||+|+|||+|.++||..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhc
Confidence 3345568999999999999999964
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.86 E-value=0.17 Score=48.51 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.83 E-value=0.13 Score=50.83 Aligned_cols=20 Identities=40% Similarity=0.554 Sum_probs=18.5
Q ss_pred EEEEccCCCcHHHHHhhhcC
Q 000971 870 TALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g 889 (1206)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998775
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.62 E-value=0.17 Score=49.68 Aligned_cols=19 Identities=47% Similarity=0.677 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 000971 181 TLLLGPPASGKTTLLLALA 199 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~La 199 (1206)
++|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6799999999999999883
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.58 E-value=0.17 Score=53.55 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 000971 180 MTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.++|+|.-+||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999963
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.57 E-value=0.17 Score=49.54 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 789999999999999987653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.51 E-value=0.17 Score=53.19 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
-+++|+||-++||||||+.|.|...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4889999999999999999999753
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.48 E-value=0.16 Score=49.19 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.+.|+|.+|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998875
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.32 E-value=0.22 Score=52.02 Aligned_cols=31 Identities=45% Similarity=0.696 Sum_probs=27.8
Q ss_pred eeEeCCeEEEEEcCCCCcHHHHHHHHHcCCC
Q 000971 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1206)
Q Consensus 173 ~~i~~G~~~~ilGp~GsGKSTLL~~LaG~l~ 203 (1206)
|=++.|++|-|-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 7889999999999999999999988887643
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.28 E-value=0.17 Score=51.39 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 000971 180 MTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999999875
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.14 E-value=0.18 Score=49.60 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++|+|++|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.12 E-value=0.15 Score=49.25 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=18.4
Q ss_pred EEEEccCCCcHHHHHhhhcC
Q 000971 870 TALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g 889 (1206)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.12 E-value=0.15 Score=48.81 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=84.88 E-value=0.23 Score=48.00 Aligned_cols=34 Identities=32% Similarity=0.219 Sum_probs=26.0
Q ss_pred EeecceeeeeCCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 856 vL~~vs~~i~~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
-|+. ++-.-.|.=+.|.|+||+|||||.-.|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4555 444557889999999999999998666643
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.85 E-value=0.18 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.++|+|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.72 E-value=0.18 Score=48.64 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998765
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.69 E-value=0.19 Score=49.96 Aligned_cols=22 Identities=59% Similarity=0.863 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+++|-|.-||||||+++.|..+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.57 E-value=0.17 Score=48.63 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=18.7
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997764
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.48 E-value=0.2 Score=52.82 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=18.3
Q ss_pred EEEEEccCCCcHHHHHhhhc
Q 000971 869 LTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~ 888 (1206)
++||-|+.|||||||-+.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHH
Confidence 88999999999999988775
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=84.43 E-value=0.18 Score=51.38 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=19.0
Q ss_pred EEEEccCCCcHHHHHhhhcCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+-+.||+|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999999863
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.33 E-value=0.21 Score=50.45 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH-cCCCCC
Q 000971 180 MTLLLGPPASGKTTLLLALA-GKLDSS 205 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~La-G~l~~~ 205 (1206)
-++|||.+|+|||||++-+. +...|+
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pT 34 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLT 34 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCC
Confidence 46899999999999999874 333344
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.32 E-value=0.18 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.0
Q ss_pred EEEEccCCCcHHHHHhhhcCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+-|.||+|+|||||.++|+..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999863
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.25 E-value=0.23 Score=52.19 Aligned_cols=29 Identities=38% Similarity=0.628 Sum_probs=25.4
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 000971 174 IIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1206)
Q Consensus 174 ~i~~G~~~~ilGp~GsGKSTLL~~LaG~l 202 (1206)
.|-.|+-.+|+|++|+|||||+..|+...
