Citrus Sinensis ID: 001007

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190-
MAENKNRWNWEVSGFEPRNSSSSSLQFEREDRRPDAPVVRRYAISAASALPHSSEISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLISLDGILNQVKVFTSL
ccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEEEccccccccccEEEEccccEEEEEccccccccccccEEccccccccccHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEEEEEEcccccccccccccccccEEcccccccEEEEEEEEccHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccccccEEEEEEcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHEEccccccccccccHHHHHHHHcccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccHHHHHccccccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHcc
ccccccccccEcccccccccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccHHHcccEEEEccccEEEEccccccccccccEEEEccEccccccHHHHHHHcHHHHHHHHccccEEEEEEccccccHHHHHcEccccccccHHHHHHHHHHHHHHccccEEEEEEEEEEEEEcHHHHHHccccccccEEEEccccccccccEEEEEccHHHHHHHHHHccccccEccccccccEEEEEEEEEEEEccccEEEEEEEEEEEccccccccccccccccccccHHHccHHHHHHHHHHHHHHccccccHHHcHHHHHHHHccccccEEEEEEEEccEHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccHHHHccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHcccEcccHHHHHHcccccccccccccccccccccEEcccccccEEEEccHHHHcHHHHHHHHHccccccccccccccccHHHcHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHccHEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHcHccHHccEEEEccc
maenknrwnwevsgfeprnssssslqferedrrpdapvVRRYAISAasalphsseiSKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARISPLINEKKRLFNDLLTakgnikvfcrtrplfedegpsvveftddctirvntgddtisnpkkdfefdrvygphvgqaelfsdvqpFVQSALDGYNVSIFaygqthsgkthtmegsshdrglYARCFEELfdlsnsdttatARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQsrgndvskfnVSHLIIMIHIYYNNLITGENLYSKLSLVDlagsegliaeddsgerITDVLHVMKSLSALGDVLSsltsrkdivpyeNSMLTKVLADSLGESSKTLMIVnicpnaanMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSdlksenymlaDKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRnealhssevrstirsepmpavssvlrttgdgmdssAVSKKLEEELKKRDALIERLHEENEKLFDRLTEkassvsspqlssplskgsvnvqprdmarndnnnkglpvdvaplplsadkteGTVALVKSSsekikttpaGEYLTAAlndfnpeqydnlaVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLarspelqsimvspvecfleksntgrsrsssrgssparspvhyvdEKIQGfkinlkpekkskLSSVVLRMrgidqdtwrhqvtggKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFlsvtgddasggttgQLELLSTAIMDGwmaglggavppstDALGQLLSEYAKRVYNSQLQHLKDIAGtlatedaedASQVSKLRSALESVDHRRRKVLQQMRSDVALLTleeggspirnpstaaEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERmpslldidhpcaQRQIADARRMVEVLQQMRSDVALLTleeggspiqnpstaAEDARLASLISLDGILNQVKVFTSL
maenknrwnwevsgfeprnssssslqferedrrpdapVVRRYAISaasalphsseiskQALSTKVQRLKDEIKFVKEDYLELRQEatdlqeysnakidrVTRYLGVLADKTRKLDQVALEAearisplinekKRLFNDLLTAKGNIKVFCRtrplfedegpsvveftddctirvntgddtisnpkKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSltsrkdivpyeNSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTvlslgnrdtikkwRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSiesqrnealhssevrstirsepmpavssvlrttgdgmdssaVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAssvsspqlssplskgsvnvQPRDMArndnnnkglpvdVAPLPLSADKTEGTVALVksssekikttpAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKmeptrvmdtmlVSRVRILYIRSLLarspelqsimvSPVECFLEKsntgrsrsssrgssparspvhyvDEKIqgfkinlkpekksklSSVVLRmrgidqdtwrhqvtggkLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVtgddasggTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLrsalesvdhrrRKVLQQMRSDVALltleeggspirnpSTAAEDARLASLISLDGILNQVKDAvrqssvntlsrskkkaMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLIsldgilnqvkvftsl
MAENKNRWNWEVSGFEPRNSSSSSLQFEREDRRPDAPVVRRYAISAASALPHSSEISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNqvaqllqleqeqkmqiqqRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAssvsspqlssplskgsVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTgrsrsssrgssparspVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLISLDGILNQVKVFTSL
*******************************************************************LKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTH*************RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAA******************VLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK***YM***********************************************************************************************************************************************************************************************GEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFL************************VDEKIQGFKIN**********SVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGT*************************************************************ASLISLDGILNQV**********************************LDIDHPCAQRQIADARRMVEVLQQMRSDVALLT*******************LASLISLDGILNQVKVF***
*****NR****************************************************************************************************************EAEARISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFED*****************************FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP*****************IELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGL*******E**TDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQD************************************************************************************************************************************************************************************************************************************************LTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLL***********SPV*******************************KIQGF*************SVVLRMR***********************KSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSK**SA**S**HRRRKVLQQMRSDVALLT******************RLASLISLDGILNQVKD******************LTSLDELAERMPSLLDIDHPCAQRQIADARRMV**********************************ASLISLDGILNQVKVFTSL
MAENKNRWNWEVSG********************DAPVVRRYAISAASALPHSSEISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTH***********HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQE*********STIKTLQAKINSIESQ******************MPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDR**********************NVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLE********************VHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLA***********KLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLISLDGILNQVKVFTSL
******************************************************EISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG***********ERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS***************************SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK**************************************************GTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEK*****************SPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQ*************************EDARLASLISLDGILNQVKVFTSL
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MAENKNRWNWEVSGFEPRNSSSSSLQFEREDRRPDAPVVRRYAISAASALPHSSEISxxxxxxxxxxxxxxxxxxxxxxxxxxxxATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKxxxxxxxxxxxxxxxxxxxxxxxxxxxxIQQRDSTxxxxxxxxxxxxxxxxxxxxxSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVxxxxxxxxxxxxxxxxxxxxxxxxLFDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEEGGSPIQNPSTAAEDARLASLISLDGILNQVKVFTSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1191 2.2.26 [Sep-21-2011]
Q9LX991273 Geminivirus Rep-interacti yes no 0.946 0.885 0.731 0.0
O81635987 Kinesin-4 OS=Arabidopsis no no 0.292 0.352 0.373 4e-61
O35231824 Kinesin-like protein KIFC yes no 0.281 0.406 0.372 4e-55
Q9BVG8833 Kinesin-like protein KIFC yes no 0.281 0.402 0.372 7e-54
F4JGP4790 Kinesin-5 OS=Arabidopsis no no 0.345 0.520 0.334 1e-53
P46875754 Kinesin-3 OS=Arabidopsis no no 0.291 0.460 0.358 5e-53
P28739770 Kinesin-like protein klpA yes no 0.283 0.438 0.368 2e-52
Q07970793 Kinesin-1 OS=Arabidopsis no no 0.286 0.430 0.352 3e-52
P46864745 Kinesin-2 OS=Arabidopsis no no 0.287 0.460 0.355 2e-50
Q9US03817 Kinesin-like protein 2 OS yes no 0.294 0.429 0.350 2e-49
>sp|Q9LX99|GRIMP_ARATH Geminivirus Rep-interacting motor protein OS=Arabidopsis thaliana GN=GRIMP PE=1 SV=1 Back     alignment and function desciption
 Score = 1681 bits (4354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 833/1138 (73%), Positives = 972/1138 (85%), Gaps = 11/1138 (0%)

Query: 6    NRWNWEVSGFEPRNSSSSSLQFEREDRRPDAPVVRRYAISAASALPHSSEISKQALSTKV 65
            NRWNWEVSGFEPR SSS++   E    R   P++RR +IS  S  P      KQA+++KV
Sbjct: 9    NRWNWEVSGFEPRKSSSNASFAESTGHRTTGPLLRRNSISTPSLPP------KQAIASKV 62

Query: 66   QRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARI 125
              LK+++K  KEDYLELRQEATDLQEYSNAK+DRVTRYLGVLA+K+RKLDQ  LE EARI
Sbjct: 63   NGLKEKVKLAKEDYLELRQEATDLQEYSNAKLDRVTRYLGVLAEKSRKLDQFVLETEARI 122

Query: 126  SPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPK 185
            SPLINEKKRLFNDLLTAKGNIKVFCR RPLFEDEGPSV+EF  DCTI VNT DDT+SNPK
Sbjct: 123  SPLINEKKRLFNDLLTAKGNIKVFCRARPLFEDEGPSVIEFPGDCTICVNTSDDTLSNPK 182

Query: 186  KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGL 245
            KDFEFDRVYGPHVGQA LFSDVQPFVQSALDG NVSI +YGQT++GKT+TMEGS+HDRGL
Sbjct: 183  KDFEFDRVYGPHVGQAALFSDVQPFVQSALDGSNVSILSYGQTNAGKTYTMEGSNHDRGL 242

