Citrus Sinensis ID: 001019

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------119

MATSEDKQIPRVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKNFVSKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALPSIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVLGSMTA

cccccccccccEEEEEcccccEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEcccccEEEccccccccccccccccccccEEEEEEEccccccEEEEEEEEcccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHccccccEEEEEEEEcccEEEEEEEEEEccEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEEccccEEEcccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccEEEEccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccEEEcccEEEEEEEEcccccccccccccccEEEEEEcccccccccccEEEEEccccccccHHHHHHccccccEEEEEEcHHHHHHHHHcccccEEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccEEEcHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHccccccccEEEEEEEEcccccccEEEEEcccccccccEEEEEEEccccccccccccccccEEEEEcccccccEEEEEEcc

cccccccccccccEEEcccccEEEEEEEccccccEEEEEEEEEcccccEEEEEEEEccccccEEcccccccccccccccccccccEEEEEEEccHHHHEEEEEEEccccccEEEcccccEEEEccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccHHcccHHHHHHHccccccccccccHHHHHHHHHHHHccccEEEcEEEEcccEEEEEEEEccccEEEEEEEcccccEEEEEEEEcccccccccccccccccccEEEccccEcccccccccccccEEEEEEcccccEEEEEEEEEcccEEEEcccccEEEEccccccccEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHccccccccccccHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccEEEEEEEEccccccccccccccEEEEEEcccccccccccEEEEEccccccHHHHHHHHHHcccEEEEEEccHHHHHHHHHHcccEEEEEEccccEEEEEccccHHccccccccccccccEEEcccccccEEEEHHHccHHHcccHHHHHHHHHHHccccccccccEEEEHHHHHHHHHccccHHHHHHHHHHHHHccHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHEEEEEEEEcccccccEEEEEEccccccccEEEEEEEccccHEEEccccccccEEEEEcccccccEEEEcccc

matsedkqiprvhnfelvegMKLQInasgssigrnvRVQFQLRNCARTWILHWGFlyrgntnwfipaehpkqgalqtpfvksgEIYLVTIELRDPKIHAIEFILKDGihdrwlrlnhgnfrieipeidtntclqpipKDLIELRAYQnwerrgrpnnspqqqQKDYNDALKELQLQLSngislkdlqsshmtastkpvfknkeqirygvpsypcrrhdVEKWLQKnykghvktntlpssSFVALVENslgadnvisrqsyhmDHEIVVLSKIISSDYHILVAVNMKGAAILHwgiskcspgewlspppdmlpekskmVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSggswiknngenffvglhpmdpkdknfvskvdgddKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLtwnknynvkpreiSEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVgrggqgdvgqRIRDEILVIQRNngcktgmmEEWHQklhnntspddIIICEALLNYIRCGFKIDAYWQTlnchglskqklasydrpivseprfradAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKghnsvisdsfgSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGlkdlnfshppEIMFFISLLLESLClsvvnnedliyctkdwyrvsesyRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQnkvyrrptiiiasritgeeeipvGVVAVltpdmpdvlshvsirarnnkvcfatcFDQNILRNLRLKEGKAVSIRLKSTNLIISDisssnlslsssalpsiprgitfkrKIFRgkyavsvedftpdmvgakscNIKFLRervpswikiptsvaipfgafETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKmrssgmpwpgdegwnLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIhtknplsgdnsEIYTEIVKGLGetlvgaypgramsfvtkknnlkspivlgsmta

matsedkqiprvhNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFrieipeidtntclqpIPKDLIELRAYQNWErrgrpnnspqQQQKDYNDALKELQLQLSNGISLKDLQSSHMTastkpvfknkeqirYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKNFVSKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAelterckgEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKiyssqpndrEIVRLIMAFVGrggqgdvgqriRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSkqklasydrpivseprfradakesLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGtargrakdLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSqtyqkkfqpsvKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELitlqnkvyrrPTIIiasritgeeeiPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDisssnlslsssalpsiprgitfkrkiFRGKYAvsvedftpdmvgAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTknplsgdnSEIYTEIVKGLGETLVGAYPGRAMsfvtkknnlkspivlgsmta

MATSEDKQIPRVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKNFVSKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFvgrggqgdvgqrirdEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFIsllleslclsVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKstnliisdisssnlslsssalpsiPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVLGSMTA

***********VHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNW*****************************************************EQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWL************MVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKNFVSKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVS**********SLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDI*************SIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTK***************

*************NFELVEGMKLQINAS*****RNVRVQFQLRNCARTWILHWGFLYRGNTNWF****************KSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIEI***********I*KDLIELRAYQNWERR************************************************************************************************LGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVG****************GDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRF*ADA***LTRDLTMYLKTLKAVHSGADLESAIETCY********DSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVS*******AQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLK*************************************KYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVLGSM**

********IPRVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERR***********KDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKNFVSKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALPSIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVLGSMTA

**********RVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHM************************RHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKNFVSKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISS***************GITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVLGS***

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1188	2.2.26 [Sep-21-2011]
Q9STV0		1278	Alpha-glucan water dikina	yes	no	0.979	0.910	0.628	0.0
Q9AWA5		1464	Alpha-glucan water dikina	N/A	no	0.982	0.797	0.460	0.0
Q8LPT9		1475	Alpha-glucan water dikina	N/A	no	0.903	0.727	0.505	0.0
Q9SAC6		1399	Alpha-glucan water dikina	no	no	0.961	0.816	0.482	0.0
Q6ZY51		1196	Phosphoglucan, water diki	no	no	0.542	0.539	0.245	3e-33
Q2QTC2		1206	Phosphoglucan, water diki	no	no	0.364	0.359	0.265	2e-30
Q9YEC5		820	Phosphoenolpyruvate synth	no	no	0.072	0.104	0.340	3e-07
O29548		753	Probable phosphoenolpyruv	yes	no	0.143	0.225	0.231	0.0002
O57830		821	Probable phosphoenolpyruv	yes	no	0.059	0.086	0.309	0.0005
Q94A41		887	Alpha-amylase 3, chloropl	no	no	0.126	0.169	0.260	0.0007

>sp\|Q9STV0\|GWD2_ARATH Alpha-glucan water dikinase 2 OS=Arabidopsis thaliana GN=GWD2 PE=2 SV=3	Back alignment and function desciption

 Score = 1535 bits (3975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 750/1193 (62%), Positives = 936/1193 (78%), Gaps = 29/1193 (2%)

Query: 1    MATSEDKQIPRVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN 60
            MATS+ +Q      F+L+EGM+LQI  +G   G +VR +F L+NC R WILHWG +Y+GN
Sbjct: 1    MATSKSQQ------FQLIEGMELQITVTGLPNGSSVRAEFHLKNCTRAWILHWGCIYQGN 54

Query: 61   TNWFIPAEHP-KQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGN 119
             +W+IP+EH  KQGALQT FVKSG+ Y+V +ELRDP++ AIEF+LKDG H+RWLR ++GN
Sbjct: 55   NHWYIPSEHSSKQGALQTTFVKSGDAYVVILELRDPRVRAIEFVLKDGSHNRWLRQHNGN 114

Query: 120  FRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQLQLSN 179
            FR+EIP  D +     IPK LIE RA++ W+R+GRP +S ++QQ DY++A++EL  +L+ 
Sbjct: 115  FRVEIPWNDLH-AHHRIPKTLIERRAHKIWDRKGRPQSSAREQQIDYDNAVRELHAELAR 173

Query: 180  GISLKDLQSSHMTASTKPVFKNK--EQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLP 237
            GISL +LQ++    ST PV K +  E     + SY  R+HDV+KWLQK  +   ++ ++ 
Sbjct: 174  GISLDELQAN----STVPVEKEETSEPHHTMIQSYR-RKHDVQKWLQKYTEPINRSGSVK 228

Query: 238  SSSFVALVENSLGADNVISRQSYHM-DHEIVVLSKIISSDYHILVAVNMKGAAILHWGIS 296
            SS+   L + S+G +N++S++S+H+ ++EI VL + +  D  + +A NM G  +LHWG++
Sbjct: 229  SSALAELSKRSVGQENLVSQKSFHVRNYEITVLQRDVKGDCRLWIATNMAGPTVLHWGVA 288