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999998643
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.97 E-value=0.23 Score=48.31 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 000971 181 TLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
++++|.+|+|||||++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999866553
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.89 E-value=0.22 Score=47.84 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.+.|+|++|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998875
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.88 E-value=0.19 Score=48.32 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=18.5
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.71 E-value=0.19 Score=48.31 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.+.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=83.69 E-value=0.22 Score=47.77 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.+.|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999998764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.69 E-value=0.22 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.+.++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998874
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.66 E-value=0.23 Score=52.16 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=25.4
Q ss_pred eeeeCCeEEEEEccCCCcHHHHHhhhcC
Q 000971 862 GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 862 ~~i~~G~~~al~G~sGaGKSTLl~~L~g 889 (1206)
+.+-.|+..+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4677999999999999999999998885
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.64 E-value=0.21 Score=49.29 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.7
Q ss_pred EEEEccCCCcHHHHHhhhcCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+||+|.-.||||||++.|+|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeccCCcHHHHHHHHHhh
Confidence 799999999999999999984
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.29 E-value=0.24 Score=48.58 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.1
Q ss_pred EEEEEccCCCcHHHHHhhhc
Q 000971 869 LTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~ 888 (1206)
.+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999883
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.23 E-value=0.23 Score=48.52 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|.+|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999998765
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.98 E-value=0.19 Score=51.16 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=18.8
Q ss_pred EEEEccCCCcHHHHHhhhcCC
Q 000971 870 TALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 870 ~al~G~sGaGKSTLl~~L~g~ 890 (1206)
+-+.||.|.|||||.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999964
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=82.82 E-value=0.28 Score=49.38 Aligned_cols=49 Identities=6% Similarity=0.070 Sum_probs=33.1
Q ss_pred hcCCccceeecCCCCC-CHHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH
Q 000971 339 VGPALALFMDEISTGL-DSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388 (1206)
Q Consensus 339 ~~~~~vlllDEptsgL-Ds~t~~~i~~~L~~~~~~~~~t~vi~i~q~~~~~ 388 (1206)
+...+++++|+.=.=. +......+...+.... ..++.+|++...+..+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGGGC
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHh-hccceEEEecCCcchhc
Confidence 4467899999985432 4566666777776543 46778888777766554
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.27 E-value=0.27 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.++++|.-.||||||+|+|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999953
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=82.16 E-value=0.28 Score=52.13 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHhhhcCCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~~ 891 (1206)
.++++|.-.||||||+|+|+|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999954
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.10 E-value=0.29 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHhhhcCC
Q 000971 868 VLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 868 ~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
..+.|.||.|+||||+++.|+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999864
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=82.08 E-value=0.22 Score=52.42 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=13.1
Q ss_pred EEEEcCCCCcHHHHH
Q 000971 181 TLLLGPPASGKTTLL 195 (1206)
Q Consensus 181 ~~ilGp~GsGKSTLL 195 (1206)
++|.|++||||||.|
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEeeCCccHHHHH
Confidence 579999999999765
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.89 E-value=0.41 Score=50.03 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHH---HcCCCC
Q 000971 180 MTLLLGPPASGKTTLLLAL---AGKLDS 204 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L---aG~l~~ 204 (1206)
-++|+|+.|||||||..+| +|..+.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 4799999999999999998 565554
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.69 E-value=0.3 Score=49.31 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=18.1
Q ss_pred EEEEEccCCCcHHHHHhhhc
Q 000971 869 LTALMGVSGAGKTTLMDVLS 888 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~ 888 (1206)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999999875
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.68 E-value=0.3 Score=46.66 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|.+|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998875
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.60 E-value=0.36 Score=49.04 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~l~~ 204 (1206)
++++|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 47889999999999999999987654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.30 E-value=0.3 Score=47.40 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.3
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.+.|+|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999986654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=81.13 E-value=0.4 Score=48.74 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 000971 179 RMTLLLGPPASGKTTLLLALAGK 201 (1206)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~ 201 (1206)
.+++|.|+.||||||..+.|+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999754
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.10 E-value=0.28 Score=52.46 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHhhhcCC
Q 000971 869 LTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
.+||+|..-+|||||+|+|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999883
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.90 E-value=0.32 Score=47.70 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHhhhcC
Q 000971 869 LTALMGVSGAGKTTLMDVLSG 889 (1206)
Q Consensus 869 ~~al~G~sGaGKSTLl~~L~g 889 (1206)
.++|+|.+|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988765
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=80.86 E-value=0.29 Score=50.36 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=20.9
Q ss_pred CCeEEEEEccCCCcHHHHHhhhcCC
Q 000971 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1206)
Q Consensus 866 ~G~~~al~G~sGaGKSTLl~~L~g~ 890 (1206)
|-.-+-|.||+|+|||+|.+.|+..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhhc
Confidence 3345779999999999999999963
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=80.66 E-value=0.4 Score=49.93 Aligned_cols=20 Identities=50% Similarity=0.541 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 000971 180 MTLLLGPPASGKTTLLLALA 199 (1206)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~La 199 (1206)
-++|+|+.|||||||..+|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 46899999999999999994
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.33 E-value=0.32 Score=48.98 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=40.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHHhcCeEEEEecCcEEEEEcCCCcchhHHHHHH
Q 000971 998 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYF 1077 (1206)
Q Consensus 998 ~P~iL~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~p~~~i~~~~d~v~ll~~gg~~~~~g~~~~~~~~~~~yf 1077 (1206)
+.+++|+||.- ++...++..+...+... ...+.+++++++.+. +... +.++ -+++.+.++. ..++..+.
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~-~~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~--~~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELY-SNSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLS--DEDVLKRL 169 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHT-TTTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCC--HHHHHHHH
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhcccc-ccceeeeeccCchhh-hhhH-----HHHH-HHHhhhcccc--hhhhHHHH
Confidence 35799999975 45555555555555443 234567777777653 3221 1222 3566777765 24566666
Q ss_pred Hh
Q 000971 1078 EA 1079 (1206)
Q Consensus 1078 ~~ 1079 (1206)
..
T Consensus 170 ~~ 171 (224)
T d1sxjb2 170 LQ 171 (224)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=80.29 E-value=0.28 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=18.6
Q ss_pred cceEeeceeeeEeCCeEEEEEcCCCCcHHHHH
Q 000971 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLL 195 (1206)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL 195 (1206)
+..|+++.. | -++|.|++||||||.|
T Consensus 16 Q~~~v~~~~-----g-~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 16 QQEAVRTTE-----G-PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHHCCS-----S-CEEEEECTTSCHHHHH
T ss_pred HHHHHhCCC-----C-CEEEEecCCccHHHHH
Confidence 344666542 3 3779999999999866
|