Query: 246  YARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIE 305
            YARCFEELFDL+NSD+T+T+RF+F+++VFE+YNEQ+R+LL +T + L  I +   ES IE
Sbjct: 243  YARCFEELFDLANSDSTSTSRFSFSLSVFEIYNEQIRDLLSETQSNLPNINMDLHESVIE 302

Query: 306  LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVD 365
            L QEKVDNPLEF  VLKSAF +RGN  SKFNV+HLI+ IHIYY+N ITGEN+YSKLSLVD
Sbjct: 303  LGQEKVDNPLEFLGVLKSAFLNRGNYKSKFNVTHLIVSIHIYYSNTITGENIYSKLSLVD 362

Query: 366  LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLG 425
            LAGSEGLI E+DSG+ +TD+LHVM S+SALGDVLSSLTS KD +PY+NS+LT+VLADSLG
Sbjct: 363  LAGSEGLIMENDSGDHVTDLLHVMNSISALGDVLSSLTSGKDSIPYDNSILTRVLADSLG 422

Query: 426  ESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYE 485
             SSKTLMIVNICP+   +SET+S LN+++RAR+TV SLGNRDTIKKWRD+A+DARKEL E
Sbjct: 423  GSSKTLMIVNICPSVQTLSETISCLNYAARARNTVPSLGNRDTIKKWRDVASDARKELLE 482

Query: 486  REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKI 545
            +E+E Q+LKQE++GL++ALK+ANDQCVLLY+EVQ+AWKVSFTLQSDLKSEN ML DKH++
Sbjct: 483  KERENQNLKQEVVGLKKALKDANDQCVLLYSEVQRAWKVSFTLQSDLKSENIMLVDKHRL 542

Query: 546  EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTI 605
            EKEQN+QLRNQ+AQ LQL+QEQK+Q+QQ+DS I+ LQAKI  +ESQ +EA+ S   R+  
Sbjct: 543  EKEQNSQLRNQIAQFLQLDQEQKLQMQQQDSAIQNLQAKITDLESQVSEAVRSDTTRTGD 602

Query: 606  RSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASSV 665
              +     S + +      DSS+V+KKLEEELKKRDALIERLHEENEKLFDRLTE++ +V
Sbjct: 603  ALQSQDIFSPIPKAVEGTTDSSSVTKKLEEELKKRDALIERLHEENEKLFDRLTERSMAV 662

Query: 666  SSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIK 725
            S+ Q+ SP  + S N+QP     N N  +G   +   LP + +K  G + LVKS ++ +K
Sbjct: 663  ST-QVLSPSLRASPNIQP----ANVNRGEGYSAEAVALPSTPNKNNGAITLVKSGTDLVK 717

Query: 726  TTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAV 785
            TTPAGEYLTAALNDF+PE+Y+ LA I+DGANKLLMLVLAAVIKAGASREHEILAEIRD+V
Sbjct: 718  TTPAGEYLTAALNDFDPEEYEGLAAIADGANKLLMLVLAAVIKAGASREHEILAEIRDSV 777

Query: 786  FAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSS 845
            F+FIRKMEP RVMDTMLVSRVRILYIRSLLARSPELQ+I VSPVECFLEK NTGRS+S+S
Sbjct: 778  FSFIRKMEPRRVMDTMLVSRVRILYIRSLLARSPELQTIRVSPVECFLEKPNTGRSKSTS 837

Query: 846  RGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQ 905
            RGSSP RSPV Y+D +I GFK+N+K E+++KL+SVV RMRG++QD  R QVTG KLRE+Q
Sbjct: 838  RGSSPGRSPVRYLDTQIHGFKVNIKAERRNKLASVVSRMRGLEQDAGRQQVTGVKLREMQ 897

Query: 906  EEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLST 965
            +EAKSFA GNKALAALFVHTPAGELQRQIR WLAENFEFLSVT DD SGG  GQLELLST
Sbjct: 898  DEAKSFAIGNKALAALFVHTPAGELQRQIRLWLAENFEFLSVTSDDVSGGNGGQLELLST 957

Query: 966  AIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSK 1025
            AIMDGWMAGLG AVPP TDALGQLLSEYAKRVY SQ+QH+KDIAGTLA E+AEDA QVSK
Sbjct: 958  AIMDGWMAGLGAAVPPHTDALGQLLSEYAKRVYTSQMQHMKDIAGTLAAEEAEDAGQVSK 1017

Query: 1026 LRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQV 1085
            LRSALESVDH+RRK+LQQM+SD ALL LEEG SPI NPSTAAED+RLASLISLDGIL QV
Sbjct: 1018 LRSALESVDHKRRKILQQMKSDAALLNLEEGSSPIPNPSTAAEDSRLASLISLDGILKQV 1077

Query: 1086 KDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQ 1143
            K+  RQ+SV+ LS+SKKKA+L SLDEL ERMPSLLDIDHPCAQR+IA A ++VE + +
Sbjct: 1078 KEITRQASVHVLSKSKKKALLESLDELTERMPSLLDIDHPCAQREIATAHQLVETIPE 1135
Acts as a mitotic kinesin, but its function is not restricted to mitosis.
Arabidopsis thaliana (taxid: 3702)
>sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2 Back     alignment and function description
>sp|O35231|KIFC3_MOUSE Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4 Back     alignment and function description
>sp|Q9BVG8|KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4 Back     alignment and function description
>sp|F4JGP4|ATK5_ARATH Kinesin-5 OS=Arabidopsis thaliana GN=ATK5 PE=2 SV=1 Back     alignment and function description
>sp|P46875|ATK3_ARATH Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1 Back     alignment and function description
>sp|P28739|KLPA_EMENI Kinesin-like protein klpA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=klpA PE=2 SV=3 Back     alignment and function description
>sp|Q07970|ATK1_ARATH Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1 Back     alignment and function description
>sp|P46864|ATK2_ARATH Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1 Back     alignment and function description
>sp|Q9US03|KLP2_SCHPO Kinesin-like protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=klp2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1191
3565677691283 PREDICTED: geminivirus Rep-interacting m 0.947 0.879 0.774 0.0
3565267551282 PREDICTED: geminivirus Rep-interacting m 0.947 0.880 0.775 0.0
4494513931276 PREDICTED: geminivirus Rep-interacting m 0.942 0.879 0.769 0.0
4494964021276 PREDICTED: LOW QUALITY PROTEIN: geminivi 0.942 0.879 0.768 0.0
3564977041280 PREDICTED: geminivirus Rep-interacting m 0.946 0.880 0.755 0.0
3565015881272 PREDICTED: geminivirus Rep-interacting m 0.941 0.881 0.758 0.0
2978111531273 hypothetical protein ARALYDRAFT_487877 [ 0.944 0.883 0.742 0.0
722556271257 117M18_26 [Brassica rapa] 0.948 0.898 0.723 0.0
152381691273 geminivirus Rep-interacting motor protei 0.946 0.885 0.731 0.0
1453343671274 geminivirus Rep-interacting motor protei 0.947 0.885 0.730 0.0
>gi|356567769|ref|XP_003552088.1| PREDICTED: geminivirus Rep-interacting motor protein-like [Glycine max] Back     alignment and taxonomy information
 Score = 1791 bits (4638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 885/1142 (77%), Positives = 1010/1142 (88%), Gaps = 13/1142 (1%)

Query: 1    MAENKNRWNWEVSGFEPRNSSS---SSLQFEREDRRPDAPVVRRYAISAASALPHSSEIS 57
            MAE KNRW+W+V+GF+P  SS+   S    E  DR+P AP+VRRY+ISA S LP S    
Sbjct: 1    MAEQKNRWSWDVAGFDPWKSSTPPQSPAAAEHGDRKPSAPLVRRYSISATSVLPQS---- 56

Query: 58   KQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQV 117
            K A++ K+QRLKD++K  KEDYL+LRQEA++LQEYSNAK+DRVTRYLGVLA+KTR LDQV
Sbjct: 57   KHAVAFKLQRLKDQVKLAKEDYLQLRQEASELQEYSNAKLDRVTRYLGVLAEKTRNLDQV 116

Query: 118  ALEAEARISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTG 177
            ALE EARISPLINEK+RLFNDLLT+KGNI+VFCRTRPLFEDEGPSVVEF DD TIRVNTG
Sbjct: 117  ALETEARISPLINEKRRLFNDLLTSKGNIRVFCRTRPLFEDEGPSVVEFPDDYTIRVNTG 176

Query: 178  DDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237
            D+++SN KKDFEFDRVYGPHVGQAELF DVQP VQSALDGYNVSIFA+GQTHSGKTHTME
Sbjct: 177  DESLSNAKKDFEFDRVYGPHVGQAELFCDVQPLVQSALDGYNVSIFAFGQTHSGKTHTME 236