Query: 297  KCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIW 356
            K S GEWL PPPD+LPEKSK V GACQT FTD+++   S+Q +D+NL++  FVGIQFVIW
Sbjct: 289  KSSAGEWLIPPPDVLPEKSKFVHGACQTQFTDMSSREHSYQFIDINLKRGGFVGIQFVIW 348

Query: 357  SGGSWIKNNGENFFVGLHPMDPKDKNFVSKVDGDDK--VKWLLDEISCREKEAERSLMHR 414
            SGG W+ NNG NF V L   D        K+D D+K  +KWLLDEIS REKEAERSLMHR
Sbjct: 349  SGGYWVNNNGANFVVNLKSADSTS----GKLDVDEKYVLKWLLDEISEREKEAERSLMHR 404

Query: 415  FNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQK 474
            FNIA ELTERCK EGE G I IMVWMRFMA RHLTWNKNYNVKPREISEA +RFTNL++K
Sbjct: 405  FNIATELTERCKDEGEGGCIGIMVWMRFMATRHLTWNKNYNVKPREISEALERFTNLMEK 464

Query: 475  IYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNT 534
            IY  QPN REIVRL MA VGRGGQGDVGQRIRDEILVIQRNN CK+GMMEEWHQKLHNN+
Sbjct: 465  IYLQQPNKREIVRLTMALVGRGGQGDVGQRIRDEILVIQRNNHCKSGMMEEWHQKLHNNS 524

Query: 535  SPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLT 594
            S DD+IICEALLNY+R  F+IDAYWQTL  +GL+K++LASYDRPIVSEPRFR+D+KE L 
Sbjct: 525  SADDVIICEALLNYVRSDFRIDAYWQTLQTNGLTKERLASYDRPIVSEPRFRSDSKEGLI 584

Query: 595  RDLTMYLKTLKAVHSGADLESAIETCY---KGHNSVISDSFGSLSSKLRECLTFIKAHIH 651
            RDLTMYLKTLKAVHSGADLESAI+T     KGH+     +   LS KL++ L  +K  + 
Sbjct: 585  RDLTMYLKTLKAVHSGADLESAIDTFLSPSKGHHVF---AVNGLSPKLQDLLNLVKRLVR 641

Query: 652  DESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPP 711
            +E+   L+EKLVD+RI+LHP L   R RAKDLLFLDI+L S  KTT+E+ L  LNF++PP
Sbjct: 642  EENTEPLIEKLVDARIQLHPALRAPRTRAKDLLFLDIALESCFKTTIEKRLISLNFNNPP 701

Query: 712  EIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLA 771
            EI++ I ++LE+LCLS+VNNE++I+CTKDWYRVSE+YR +D QWALQ KA+LDRLQLVLA
Sbjct: 702  EIIYVICVVLENLCLSIVNNEEIIFCTKDWYRVSEAYRPHDVQWALQTKAVLDRLQLVLA 761

Query: 772  ERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVAN 831
            +R Q Y    QP+ KYLG LL V+K+ ID FTEE++RA   AVLS L+NRF+P LRK+AN
Sbjct: 762  DRCQHYFTIIQPTAKYLGQLLRVDKHGIDVFTEEVIRAGPGAVLSTLVNRFDPSLRKIAN 821

Query: 832  LGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMP 891
            LGCWQVIS  +  GF+  VNELI +QNK Y +PT+IIAS++TGEEEIP GVVAVLTP M 
Sbjct: 822  LGCWQVISSADAYGFVVCVNELIVVQNKFYSKPTVIIASKVTGEEEIPAGVVAVLTPSMI 881

Query: 892  DVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSS 951
            DVLSHVSIRARN+K+CFATCFDQN+L NL+ KEG+A+SI  KST L+ISD ++S++S+  
Sbjct: 882  DVLSHVSIRARNSKICFATCFDQNVLSNLKSKEGRAISIHTKSTGLVISDGNNSDVSVRH 941

Query: 952  SALPSIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIP 1011
              + S+PRG+  K K F G Y +S ++FT + VG+KS NIKFLRERVPSWIKIPTS A+P
Sbjct: 942  IFISSVPRGVISKGKKFCGHYVISSKEFTDERVGSKSYNIKFLRERVPSWIKIPTSAALP 1001

Query: 1012 FGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMR 1071
            FG FE +LS++ NKD+A +IS L   +N GDL+KL+ IQEA+LQMSAP++L  EL  K+R
Sbjct: 1002 FGTFENILSDDSNKDVARRISVLKDSLNRGDLTKLKSIQEAILQMSAPMALRNELITKLR 1061

Query: 1072 SSGMPWPGDE-GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDY 1130
            S  MP+ GDE GWN +W +IKKVWASKWNERA++SC+K  L+HD +CMAVLIQE ICGDY
Sbjct: 1062 SERMPYLGDESGWNRSWVAIKKVWASKWNERAYVSCKKNKLDHDAVCMAVLIQEVICGDY 1121

Query: 1131 AFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVL 1183
            AFVIHT NP+SGD+SEIYTEIVKGLGETLVGAYPGRAMSF+TKK NLKSP V+
Sbjct: 1122 AFVIHTNNPVSGDSSEIYTEIVKGLGETLVGAYPGRAMSFITKKTNLKSPTVI 1174

Mediates the incorporation of phosphate into alpha-glucan, mostly at the C-6 position of glucose units.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 9EC: .EC: 4

>sp\|Q9AWA5\|GWD1_SOLTU Alpha-glucan water dikinase, chloroplastic OS=Solanum tuberosum GN=R1 PE=1 SV=2	Back alignment and function description

>sp\|Q8LPT9\|GWD1_CITRE Alpha-glucan water dikinase, chloroplastic OS=Citrus reticulata GN=R1 PE=2 SV=1	Back alignment and function description

>sp\|Q9SAC6\|GWD1_ARATH Alpha-glucan water dikinase 1, chloroplastic OS=Arabidopsis thaliana GN=GWD1 PE=1 SV=2	Back alignment and function description

>sp\|Q6ZY51\|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic OS=Arabidopsis thaliana GN=GWD3 PE=1 SV=1	Back alignment and function description

>sp\|Q2QTC2\|PWD_ORYSJ Phosphoglucan, water dikinase, chloroplastic OS=Oryza sativa subsp. japonica GN=GWD3 PE=3 SV=2	Back alignment and function description

>sp\|Q9YEC5\|PPSA_AERPE Phosphoenolpyruvate synthase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=ppsA PE=3 SV=2	Back alignment and function description

>sp\|O29548\|PPSA_ARCFU Probable phosphoenolpyruvate synthase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|O57830\|PPSA_PYRHO Probable phosphoenolpyruvate synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|Q94A41\|AMY3_ARATH Alpha-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=AMY3 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1188
255572858		1228	alpha-glucan water dikinase, chloroplast	0.935	0.904	0.659	0.0
28393438		1278	unknown protein [Arabidopsis thaliana]	0.979	0.910	0.629	0.0
79485345		1278	phosphoglucan, water dikinase [Arabidops	0.979	0.910	0.628	0.0
297803668		1291	ATGWD2/GWD3 [Arabidopsis lyrata subsp. l	0.984	0.905	0.621	0.0
5051787		1288	putative protein [Arabidopsis thaliana]	0.953	0.879	0.602	0.0
168001040		1341	predicted protein [Physcomitrella patens	0.978	0.867	0.474	0.0
302765535		1309	hypothetical protein SELMODRAFT_266998 [	0.951	0.863	0.474	0.0
302801007		1309	hypothetical protein SELMODRAFT_233951 [	0.951	0.863	0.470	0.0
168025388		1338	predicted protein [Physcomitrella patens	0.976	0.866	0.468	0.0
413944065		1469	hypothetical protein ZEAMMB73_267625 [Ze	0.989	0.800	0.448	0.0

>gi\|255572858\|ref\|XP_002527361.1\| alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis] gi\|223533280\|gb\|EEF35033.1\| alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1579 bits (4089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/1196 (65%), Positives = 932/1196 (77%), Gaps = 85/1196 (7%)

Query: 1    MATSEDKQIPRVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN 60
            MA+S   + PRV +F+LV+GM+ QIN SGS  GRNVR++ QL+NC RTWILHWG ++ GN
Sbjct: 1    MASS---KTPRVKHFQLVDGMQFQINVSGSLKGRNVRIELQLKNCTRTWILHWGCVFHGN 57

Query: 61   TNWFIPAEHP-----KQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRL 115
             NWFIP         KQGAL+TPF KSGE Y+V IELRDP +HAIEF+LKDG  +RW+RL
Sbjct: 58   PNWFIPTGQSSGTSYKQGALETPFTKSGEFYVVNIELRDPTLHAIEFVLKDGGSNRWMRL 117

Query: 116  NHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQL 175
            N+GNFR+++P+ D NT   P+PKDLI+ +AY  WE +GRP  +P+QQ++DY+DA++ELQ 
Sbjct: 118  NNGNFRVDLPDHDENTIHPPVPKDLIQHKAYLIWESKGRPVRTPEQQKQDYDDAVRELQN 177

Query: 176  QLSNGISLKDLQSSHMTAST--KPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYKGHVKT 233
            QL  G SL D+QSS ++AST  K +  ++EQ      SY CRRHDV+ WL K+  GH ++
Sbjct: 178  QLIRGTSLNDVQSSCISASTNTKALADSREQSSCVHSSY-CRRHDVDHWLHKHSVGHERS 236

Query: 234  NTLPSSSFVALVENSLGADNVISRQSYHM-DHEIVVLSKIISSDYHILVAVNMKGAAILH 292
              +P S+F+ LVE + G D +++ Q++H+ ++EIVVL+K+I  D H LVAVN KG  +LH
Sbjct: 237  TNMPFSAFMDLVERTTGGDKIVTGQNHHVSNYEIVVLNKVIKGDNHTLVAVNSKGTIVLH 296

Query: 293  WGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQ 352
            WG+SK SPGEWL+PP D+LPE+S ++A ACQTYFT+I+T +GSFQ               
Sbjct: 297  WGVSKLSPGEWLAPPSDILPERSTLLAYACQTYFTEISTGKGSFQ--------------- 341

Query: 353  FVIWSGGSWIKNNGENFFVGLHPMDPKDKNFVSKVDGDDK--VKWLLDEISCREKEAERS 410
                                              VDGD K  VKWLLDEI  RE EAERS
Sbjct: 342  ----------------------------------VDGDGKQIVKWLLDEIYRREIEAERS 367

Query: 411  LMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTN 470
            LM RFNIA EL ERCK EGE GLI I+VW+RFMACRHL WNKNYNVKPREISEAQD+FTN
Sbjct: 368  LMLRFNIATELMERCKFEGESGLIGILVWLRFMACRHLMWNKNYNVKPREISEAQDKFTN 427

Query: 471  LLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKL 530
            LLQKIY SQPN+REI+RLIM  VGRGGQGDVGQRIRDEILVIQRNN CKTGMMEEWHQKL
Sbjct: 428  LLQKIYLSQPNNREIMRLIMLCVGRGGQGDVGQRIRDEILVIQRNNDCKTGMMEEWHQKL 487

Query: 531  HNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAK 590
            HNN+SPDD+IICEALLNYIRCGF+ DAYWQTLN +GL+K+ LASYDRPIVSEP F   AK
Sbjct: 488  HNNSSPDDVIICEALLNYIRCGFRADAYWQTLNANGLTKEMLASYDRPIVSEPHFNTAAK 547

Query: 591  ESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHI 650
            E LTRDLT+YL+TLKAVHSGADLESAIETC        S  F     KL+E + +   + 
Sbjct: 548  EGLTRDLTLYLRTLKAVHSGADLESAIETCLGP-----SSKF-----KLKEIILYDLIY- 596

Query: 651  HDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHP 710
                     +KL++SRIEL  VL T+  RAKDLLF D++L SAI+T ME  LK L+F   
Sbjct: 597  --------FQKLLESRIELRLVLLTSSERAKDLLFFDVALDSAIRTIMESRLKHLSFDRL 648

Query: 711  PEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVL 770
             +IMF+ISL+LE+LCL+ VNNEDLI C KDWYRV ESY+ ND QWALQ KA+LDRLQL+L
Sbjct: 649  QDIMFYISLVLENLCLTTVNNEDLICCIKDWYRVRESYKANDVQWALQTKAVLDRLQLIL 708

Query: 771  AERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVA 830
            A+RS  YQKK QPS +YLG LLG+ K VID FTEEL+RA S  +LS L+NRF+PVLRKVA
Sbjct: 709  ADRSLNYQKKIQPSAQYLGKLLGIGKSVIDMFTEELIRAGSATILSTLVNRFDPVLRKVA 768

Query: 831  NLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDM 890
            +LGCWQVISPVEVCGF+T VNELIT+QN+VYR+PT+IIA+R++GEEEIP GVVAVLTPDM
Sbjct: 769  SLGCWQVISPVEVCGFVTCVNELITIQNRVYRKPTVIIANRVSGEEEIPEGVVAVLTPDM 828

Query: 891  PDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLS 950
            PD+LSHVSIRARN+KVCFATCFDQNIL+NL+LKEGKA+SI LKS NLIISDIS SNLSL+
Sbjct: 829  PDILSHVSIRARNSKVCFATCFDQNILKNLKLKEGKAISISLKSMNLIISDISGSNLSLN 888

Query: 951  SSALPSIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAI 1010
            SS   SI R +TFKRK F GKYA+SVE+FT +MVGAKSCNIKFLR++VPSWIKIP SVA+
Sbjct: 889  SSICTSIARPVTFKRKTFYGKYAISVEEFTAEMVGAKSCNIKFLRKKVPSWIKIPISVAL 948

Query: 1011 PFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKM 1070
            PFG FE VLSENINKD+ANKIS  YK +  GD +KLQ IQ A+ QMSAPLSL  ELK+KM
Sbjct: 949  PFGTFEAVLSENINKDLANKISGFYKSVLSGDFTKLQAIQGAIQQMSAPLSLTCELKSKM 1008

Query: 1071 RSSGMPWPGDEG---WNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETIC 1127
            RSS +PWPGDE    WN AW++IKKVWASKWNER  +SCRKANLNHDNL MAVLIQE IC
Sbjct: 1009 RSSRLPWPGDESEERWNHAWKAIKKVWASKWNERVHVSCRKANLNHDNLRMAVLIQEVIC 1068

Query: 1128 GDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVL 1183
            GDYAFVIHTKNPL+GD SEIY EIVKGLGETLVGAYPGRAMSF+TKK+N+  PIV+
Sbjct: 1069 GDYAFVIHTKNPLTGDASEIYIEIVKGLGETLVGAYPGRAMSFITKKSNINFPIVI 1124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|28393438\|gb\|AAO42141.1\| unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|79485345\|ref\|NP_194176.3\| phosphoglucan, water dikinase [Arabidopsis thaliana] gi\|332278206\|sp\|Q9STV0.3\|GWD2_ARATH RecName: Full=Alpha-glucan water dikinase 2; Flags: Precursor gi\|332659506\|gb\|AEE84906.1\| phosphoglucan, water dikinase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297803668\|ref\|XP_002869718.1\| ATGWD2/GWD3 [Arabidopsis lyrata subsp. lyrata] gi\|297315554\|gb\|EFH45977.1\| ATGWD2/GWD3 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|5051787\|emb\|CAB45080.1\| putative protein [Arabidopsis thaliana] gi\|7269295\|emb\|CAB79355.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|168001040\|ref\|XP_001753223.1\| predicted protein [Physcomitrella patens subsp. patens] gi\|162695509\|gb\|EDQ81852.1\| predicted protein [Physcomitrella patens subsp. patens]	Back alignment and taxonomy information

>gi\|302765535\|ref\|XP_002966188.1\| hypothetical protein SELMODRAFT_266998 [Selaginella moellendorffii] gi\|300165608\|gb\|EFJ32215.1\| hypothetical protein SELMODRAFT_266998 [Selaginella moellendorffii]	Back alignment and taxonomy information

>gi\|302801007\|ref\|XP_002982260.1\| hypothetical protein SELMODRAFT_233951 [Selaginella moellendorffii] gi\|300149852\|gb\|EFJ16505.1\| hypothetical protein SELMODRAFT_233951 [Selaginella moellendorffii]	Back alignment and taxonomy information

>gi\|168025388\|ref\|XP_001765216.1\| predicted protein [Physcomitrella patens subsp. patens] gi\|162683535\|gb\|EDQ69944.1\| predicted protein [Physcomitrella patens subsp. patens]	Back alignment and taxonomy information

>gi\|413944065\|gb\|AFW76714.1\| hypothetical protein ZEAMMB73_267625 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1188
TAIR\|locus:2136027		1278	PWD "phosphoglucan, water diki	0.979	0.910	0.603	0.0
TAIR\|locus:2019953		1399	SEX1 "STARCH EXCESS 1" [Arabid	0.849	0.721	0.479	2.7e-277
TAIR\|locus:2151089		1196	PWD "PHOSPHOGLUCAN WATER DIKIN	0.168	0.167	0.280	1.7e-27
TAIR\|locus:2196759		887	AMY3 "alpha-amylase-like 3" [A	0.097	0.130	0.285	4.8e-05

TAIR\|locus:2136027 PWD "phosphoglucan, water dikinase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3695 (1305.8 bits), Expect = 0., P = 0.
 Identities = 720/1193 (60%), Positives = 896/1193 (75%)

Query:     1 MATSEDKQIPRVHNFELVEGMKLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN 60
             MATS+ +Q      F+L+EGM+LQI  +G   G +VR +F L+NC R WILHWG +Y+GN
Sbjct:     1 MATSKSQQ------FQLIEGMELQITVTGLPNGSSVRAEFHLKNCTRAWILHWGCIYQGN 54

Query:    61 TNWFIPAEHP-KQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGN 119
              +W+IP+EH  KQGALQT FVKSG+ Y+V +ELRDP++ AIEF+LKDG H+RWLR ++GN
Sbjct:    55 NHWYIPSEHSSKQGALQTTFVKSGDAYVVILELRDPRVRAIEFVLKDGSHNRWLRQHNGN 114

Query:   120 FRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQLQLSN 179
             FR+EIP  D +   + IPK LIE RA++ W+R+GRP +S ++QQ DY++A++EL  +L+ 
Sbjct:   115 FRVEIPWNDLHAHHR-IPKTLIERRAHKIWDRKGRPQSSAREQQIDYDNAVRELHAELAR 173

Query:   180 GISLKDLQSSHMTASTKPVFKNK--EQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLP 237
             GISL +LQ++    ST PV K +  E     + SY  R+HDV+KWLQK  +   ++ ++ 
Sbjct:   174 GISLDELQAN----STVPVEKEETSEPHHTMIQSYR-RKHDVQKWLQKYTEPINRSGSVK 228

Query:   238 SSSFVALVENSLGADNVISRQSYHM-DHEIVVLSKIISSDYHILVAVNMKGAAILHWGIS 296
             SS+   L + S+G +N++S++S+H+ ++EI VL + +  D  + +A NM G  +LHWG++
Sbjct:   229 SSALAELSKRSVGQENLVSQKSFHVRNYEITVLQRDVKGDCRLWIATNMAGPTVLHWGVA 288

Query:   297 KCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIW 356
             K S GEWL PPPD+LPEKSK V GACQT FTD+++   S+Q +D+NL++  FVGIQFVIW
Sbjct:   289 KSSAGEWLIPPPDVLPEKSKFVHGACQTQFTDMSSREHSYQFIDINLKRGGFVGIQFVIW 348

Query:   357 SGGSWIKNNGENFFVGLHPMDPKDKNFVSKVDGDDK--VKWLLDEISCREKEAERSLMHR 414
             SGG W+ NNG NF V L   D        K+D D+K  +KWLLDEIS REKEAERSLMHR
Sbjct:   349 SGGYWVNNNGANFVVNLKSADSTS----GKLDVDEKYVLKWLLDEISEREKEAERSLMHR 404

Query:   415 FNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQK 474
             FNIA ELTERCK EGE G I IMVWMRFMA RHLTWNKNYNVKPREISEA +RFTNL++K
Sbjct:   405 FNIATELTERCKDEGEGGCIGIMVWMRFMATRHLTWNKNYNVKPREISEALERFTNLMEK 464

Query:   475 IYSSQPNDREIVRLIMAFXXXXXXXXXXXXXXXEILVIQRNNGCKTGMMEEWHQKLHNNT 534
             IY  QPN REIVRL MA                EILVIQRNN CK+GMMEEWHQKLHNN+
Sbjct:   465 IYLQQPNKREIVRLTMALVGRGGQGDVGQRIRDEILVIQRNNHCKSGMMEEWHQKLHNNS 524

Query:   535 SPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLT 594
             S DD+IICEALLNY+R  F+IDAYWQTL  +GL+K++LASYDRPIVSEPRFR+D+KE L 
Sbjct:   525 SADDVIICEALLNYVRSDFRIDAYWQTLQTNGLTKERLASYDRPIVSEPRFRSDSKEGLI 584

Query:   595 RDLTMYLKTLKAVHSGADLESAIETCY---KGHNSVISDSFGSLSSKLRECLTFIKAHIH 651
             RDLTMYLKTLKAVHSGADLESAI+T     KGH+     +   LS KL++ L  +K  + 
Sbjct:   585 RDLTMYLKTLKAVHSGADLESAIDTFLSPSKGHHVF---AVNGLSPKLQDLLNLVKRLVR 641

Query:   652 DESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPP 711
             +E+   L+EKLVD+RI+LHP L   R RAKDLLFLDI+L S  KTT+E+ L  LNF++PP
Sbjct:   642 EENTEPLIEKLVDARIQLHPALRAPRTRAKDLLFLDIALESCFKTTIEKRLISLNFNNPP 701

Query:   712 EIMFFIXXXXXXXXXXVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLA 771
             EI++ I          +VNNE++I+CTKDWYRVSE+YR +D QWALQ KA+LDRLQLVLA
Sbjct:   702 EIIYVICVVLENLCLSIVNNEEIIFCTKDWYRVSEAYRPHDVQWALQTKAVLDRLQLVLA 761

Query:   772 ERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVAN 831
             +R Q Y    QP+ KYLG LL V+K+ ID FTEE++RA   AVLS L+NRF+P LRK+AN
Sbjct:   762 DRCQHYFTIIQPTAKYLGQLLRVDKHGIDVFTEEVIRAGPGAVLSTLVNRFDPSLRKIAN 821

Query:   832 LGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMP 891
             LGCWQVIS  +  GF+  VNELI +QNK Y +PT+IIAS++TGEEEIP GVVAVLTP M 
Sbjct:   822 LGCWQVISSADAYGFVVCVNELIVVQNKFYSKPTVIIASKVTGEEEIPAGVVAVLTPSMI 881

Query:   892 DVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKXXXXXXXXXXXXXXXXXX 951
             DVLSHVSIRARN+K+CFATCFDQN+L NL+ KEG+A+SI  K                  
Sbjct:   882 DVLSHVSIRARNSKICFATCFDQNVLSNLKSKEGRAISIHTKSTGLVISDGNNSDVSVRH 941

Query:   952 XXXXXXPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIP 1011
                   PRG+  K K F G Y +S ++FT + VG+KS NIKFLRERVPSWIKIPTS A+P
Sbjct:   942 IFISSVPRGVISKGKKFCGHYVISSKEFTDERVGSKSYNIKFLRERVPSWIKIPTSAALP 1001

Query:  1012 FGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMR 1071
             FG FE +LS++ NKD+A +IS L   +N GDL+KL+ IQEA+LQMSAP++L  EL  K+R
Sbjct:  1002 FGTFENILSDDSNKDVARRISVLKDSLNRGDLTKLKSIQEAILQMSAPMALRNELITKLR 1061

Query:  1072 SSGMPWPGDE-GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDY 1130
             S  MP+ GDE GWN +W +IKKVWASKWNERA++SC+K  L+HD +CMAVLIQE ICGDY
Sbjct:  1062 SERMPYLGDESGWNRSWVAIKKVWASKWNERAYVSCKKNKLDHDAVCMAVLIQEVICGDY 1121

Query:  1131 AFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVL 1183
             AFVIHT NP+SGD+SEIYTEIVKGLGETLVGAYPGRAMSF+TKK NLKSP V+
Sbjct:  1122 AFVIHTNNPVSGDSSEIYTEIVKGLGETLVGAYPGRAMSFITKKTNLKSPTVI 1174

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR\|locus:2019953 SEX1 "STARCH EXCESS 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2151089 PWD "PHOSPHOGLUCAN WATER DIKINASE" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2196759 AMY3 "alpha-amylase-like 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9STV0	GWD2_ARATH	2, ., 7, ., 9, ., 4	0.6286	0.9797	0.9107	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.9.4	0.946
3rd Layer	2.7.9	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PWD	PWD (PHOSPHOGLUCAN, WATER DIKINASE); ATP binding / kinase; PHOSPHOGLUCAN, WATER DIKINASE (PWD); FUNCTIONS IN- kinase activity, ATP binding; INVOLVED IN- phosphorylation; LOCATED IN- chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro-IPR002192); BEST Arabidopsis thaliana protein match is- SEX1 (STARCH EXCESS 1); alpha-glucan, water dikinase (TAIR-AT1G10760.1); Has 968 Blast hits to 950 proteins in 384 species- Archae - 116; Bacteria - 652; Metazoa - 0; Fungi [...] (1278 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	SEX4	SEX4 (STARCH-EXCESS 4); polysaccharide binding / protein tyrosine/serine/threonine phosphatase; [...] (379 aa)	•	0.925
	DPE1	DPE1 (DISPROPORTIONATING ENZYME); 4-alpha-glucanotransferase/ catalytic/ cation binding; Encode [...] (576 aa)	•	0.921
	ISA3	ISA3 (ISOAMYLASE 3); alpha-amylase/ isoamylase; Encodes an isoamylase-like protein. Mutant stud [...] (764 aa)	•	0.919
	RCP1	RCP1 (ROOT CAP 1); maltose transmembrane transporter; Encodes a maltose transporter that is exp [...] (415 aa)	•	0.867
	AT3G29320	glucan phosphorylase, putative; Encodes a plastidic alpha-glucan phosphorylase. In vitro, the e [...] (962 aa)	•	0.829
	PHS2	PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2); phosphorylase/ transferase, transferring glycosyl groups; [...] (841 aa)	•	0.827
	ATLDA	ATLDA (LIMIT DEXTRINASE); alpha-amylase/ limit dextrinase/ pullulanase; Encodes an enzyme thoug [...] (965 aa)	•	0.823
	BAM4	BAM4 (BETA-AMYLASE 4); beta-amylase/ catalytic/ cation binding; In vitro assay indicates no bet [...] (531 aa)	•	0.819
	ADG1	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1); glucose-1-phosphate adenylyltransferase; Encodes the sm [...] (520 aa)	•	0.790
	AMY1	AMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase; Predicted to be secreted protein based on signalP pre [...] (423 aa)	•	0.790

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1188
pfam01326		324	pfam01326, PPDK_N, Pyruvate phosphate dikinase, PE	2e-20
PLN02784		894	PLN02784, PLN02784, alpha-amylase	3e-11
TIGR01418		782	TIGR01418, PEP_synth, phosphoenolpyruvate synthase	1e-09
PRK06241		871	PRK06241, PRK06241, phosphoenolpyruvate synthase;	4e-09
PLN02784		894	PLN02784, PLN02784, alpha-amylase	1e-07
COG0574		740	COG0574, PpsA, Phosphoenolpyruvate synthase/pyruva	9e-07
PRK06464		795	PRK06464, PRK06464, phosphoenolpyruvate synthase;	9e-05
PLN02784		894	PLN02784, PLN02784, alpha-amylase	0.002

>gnl\|CDD\|216434 pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain	Back alignment and domain information

 Score = 93.3 bits (232), Expect = 2e-20
 Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 29/208 (13%)

Query: 980  TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFIN 1039
              D+VG K+ N+  L       + +P    I   AF   L EN  ++    + R     +
Sbjct: 3    DVDLVGGKAANLAELARAG---LPVPPGFVITTEAFRRFLEENGLREEILSLLRPLLLSD 59

Query: 1040 GGDLSKL-QEIQEAVLQMSAPLSLIYELKNK-----------MRSS-------GMPWPGD 1080
               L      I+E +L    P  L+  L              +RSS          + G 
Sbjct: 60   RSSLDAASPGIRELILNAPLPDELVEALAAALDELGADAPVAVRSSATAEDLPEASFAGQ 119

Query: 1081 -------EGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFV 1133
                    G      +IK VWAS ++ RA    +   ++ + + MAV++Q  +  D + V
Sbjct: 120  YDTYLNVNGLEQLLDAIKAVWASLFSPRALAYRQARGIDDEEVGMAVVVQPMVDADASGV 179

Query: 1134 IHTKNPLSGDNSEIYTEIVKGLGETLVG 1161
              T++P +GD   +  E V GLGE +V 
Sbjct: 180  AFTRDPSTGDRDLVVIEAVWGLGEAVVS 207

This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP). Length = 324

>gnl\|CDD\|215419 PLN02784, PLN02784, alpha-amylase	Back alignment and domain information

>gnl\|CDD\|233405 TIGR01418, PEP_synth, phosphoenolpyruvate synthase	Back alignment and domain information

>gnl\|CDD\|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|215419 PLN02784, PLN02784, alpha-amylase	Back alignment and domain information

>gnl\|CDD\|223647 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|235809 PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|215419 PLN02784, PLN02784, alpha-amylase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1188
PLN02784		894	alpha-amylase	100.0
PRK06464		795	phosphoenolpyruvate synthase; Validated	100.0
PRK06241		871	phosphoenolpyruvate synthase; Validated	100.0
TIGR01418		782	PEP_synth phosphoenolpyruvate synthase. Also calle	100.0
PF01326		327	PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate	100.0
COG0574		740	PpsA Phosphoenolpyruvate synthase/pyruvate phospha	99.96
PRK05878		530	pyruvate phosphate dikinase; Provisional	99.96
TIGR01828		856	pyru_phos_dikin pyruvate, phosphate dikinase. This	99.93
PLN02784		894	alpha-amylase	99.92
PRK09279		879	pyruvate phosphate dikinase; Provisional	99.88
PRK05849		783	hypothetical protein; Provisional	99.68
PLN02316		1036	synthase/transferase	97.39
PRK05849		783	hypothetical protein; Provisional	96.67
PRK08296		603	hypothetical protein; Provisional	95.84
PF00391		80	PEP-utilizers: PEP-utilising enzyme, mobile domain	95.8
PRK06241		871	phosphoenolpyruvate synthase; Validated	95.53
PLN02316		1036	synthase/transferase	95.31
PF03423		87	CBM_25: Carbohydrate binding domain (family 25); I	94.94
PRK06354		590	pyruvate kinase; Provisional	93.74
PRK05878		530	pyruvate phosphate dikinase; Provisional	93.52
TIGR01418		782	PEP_synth phosphoenolpyruvate synthase. Also calle	93.5
PRK05865		854	hypothetical protein; Provisional	93.46
PRK06464		795	phosphoenolpyruvate synthase; Validated	92.85
PRK09279		879	pyruvate phosphate dikinase; Provisional	92.66
PRK11377		473	dihydroxyacetone kinase subunit M; Provisional	92.35
PF03423		87	CBM_25: Carbohydrate binding domain (family 25); I	91.81
TIGR01828		856	pyru_phos_dikin pyruvate, phosphate dikinase. This	91.39
PRK11177		575	phosphoenolpyruvate-protein phosphotransferase; Pr	88.45
COG3848		111	Phosphohistidine swiveling domain [Signal transduc	87.72
TIGR01417		565	PTS_I_fam phosphoenolpyruvate-protein phosphotrans	87.4
PRK11061		748	fused phosphoenolpyruvate-protein phosphotransfera	86.15
COG1080		574	PtsA Phosphoenolpyruvate-protein kinase (PTS syste	86.01
PRK03955		131	hypothetical protein; Reviewed	80.75
PF11154		40	DUF2934: Protein of unknown function (DUF2934); In	80.25

>PLN02784 alpha-amylase	Back alignment and domain information

Probab=100.00  E-value=4.8e-51  Score=494.13  Aligned_cols=294  Identities=25%  Similarity=0.474  Sum_probs=245.5

Q ss_pred             ceeeeeecce----eEEEeecCCCCCceEEEEEEEeecCCceEEEeeeeecCC--CccccCCC--CC------CCccccc
Q 001019           12 VHNFELVEGM----KLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN--TNWFIPAE--HP------KQGALQT   77 (1188)
Q Consensus        12 ~~~~~~~~~~----~~~~~~~~~~~g~~~~v~~~~~n~~~~l~lHWGv~~~~~--~~W~~P~~--~P------k~~A~~T   77 (1188)
                      ...|.|....    ++-|-|. ..++.+.+|.+.+. .+++|+|||||++.++  +||.+||+  +|      |++||||
T Consensus        79 kk~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~-~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~~A~eT  156 (894)
T PLN02784         79 KETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCS-IPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKDYAIET  156 (894)
T ss_pred             eeeeeecccceecceeEEEEE-ccCCCcEEEEEEec-CCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecCeEEec
Confidence            3467765554    2334443 67788999999866 7788999999999885  89999999  45      8999999


Q ss_pred             ccccc--cc-cEEEEEEec-CCcceeEEEEEEeccccccccccCCcccccCCCCCCCCCCCCCchhhhhhhHhhhhccCC
Q 001019           78 PFVKS--GE-IYLVTIELR-DPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRG  153 (1188)
Q Consensus        78 pf~~~--g~-~~~v~ie~~-d~~i~ai~Fvl~de~~~~W~k~~g~nf~v~l~~~~~~~~~~~~p~~li~~~ay~~We~~g  153 (1188)
                      ||+++  |+ .+.|+|||+ ++++.||+||||+|++|+|||++|+||+|+|++......+.     +..-+.+-.|++  
T Consensus       157 ~f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~~-----~~~~~~~~~~~~--  229 (894)
T PLN02784        157 PLKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGNN-----VGAKKGFGIWPG--  229 (894)
T ss_pred             cccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccce-----eehhhhcCcCcC--
Confidence            99996  44 788889998 99999999999999999999999999999999977666652     444788999999  


Q ss_pred             CCCCChhhhhHHHHHHHHHHHHHhhcCCChHHHHhhhcCCCCCCCCCChhhhccCCCC--CCCccCCHHHHHhhhcc--C
Q 001019          154 RPNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPS--YPCRRHDVEKWLQKNYK--G  229 (1188)
Q Consensus       154 kp~~~~e~~~~e~~~A~~~l~~el~~g~sl~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~d~~~~~~k~~~--~  229 (1188)
                                                  .|.++...+.++++.   .+++|..+..+.  .+.++.     |++||+  |
T Consensus       230 ----------------------------~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  273 (894)
T PLN02784        230 ----------------------------ALGQLSNILLKDEGS---PSKEQDKSSSELDSAAERKG-----LKGFYEEMP  273 (894)
T ss_pred             ----------------------------ccccccchhccCCCC---CcccCCCccccccccccccc-----chhhhhccc
Confidence                                        888888888887752   233343222222  233333     788999  8


Q ss_pred             ccccCCCCchhHHHHHHhhcCCCcceeeeeeecceEEEEEEEee--CcceEEEEEecCCCCeEEEeeeecCCCCcccCCC
Q 001019          230 HVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKII--SSDYHILVAVNMKGAAILHWGISKCSPGEWLSPP  307 (1188)
Q Consensus       230 ~~~~~~~p~~~~~~~~~~~~~~~~v~~~k~f~~~~el~V~v~~~--~gk~~V~v~td~~~~lvLHWGv~~~~~~eW~~PP  307 (1188)
                      +.|+  +.++                        +.+.|+|+++  ++|++|+|+||+|++|||||||||++++||++||
T Consensus       274 ~~k~--~~~~------------------------~~~~v~v~~~~~~~k~~v~v~td~~~~vvlHWgV~k~~~~eW~~Pp  327 (894)
T PLN02784        274 IVKR--VAVD------------------------NSVTVTVRKCPETAKNLVYLETDLPGDVVVHWGVCKDGAKTWEIPP  327 (894)
T ss_pred             eeeE--EEec------------------------ceEEEEEecCCCCCceEEEEEcCCCCCEEEEeEeccCCCCcccCCC
Confidence            8777  4455                        8899999984  7899999999999999999999999899999999


Q ss_pred             CCCCCCccccccceeeeeeecccCCCceeeEEEEEccCCceeEEEEEEec-CCcccccCCcceEEecCCCCCc
Q 001019          308 PDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWS-GGSWIKNNGENFFVGLHPMDPK  379 (1188)
Q Consensus       308 ~~~~P~~S~~~~~A~eT~f~~~~~~~~~~~~lei~l~~d~~~gi~FVLk~-~~~W~kn~G~DF~Vpl~~~~~~  379 (1188)
                      ++++|+||++++|||||||++.+++.++++.++|   ++.|.||+||||+ +|+||||+|+||||||+..++.
T Consensus       328 ~~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~l---d~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~~  397 (894)
T PLN02784        328 EPHPPETSLFKNKALQTMLQQKDDGNGSSGLFSL---DGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSSL  397 (894)
T ss_pred             CCCCCCcceecccccccccccccCCCcceEEEec---CCCeeEEEEEEECCCCchhhcCCccEEEeCCchhcc
Confidence            9999999999999999999999998888988777   7899999999999 7999999999999999987544

>PRK06464 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>PRK06241 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>TIGR01418 PEP_synth phosphoenolpyruvate synthase	Back alignment and domain information

>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []	Back alignment and domain information

>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK05878 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase	Back alignment and domain information

>PLN02784 alpha-amylase	Back alignment and domain information

>PRK09279 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>PRK05849 hypothetical protein; Provisional	Back alignment and domain information

>PLN02316 synthase/transferase	Back alignment and domain information

>PRK05849 hypothetical protein; Provisional	Back alignment and domain information

>PRK08296 hypothetical protein; Provisional	Back alignment and domain information

>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]	Back alignment and domain information

>PRK06241 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>PLN02316 synthase/transferase	Back alignment and domain information

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity	Back alignment and domain information

>PRK06354 pyruvate kinase; Provisional	Back alignment and domain information

>PRK05878 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>TIGR01418 PEP_synth phosphoenolpyruvate synthase	Back alignment and domain information

>PRK05865 hypothetical protein; Provisional	Back alignment and domain information

>PRK06464 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>PRK09279 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>PRK11377 dihydroxyacetone kinase subunit M; Provisional	Back alignment and domain information

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity	Back alignment and domain information

>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase	Back alignment and domain information

>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional	Back alignment and domain information

>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]	Back alignment and domain information

>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase	Back alignment and domain information

>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional	Back alignment and domain information

>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK03955 hypothetical protein; Reviewed	Back alignment and domain information

>PF11154 DUF2934: Protein of unknown function (DUF2934); InterPro: IPR021327 This bacterial family of proteins has no known function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1188
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2ols_A		794	Phosphoenolpyruvate synthase; MC structural genomi	6e-14

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 89.9 bits (222), Expect = 3e-18
 Identities = 97/697 (13%), Positives = 196/697 (28%), Gaps = 232/697 (33%)

Query: 161 QQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKE--QIRYGVP-------- 210
           + Q  Y D L   +        + +     +    K +   +E   I             
Sbjct: 13  EHQYQYKDILSVFEDAF-----VDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTLR 66

Query: 211 ------SYPCRRHD--VEKWLQKNY-------KGHVKTNTLPSSSFVALVENSLGADNV- 254
                 S         VE+ L+ NY       K   +  ++ +  ++    + L  DN  
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQV 125

Query: 255 -----ISRQSYHMDHEI-VVLSKIISSDYHILVAVN-MKGAAILHWGISKCSPGEWLSPP 307
                +SR       ++   L ++  +     V ++ + G+     G             
Sbjct: 126 FAKYNVSRL--QPYLKLRQALLELRPAKN---VLIDGVLGS-----G------------- 162

Query: 308 PDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIK---- 363
                 K+ +    C                    +Q +    I F       W+     
Sbjct: 163 ------KTWVALDVCL----------------SYKVQCKMDFKI-F-------WLNLKNC 192

Query: 364 -------NNGENFFVGLHPMDPKDKNFVSKVDGDDKVKWLLDEISCREKEAERSLMHRFN 416
                     +     +      D N+ S+ D    +K  +  I    +   R L+    
Sbjct: 193 NSPETVLEMLQKLLYQI------DPNWTSRSDHSSNIKLRIHSI----QAELRRLLKS-- 240

Query: 417 IAAELTERCKGEGELGLIAIM--VWMR-----F-MACRHL--TWNKN-------YNVKPR 459
              +  E C       L+ ++  V        F ++C+ L  T  K              
Sbjct: 241 ---KPYENC-------LL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 460 EISEAQDRFT-----NLLQKIYSSQPND--REIVR---LIMAFVGRGGQGDVGQRIRDEI 509
            +       T     +LL K    +P D  RE++      ++ +           IRD +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE--------SIRDGL 341

Query: 510 LVIQ--RNNGCK--TGMME--------EWHQKLHNNTS--PDDIIICEALLNYIRCGFKI 555
                 ++  C   T ++E          ++K+ +  S  P    I   LL         
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL--------- 392

Query: 556 DAYWQTL--NCHGLSKQKLASY---DRPIVSEPRFRADAKESLTRDLTMYLKTLKAVHSG 610
              W  +  +   +   KL  Y   ++            KES     ++YL+    + + 
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEK----------QPKESTISIPSIYLELKVKLENE 442

Query: 611 ADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHI--HDESINQ-----LMEKL- 662
             L  +I   Y    +  SD              +  +HI  H ++I       L   + 
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLD-----QYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 663 -----VDSRIELHPVLGTARGRAKDLLFLDISL----ASAIKTTMERGLKDL-NFSHPPE 712
                ++ +I        A G   + L   +              ER +  + +F    E
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

Query: 713 IMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYR 749
                S   + L ++++  ++ I+         E+++
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIF--------EEAHK 585

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Length = 794	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1188
2ols_A		794	Phosphoenolpyruvate synthase; MC structural genomi	100.0
1vbg_A		876	Pyruvate,orthophosphate dikinase; transferase, mai	99.96
1kbl_A		873	PPDK, pyruvate phosphate dikinase; transferase, ph	99.94
2x0s_A		913	Pyruvate phosphate dikinase; transferase, tropical	99.94
1h6z_A		913	Pyruvate phosphate dikinase; transferase, tropical	99.92
3t05_A		606	Pyruvate kinase, PK; tetramer, glycolysis, transfe	95.57
2e28_A		587	Pyruvate kinase, PK; allosteric, transferase; 2.40	94.89
2c3v_A		102	Alpha-amylase G-6; carbohydrate-binding module, st	94.08
2ols_A		794	Phosphoenolpyruvate synthase; MC structural genomi	93.93
1vbg_A		876	Pyruvate,orthophosphate dikinase; transferase, mai	93.65
1kbl_A		873	PPDK, pyruvate phosphate dikinase; transferase, ph	93.38
1h6z_A		913	Pyruvate phosphate dikinase; transferase, tropical	93.26
1zym_A		258	Enzyme I; phosphotransferase; 2.50A {Escherichia c	92.55
2laa_A		104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	91.12
2c3v_A		102	Alpha-amylase G-6; carbohydrate-binding module, st	89.51
2x0s_A		913	Pyruvate phosphate dikinase; transferase, tropical	88.2
2wqd_A		572	Phosphoenolpyruvate-protein phosphotransferase; ki	86.93
2hwg_A		575	Phosphoenolpyruvate-protein phosphotransferase; en	86.01
2laa_A		104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	82.0

>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}	Back alignment and structure

Probab=100.00  E-value=2.3e-36  Score=374.66  Aligned_cols=202  Identities=23%  Similarity=0.356  Sum_probs=178.4

Q ss_pred             cCcceeeCCCCCC---ccccHHhHHHHHhhhcCC-CCccCCCceEeCHHHHHHHHHhccchhHHHHHHHHHhhcCCCChH
Q 001019          969 RGKYAVSVEDFTP---DMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS 1044 (1188)
Q Consensus       969 ~~~~vl~l~e~~~---~~VGgKAanL~~L~~~~p-~g~~VP~GfvIpf~af~~fL~~~~~~~L~~~I~~L~~~l~~~d~~ 1044 (1188)
                      ++++|++|++.+.   .++|||++||++|.+.++ .|+|||+|||||+++|++|++.+   ++.+.|......++..+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~vGGK~anL~em~~~L~~~GlpVP~GF~Itt~a~~~fl~~~---~l~~~i~~~l~~l~~~~~~   78 (794)
T 2ols_A            2 ADNYVIWFENLRMTDVERVGGKNASLGEMISQLTEKGVRVPGGFATTAEAYRAFLAHN---GLSERISAALAKLDVEDVA   78 (794)
T ss_dssp             --CCEEEGGGCCGGGHHHHHHHHHHHHHHHHHHGGGTCCCCCEEEECHHHHHHHHTGG---GHHHHHHHHHHSCCTTSHH
T ss_pred             CCCEEEECCcCChhhcccCCHHHHHHHHHHHHHhhCCCCCCCEEEECHHHHHHHHHhC---ChHHHHHHHHHhhcccCHH
Confidence            4678999998764   699999999999986433 69999999999999999999987   7888888777777777765


Q ss_pred             HH----HHHHHHHHcCCCCHHHHHHHHHHH----------------HhcC-------CCCCCCC-------CHHHHHHHH
Q 001019         1045 KL----QEIQEAVLQMSAPLSLIYELKNKM----------------RSSG-------MPWPGDE-------GWNLAWRSI 1090 (1188)
Q Consensus      1045 ~L----~~IR~~I~~~~lP~el~~eL~~Av----------------RSSa-------~SfAG~~-------g~e~l~~AI 1090 (1188)
                      .|    .++|++|+++++|+++.++|.+++                |||+       .||||+|       +.+++++||
T Consensus        79 ~l~~~~~~ir~~I~~~~~p~~l~~~i~~a~~~l~~~~g~~~~~vaVRSSa~~EDl~~~sfAG~~~t~l~v~g~~~l~~Ai  158 (794)
T 2ols_A           79 ELARVGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADISVAVRSSATAEDLPDASFAGQQETFLNINGLDNVKEAM  158 (794)
T ss_dssp             HHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTSSCCCCEEEEEEECC-------CCSCSCEEEEECSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccccccCceEEEecCCChhhhhhhhhhhhhhhhhcCCCHHHHHHHH
Confidence            54    789999999999999999998765                3453       3799998       599999999


Q ss_pred             HHHHHhcCChHHHHHHHHcCCCCccccceeEEEEeeccc--eeEEEEecCCCCCCCCeEEEEEeccCCcccccCccCCCe
Q 001019         1091 KKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAM 1168 (1188)
Q Consensus      1091 k~VWASlfs~RA~~YRr~~Gi~~~~v~MAVLVQeMV~ad--~SGVlfT~nP~tgd~~ei~Ieav~GLGE~LVsG~vGtpd 1168 (1188)
                      |+||||+||+||+.||+.+|++++++.|||+||+||+++  +|||+||+||.||+++.++|+++|||||.||+|.+ +||
T Consensus       159 k~v~aS~~s~RAi~YR~~~gi~~~~~~mAV~VQ~MV~~~~s~sGV~FT~dP~tG~~~~~~I~a~~GlGE~vV~G~~-tpd  237 (794)
T 2ols_A          159 HHVFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQGAV-NPD  237 (794)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCC--CCCCEEEEEEECCCTTSSEEEEEESSCTTTCCCSEEEEEEEESCTHHHHHTSS-CCE
T ss_pred             HHHHHhcCCHHHHHHHHHcCCChHHhCceEEEEEcccCCceeEEEEEeCCCCCCCCceEEEEeccCCCceeecCCc-CCc
Confidence            999999999999999999999999999999999999999  99999999999999999999999999999999999 999


Q ss_pred             eEEEec
Q 001019         1169 SFVTKK 1174 (1188)
Q Consensus      1169 ~f~v~k 1174 (1188)
                      .|.++|
T Consensus       238 ~~~v~k  243 (794)
T 2ols_A          238 EFYVFK  243 (794)
T ss_dssp             EEEEEH
T ss_pred             EEEEec
Confidence            999998

PyMOL of 2ols

>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*	Back alignment and structure

>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A	Back alignment and structure

>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}	Back alignment and structure

>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A	Back alignment and structure

>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*	Back alignment and structure

>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}	Back alignment and structure

>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*	Back alignment and structure

>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}	Back alignment and structure

>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*	Back alignment and structure

>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A	Back alignment and structure

>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A	Back alignment and structure

>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A	Back alignment and structure

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A	Back alignment and structure

>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*	Back alignment and structure

>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}	Back alignment and structure

>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A	Back alignment and structure

>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A	Back alignment and structure

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1188
d1h6za3		405	d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N	0.001

>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]} Length = 405	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

 Score = 39.9 bits (92), Expect = 0.001
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 1082 GWNLAWRSIKKVWASKWNERAFISCRKANLNHDN----LCMAVLIQETICGDYAFVIHTK 1137
                 + +IK V+ S  N RA I  R  N+           A++           V  ++
Sbjct: 204  PVMQLFAAIKAVFRSWGNPRATIYRRMNNITGLLGTAVNVQAMVFGNINDRSATGVAFSR 263

Query: 1138 NPLSGDNSEIYTEIVKGLGETL 1159
            +P +G+N      +V   GE +
Sbjct: 264  SPSTGENFFFGEYLVNAQGEDV 285

PyMOL of d1h6za3

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1188
d1h6za3		405	Pyruvate phosphate dikinase, N-terminal domain {Tr	99.85
d1vbga3		380	Pyruvate phosphate dikinase, N-terminal domain {Ma	99.67
d1kbla3		375	Pyruvate phosphate dikinase, N-terminal domain {Cl	99.64
d1zyma2		124	N-terminal domain of enzyme I of the PEP:sugar pho	97.54
d1vbga2		135	Pyruvate phosphate dikinase, central domain {Maize	95.85
d1h6za2		132	Pyruvate phosphate dikinase, central domain {Trypa	95.59
d1kbla2		133	Pyruvate phosphate dikinase, central domain {Clost	94.6
d2hi6a1		132	Hypothetical protein AF0055 {Archaeoglobus fulgidu	93.09

>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.85  E-value=4.8e-22  Score=225.74  Aligned_cols=200  Identities=19%  Similarity=0.178  Sum_probs=137.0

Q ss_pred             cceeeCC----CCCC---ccccHHhHHHHHhhhcCCCCccCCCceEeCHHHHHHHHHhcc-chhHHHHHHHHHhhcC---
Q 001019          971 KYAVSVE----DFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI-NKDIANKISRLYKFIN--- 1039 (1188)
Q Consensus       971 ~~vl~l~----e~~~---~~VGgKAanL~~L~~~~p~g~~VP~GfvIpf~af~~fL~~~~-~~~L~~~I~~L~~~l~--- 1039 (1188)
                      +||++|.    +.+.   ++||||++||++|.+   +|||||+|||||+.+|++|++.|. .+.+.+.|......++   
T Consensus         4 ~~~~~~~~~~~~~~~~~~~lVGGK~AnLgel~~---~GipVP~GFvITt~Ay~~Fl~~n~L~~~i~~~i~~~l~~~~~~~   80 (405)
T d1h6za3           4 KWVYYFGGGNADGNKNMKELLGGKGANLAEMVN---LGIPVPPGFTITTEACKTYQETETIPQEVADQVRENVSRVEKEM   80 (405)
T ss_dssp             CCEEEECSSSCSCCTTCHHHHHHHHHHHHHHHH---TTCCCCCEEEECHHHHTTTTTSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEcCCCcccCCcchHhhccHHHHHHHHHHH---CcCCCCCCEEehHHHHHHHHHcCCCcHHHHHHHHHHHHhhhHHh
Confidence            6888886    5444   589999999999998   899999999999999999999873 3445444433211110   


Q ss_pred             ---CCCh-----------------H--------HH--HHHHHHHHcCCCCHHHHHHHHHHHH-hc-----CC--------
Q 001019         1040 ---GGDL-----------------S--------KL--QEIQEAVLQMSAPLSLIYELKNKMR-SS-----GM-------- 1075 (1188)
Q Consensus      1040 ---~~d~-----------------~--------~L--~~IR~~I~~~~lP~el~~eL~~AvR-SS-----a~-------- 1075 (1188)
                         .++.                 .        .+  ...+.+.....-++.........+. +.     +.        
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  160 (405)
T d1h6za3          81 GAKFGDPANPLLFSVRSGAAASMPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEEA  160 (405)
T ss_dssp             CCBTTCTTSBCCEEEEESCTTC-----CCCCSBSCCHHHHHHHGGGCGGGHHHHHHHHHHHHHHHHHHHHCCCSTTTSTT
T ss_pred             hhhhccccchhhhhcccccchhhhhhhhhhhhhhhhhhhHHHHHHhcccchhhHHHHHHHHHHhhcccccccchhHHHHH
Confidence               0000                 0        00  1112222222222222211111110 00     00        


Q ss_pred             ---------------------------------CCCCCC----CHHHHHHHHHHHHHhcCChHHHHHHHHcCCCCccccc
Q 001019         1076 ---------------------------------PWPGDE----GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCM 1118 (1188)
Q Consensus      1076 ---------------------------------SfAG~~----g~e~l~~AIk~VWASlfs~RA~~YRr~~Gi~~~~v~M 1118 (1188)
                                                       ...|.+    +.+++..+|+.||+|+|++||..||..+|+++.. .+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v~~S~~~~~a~~yr~~~~~~~~~-~~  239 (405)
T d1h6za3         161 LSRMKERRGTKFDTDLTASDLKELCDGYLELFELKTGCSFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITGLL-GT  239 (405)
T ss_dssp             THHHHHHHSCSCGGGCCHHHHHHHHHTTHHHHHHHSSSCCCCCHHHHHHHHHHHHHHTTTCTTTTTHHHHSCCCSCC-CC
T ss_pred             HHHHHHhccccccccCcHHHHHHHHHHHHHhhhhhcCCcccccchHHhHHHHHHHHhhhcCchHHHHHHhcCccchh-hh
Confidence                                             011222    3789999999999999999999999999998753 55


Q ss_pred             eeEEEEee-----ccceeEEEEecCCCCCCCCeEEEEEeccCCcccccCccCCCeeEEEecC
Q 001019         1119 AVLIQETI-----CGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKN 1175 (1188)
Q Consensus      1119 AVLVQeMV-----~ad~SGVlfT~nP~tgd~~ei~Ieav~GLGE~LVsG~vGtpd~f~v~k~ 1175 (1188)
                      ++++|.|+     .+..+||+||.||.+|+...+.+++++|+|+.+|+|.+ +|+.|..++.
T Consensus       240 ~~~~~~v~~~~~~~~~~sgv~~t~~~~tG~~~~~~~~~~~g~~~~vv~G~~-~~~~~~~~~~  300 (405)
T d1h6za3         240 AVNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIR-TPQQINHSLS  300 (405)
T ss_dssp             CEEEEECCCSCSSTTCEEEEEESSCSSSCCSSCEEEEEESCCTTHHHHCCS-CCEESSHHHH
T ss_pred             hheeeeeeecccccccccccccccCCCCCCCceeeEecccCcceeeccCcc-CCceeeeecc
Confidence            55555555     57799999999999999999999999999999999999 9998876553

PyMOL of d1h6za3

>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]}	Back information, alignment and structure

>d1zyma2 c.8.1.2 (A:3-21,A:145-249) N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central domain {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1h6za2 c.8.1.1 (A:406-537) Pyruvate phosphate dikinase, central domain {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central domain {Clostridium symbiosum [TaxId: 1512]}	Back information, alignment and structure

>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure