Citrus Sinensis ID: 000987

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------120

MNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

cccHHHHHccccccccccccccEEEHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHEEEEEEEcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHcccHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHccc

cccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccEEEEEEEccccccccccccccccccEEEEHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEccccEEcccccccccccccccccHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccHHHHHHHHHcHHccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHEEEEEEHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccEEEEEccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHcccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHccc

MNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDaslddegllefasdknfkwptrpqdmeidgidgfidkrsehheglfrANTTMAIELIGEFLQNKVTSRILYLAHmnmpshwggFIERLRLLALKSAALrnskvitpEALLQLASDtrgdlgrksktapqkechavafpgslmslagqcngtsrsalwlpIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQrerdpsegpvpridsslcmvLSVTTLTVADIIEEEEselideteqspsnlpkdkqapgrrrKDLVTSLQLLgdfedmltpppfvRSIANQAAAKAIMFISGltvgngyyesvsmnglatsclGNMRHLIVEACIARNLldtsaylwpgyvnasdsnqvpcsiatqmsgwsslmkgspltpsltnalvvtpasslAEIEKVYEIAvngsddekICAATVLCGASlvrgwsvqeNTILFIIKllsppvpadysgseshLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICevfgssipnaswtlssgeefscyavFSNAFTILVRLWrfhkppleqltvdmplvasqlspeYLLLVRNSklasfgtspkdqmkskrfsknikfstdpifmdsfpklKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKinrsgtpltsatsgstnssgsgledvsiklkvpawdileatPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVtrglwkpafmngtdwpspatnlSSIEQQIKKILAatgvdvptvavggnspatlplPLAALVSLTITFKLDKASDRFLALVGLGLsslasscpwpcmpivASLWAQKVKRWNDFlvfsasgtvfhynTDAVVQLLKSCFtstlgltsshnysnggvgallghgfgshfsggispvgpgiLYLRVHRSVRDVMFMKEEILSILMHCVRDiascglpreKLEKLKktkhgmryGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVqeggesgcmvGMLGGYALAYFAVFCATFawgvdsesraskkrptvlgTHLEFLASALDRKisvgcdcatwRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

MNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFasdknfkwptrpqdMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRnskvitpealLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPsegpvpridsslcmVLSVTTLTVADIIEEEESelideteqspsnlpkdkqapgrrrKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLasfgtspkdqmkskrfsknikfstdpifmdsFPKLKRWYRQNEECIASTltglvhgtSVHLIVDALLTKMFRKINRsgtpltsatsgstnssgsglEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEklkktkhgmryGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSesraskkrptvLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

MNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIErlrllalksaalrNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADiieeeeselideteQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLtsatsgstnssgsgLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNspatlplplaalvsltITFKLDKASDRFlalvglglsslassCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNggvgallghgfgshfsggISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSlaaamtraklaaslGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEElaltllgvggvgamgaaaqlIVESKI

*****DVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQL*******************CHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQ************IDSSLCMVLSVTTLTVADII********************************VTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLM****LTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSK********************IKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKI************************VSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVD*********PTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIV****

**SIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLL**************************************ANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLAL**********ITPEALLQLASDTRGDLGRKSKTAPQKECH*VAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEE**************************DLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTV****************CLGNMRHLIVEACIARNLLDTSAYLWPGYVNAS******************LMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPV******S***LIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASW**SSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRN*****************************IFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMF********************************KVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIAS***************************AMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWF*******************LGGYALAYFAVFCATFAWGV*************LGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESK*

MNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTR***********QKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEE*************************KDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASF***********RFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSG******************EDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVD********RPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

*NSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFK********************SEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEES*******************PGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLAS******************KFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINR***********************SIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLK*TKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHG******ESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1198	2.2.26 [Sep-21-2011]
F4IN69		1275	Mediator of RNA polymeras	yes	no	0.932	0.876	0.608	0.0
Q9LUG9		1309	Mediator of RNA polymeras	no	no	0.979	0.896	0.582	0.0

>sp\|F4IN69\|MD33B_ARATH Mediator of RNA polymerase II transcription subunit 33B OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1	Back alignment and function desciption

 Score = 1407 bits (3643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 742/1219 (60%), Positives = 894/1219 (73%), Gaps = 102/1219 (8%)

Query: 1    MNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTR 60
            MNSIDD+L+LS+ FG++  E G +L+ FVFS+VW+LLDASLD+EGLLE  S+K  KWP+ 
Sbjct: 132  MNSIDDILHLSETFGVQDQEPGSILLAFVFSIVWELLDASLDEEGLLELTSNKRSKWPSS 191

Query: 61   PQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWG 120
            P DM++DG++  + KR+E+H+ L +ANT MAIELI EFLQNKVTSRIL+LA  NM     
Sbjct: 192  PHDMDLDGLENSV-KRNENHDALEKANTEMAIELIQEFLQNKVTSRILHLASQNM----- 245

Query: 121  GFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLM 180
                                                    +SKT P+ E HA+   GS +
Sbjct: 246  ----------------------------------------ESKTIPRGEFHAIVSSGSKL 265

Query: 181  SLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFL 240
            +L      TS SALWLPIDLF ED MDGTQ AA SAVE LTGLVKALQ  N T+WHD FL
Sbjct: 266  AL------TSDSALWLPIDLFFEDIMDGTQAAAASAVENLTGLVKALQAANSTSWHDAFL 319

Query: 241  G-------------------LWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVAD 281
                                 ++  L +L  ERDP EGPVPR D+ LC++LSVT L VA+
Sbjct: 320  ALWLAALRLVQRENLCLRYCFFMHMLEILSEERDPIEGPVPRTDTFLCVLLSVTPLAVAN 379

Query: 282  IIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQ 341
            IIEEEES+ ID+T  SPSN  K+K+  G+ R+ L+ SLQ LGD+E +LTPP  V+S+ANQ
Sbjct: 380  IIEEEESQWIDQTSSSPSNQWKEKK--GKCRQGLINSLQQLGDYESLLTPPRSVQSVANQ 437

Query: 342  AAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIAR-NLLDTSAYLWPGY 400
            AAAKAIMFISG+T  NG YE+ SM+  A+ C           C  R +L     ++  G 
Sbjct: 438  AAAKAIMFISGITNSNGSYENTSMSESASGC-----------CKVRFSLFTLKMFVVMGV 486

Query: 401  VNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSD 460
                    + C+I    S WS +MKGSPLTPSLTN+L+ TPASSLAEIEK+YE+A  GS+
Sbjct: 487  Y-------LLCNI----SCWSLVMKGSPLTPSLTNSLITTPASSLAEIEKMYEVATTGSE 535

Query: 461  DEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLV 520
            DEKI  A++LCGASL RGWS+QE+ I+FI+ LLSPP PAD SGS SHLI  A  LN LLV
Sbjct: 536  DEKIAVASILCGASLFRGWSIQEHVIIFIVTLLSPPAPADLSGSYSHLINSAPFLNVLLV 595

Query: 521  GISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTI 580
            GIS +DC+ IFSLHG VPLLA ALMPICE FGS +PN +WTL +GE  S +AVFS AFT+
Sbjct: 596  GISPIDCVHIFSLHGVVPLLAGALMPICEAFGSGVPNITWTLPTGELISSHAVFSTAFTL 655

Query: 581  LVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIK 640
            L+RLWRF  PPL+ +  D+P V  Q SPEYLLLVRN +L  FG SPKD+M  +RFSK I 
Sbjct: 656  LLRLWRFDHPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLECFGKSPKDRMARRRFSKVID 715

Query: 641  FSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPL 700
             S DPIFMDSFP+LK+WYRQ++EC+AS L+ L  G+ VH IVD+LL+ MF+K N+ G+  
Sbjct: 716  ISVDPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKANKGGSQS 775

Query: 701  TSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKE 760
             + +SGS++ S SG +D S +LK+PAWDILEA PFVLDAAL ACAHG LSPRELATGLK 
Sbjct: 776  LTPSSGSSSLSTSGGDDSSDQLKLPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKI 835

Query: 761  LSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDV 820
            L+D LPATL T+VSYFS+EVTRGLWKP  MNGTDWPSPA NL+S+EQQI+KILAATGVDV
Sbjct: 836  LADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLASVEQQIEKILAATGVDV 895

Query: 821  PTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVA 880
            P +   G S ATLPLPLAALVSLTIT+KLDKA++RFL LVG  L SLA++CPWPCMPIV 
Sbjct: 896  PRLPADGISAATLPLPLAALVSLTITYKLDKATERFLVLVGPALDSLAAACPWPCMPIVT 955

Query: 881  SLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLT-SSHNYSNGGVGALL 939
            SLW QKVKRW+DFL+FSAS TVFH+N DAV+QLL+SCFT TLGLT +S   S GGVGALL
Sbjct: 956  SLWTQKVKRWSDFLIFSASRTVFHHNRDAVIQLLRSCFTCTLGLTPTSQLCSYGGVGALL 1015

Query: 940  GHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLE 999
            GHGFGS +SGGIS   PGILY++VHRS+RDVMF+ EEILS+LM  V+ IA+  LP  + E
Sbjct: 1016 GHGFGSRYSGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIATRELPAGQAE 1075

Query: 1000 KLKKTKHGMRY--GQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISV 1057
            KLKKTK G RY  GQVSL+ AM R KLAASLGASLVWISGG +LV +L+ ETLPSWFISV
Sbjct: 1076 KLKKTKDGSRYGIGQVSLSLAMRRVKLAASLGASLVWISGGLNLVQALIKETLPSWFISV 1135

Query: 1058 HGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASA 1117
            HG   E  E G MV ML GYALAYFA+  + FAWGVDS   ASK+RP VL  HLEF+ SA
Sbjct: 1136 HG---EEDELGGMVPMLRGYALAYFAILSSAFAWGVDSSYPASKRRPRVLWLHLEFMVSA 1192

Query: 1118 LDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTL 1177
            L+ KIS+GCD ATW+AYV+GFV+L+V CTP W+LE++V+ +KRLSK LRQW+E++LAL L
Sbjct: 1193 LEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLEVDVEVIKRLSKSLRQWNEQDLALAL 1252

Query: 1178 LGVGGVGAMGAAAQLIVES 1196
            L  GG+G MGAA +LIVE+
Sbjct: 1253 LCAGGLGTMGAATELIVET 1271

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9LUG9\|MD33A_ARATH Mediator of RNA polymerase II transcription subunit 33A OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1198
296086711		1388	unnamed protein product [Vitis vinifera]	0.996	0.860	0.724	0.0
359479864		1321	PREDICTED: uncharacterized protein LOC10	0.983	0.891	0.716	0.0
224128668		1315	predicted protein [Populus trichocarpa]	0.991	0.903	0.722	0.0
224068803		1295	predicted protein [Populus trichocarpa]	0.954	0.883	0.713	0.0
255551487		1325	conserved hypothetical protein [Ricinus	0.997	0.901	0.662	0.0
225432512		1305	PREDICTED: uncharacterized protein LOC10	0.979	0.899	0.673	0.0
449444909		1335	PREDICTED: mediator of RNA polymerase II	0.994	0.892	0.695	0.0
224100311		1304	predicted protein [Populus trichocarpa]	0.978	0.898	0.644	0.0
356557874		1310	PREDICTED: uncharacterized protein LOC10	0.995	0.910	0.639	0.0
356549015		1305	PREDICTED: uncharacterized protein LOC10	0.982	0.901	0.640	0.0

>gi\|296086711\|emb\|CBI32346.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1760 bits (4559), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 867/1196 (72%), Positives = 1003/1196 (83%), Gaps = 2/1196 (0%)

Query: 1    MNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTR 60
            M SIDDVL+LSQIFGL+VCE G L+VEF+FS+VWQLLDASLDDEGLLE A +K  KWPTR
Sbjct: 192  MKSIDDVLHLSQIFGLQVCEPGALVVEFIFSIVWQLLDASLDDEGLLELAPEKKSKWPTR 251

Query: 61   PQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWG 120
             QDM+IDG D F +KR++  EGL + NT MAIE+IG+F QNKVTS+ILYLA  NM SHWG
Sbjct: 252  SQDMDIDGQDSFNEKRTDRQEGLCKVNTVMAIEIIGDFFQNKVTSKILYLARRNMFSHWG 311

Query: 121  GFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLM 180
             FI+RLR+LA  S ALRNSK I+P+ALLQL SD R  L R+ KT+ QK+ HAV   GSL+
Sbjct: 312  SFIQRLRVLAANSTALRNSKHISPDALLQLTSDARIVLTRECKTSLQKQFHAVVASGSLI 371

Query: 181  SLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFL 240
            S AGQC+G S SALWLPID+FLED MD +QV ATSAVE LTGLVKALQ VNGT+WH+TFL
Sbjct: 372  SSAGQCHGVSWSALWLPIDMFLEDTMDDSQVVATSAVETLTGLVKALQAVNGTSWHNTFL 431

Query: 241  GLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPSN 300
            G+WIAALRL+QRERDPSEGPVPR+D+ LCM+LS+T L + +IIEEEES LIDE  +SP+N
Sbjct: 432  GVWIAALRLVQRERDPSEGPVPRLDTCLCMLLSITPLAIVNIIEEEESTLIDEAGRSPTN 491

Query: 301  LPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYY 360
            L K+KQ   + RKDL++SLQLLGD+E +LT P  +  +ANQA AKA+MF+SG+T G+GY 
Sbjct: 492  LRKEKQISVKHRKDLISSLQLLGDYEGLLTVPQSLSLVANQAVAKAMMFVSGVTSGSGYL 551

Query: 361  ESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGW 420
            + +SMN L  +C GNMRHLIVEACIARNLLDTSAYLWPGYVN   SNQ+P S+   M GW
Sbjct: 552  DCMSMNDLPMNCSGNMRHLIVEACIARNLLDTSAYLWPGYVNGR-SNQLPRSVPGPMPGW 610

Query: 421  SSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWS 480
            SSLMKGSPLTP + N LV TPASSLAEIEK+YEIAVNGSDDEKI AA +LCGASLVRGW+
Sbjct: 611  SSLMKGSPLTPPMINVLVSTPASSLAEIEKIYEIAVNGSDDEKISAAAILCGASLVRGWN 670

Query: 481  VQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLL 540
            +QE+T+ FI KLLSPPVPADYSG++SHLIGYA  LN LLVGISSVDC+QI+SLHG VP L
Sbjct: 671  IQEHTVFFITKLLSPPVPADYSGTDSHLIGYAPFLNVLLVGISSVDCVQIYSLHGLVPQL 730

Query: 541  AAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQ-LTVDM 599
            A ALMPICEVFGS  P  S TL++GEE S + VFSNAF +L+RLWRF+ PPLE  +  D+
Sbjct: 731  AGALMPICEVFGSCAPKVSCTLTTGEEISSHQVFSNAFNLLLRLWRFNHPPLEHVMGGDI 790

Query: 600  PLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYR 659
            P V SQL+PEYLLLVRNS+LA+ G + K   K +R S+    S +PIFMDSFPKLK WYR
Sbjct: 791  PPVGSQLTPEYLLLVRNSQLANSGNTTKGPFKYRRPSRISSPSPEPIFMDSFPKLKLWYR 850

Query: 660  QNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVS 719
            Q++ CIAS L+GLVHGT VH +VDA+L  MFRK+ R G PLT   SGS+NSSGSG ED S
Sbjct: 851  QHQACIASALSGLVHGTPVHQVVDAVLNMMFRKMGRGGQPLTPTASGSSNSSGSGPEDAS 910

Query: 720  IKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAE 779
            ++LK+PAWDILEA PFVLDAAL ACAHGRLSPRELATGLK+LSD LPA+LAT+ SYFSAE
Sbjct: 911  LRLKLPAWDILEAIPFVLDAALTACAHGRLSPRELATGLKDLSDFLPASLATIASYFSAE 970

Query: 780  VTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAA 839
            VTRG+WKPAFMNGTDWPSPA NLS +EQQIKK+LAATGVDVP++A  G+SPATLPLPLAA
Sbjct: 971  VTRGIWKPAFMNGTDWPSPAANLSMVEQQIKKVLAATGVDVPSLAAVGSSPATLPLPLAA 1030

Query: 840  LVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSAS 899
            LVSLTIT+KLD+A++R L +VG  L+SLA+ CPWPCMPI+ASLWAQKVKRW D+L+FSAS
Sbjct: 1031 LVSLTITYKLDRATERLLTVVGPALNSLAAGCPWPCMPIIASLWAQKVKRWADYLIFSAS 1090

Query: 900  GTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGIL 959
             TVFH+ +DAVVQLLKSCFTSTLGL SS   SNGGVGALLGHGFGSH+SGG+SPV PGIL
Sbjct: 1091 RTVFHHKSDAVVQLLKSCFTSTLGLNSSPVSSNGGVGALLGHGFGSHYSGGMSPVAPGIL 1150

Query: 960  YLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAM 1019
            YLRVHR VRDVMFM E +LS+LM  VRDIASCGLP+E+LEKLKKTK+GMRYGQVSLAAAM
Sbjct: 1151 YLRVHRDVRDVMFMTEVVLSLLMQSVRDIASCGLPKERLEKLKKTKYGMRYGQVSLAAAM 1210

Query: 1020 TRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYAL 1079
            TR KLAASLGAS+VWISGG +LV SL+ ETLPSWFISVHG   EG ES  M  MLGGYAL
Sbjct: 1211 TRVKLAASLGASIVWISGGLTLVQSLIKETLPSWFISVHGSEHEGTESEEMAAMLGGYAL 1270

Query: 1080 AYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFV 1139
            AYFAV C TFAWGVD  S ASK+RP VLG HLEFLA+ALD KIS+GC   TWRAYV   V
Sbjct: 1271 AYFAVLCGTFAWGVDLMSPASKRRPKVLGAHLEFLANALDGKISLGCVWGTWRAYVPALV 1330

Query: 1140 TLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVE 1195
            TL+VGCTP W+ E++V+ LKR+SKGLRQW+EEELA+ LLG+GG+ AMGAAA++IVE
Sbjct: 1331 TLMVGCTPAWIPEVDVEVLKRVSKGLRQWNEEELAIALLGLGGIHAMGAAAEVIVE 1386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359479864\|ref\|XP_002271735.2\| PREDICTED: uncharacterized protein LOC100254459 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224128668\|ref\|XP_002320389.1\| predicted protein [Populus trichocarpa] gi\|222861162\|gb\|EEE98704.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224068803\|ref\|XP_002302829.1\| predicted protein [Populus trichocarpa] gi\|222844555\|gb\|EEE82102.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255551487\|ref\|XP_002516789.1\| conserved hypothetical protein [Ricinus communis] gi\|223543877\|gb\|EEF45403.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|225432512\|ref\|XP_002277484.1\| PREDICTED: uncharacterized protein LOC100247741 [Vitis vinifera] gi\|297736973\|emb\|CBI26174.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449444909\|ref\|XP_004140216.1\| PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224100311\|ref\|XP_002311827.1\| predicted protein [Populus trichocarpa] gi\|222851647\|gb\|EEE89194.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356557874\|ref\|XP_003547235.1\| PREDICTED: uncharacterized protein LOC100782680 [Glycine max]	Back alignment and taxonomy information

>gi\|356549015\|ref\|XP_003542894.1\| PREDICTED: uncharacterized protein LOC100812937 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1198
TAIR\|locus:2088050		1309	RFR1 "AT3G23590" [Arabidopsis	0.715	0.654	0.560	0.0
TAIR\|locus:2039356		1275	REF4 "AT2G48110" [Arabidopsis	0.628	0.590	0.612	3.69999999883e-315

TAIR\|locus:2088050 RFR1 "AT3G23590" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2492 (882.3 bits), Expect = 0., Sum P(2) = 0.
 Identities = 484/863 (56%), Positives = 611/863 (70%)

Query:   312 RKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATS 371
             R DLVTSLQ+LGDF  +L PP  V S AN+AA KAI+F+SG  VG   ++ ++M  +  +
Sbjct:   425 RDDLVTSLQVLGDFPGLLAPPKCVVSAANKAATKAILFLSGGNVGKSCFDVINMKDMPVN 484

Query:   372 CLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTP 431
             C GNMRHLIVEACIARN+LD SAY WPGYVN    NQ+P S+  ++  WSS +KG+PL  
Sbjct:   485 CSGNMRHLIVEACIARNILDMSAYSWPGYVNGR-INQIPQSLPNEVPCWSSFVKGAPLNA 543

Query:   432 SLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIK 491
             ++ N LV  PASSLAE+EK++E+AV GSDDEKI AATVLCGASL RGW++QE+T+ ++ +
Sbjct:   544 AMVNTLVSVPASSLAELEKLFEVAVKGSDDEKISAATVLCGASLTRGWNIQEHTVEYLTR 603

Query:   492 LLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVF 551
             LLSPPVPADYS +E+HLIGYA +LN ++VGI SVD IQIFSLHG VP LA +LMPICE F
Sbjct:   604 LLSPPVPADYSRAENHLIGYACMLNVVIVGIGSVDSIQIFSLHGMVPQLACSLMPICEEF 663

Query:   552 GSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYL 611
             GS  P+ SWTL SGE  S Y+VFSNAFT+L++LWRF+ PP+E    D+P V SQL+PE+L
Sbjct:   664 GSYTPSVSWTLPSGEAISAYSVFSNAFTLLLKLWRFNHPPIEHGVGDVPTVGSQLTPEHL 723

Query:   612 LLVRNSKLASFGTSPKDQMKSKRFSKNIKF-STDPIFMDSFPKLKRWYRQNEECIASTLT 670
             L VRNS L S     +D+ + KR S+  +  S  P+F+DSFPKLK WYRQ++ CIA+TL+
Sbjct:   724 LSVRNSYLVSSEILDRDRNR-KRLSEVARAASCQPVFVDSFPKLKVWYRQHQRCIAATLS 782

Query:   671 GLVHGTSVHLIVDALLTKMFRKINRSGTPLXXXXXXXXXXXXXXLEDVSIKLKVPAWDIL 730
             GL HG+ VH  V+ALL   F K+  S T L               ED +I+ + PAWDIL
Sbjct:   783 GLTHGSPVHQTVEALLNMTFGKVRGSQT-LNPVNSGTSSSSGAASEDSNIRPEFPAWDIL 841

Query:   731 EATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFM 790
             +A P+V+DAAL AC HGRLSPR+LATGLK+L+D LPA+LAT+VSYFSAEV+RG+WKP FM
Sbjct:   842 KAVPYVVDAALTACTHGRLSPRQLATGLKDLADFLPASLATIVSYFSAEVSRGVWKPVFM 901

Query:   791 NGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNXXXXXXXXXXXXXXXXITFKLD 850
             NG DWPSPATNLS++E+ I KILA TGVD+P++A GG+                IT+K+D
Sbjct:   902 NGVDWPSPATNLSTVEEYITKILATTGVDIPSLAPGGSSPATLPLPLAAFVSLTITYKID 961

Query:   851 KASDRFXXXXXXXXXXXXXXCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAV 910
             KAS+RF              CPWPCMPIVASLW QK KRW DFLVFSAS TVF +N DAV
Sbjct:   962 KASERFLNLAGPALECLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNQDAV 1021

Query:   911 VQLLKSCFTSTLGLTSSHNYSNXXXXXXXXXXXXXXXXXXISPVGPGILYLRVHRSVRDV 970
             +QLL++CF++TLGL ++   ++                  ISPV PGILYLR++R++RD 
Sbjct:  1022 IQLLRNCFSATLGLNAAPMSNDGGVGALLGHGFGSHFYGGISPVAPGILYLRMYRALRDT 1081

Query:   971 MFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSXXXXXXXXXXXXXXGA 1030
             + + EEILS+L+H V DIA   L +EKLEKLK  K+G RYGQ S               A
Sbjct:  1082 VSVSEEILSLLIHSVEDIAQNRLSKEKLEKLKTVKNGSRYGQSSLATAMTQVKLAASLSA 1141

Query:  1031 SLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFA 1090
             SLVW++GG  +VH L+ ET+PSWF+S     +E G S  +V  L G+ALAYF V C    
Sbjct:  1142 SLVWLTGGLGVVHVLIKETIPSWFLSTDKSDREQGPSD-LVAELRGHALAYFVVLCGALT 1200

Query:  1091 WGVDSESRASKKR-PTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTW 1149
             WGVDS S ASK+R   +LG+HLEF+ASALD KISVGC+ ATWR Y+SG V+L+V C P W
Sbjct:  1201 WGVDSRSSASKRRRQAILGSHLEFIASALDGKISVGCETATWRTYISGLVSLMVSCLPLW 1260

Query:  1150 MLEINVDALKRLSKGLRQWDEEE 1172
             + EI+ + LK LS GLR+W ++E
Sbjct:  1261 VTEIDTEVLKSLSNGLRKWGKDE 1283

GO:0003674 "molecular_function" evidence=ND

GO:0016592 "mediator complex" evidence=IDA

GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IMP

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR\|locus:2039356 REF4 "AT2G48110" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4IN69	MD33B_ARATH	No assigned EC number	0.6086	0.9323	0.8760	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023679001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (1323 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1198
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 57.9 bits (139), Expect = 2e-08
 Identities = 61/403 (15%), Positives = 116/403 (28%), Gaps = 112/403 (27%)

Query: 555 IPNASWTLSSGEEFSCYAVFSNAFTILVRL-WRFHKPPLEQLTVDMPLVASQLSPEYLLL 613
           + +   ++ S EE     +  +A +  +RL W       E   V    V   L   Y  L
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--MVQK-FVEEVLRINYKFL 94

Query: 614 VRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGL- 672
           +  S + +    P    +     ++  ++ + +F     K      Q    +   L  L 
Sbjct: 95  M--SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF----AKYNVSRLQPYLKLRQALLELR 148

Query: 673 ------VHGT-----SVHLIVDAL-----LTKMFRKINRSGTPLTSATSGSTNSSGSGLE 716
                 + G      +  + +D         KM  KI             + NS  + LE
Sbjct: 149 PAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKI-------FWLNLKNCNSPETVLE 200

Query: 717 DVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPR----ELATGLKEL------SDCLP 766
                       +L+   + +D    + +    + +     +   L+ L       +CL 
Sbjct: 201 ------------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL- 247

Query: 767 ATLATVVSYFSAEVTRGLWKP----AFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPT 822
             L          V   +       AF           NLS       KIL  T     T
Sbjct: 248 --L----------VLLNVQNAKAWNAF-----------NLSC------KILLTTRFKQVT 278

Query: 823 VAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASS-CPWPCMPIVAS 881
             +   +   + L        ++T   D+     L  +      L          P   S
Sbjct: 279 DFLSAATTTHISL-----DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT--TNPRRLS 331

Query: 882 LWAQKVK----RWNDFLVFSASGTVFHYNTDAVVQLLKSCFTS 920
           + A+ ++     W+++          H N D +  +++S    
Sbjct: 332 IIAESIRDGLATWDNWK---------HVNCDKLTTIIESSLNV 365

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00