Query: 238  GSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL 297
            GSS+DRGLYARCFEELFDL+N D T+T+R+ F VTV ELYNEQ R+LL + G    K+ L
Sbjct: 237  GSSYDRGLYARCFEELFDLANLDATSTSRYKFCVTVCELYNEQTRDLLLEAGKSAPKLCL 296

Query: 298  QSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENL 357
             S E  IELVQE VDNPLEFS+VLK++ Q+R ND+S  NVSHLI+ IH++YNNLITGEN 
Sbjct: 297  GSPECFIELVQENVDNPLEFSEVLKTSLQTRENDLSNNNVSHLIVTIHVFYNNLITGENS 356

Query: 358  YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLT 417
            YSKLSLVDLAGSEGLI EDDSG+R+TD+LHVMKSLSALGDVLSSLTS+KDI+PYENS+LT
Sbjct: 357  YSKLSLVDLAGSEGLITEDDSGDRVTDLLHVMKSLSALGDVLSSLTSKKDIIPYENSLLT 416

Query: 418  KVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIAN 477
            K+LADSLG SSK LMIVN+CP+ +N+SETLSSLNFS+RAR++ LSLGNRDTIKKWRD+AN
Sbjct: 417  KLLADSLGGSSKALMIVNVCPSISNLSETLSSLNFSARARNSTLSLGNRDTIKKWRDVAN 476

Query: 478  DARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENY 537
            DARKEL E+EKEI DLKQE L L+QALK+ANDQC+LL+NEVQKAWKVS  LQ+DLKSE+ 
Sbjct: 477  DARKELNEKEKEIHDLKQEGLKLKQALKDANDQCILLFNEVQKAWKVSSVLQTDLKSEHV 536

Query: 538  MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 597
            +L+DKHKIEKEQN QLRNQVAQLL+LEQ+QK+QIQ++DSTI++LQAKI ++E+Q NEA+ 
Sbjct: 537  LLSDKHKIEKEQNNQLRNQVAQLLRLEQDQKLQIQEQDSTIQSLQAKIRTLETQFNEAIK 596

Query: 598  SSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDR 657
            SSE RST   E   A  S    TGDG+DSSAV+KKL+EELKKRDALIERLHEENEKLFDR
Sbjct: 597  SSESRSTFVYETESADQSNSGPTGDGIDSSAVTKKLDEELKKRDALIERLHEENEKLFDR 656

Query: 658  LTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALV 717
            LT+KAS+  SP+LSSPL++GS NVQPRD+  + +      + V P PL+ DK +GTVALV
Sbjct: 657  LTQKASTAGSPKLSSPLARGSANVQPRDIGSSRS------MGVLPSPLATDKNDGTVALV 710

Query: 718  KSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAGASREHEI 777
            K+ SE +KTTPAGEYLTAALNDF+P+QY+  A ISDGANKLLMLVLAAVIKAGASREHEI
Sbjct: 711  KTGSEIVKTTPAGEYLTAALNDFDPDQYEGHAAISDGANKLLMLVLAAVIKAGASREHEI 770

Query: 778  LAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSN 837
            LAEI+D+VF+FIRKMEP RVMDTMLVSRVRILYIRSLLARSPELQSI V PVECFLEK+N
Sbjct: 771  LAEIKDSVFSFIRKMEPKRVMDTMLVSRVRILYIRSLLARSPELQSIKVLPVECFLEKTN 830

Query: 838  TGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDTWRHQVT 897
            TGRSRSSSRGSSP RSPV YVDE+IQGFK+NLKPEKKSK SSVVL++RGID+D WR QVT
Sbjct: 831  TGRSRSSSRGSSPGRSPVLYVDEQIQGFKVNLKPEKKSKFSSVVLKIRGIDEDIWRQQVT 890

Query: 898  GGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTT 957
            GGKLREI EEAKSFA GN+ALAALFVHTPAGELQRQIRSWLAENFEFLS+TG+DASGG+T
Sbjct: 891  GGKLREITEEAKSFAIGNRALAALFVHTPAGELQRQIRSWLAENFEFLSLTGEDASGGST 950

Query: 958  GQLELLSTAIMDGWMAGLGGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDA 1017
            GQLELLSTAIMDGWMAGLG A+PP TDALGQL  EY+KRVY SQLQHLKDIAGTLATE+A
Sbjct: 951  GQLELLSTAIMDGWMAGLGAALPPHTDALGQLFFEYSKRVYTSQLQHLKDIAGTLATEEA 1010

Query: 1018 EDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLIS 1077
            EDA+QV+KLRSALESVDH+RRK+LQQM+SD+ALLTLE GGSPI+NPSTAAEDARLASLIS
Sbjct: 1011 EDAAQVAKLRSALESVDHKRRKILQQMKSDIALLTLENGGSPIQNPSTAAEDARLASLIS 1070

Query: 1078 LDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRM 1137
            LD IL Q+KD +R SSVN LS+SKKK MLTSL+EL E+MPSLL+IDHPCAQR IADA  +
Sbjct: 1071 LDSILKQIKDIIRLSSVNILSKSKKKTMLTSLNELTEQMPSLLEIDHPCAQRHIADAHYL 1130

Query: 1138 VE 1139
            VE
Sbjct: 1131 VE 1132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356526755|ref|XP_003531982.1| PREDICTED: geminivirus Rep-interacting motor protein-like [Glycine max] Back     alignment and taxonomy information
>gi|449451393|ref|XP_004143446.1| PREDICTED: geminivirus Rep-interacting motor protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449496402|ref|XP_004160125.1| PREDICTED: LOW QUALITY PROTEIN: geminivirus Rep-interacting motor protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356497704|ref|XP_003517699.1| PREDICTED: geminivirus Rep-interacting motor protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356501588|ref|XP_003519606.1| PREDICTED: geminivirus Rep-interacting motor protein-like [Glycine max] Back     alignment and taxonomy information
>gi|297811153|ref|XP_002873460.1| hypothetical protein ARALYDRAFT_487877 [Arabidopsis lyrata subsp. lyrata] gi|297319297|gb|EFH49719.1| hypothetical protein ARALYDRAFT_487877 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|72255627|gb|AAZ66945.1| 117M18_26 [Brassica rapa] Back     alignment and taxonomy information
>gi|15238169|ref|NP_196609.1| geminivirus Rep-interacting motor protein [Arabidopsis thaliana] gi|75311662|sp|Q9LX99.1|GRIMP_ARATH RecName: Full=Geminivirus Rep-interacting motor protein; AltName: Full=Geminivirus replication protein-interacting protein gi|7671456|emb|CAB89396.1| putative protein [Arabidopsis thaliana] gi|21428315|gb|AAM49809.1| geminivirus replication protein-interacting protein [Arabidopsis thaliana] gi|332004163|gb|AED91546.1| geminivirus Rep-interacting motor protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|145334367|ref|NP_001078565.1| geminivirus Rep-interacting motor protein [Arabidopsis thaliana] gi|332004164|gb|AED91547.1| geminivirus Rep-interacting motor protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1191
TAIR|locus:20141291140 AT1G18410 [Arabidopsis thalian 0.365 0.381 0.355 1.8e-55
TAIR|locus:20278541025 AT1G73860 [Arabidopsis thalian 0.366 0.425 0.345 9.6e-55
TAIR|locus:2148543987 ATK4 "kinesin 4" [Arabidopsis 0.291 0.351 0.396 3.3e-54
TAIR|locus:2061992983 AT2G47500 [Arabidopsis thalian 0.401 0.486 0.327 4.1e-53
TAIR|locus:21016451087 KP1 "kinesin-like protein 1" [ 0.345 0.379 0.325 1e-52
TAIR|locus:2155095961 AT5G41310 [Arabidopsis thalian 0.370 0.458 0.336 4.7e-52
UNIPROTKB|F5H3M2724 KIFC3 "Kinesin-like protein KI 0.338 0.556 0.334 6.9e-51
MGI|MGI:109202824 Kifc3 "kinesin family member C 0.338 0.489 0.334 4.6e-50
UNIPROTKB|F1LPW9824 Kifc3 "Protein Kifc3" [Rattus 0.338 0.489 0.334 4.6e-50
UNIPROTKB|F1P0D6371 KIFC3 "Uncharacterized protein 0.277 0.892 0.385 8.2e-50
TAIR|locus:2014129 AT1G18410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 605 (218.0 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 165/464 (35%), Positives = 246/464 (53%)

Query:    45 SAASALPHSSEISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYL 104
             S A  +   SE+  ++ S K    +  I F  +   ELR  +  +++      D+ T   
Sbjct:   536 SKAKEMEEKSELKNRSWSQKELSYRSFISFQCQALQELRFYSKSIKQEILKVQDKYTVEF 595

Query:   105 GVLADKTRKLDQVALEAEARISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPS-- 162
               L  K  +L     +A A    ++ E ++LFN+L   KGNI+V+CR RP    +G S  
Sbjct:   596 SQLGKKLLELG----DAAANYHEVLTENQKLFNELQELKGNIRVYCRVRPFLRGQGASKT 651

Query:   163 VVEFTDDCTIRVNTGDDTISNPKKD-------FEFDRVYGPHVGQAELFSDVQPFVQSAL 215
             VVE   D       G+  + NP K        F F++VY P   QAE+FSD++P ++S L
Sbjct:   652 VVEHIGD------HGELVVLNPTKPGKDAHRKFRFNKVYSPASTQAEVFSDIKPLIRSVL 705

Query:   216 DGYNVSIFAYGQTHSGKTHTMEG----SSHDRGLYARCFEELFDLSNSDTTATARFNFAV 271
             DGYNV IFAYGQT SGKT+TM G    S  + G+  R   +LF +S S  +  A +   V
Sbjct:   706 DGYNVCIFAYGQTGSGKTYTMTGPDGASEEEWGVNYRALNDLFRISQSRKSNIA-YEVGV 764

Query:   272 TVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKV-LKSAFQSRGN 330
              + E+YNEQ+R+LL    +   +  L   ++S+  V    D  LE   + L++   S   
Sbjct:   765 QMVEIYNEQVRDLLSGILSTTQQNGLAVPDASMYPVTSTSD-VLELMSIGLQNRVVSSTA 823

Query:   331 DVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMK 390
                + + SH I+ +H+   +L TG  LY  L LVDLAGSE +   + +G+R+ +  H+ K
Sbjct:   824 LNERSSRSHSIVTVHVRGKDLKTGSALYGNLHLVDLAGSERVDRSEVTGDRLKEAQHINK 883

Query:   391 SLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 450
             SLSALGDV+ SL S+   VPY NS LT++L  SLG  +KTLM V + P+  + SE++S+L
Sbjct:   884 SLSALGDVIFSLASKSSHVPYRNSKLTQLLQSSLGGRAKTLMFVQLNPDITSYSESMSTL 943

Query:   451 NFSSRARSTVLSLGNRDTIKKWRDIANDARKELYER-EKEIQDL 493
              F+ R     + LG   + K  RD+     ++   R + EI+ L
Sbjct:   944 KFAERVSG--VELGAAKSSKDGRDVRELMEQDTIARKDDEIERL 985
GO:0003777 "microtubule motor activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0007018 "microtubule-based movement" evidence=IEA
TAIR|locus:2027854 AT1G73860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148543 ATK4 "kinesin 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061992 AT2G47500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101645 KP1 "kinesin-like protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155095 AT5G41310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F5H3M2 KIFC3 "Kinesin-like protein KIFC3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:109202 Kifc3 "kinesin family member C3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPW9 Kifc3 "Protein Kifc3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0D6 KIFC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LX99GRIMP_ARATHNo assigned EC number0.73190.94620.8853yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VII.4018.1
SubName- Full=Putative uncharacterized protein; (1269 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1191
cd01366329 cd01366, KISc_C_terminal, Kinesin motor domain, KI 1e-100
cd00106328 cd00106, KISc, Kinesin motor domain 1e-97
pfam00225326 pfam00225, Kinesin, Kinesin motor domain 4e-90
smart00129335 smart00129, KISc, Kinesin motor, catalytic domain 1e-81
cd01369325 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine 5e-66
cd01371333 cd01371, KISc_KIF3, Kinesin motor domain, kinesins 3e-58
cd01364352 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC 2e-54
cd01372341 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik 4e-53
cd01365356 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K 5e-53
cd01370338 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP 2e-49
cd01373337 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP 1e-46
cd01375334 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF 2e-46
cd01374321 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E 9e-46
cd01376319 cd01376, KISc_KID_like, Kinesin motor domain, KIF2 1e-45
cd01367322 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF 4e-43
COG5059568 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] 4e-40
cd01368345 cd01368, KISc_KIF23_like, Kinesin motor domain, KI 2e-39
PLN03188 1320 PLN03188, PLN03188, kinesin-12 family protein; Pro 1e-30
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 9e-18
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 4e-13
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
pfam13851201 pfam13851, GAS, Growth-arrest specific micro-tubul 5e-04
COG1579239 COG1579, COG1579, Zn-ribbon protein, possibly nucl 0.003
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information 
 Score =  319 bits (820), Expect = e-100
 Identities = 147/334 (44%), Positives = 197/334 (58%), Gaps = 21/334 (6%)

Query: 143 KGNIKVFCRTRPLFEDEGP---SVVEFTDDC--TIRVNTGDDTISNPKKDFEFDRVYGPH 197
           KGNI+VFCR RPL   E     SV+ F D+   TI ++ G    +  KK F FDRV+ P 
Sbjct: 1   KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPD 56

Query: 198 VGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLS 257
             Q ++F +V P VQSALDGYNV IFAYGQT SGKT+TMEG   + G+  R  E+LF+ +
Sbjct: 57  ASQEDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTA 116

Query: 258 NSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK--IRLQSL-ESSIE-LVQEKVDN 313
                    +    ++ E+YNE +R+LL        K  I+  S  E+ +  L +  V +
Sbjct: 117 EELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSS 176

Query: 314 PLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLA 367
           P E +++L    ++R       N+ S  + SH +  + I   NL TGE    KL+LVDLA
Sbjct: 177 PEEVTRLLNLGSKNRSVASTNMNEHS--SRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLA 234

Query: 368 GSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGES 427
           GSE L     +G+R+ +   + KSLSALGDV+S+L S+   VPY NS LT +L DSLG +
Sbjct: 235 GSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGN 294

Query: 428 SKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 461
           SKTLM VNI P  +N+SETL SL F+SR RS  L
Sbjct: 295 SKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain Back     alignment and domain information
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group Back     alignment and domain information
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding Back     alignment and domain information
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1191
KOG0239670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 100.0
KOG02431041 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG4280574 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0240607 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] 100.0
cd01370338 KISc_KIP3_like Kinesin motor domain, KIP3-like sub 100.0
PLN03188 1320 kinesin-12 family protein; Provisional 100.0
cd01373337 KISc_KLP2_like Kinesin motor domain, KLP2-like sub 100.0
cd01368345 KISc_KIF23_like Kinesin motor domain, KIF23-like s 100.0
KOG0242675 consensus Kinesin-like protein [Cytoskeleton] 100.0
cd01367322 KISc_KIF2_like Kinesin motor domain, KIF2-like gro 100.0
KOG0241 1714 consensus Kinesin-like protein [Cytoskeleton] 100.0
cd01365356 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p 100.0
cd01371333 KISc_KIF3 Kinesin motor domain, kinesins II or KIF 100.0
cd01369325 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy 100.0
cd01376319 KISc_KID_like Kinesin motor domain, KIF22/Kid-like 100.0
cd01366329 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ 100.0
cd01374321 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like 100.0
cd01364352 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind 100.0
cd01375334 KISc_KIF9_like Kinesin motor domain, KIF9-like sub 100.0
cd01372341 KISc_KIF4 Kinesin motor domain, KIF4-like subfamil 100.0
cd00106328 KISc Kinesin motor domain. This catalytic (head) d 100.0
KOG0247809 consensus Kinesin-like protein [Cytoskeleton] 100.0
smart00129335 KISc Kinesin motor, catalytic domain. ATPase. Micr 100.0
PF00225335 Kinesin: Kinesin motor domain; InterPro: IPR001752 100.0
KOG0246676 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0244913 consensus Kinesin-like protein [Cytoskeleton] 100.0
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 100.0
cd01363186 Motor_domain Myosin and Kinesin motor domain. Thes 100.0
KOG0239670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 99.96
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 98.71
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 96.59
PRK11637428 AmiB activator; Provisional 96.47
COG4942420 Membrane-bound metallopeptidase [Cell division and 95.88
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 95.81
PRK11637428 AmiB activator; Provisional 95.8
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 95.65
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 95.59
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 95.56
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 95.48
PF13851201 GAS: Growth-arrest specific micro-tubule binding 95.35
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 95.35
PRK09039343 hypothetical protein; Validated 95.3
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 95.18
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 95.13
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 95.09
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 95.01
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.99
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 94.75
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 94.75
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.7
KOG0996 1293 consensus Structural maintenance of chromosome pro 94.65
KOG4673961 consensus Transcription factor TMF, TATA element m 94.58
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 94.53
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 94.37
PF00038312 Filament: Intermediate filament protein; InterPro: 94.17
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 94.06
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 93.9
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 93.84
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 93.75
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 93.74
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 93.61
COG0556663 UvrB Helicase subunit of the DNA excision repair c 93.56
PRK09039343 hypothetical protein; Validated 93.52
KOG0971 1243 consensus Microtubule-associated protein dynactin 93.5
COG11961163 Smc Chromosome segregation ATPases [Cell division 93.49
COG5185622 HEC1 Protein involved in chromosome segregation, i 93.41
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 93.35
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 93.31
PF14662193 CCDC155: Coiled-coil region of CCDC155 93.24
KOG2129552 consensus Uncharacterized conserved protein H4 [Fu 93.08
KOG46431195 consensus Uncharacterized coiled-coil protein [Fun 92.99
KOG10291118 consensus Endocytic adaptor protein intersectin [S 92.99
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 92.99
PRK03918880 chromosome segregation protein; Provisional 92.95
KOG0977546 consensus Nuclear envelope protein lamin, intermed 92.9
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 92.89
PHA02562562 46 endonuclease subunit; Provisional 92.74
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 92.59
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 92.54
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 92.49
PF00038312 Filament: Intermediate filament protein; InterPro: 92.45
KOG10291118 consensus Endocytic adaptor protein intersectin [S 92.37
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 92.33
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 92.3
KOG4809654 consensus Rab6 GTPase-interacting protein involved 92.26
KOG0971 1243 consensus Microtubule-associated protein dynactin 92.25
PRK02224880 chromosome segregation protein; Provisional 92.16
PHA02562562 46 endonuclease subunit; Provisional 91.97
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 91.9
PF10174775 Cast: RIM-binding protein of the cytomatrix active 91.84
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 91.81
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 91.76
KOG0996 1293 consensus Structural maintenance of chromosome pro 91.75
COG4372499 Uncharacterized protein conserved in bacteria with 91.72
PF14662193 CCDC155: Coiled-coil region of CCDC155 91.72
KOG1937521 consensus Uncharacterized conserved protein [Funct 91.61
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 91.28
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 91.14
KOG06121317 consensus Rho-associated, coiled-coil containing p 90.75
PRK03918880 chromosome segregation protein; Provisional 90.71
PRK04863 1486 mukB cell division protein MukB; Provisional 90.67
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 90.56
PRK04863 1486 mukB cell division protein MukB; Provisional 90.52
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 90.46
PRK02224880 chromosome segregation protein; Provisional 90.38
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 90.18
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 90.16
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 90.12
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 89.99
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 89.96
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 89.93
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 89.91
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 89.81
PRK10884206 SH3 domain-containing protein; Provisional 89.76
KOG0977546 consensus Nuclear envelope protein lamin, intermed 89.61
COG4942420 Membrane-bound metallopeptidase [Cell division and 89.56
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 89.51
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 89.41
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 89.37
PRK06620214 hypothetical protein; Validated 89.32
PRK12377248 putative replication protein; Provisional 89.31
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 89.22
PRK14086617 dnaA chromosomal replication initiation protein; P 89.15
KOG09331174 consensus Structural maintenance of chromosome pro 89.12
TIGR006061311 rad50 rad50. This family is based on the phylogeno 88.93
PRK08084235 DNA replication initiation factor; Provisional 88.9
KOG2991330 consensus Splicing regulator [RNA processing and m 88.85
TIGR006061311 rad50 rad50. This family is based on the phylogeno 88.8
PRK10929 1109 putative mechanosensitive channel protein; Provisi 88.76
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 88.73
PRK06893229 DNA replication initiation factor; Validated 88.72
PF09738302 DUF2051: Double stranded RNA binding protein (DUF2 88.56
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 88.52
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 88.51
KOG09331174 consensus Structural maintenance of chromosome pro 88.46
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 88.38
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 88.37
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 88.33
PRK07952244 DNA replication protein DnaC; Validated 88.26
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 88.07
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 88.01
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 87.81
COG4372499 Uncharacterized protein conserved in bacteria with 87.79
PRK14088440 dnaA chromosomal replication initiation protein; P 87.77
KOG0963629 consensus Transcription factor/CCAAT displacement 87.76
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 87.53
PRK05642234 DNA replication initiation factor; Validated 87.48
KOG0728404 consensus 26S proteasome regulatory complex, ATPas 87.48
TIGR00362405 DnaA chromosomal replication initiator protein Dna 87.38
PF10174775 Cast: RIM-binding protein of the cytomatrix active 87.37
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 87.24
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 87.09
PRK08116268 hypothetical protein; Validated 86.94
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 86.89
PRK00149450 dnaA chromosomal replication initiation protein; R 86.62
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 86.42
KOG06121317 consensus Rho-associated, coiled-coil containing p 86.35
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 86.3
COG5185622 HEC1 Protein involved in chromosome segregation, i 86.29
PRK03992389 proteasome-activating nucleotidase; Provisional 86.17
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 85.97
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 85.85
KOG0727408 consensus 26S proteasome regulatory complex, ATPas 85.76
KOG4807593 consensus F-actin binding protein, regulates actin 85.55
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 85.47
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 85.4
PRK08903227 DnaA regulatory inactivator Hda; Validated 85.32
PRK09087226 hypothetical protein; Validated 85.16
PF13851201 GAS: Growth-arrest specific micro-tubule binding 84.86
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 84.57
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 84.55
PRK06835329 DNA replication protein DnaC; Validated 84.49
PRK14087450 dnaA chromosomal replication initiation protein; P 84.44
COG0593408 DnaA ATPase involved in DNA replication initiation 84.41
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 84.14
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 83.99
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 83.9
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 83.87
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 83.78
PF10186302 Atg14: UV radiation resistance protein and autopha 83.62
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 83.5
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 83.33
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 82.87
KOG0964 1200 consensus Structural maintenance of chromosome pro 82.39
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 82.28
KOG0963629 consensus Transcription factor/CCAAT displacement 82.12
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 81.83
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 81.75
KOG2751447 consensus Beclin-like protein [Signal transduction 81.66
COG2433652 Uncharacterized conserved protein [Function unknow 81.53
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 81.52
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 81.51
TIGR02928365 orc1/cdc6 family replication initiation protein. M 81.45
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 81.35
PRK10884206 SH3 domain-containing protein; Provisional 81.34
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 80.9
COG1484254 DnaC DNA replication protein [DNA replication, rec 80.79
PF05701522 WEMBL: Weak chloroplast movement under blue light; 80.6
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 80.56
KOG4673961 consensus Transcription factor TMF, TATA element m 80.5
PF13863126 DUF4200: Domain of unknown function (DUF4200) 80.46
PRK08727233 hypothetical protein; Validated 80.3
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 80.21
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 80.17
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=3.5e-82  Score=761.10  Aligned_cols=395  Identities=38%  Similarity=0.562  Sum_probs=334.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcChhHHHHhhhhhhccc
Q 001007           62 STKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARISPLINEKKRLFNDLLT  141 (1191)
Q Consensus        62 ~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~~~~~~l~~v~~~l~~L~~~~~~l~~~~~e~e~r~~~~~~eRrkLhN~l~e  141 (1191)
                      .+++..|++++..++..+.+++.++..++..+..       .+.........|......+.+.+ .+..+||+|||++++
T Consensus       240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~e  311 (670)
T KOG0239|consen  240 KKKIQALQQELEELKAELKELNDQVSLLTREVQE-------ALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILE  311 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            3345555555555555555555555554443322       22222222334444444455555 667889999999999


Q ss_pred             CCCCEEEEEeeCCCCCCCCC---c-eEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhHhhhcCC
Q 001007          142 AKGNIKVFCRTRPLFEDEGP---S-VVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDG  217 (1191)
Q Consensus       142 lkGnIRV~~RVRPl~~~E~~---s-vV~~~d~~tI~v~~~~~~~~~~~k~F~FD~VF~p~asQeeVFeeV~PLV~svLdG  217 (1191)
                      +||||||||||||+++++..   . ++..++...+.+..+....+...+.|.||+||+|.++|++||.++.|+|++||||
T Consensus       312 LkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDG  391 (670)
T KOG0239|consen  312 LKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDG  391 (670)
T ss_pred             hhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcC
Confidence            99999999999999988754   2 3344444456776665554444557999999999999999999999999999999


Q ss_pred             ccEEEEeeccCCCCccccccc-CCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhhcccCCCC-CCceEE
Q 001007          218 YNVSIFAYGQTHSGKTHTMEG-SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-NGLAKI  295 (1191)
Q Consensus       218 yN~~IfAYGQTGSGKTyTM~G-s~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~DLL~~~~-~~~~~i  295 (1191)
                      ||+||||||||||||||||.| +++++|||||++++||..+..... +|.|.+.++|+|||||.|+|||++.. .....|
T Consensus       392 YnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~-g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I  470 (670)
T KOG0239|consen  392 YNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKS-GWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEI  470 (670)
T ss_pred             cceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhcc-CceEEeeeehhHHHHHHHHHhccccccccceeE
Confidence            999999999999999999999 689999999999999999987766 99999999999999999999998874 444445


Q ss_pred             Eecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCC
Q 001007          296 RLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS  369 (1191)
Q Consensus       296 ~~~~--~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGS  369 (1191)
                      ..+.  ...+.+++...|.+.+++..+++.|..+|+++.|.    |||||+||+|+|...+..++..+.++|+|||||||
T Consensus       471 ~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGS  550 (670)
T KOG0239|consen  471 VDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGS  550 (670)
T ss_pred             EEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccC
Confidence            4433  45688999999999999999999999999999885    89999999999999999999999999999999999


Q ss_pred             ccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHH
Q 001007          370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS  449 (1191)
Q Consensus       370 ER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsT  449 (1191)
                      ||+++++++|+|++|+++||+||++||+||.||+.+..||||||||||+||||+|||++||+|||+|||...++.||+++
T Consensus       551 ER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~s  630 (670)
T KOG0239|consen  551 ERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCS  630 (670)
T ss_pred             cccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcccccCc
Q 001007          450 LNFSSRARSTVLSLGN  465 (1191)
Q Consensus       450 LrFAsRAr~I~~~~~n  465 (1191)
                      |+||+|++.+.+++..
T Consensus       631 L~FA~rv~~~~lG~a~  646 (670)
T KOG0239|consen  631 LRFATRVRSVELGSAR  646 (670)
T ss_pred             cchHHHhhceeccccc
Confidence            9999999999877544

>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG4280 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] Back     alignment and domain information
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>KOG0242 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group Back     alignment and domain information
>KOG0241 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>cd00106 KISc Kinesin motor domain Back     alignment and domain information
>KOG0247 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>smart00129 KISc Kinesin motor, catalytic domain Back     alignment and domain information
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport Back     alignment and domain information
>KOG0246 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0244 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01363 Motor_domain Myosin and Kinesin motor domain Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>KOG2991 consensus Splicing regulator [RNA processing and modification] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms] Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PF13863 DUF4200: Domain of unknown function (DUF4200) Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1191
3h4s_A386 Structure Of The Complex Of A Mitotic Kinesin With 4e-50
2h58_A330 Crystal Structure Of The Kifc3 Motor Domain In Comp 7e-50
1sdm_A369 Crystal Structure Of Kinesin-Like Calmodulin Bindin 9e-48
2rep_A376 Crystal Structure Of The Motor Domain Of Human Kine 1e-45
4etp_A403 C-Terminal Motor And Motor Homology Domain Of Kar3v 8e-44
2ncd_A420 Ncd (Non-Claret Disjunctional) Dimer From D. Melano 1e-43
1n6m_A409 Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY 1e-43
1cz7_A406 The Crystal Structure Of A Minus-End Directed Micro 2e-43
1mkj_A349 Human Kinesin Motor Domain With Docked Neck Linker 4e-43
1bg2_A325 Human Ubiquitous Kinesin Motor Domain Length = 325 5e-43
1f9t_A358 Crystal Structures Of Kinesin Mutants Reveal A Sign 6e-43
4atx_C340 Rigor Kinesin Motor Domain With An Ordered Neck-Lin 1e-42
3l1c_A383 Kinesin-14 Protein Ncd, T436s Mutant Length = 383 1e-42
3u06_A412 Crystal Structure Of The Kinesin-14 Ncdg347d Length 2e-42
3t0q_A349 Motor Domain Structure Of The Kar3-Like Kinesin Fro 2e-42
1f9v_A347 Crystal Structures Of Mutants Reveal A Signalling P 9e-42
1f9u_A347 Crystal Structures Of Mutants Reveal A Signalling P 1e-41
4gkr_A371 Structure Of The C-Terminal Motor Domain Of Kar3 Fr 1e-41
3kar_A346 The Motor Domain Of Kinesin-Like Protein Kar3, A Sa 3e-41
2y5w_A365 Crystal Structure Of Drosophila Melanogaster Kinesi 6e-41
1f9w_A347 Crystal Structures Of Mutants Reveal A Signalling P 9e-41
1goj_A355 Structure Of A Fast Kinesin: Implications For Atpas 2e-39
3b6u_A372 Crystal Structure Of The Motor Domain Of Human Kine 4e-38
2wbe_C373 Kinesin-5-Tubulin Complex With Amppnp Length = 373 8e-38
2vvg_A350 Crystal Structure Of The G.Intestinalis Kinesin 2 G 2e-36
4h1g_A715 Structure Of Candida Albicans Kar3 Motor Domain Fus 9e-35
3gbj_A354 Crystal Structure Of The Motor Domain Of Kinesin Ki 4e-34
3hqd_A369 Human Kinesin Eg5 Motor Domain In Complex With Ampp 1e-33
1q0b_A367 Crystal Structure Of The Motor Protein Ksp In Compl 1e-33
4a1z_A368 Eg5-1 Length = 368 1e-33
4ap0_A370 The Mitotic Kinesin Eg5 In Complex With Mg-Adp And 1e-33
1ii6_A368 Crystal Structure Of The Mitotic Kinesin Eg5 In Com 1e-33
1x88_A359 Human Eg5 Motor Domain Bound To Mg-Adp And Monastro 1e-33
4a28_A368 Eg5-2 Length = 368 1e-33
4aqv_C373 Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma 2e-33
3zcw_A348 Eg5 - New Allosteric Binding Site Length = 348 2e-33
1i5s_A367 Crystal Structure Of The Kif1a Motor Domain Complex 3e-33
1ia0_K394 Kif1a Head-Microtubule Complex Structure In Atp-For 4e-33
1i6i_A366 Crystal Structure Of The Kif1a Motor Domain Complex 4e-33
1vfv_A366 Crystal Structure Of The Kif1a Motor Domain Complex 7e-33
3b6v_A395 Crystal Structure Of The Motor Domain Of Human Kine 1e-31
4a14_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 2e-31
3bfn_A388 Crystal Structure Of The Motor Domain Of Human Kine 4e-31
2owm_A443 Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 2e-30
2xt3_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 9e-30
3lre_A355 Crystal Structure Analysis Of Human Kinesin-8 Motor 1e-28
3nwn_A359 Crystal Structure Of The Human Kif9 Motor Domain In 3e-25
2kin_A238 Kinesin (Monomeric) From Rattus Norvegicus Length = 2e-24
1t5c_A349 Crystal Structure Of The Motor Domain Of Human Kine 2e-24
1v8j_A410 The Crystal Structure Of The Minimal Functional Dom 2e-24
2heh_A387 Crystal Structure Of The Kif2c Motor Domain (Casp T 3e-24
3edl_D331 Kinesin13-Microtubule Ring Complex Length = 331 9e-24
1ry6_A360 Crystal Structure Of Internal Kinesin Motor Domain 2e-21
2gry_A420 Crystal Structure Of The Human Kif2 Motor Domain In 1e-20
3dc4_A344 Crystal Structure Of The Drosophila Kinesin Family 4e-20
3pxn_A344 Crystal Structure Of The Drosophila Kinesin Family 1e-19
3kin_B117 Kinesin (Dimeric) From Rattus Norvegicus Length = 1 1e-08
2kin_B100 Kinesin (Monomeric) From Rattus Norvegicus Length = 1e-07
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 Back     alignment and structure 
Iteration: 1

 Score =  197 bits (500), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 195/345 (56%), Gaps = 25/345 (7%)
Query: 132 KKRLFNDLLTAKGNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKKD 187
           +KR +N +   KG I+V+CR RPL E E       ++   D+ T+     DD     +K 
Sbjct: 1   RKRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDD----KRKQ 56
Query: 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYA 247
             +DRV+     Q ++F D +  VQSA+DGYNV IFAYGQT SGKT T+ G   + GL  
Sbjct: 57  HIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTP 116
Query: 248 RCFEELFDLSNSDTTATARFNFAVTVF--ELYNEQLRELL-PQTGNGLAKIRLQSLESSI 304
           R  +ELF++   D+    RF+F++  +  ELY + L +LL P++   L K+ ++     +
Sbjct: 117 RATKELFNILKRDS---KRFSFSLKAYMVELYQDTLVDLLLPKSARRL-KLEIKKDSKGM 172
Query: 305 ELVQEKVDNPLEFSKVLKSAFQSRGND---VSKFNV------SHLIIMIHIYYNNLITGE 355
             V+     P+   + L+   + RG++   VS  N+      SHLI+ + I   +L T  
Sbjct: 173 VFVENVTTIPISTLEELRMILE-RGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQS 231
Query: 356 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSM 415
               KLS VDLAGSE +     +G ++ +   + KSLSALGDV+ +L+S    +PY N  
Sbjct: 232 AARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHK 291
Query: 416 LTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV 460
           LT +++DSLG ++KTLM VN+ P  +N+ ET +SL ++SR R+ V
Sbjct: 292 LTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIV 336
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 Back     alignment and structure
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 Back     alignment and structure
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 Back     alignment and structure
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 Back     alignment and structure
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 Back     alignment and structure
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 Back     alignment and structure
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 Back     alignment and structure
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 Back     alignment and structure
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 Back     alignment and structure
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 Back     alignment and structure
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 Back     alignment and structure
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 Back     alignment and structure
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 Back     alignment and structure
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 Back     alignment and structure
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 Back     alignment and structure
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 Back     alignment and structure
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 Back     alignment and structure
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 Back     alignment and structure
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 Back     alignment and structure
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 Back     alignment and structure
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 Back     alignment and structure
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 Back     alignment and structure
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 Back     alignment and structure
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 Back     alignment and structure
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 Back     alignment and structure
>pdb|4A1Z|A Chain A, Eg5-1 Length = 368 Back     alignment and structure
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 Back     alignment and structure
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 Back     alignment and structure
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 Back     alignment and structure
>pdb|4A28|A Chain A, Eg5-2 Length = 368 Back     alignment and structure
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 Back     alignment and structure
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 Back     alignment and structure
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 Back     alignment and structure
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 Back     alignment and structure
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 Back     alignment and structure
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 Back     alignment and structure
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 Back     alignment and structure
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 Back     alignment and structure
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 Back     alignment and structure
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 Back     alignment and structure
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 Back     alignment and structure
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 Back     alignment and structure
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 Back     alignment and structure
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 Back     alignment and structure
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 Back     alignment and structure
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 Back     alignment and structure
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 Back     alignment and structure
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 Back     alignment and structure
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 Back     alignment and structure
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 Back     alignment and structure
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 Back     alignment and structure
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1191
3u06_A412 Protein claret segregational; motor domain, stalk 1e-107
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 1e-106
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 1e-103
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 1e-103
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 1e-100
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 1e-100
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 2e-98
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 5e-83
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 3e-80
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 8e-78
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 8e-78
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 1e-77
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 2e-76
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 5e-75
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 3e-73
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 3e-72
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 1e-71
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 2e-71
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 2e-71
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 3e-71
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 1e-69
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 4e-69
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 8e-69
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 4e-68
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 2e-67
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 8e-66
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 1e-22
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 6e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-04
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 3e-04
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 Back     alignment and structure
 Score =  341 bits (878), Expect = e-107
 Identities = 114/409 (27%), Positives = 194/409 (47%), Gaps = 40/409 (9%)

Query: 68  LKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARISP 127
           +      +  + + LRQ   +L   +  +   +        ++  + +            
Sbjct: 1   MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELET----CKEQLFQSNM----------- 45

Query: 128 LINEKKRLFNDLLTAKGNIKVFCRTRPLFEDE---GPSVVEFTDDCTIRVNTGDDTISN- 183
              E+K L N ++  + NI+VFCR RP  E E         + D+ T+ + + D    + 
Sbjct: 46  ---ERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSK 102

Query: 184 -PKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD 242
             ++ F FD+V+ P   Q+++F  V P +QSALDGYN+ IFAYGQT SGKT+TM+G    
Sbjct: 103 MGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES 162

Query: 243 RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 302
            G+  R  + LFD           +    T  E+YNE L +LL    N    + ++  ++
Sbjct: 163 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL---SNEQKDMEIRMAKN 219

Query: 303 SIE------LVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYNNLI 352
           +        + +E V +P     ++ +A  +R    +  N     SH +  + +   +  
Sbjct: 220 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 279

Query: 353 TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYE 412
             E     ++LVDLAGSE       +  R+T+  ++ +SLS L +V+ +L  ++D +PY 
Sbjct: 280 KQEISVGSINLVDLAGSESP----KTSTRMTETKNINRSLSELTNVILALLQKQDHIPYR 335

Query: 413 NSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 461
           NS LT +L  SLG +SKTLM +N+ P      E++ SL F++   S  +
Sbjct: 336 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM 384
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 Back     alignment and structure
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 Back     alignment and structure
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 Back     alignment and structure
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 Back     alignment and structure
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1191
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 100.0
3u06_A412 Protein claret segregational; motor domain, stalk 100.0
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 100.0
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 100.0
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 100.0
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 100.0
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 100.0
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 100.0
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 100.0
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 100.0
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 100.0
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 100.0
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 100.0
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 100.0
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 100.0
3nwn_A359 Kinesin-like protein KIF9; motor domain, ADP, stru 100.0
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 100.0
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 100.0
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 100.0
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 100.0
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 100.0
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 100.0
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 100.0
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 100.0
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 100.0
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 100.0
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 100.0
4h1g_A715 Maltose binding protein-cakar3 motor domain fusio; 100.0
2o0a_A298 S.cerevisiae chromosome XVI reading frame ORF YPL2 99.97
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 99.91
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 99.91
4etp_B333 Spindle POLE BODY-associated protein VIK1; kinesin 98.09
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 96.57
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.52
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.06
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 95.95
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.93
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.57
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.25
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.13
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 94.54
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 94.52
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.75
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 93.62
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.6
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.16
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.13
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 93.08
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 92.46
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 92.42
2qgz_A308 Helicase loader, putative primosome component; str 90.77
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 89.83
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 89.45
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 89.08
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 88.27
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 86.55
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 86.44
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 86.43
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 84.78
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 84.44
1m1j_A491 Fibrinogen alpha subunit; coiled coils, disulfide 84.28
1m1j_B464 Fibrinogen beta chain; coiled coils, disulfide rin 83.99
3bos_A242 Putative DNA replication factor; P-loop containing 83.81
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 83.33
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 83.25
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 81.94
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 81.64
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 81.23
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 80.61
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 80.58
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=3.5e-85  Score=752.63  Aligned_cols=342  Identities=35%  Similarity=0.525  Sum_probs=284.6

Q ss_pred             HHHHHHhcChhHHHHhhhhhhcccCCCCEEEEEeeCCCCCC-CC--CceEee--cCC----cEEEEecCCCccCCCCcee
Q 001007          118 ALEAEARISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFED-EG--PSVVEF--TDD----CTIRVNTGDDTISNPKKDF  188 (1191)
Q Consensus       118 ~~e~e~r~~~~~~eRrkLhN~l~elkGnIRV~~RVRPl~~~-E~--~svV~~--~d~----~tI~v~~~~~~~~~~~k~F  188 (1191)
                      +.+.++++..+..+||+|||+++|++|||||||||||+++. |.  ..++.+  .++    ..+.+.....  ....+.|
T Consensus        33 ~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~F  110 (403)
T 4etp_A           33 MKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN--TAQVHEF  110 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSS--SCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCC--CcCceEE
Confidence            33444455566788999999999999999999999999866 32  122222  221    2344433221  1234789


Q ss_pred             ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccc
Q 001007          189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFN  268 (1191)
Q Consensus       189 ~FD~VF~p~asQeeVFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~  268 (1191)
                      +||+||+++++|++||+.|.|+|+++++|||+||||||||||||||||+|+  ++|||||++++||+.+.......+.|.
T Consensus       111 ~FD~VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~  188 (403)
T 4etp_A          111 KFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYK  188 (403)
T ss_dssp             EESEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred             EcCEEECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEE
Confidence            999999999999999999999999999999999999999999999999996  469999999999999876556678999


Q ss_pred             eeEEEEEEechhhhcccCCCCCC--------ceEEEecc---cccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC---
Q 001007          269 FAVTVFELYNEQLRELLPQTGNG--------LAKIRLQS---LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK---  334 (1191)
Q Consensus       269 V~VS~lEIYNE~V~DLL~~~~~~--------~~~i~~~~---~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~---  334 (1191)
                      |+|||+|||||+|+|||.+....        ...++.+.   ...+.+++++.|.+++++..+|..|.++|.++.|.   
T Consensus       189 v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~  268 (403)
T 4etp_A          189 VNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNE  268 (403)
T ss_dssp             EEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHH
T ss_pred             EEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCc
Confidence            99999999999999999876421        12233322   23567899999999999999999999999999885   


Q ss_pred             -CceeEEEEEEEEEEeeccCCceeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCC---ccc
Q 001007          335 -FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD---IVP  410 (1191)
Q Consensus       335 -SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~---hVP  410 (1191)
                       |||||+||+|+|.+.+...+....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+..   |||
T Consensus       269 ~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiP  348 (403)
T 4etp_A          269 HSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIP  348 (403)
T ss_dssp             HHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCC
T ss_pred             ccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCC
Confidence             8999999999999998888888899999999999999999999999999999999999999999999987554   999


Q ss_pred             CCCCccccccccccCCCcceEEEEEeCCCCCCHHHHHHHhHHHHHHhhccccc
Q 001007          411 YENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL  463 (1191)
Q Consensus       411 YRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~eETLsTLrFAsRAr~I~~~~  463 (1191)
                      |||||||+||||+|||||+|+||+||||+..+++||++||+||+|+++|.+++
T Consensus       349 yRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~  401 (403)
T 4etp_A          349 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS  401 (403)
T ss_dssp             GGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC----
T ss_pred             cccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCC
Confidence            99999999999999999999999999999999999999999999999987653
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Back     alignment and structure
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Back     alignment and structure
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Back     alignment and structure
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Back     alignment and structure
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Back     alignment and structure
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Back     alignment and structure
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} Back     alignment and structure
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Back     alignment and structure
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A Back     alignment and structure
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1191
d2ncda_368 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 3e-69
d1bg2a_323 c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId 1e-64
d1x88a1345 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), 1e-59
d1sdma_364 c.37.1.9 (A:) Kinesin heavy chain-like protein {Po 1e-58
d1ry6a_330 c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu 5e-58
d1v8ka_362 c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c 2e-57
d1f9va_342 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 2e-57
d2zfia1349 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), 8e-57
d1goja_354 c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 1e-56
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  234 bits (598), Expect = 3e-69
 Identities = 117/362 (32%), Positives = 184/362 (50%), Gaps = 19/362 (5%)

Query: 112 RKLDQVALEAEARISPLI---NEKKRLFNDLLTAKGNIKVFCRTRPLFEDE---GPSVVE 165
           R  +Q A E E     L     E+K L N ++  +GNI+VFCR RP  E E         
Sbjct: 10  RCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWT 69

Query: 166 FTDDCTIRVNTGDDTISN--PKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIF 223
           + D+ T+ + + D    +   ++ F FD+V+ P   Q+++F  V P +QSALDGYN+ IF
Sbjct: 70  YHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIF 129

Query: 224 AYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRE 283
           AYGQT SGKT+TM+G     G+  R  + LFD           +    T  E+YNE L +
Sbjct: 130 AYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYD 189

Query: 284 LLPQTGNGLAKIRLQSLESSIELV---QEKVDNPLEFSKVLKSAFQSRGNDVSKFN---- 336
           LL      +     ++ ++ I +    +E V +P     ++ +A  +R    +  N    
Sbjct: 190 LLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSS 249

Query: 337 VSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALG 396
            SH +  + +   +    E     ++LVDLAGSE       +  R+T+  ++ +SLS L 
Sbjct: 250 RSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELT 305

Query: 397 DVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRA 456
           +V+ +L  ++D +PY NS LT +L  SLG +SKTLM +N+ P      E++ SL F++  
Sbjct: 306 NVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 365

Query: 457 RS 458
            S
Sbjct: 366 NS 367
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 Back     information, alignment and structure
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 Back     information, alignment and structure
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1191
d2ncda_368 Kinesin motor Ncd (non-claret disjunctional) {Frui 100.0
d1sdma_364 Kinesin heavy chain-like protein {Potato (Solanum 100.0
d1v8ka_362 Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 100.0
d1f9va_342 Kinesin motor Ncd (non-claret disjunctional) {Bake 100.0
d1bg2a_323 Kinesin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1goja_354 Kinesin {Neurospora crassa [TaxId: 5141]} 100.0
d1x88a1345 Kinesin {Human (Homo sapiens), mitotic kinesin eg5 100.0
d2zfia1349 Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 100.0
d1ry6a_330 Kinesin {Malaria parasite (Plasmodium falciparum) 100.0
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 93.39
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 85.18
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 84.65
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 84.41
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 83.44
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 80.85
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 80.75
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 80.37
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=9.5e-77  Score=672.33  Aligned_cols=328  Identities=33%  Similarity=0.513  Sum_probs=281.5

Q ss_pred             hHHHHhhhhhhcccCCCCEEEEEeeCCCCCCCC---CceEeecCCcEEEEecCCCc--cCCCCceeecceeeCCCCChhh
Q 001007          128 LINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEG---PSVVEFTDDCTIRVNTGDDT--ISNPKKDFEFDRVYGPHVGQAE  202 (1191)
Q Consensus       128 ~~~eRrkLhN~l~elkGnIRV~~RVRPl~~~E~---~svV~~~d~~tI~v~~~~~~--~~~~~k~F~FD~VF~p~asQee  202 (1191)
                      ...+||+|||+|+|+||||||||||||+++.|.   ..++...++.++.+......  .....+.|.||+||+++++|++
T Consensus        29 ~~~~~~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~  108 (368)
T d2ncda_          29 SNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSD  108 (368)
T ss_dssp             HHHHHHHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETTTEEEEECSCHHHHTTTCCCEEECSEEECTTCCHHH
T ss_pred             HHHHHHHHHhHHHHhcCCEEEEEEeCCCCchhcCCCCcEEEeCCCCeEEEccCCccccCCcCceeeECCeEECCCCCccc
Confidence            345689999999999999999999999987763   23455567777777654322  1223588999999999999999


Q ss_pred             HHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCChHHHHHHHHHHhhccCcccccccceeEEEEEEechhhh
Q 001007          203 LFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLR  282 (1191)
Q Consensus       203 VFeeV~PLV~svLdGyN~~IfAYGQTGSGKTyTM~Gs~~~~GIIPRale~LF~~i~~~~~~~~~f~V~VS~lEIYNE~V~  282 (1191)
                      ||+.|.|+|+++++|||+||||||||||||||||+|++.++||+||++++||+.+......+..|.|.+||+|||||+|+
T Consensus       109 Vy~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf~~~~~~~~~~~~~~v~vS~~EIyne~i~  188 (368)
T d2ncda_         109 IFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLY  188 (368)
T ss_dssp             HHTTTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEESSSCEE
T ss_pred             hHHHHHHHHHHHhcccceeEEeeccCCCccceEecccccccchhhHHHHHHhhhhhhhccccccceEEEEEEEEecceee
Confidence            99889999999999999999999999999999999999999999999999999887666667889999999999999999


Q ss_pred             cccCCCCCCceEEEe-c--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCcCcC----CceeEEEEEEEEEEeeccCCc
Q 001007          283 ELLPQTGNGLAKIRL-Q--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE  355 (1191)
Q Consensus       283 DLL~~~~~~~~~i~~-~--~~~~v~~Lt~~~V~S~~E~~~lL~~g~~nR~~~~T~----SSRSH~IftI~V~~~n~~tg~  355 (1191)
                      |||.+.......... +  ....+.+++.+.|.+++++..++..|.++|..+.+.    |||||+||+|++...+...+.
T Consensus       189 DLL~~~~~~~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~~t~~n~~ssrSh~i~~i~v~~~~~~~~~  268 (368)
T d2ncda_         189 DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE  268 (368)
T ss_dssp             ETTCSSCCCCCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHHSCCCSSSCTTTTTTCEEEEEEEEEEECTTSCC
T ss_pred             cccccccccccceeeccccccccccccceeccCCHHHHHHHHHHHHhhcccccccccccccccceEEEEEEEEEecCCCc
Confidence            999887654332222 2  223566899999999999999999999999887764    899999999999999888888


Q ss_pred             eeeeeeeEEecCCCccccccCCcchhhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcceEEEEE
Q 001007          356 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVN  435 (1191)
Q Consensus       356 ~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsaLg~VIsALa~kk~hVPYRdSKLTrLLqDSLGGNSKTlMIv~  435 (1191)
                      ...|+|+||||||+|+..    .+.+++|+.+||+||++|++||.+|++++.|||||+||||+||+|+|||||+|+||+|
T Consensus       269 ~~~s~l~~VDLAGse~~~----~~~~~~E~~~IN~SL~aL~~vi~aL~~~~~~iPyR~SkLT~lL~dsLggns~t~mI~~  344 (368)
T d2ncda_         269 ISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFIN  344 (368)
T ss_dssp             EEEEEEEEEECCCCCCC--------------CTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGSSSSCEEEEEEE
T ss_pred             eEeeeeeeeeeccccccc----hhhhhcccccchhhHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHHhcCCCCeEEEEEE
Confidence            889999999999999864    4678999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCHHHHHHHhHHHHHHhhc
Q 001007          436 ICPNAANMSETLSSLNFSSRARST  459 (1191)
Q Consensus       436 ISPs~~~~eETLsTLrFAsRAr~I  459 (1191)
                      |||+..+++||++||+||+||+++
T Consensus       345 isp~~~~~~eTl~TL~fa~rak~~  368 (368)
T d2ncda_         345 VSPFQDCFQESVKSLRFAASVNSC  368 (368)
T ss_dssp             ECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred             ECCChhhHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999874
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure