Citrus Sinensis ID: 001036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180
Protein Sequence
MFVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccEEccccccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccccEEEcccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccccccEEEccccccccccccHHHHHcccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccEEEcccHHcccccccccEEEccccccEEEccccccccccccccEEEccccccccccccccccccccccEEEccccccEEEccHHHHHccccccEEEccccccEEEccccccccccccEEEccccEEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEcEEccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccEEEccccccEEcccHHHHcccccccEEEcccccccccccHHHHHcccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHcccccHHcccccccccccccccccccccccccccEEEEEEEEEcccEEEEcHHHHccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccccccccccccEEEccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHEEEHHHHcccHHHHHHHHHHHHHHcEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEHHHHHcccccccHHHHHHHHHHHHHccccccccccccccEEEEEEcccccEEEEEEEcccccccccccccHHHcccccccEEEccccccccccccHcHHHHHccccccEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHHccccccEEEccccccccccccccccccEEEEEccccccccccHHHHcccccccEEEcccccccccccccHHHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEccccccccccccHHHccccccEEEEEccccccccccccHHHccccccEEEEcccccccccccccHHHHccccccEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHHcccccccEEEEcccccccccccccccccccccccEEEEccccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEEEccccccccccHHHccccccEEEEEEccccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHccccEEEEEEccccccccccHHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccHHHHEEEccccccccccccccccccHHHcccccEEEEEEccccccccccHHHHHHccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHEEEEHHHcccccccc
Coil and Loop (DISEMBL)
MFVLLLIIFgggwsegcldHERFALLRLkhfftdpydkgatdccqwegvecsnttGRVIGLYLSETYSGEYWylnaslftpfqqlesldlswnniagcaenegleglsrlnnlkmldlsgnafnnNVLSSLARLSSLRSlylsdnrlegsidvkeldslrdleeldiggnkiDKFMVSKGLSKlkslglsgtgfkgtfdvrefdsfnnlevldmsgneidnlvvpqglERLSRLsklkkldlrgnlcnnsILSSVARLSSLTSLHLSHnilqgsidakefdslsnleeldindneidnvevsrgyrglrklksldlsgvgirdGNKLlqsmgsfpslntlhlesnnftaTLTTTQelhnftnleyltlddsSLHISLLQSIGsifpslknlsmsgcevngvlsgqgfphfksleHLDMRFARIALNTSFLQIIGEsmpslkylslsgstlgtnssrildqglcplahlqelyidnndlrgslpwclanttslrILDVSfnqltgsisssplvhltsieelrlsnnhfripvsleplfnhsklkifdaknneingeineshsltpkfqlkslslssnygdsvtfpkflyhqHELKEAELSHIKMIGefpnwllenntkLEFLYLVNdslagpfrlpihshkrlrfldvsnnnfqghipveigdilpSLVYFNIsmnaldgsipssfgnVIFLQFLDlsnnkltgeipdhLAMCCVNLEFLSlsnnslkghiFSRIFSLRNLRWLLLEgnhfvgeipqslskcsslkglylnnnnlsgkiprwlgnlkglqhivmpknhlegpipvefcrldslqildisdnnisgslpscfyplsikqVHLSKNmlhgqlkegtffncsslvtldlsynylngsipdwidgLSQLSHLNLAHNNLEGEVPIQLCRlnqlqlldlsdnnlhglipscfdnttlhesynnnsspdkpfktsfsisgpqgsvEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDlscnklvghippqignltRIQTLNlshnnltgtipltfsnlrhIESLDLSynklsgkiprqlvDLNTLAIFIVAYNnlsgkipewTAQFATfnkssydgnpflcglplpicrslatmseastsnegddnlidmdsFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVidnliptrfch
Flexible Loop (DISEMBL)
MFVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYlsdnrlegsidvkeldslrdleeldiggnkidKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLeeldindneidnvevsrgyrglrklksldlsgvGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Low Complexity Region (SEG)
MFVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVlsslarlsslrslylsDNRLEGSIDVKeldslrdleeldIGGNKIDKFMVskglsklkslglsgtgfkgtfDVREFDSFNNLEVLDMSGNEIDNLVVPQGlerlsrlsklkkldlrGNLCNNSILSSVARlssltslhlshNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPslkylslsgstlgtnssRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVnleflslsnnslKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIqlcrlnqlqlldlsdnnlHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Disordered region (IsUnstruct)
*FVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI******************LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL***************************EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLAT************NLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFC*
Disordered Region (DISOPRED)
MFVLLLIIFGGGWS**CLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN**SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCG****************************DSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Disordered Region (DISEMBL)
MFVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Disordered Region (DISPRO)
MFVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFC*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1180	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.620	0.584	0.274	6e-68
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.706	0.667	0.279	2e-66
Q9LJF3	1164	Receptor-like protein kin	no	no	0.543	0.550	0.315	4e-61
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.582	0.623	0.319	6e-61
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.451	0.466	0.330	1e-60
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.559	0.566	0.291	1e-60
Q9C9H7	847	Receptor-like protein 12	no	no	0.555	0.773	0.304	2e-60
Q9FL28	1173	LRR receptor-like serine/	no	no	0.482	0.485	0.318	8e-60
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.509	0.502	0.301	1e-57
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.568	0.590	0.295	5e-57

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  259 bits (663), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 255/929 (27%), Positives = 402/929 (43%), Gaps = 197/929 (21%)

Query: 307  GLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTT------------ 354
            G R++  L+LSG+G+     +  S+G F +L  + L SN     + TT            
Sbjct: 69   GGREIIGLNLSGLGLT--GSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLH 126

Query: 355  -----------QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS 403
                        +L +  NL+ L L D+ L+ ++ ++ G++  +L+ L+++ C + G++ 
Sbjct: 127  LFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLV-NLQMLALASCRLTGLIP 185

Query: 404  GQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 463
                           RF R                                         
Sbjct: 186  S--------------RFGR----------------------------------------- 190

Query: 464  PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 523
             L  LQ L + +N+L G +P  + N TSL +   +FN+L GS+ +  L  L +++ L L 
Sbjct: 191  -LVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLG 248

Query: 524  NNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 581
            +N F   IP  L  L +   L +     N++ G I     LT    L++L LSSN    V
Sbjct: 249  DNSFSGEIPSQLGDLVSIQYLNLI---GNQLQGLI--PKRLTELANLQTLDLSSNNLTGV 303

Query: 582  TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 641
               +F +  ++L+   L+  ++ G  P  +  NNT L+ L+L    L+G     I + + 
Sbjct: 304  IHEEF-WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQS 362

Query: 642  LRFLDVSNNNFQGHIP------VEIGDI-----------------LPSLVYFNISMNALD 678
            L+ LD+SNN   G IP      VE+ ++                 L +L  F +  N L+
Sbjct: 363  LKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLE 422

Query: 679  GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 738
            G +P   G +  L+ + L  N+ +GE+P  +   C  L+ +    N L G I S I  L+
Sbjct: 423  GKVPKEIGFLGKLEIMYLYENRFSGEMPVEIG-NCTRLQEIDWYGNRLSGEIPSSIGRLK 481

Query: 739  NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG--------------- 783
            +L  L L  N  VG IP SL  C  +  + L +N LSG IP   G               
Sbjct: 482  DLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSL 541

Query: 784  ---------NLKGLQHI----------VMP-------------KNHLEGPIPVEFCRLDS 811
                     NLK L  I          + P             +N  EG IP+E  +  +
Sbjct: 542  QGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTN 601

Query: 812  LQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 870
            L  L +  N  +G +P  F  +S +  + +S+N L G +       C  L  +DL+ NYL
Sbjct: 602  LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGL-CKKLTHIDLNNNYL 660

Query: 871  NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 930
            +G IP W+  L  L  L L+ N   G +P ++  L  +  L L  N+L+G IP    N  
Sbjct: 661  SGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQ 720

Query: 931  LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 990
               + N   +          +SGP  S   K+ ++FE                    L L
Sbjct: 721  ALNALNLEEN---------QLSGPLPSTIGKLSKLFE--------------------LRL 751

Query: 991  SCNKLVGHIPPQIGNLTRIQT-LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 1049
            S N L G IP +IG L  +Q+ L+LS+NN TG IP T S L  +ESLDLS+N+L G++P 
Sbjct: 752  SRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPG 811

Query: 1050 QLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEA 1109
            Q+ D+ +L    ++YNNL GK+ +   QF+ +   ++ GN  LCG PL  C    + ++ 
Sbjct: 812  QIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQR 868

Query: 1110 STSNEGDDNLIDMDSFFITFTISYVIVIF 1138
            S S +    +  + S      +  VI++F
Sbjct: 869  SLSPKTVVIISAISSLAAIALMVLVIILF 897

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  255 bits (651), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 280/1001 (27%), Positives = 448/1001 (44%), Gaps = 167/1001 (16%)

Query: 180  GLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKK 239
            GL ++ +L L+G G  G+     F  F+NL  LD+S N   NLV P              
Sbjct: 69   GLFRVIALNLTGLGLTGSISPW-FGRFDNLIHLDLSSN---NLVGP-------------- 110

Query: 240  LDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV 299
                       I ++++ L+SL SL L  N L G I + +  SL N+  L I DNE+   
Sbjct: 111  -----------IPTALSNLTSLESLFLFSNQLTGEIPS-QLGSLVNIRSLRIGDNEL--- 155

Query: 300  EVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHN 359
                               VG      + +++G+  +L  L L S   T  + +  +L  
Sbjct: 156  -------------------VG-----DIPETLGNLVNLQMLALASCRLTGPIPS--QLGR 189

Query: 360  FTNLEYLTLDDSSLHISLLQSIG-----SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLE 414
               ++ L L D+ L   +   +G     ++F + +N+      +NG +  +       LE
Sbjct: 190  LVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENM------LNGTIPAE----LGRLE 239

Query: 415  HLD-MRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 473
            +L+ +  A  +L       +GE M  L+YLSL  + L      ++ + L  L +LQ L +
Sbjct: 240  NLEILNLANNSLTGEIPSQLGE-MSQLQYLSLMANQL----QGLIPKSLADLGNLQTLDL 294

Query: 474  DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPV 531
              N+L G +P    N + L  L ++ N L+GS+  S   + T++E+L LS       IPV
Sbjct: 295  SANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPV 354

Query: 532  SLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQH 591
             L        LK  D  NN + G I E+  L    +L  L L +N  +    P  + +  
Sbjct: 355  ELSKC---QSLKQLDLSNNSLAGSIPEA--LFELVELTDLYLHNNTLEGTLSPS-ISNLT 408

Query: 592  ELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNN 651
             L+   L H  + G+ P  +     KLE L+L  +  +G     I +   L+ +D+  N+
Sbjct: 409  NLQWLVLYHNNLEGKLPKEI-SALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNH 467

Query: 652  FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM 711
            F+G IP  IG  L  L   ++  N L G +P+S GN   L  LDL++N+L+G IP     
Sbjct: 468  FEGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGF 526

Query: 712  CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 771
                LE L L NNSL+G++   + SLRNL  + L  N   G I   L   SS     + N
Sbjct: 527  L-KGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLCGSSSYLSFDVTN 584

Query: 772  NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY 831
            N    +IP  LGN + L  + + KN L G IP    ++  L +LD+S N ++G++P    
Sbjct: 585  NGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIP---- 640

Query: 832  PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 891
                 Q+ L K + H                +DL+ N+L+G IP W+  LSQL  L L+ 
Sbjct: 641  ----LQLVLCKKLTH----------------IDLNNNFLSGPIPPWLGKLSQLGELKLSS 680

Query: 892  NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSI 951
            N     +P +L    +L +L L  N+L+G IP    N       N +       K  FS 
Sbjct: 681  NQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLD-------KNQFSG 733

Query: 952  SGPQGSVEKKILEIFEFTTKNIAYAYQ-----GRVLSLLAGLDLSCNKLVGHIPPQIGNL 1006
            S PQ     K+ +++E      +   +     G++  L + LDLS N   G IP  IG L
Sbjct: 734  SLPQAM--GKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTL 791

Query: 1007 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 1066
            ++++TL+LSHN LTG +P +  +++ +  L++S+N L GK+ +                 
Sbjct: 792  SKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK----------------- 834

Query: 1067 LSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFF 1126
                      QF+ +   S+ GN  LCG PL  C  +     ++   +G    +   S  
Sbjct: 835  ----------QFSRWPADSFLGNTGLCGSPLSRCNRV----RSNNKQQG----LSARSVV 876

Query: 1127 ITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYY 1167
            I   IS +  I  +++V+ +  ++++R  +  ++   S  Y
Sbjct: 877  IISAISALTAIGLMILVIAL--FFKQRHDFFKKVGHGSTAY 915

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  237 bits (605), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 219/694 (31%), Positives = 325/694 (46%), Gaps = 53/694 (7%)

Query: 489  TTSLRILDVSF--NQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKI 544
            +T L ++ V+F  N+L G + SSP      I  + LSNN F   IP +    F +S LK 
Sbjct: 147  STCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLSNNRFSDEIPETFIADFPNS-LKH 205

Query: 545  FDAKNNEINGEINE-SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKM 603
             D   N + G+ +  S  L     + SLS +S  GD   FP  L +   L+   LS   +
Sbjct: 206  LDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISGDR--FPVSLSNCKLLETLNLSRNSL 263

Query: 604  IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 663
            IG+ P                 D   G F       + LR L +++N + G IP E+  +
Sbjct: 264  IGKIPG----------------DDYWGNF-------QNLRQLSLAHNLYSGEIPPELSLL 300

Query: 664  LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723
              +L   ++S N+L G +P SF +   LQ L+L NNKL+G+    +      +  L L  
Sbjct: 301  CRTLEVLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPF 360

Query: 724  NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ---SLSKCSSLKGLYLNNNNLSGKIPR 780
            N++ G +   + +  NLR L L  N F GE+P    SL   S L+ L + NN LSG +P 
Sbjct: 361  NNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPV 420

Query: 781  WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQV 838
             LG  K L+ I +  N L G IP E   L  L  L +  NN++G +P   C    +++ +
Sbjct: 421  ELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETL 480

Query: 839  HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 898
             L+ N+L G L E +   C++++ + LS N L G IP  I  L +L+ L L +N+L G +
Sbjct: 481  ILNNNLLTGSLPE-SISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNI 539

Query: 899  PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF---KTSFSISGPQ 955
            P +L     L  LDL+ NNL G +P    +        + S     F   +      G  
Sbjct: 540  PSELGNCKNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAG 599

Query: 956  GSVE-----KKILEIFEFT-TKNIAYAYQGRVLSLLAG------LDLSCNKLVGHIPPQI 1003
            G VE      + LE F    +      Y G  + + +       LDLS N + G IP   
Sbjct: 600  GLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGY 659

Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063
            G +  +Q LNL HN LTGTIP +F  L+ I  LDLS+N L G +P  L  L+ L+   V+
Sbjct: 660  GAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVS 719

Query: 1064 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMD 1123
             NNL+G IP +  Q  TF  + Y  N  LCG+PLP C S +  + +    +       M 
Sbjct: 720  NNNLTGPIP-FGGQLTTFPLTRYANNSGLCGVPLPPCSSGSRPTRSHAHPKKQSIATGMS 778

Query: 1124 SFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYL 1157
            +  +   +  V++I  +     V    ++R  Y+
Sbjct: 779  AGIVFSFMCIVMLIMALYRARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  236 bits (603), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 236/738 (31%), Positives = 346/738 (46%), Gaps = 51/738 (6%)

Query: 451  GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 510
            G N S  L   +C L  L++L +  N + G +P  L+   SL +LD+  N+  G I    
Sbjct: 76   GMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQ- 134

Query: 511  LVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL 568
            L  + ++++L L  N+    IP  +  L +  +L I+   +N + G I    S+    QL
Sbjct: 135  LTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIY---SNNLTGVI--PPSMAKLRQL 189

Query: 569  KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 628
            + +    N G S   P  +     LK   L+   + G  P  L E    L  L L  + L
Sbjct: 190  RIIRAGRN-GFSGVIPSEISGCESLKVLGLAENLLEGSLPKQL-EKLQNLTDLILWQNRL 247

Query: 629  AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 688
            +G     + +  RL  L +  N F G IP EIG  L  +    +  N L G IP   GN+
Sbjct: 248  SGEIPPSVGNISRLEVLALHENYFTGSIPREIGK-LTKMKRLYLYTNQLTGEIPREIGNL 306

Query: 689  IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 748
            I    +D S N+LTG IP       +NL+ L L  N L G I   +  L  L  L L  N
Sbjct: 307  IDAAEIDFSENQLTGFIPKEFGHI-LNLKLLHLFENILLGPIPRELGELTLLEKLDLSIN 365

Query: 749  HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 808
               G IPQ L     L  L L +N L GKIP  +G       + M  N L GPIP  FCR
Sbjct: 366  RLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCR 425

Query: 809  LDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 867
              +L +L +  N +SG++P       S+ ++ L  N L G L     FN  +L  L+L  
Sbjct: 426  FQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPI-ELFNLQNLTALELHQ 484

Query: 868  NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP---- 923
            N+L+G+I   +  L  L  L LA+NN  GE+P ++  L ++   ++S N L G IP    
Sbjct: 485  NWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELG 544

Query: 924  SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT----TKNIAYAYQG 979
            SC     L  S N         K S  I+   G +    LEI   +    T  I +++  
Sbjct: 545  SCVTIQRLDLSGN---------KFSGYIAQELGQL--VYLEILRLSDNRLTGEIPHSFGD 593

Query: 980  RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDL 1038
              L+ L  L L  N L  +IP ++G LT +Q +LN+SHNNL+GTIP +  NL+ +E L L
Sbjct: 594  --LTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYL 651

Query: 1039 SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 1098
            + NKLSG+IP  + +L +L I  ++ NNL G +P+ TA F   + S++ GN  LC     
Sbjct: 652  NDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPD-TAVFQRMDSSNFAGNHGLCNSQRS 710

Query: 1099 ICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYW--RRRWLY 1156
             C+ L   S++       + LI+        TI+  IVI  + ++ ++   W  +RR   
Sbjct: 711  HCQPLVPHSDSKL-----NWLINGSQRQKILTIT-CIVIGSVFLITFLGLCWTIKRREPA 764

Query: 1157 LVEMW------ITSCYYF 1168
             V +       +   YYF
Sbjct: 765  FVALEDQTKPDVMDSYYF 782

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  236 bits (601), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 184/557 (33%), Positives = 271/557 (48%), Gaps = 24/557 (4%)

Query: 612  LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 671
            L N T L+ L L  ++  G         K L+ LD+S+N   G IP EIGD   SL    
Sbjct: 224  LINCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLR 283

Query: 672  ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 731
            +S N   G IP S  +  +LQ LDLSNN ++G  P+ +     +L+ L LSNN + G   
Sbjct: 284  LSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFP 343

Query: 732  SRIFSLRNLRWLLLEGNHFVGEIPQSLSK-CSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 790
            + I + ++LR      N F G IP  L    +SL+ L L +N ++G+IP  +     L+ 
Sbjct: 344  TSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRT 403

Query: 791  IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQL 849
            I +  N+L G IP E   L  L+      NNI+G +P     L  +K + L+ N L G++
Sbjct: 404  IDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEI 463

Query: 850  KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ 909
                FFNCS++  +  + N L G +P     LS+L+ L L +NN  GE+P +L +   L 
Sbjct: 464  PP-EFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLV 522

Query: 910  LLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF---KTSFSISGPQGSVE------K 960
             LDL+ N+L G IP         ++ +   S +          S  G  G VE      +
Sbjct: 523  WLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPE 582

Query: 961  KILEIFEFTTKNIAYAYQGRVLSLLAG------LDLSCNKLVGHIPPQIGNLTRIQTLNL 1014
            ++L+I    + +    Y G +LSL         LDLS N+L G IP +IG +  +Q L L
Sbjct: 583  RLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLEL 642

Query: 1015 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 1074
            SHN L+G IP T   L+++   D S N+L G+IP    +L+ L    ++ N L+G IP+ 
Sbjct: 643  SHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQ- 701

Query: 1075 TAQFATFNKSSYDGNPFLCGLPLPICRS-----LATMSEASTSNEGDDNLIDMDSFFITF 1129
              Q +T   + Y  NP LCG+PLP C++      A   E   +  G       +S  +  
Sbjct: 702  RGQLSTLPATQYANNPGLCGVPLPECKNGNNQLPAGTEEGKRAKHGTRAASWANSIVLGV 761

Query: 1130 TISYVIVIFGIVVVLYV 1146
             IS   V   IV  + V
Sbjct: 762  LISAASVCILIVWAIAV 778

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  236 bits (601), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 210/721 (29%), Positives = 338/721 (46%), Gaps = 61/721 (8%)

Query: 466  AHLQELYIDNNDLR--GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 523
             +LQ L + +N +     + +  +  ++L  +++S N+L G +  +P   L S+  + LS
Sbjct: 125  CYLQVLDLSSNSISDYSMVDYVFSKCSNLVSVNISNNKLVGKLGFAP-SSLQSLTTVDLS 183

Query: 524  NNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINE-SHSLTPKFQLKSLSLSSNYGDS 580
             N    +IP S    F  S LK  D  +N ++G+ ++ S  +       SLS ++  GD 
Sbjct: 184  YNILSDKIPESFISDFPAS-LKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQNNLSGDK 242

Query: 581  VTFPKFLYHQHELKEAELSHIKMIGEFPN---WLLENNTKLEFLYLVNDSLAGPFRLPIH 637
              FP  L +   L+   +S   + G+ PN   W                           
Sbjct: 243  --FPITLPNCKFLETLNISRNNLAGKIPNGEYW--------------------------G 274

Query: 638  SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 697
            S + L+ L +++N   G IP E+  +  +LV  ++S N   G +PS F   ++LQ L+L 
Sbjct: 275  SFQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLG 334

Query: 698  NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ- 756
            NN L+G+  + +      + +L ++ N++ G +   + +  NLR L L  N F G +P  
Sbjct: 335  NNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSG 394

Query: 757  --SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 814
              SL     L+ + + NN LSG +P  LG  K L+ I +  N L GPIP E   L +L  
Sbjct: 395  FCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSD 454

Query: 815  LDISDNNISGSLPS--CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 872
            L +  NN++G++P   C    +++ + L+ N+L G + E +   C++++ + LS N L G
Sbjct: 455  LVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPE-SISRCTNMIWISLSSNRLTG 513

Query: 873  SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 932
             IP  I  LS+L+ L L +N+L G VP QL     L  LDL+ NNL G +P    +    
Sbjct: 514  KIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGL 573

Query: 933  ESYNNNSSPDKPF---KTSFSISGPQGSVEKKILEIFEFTTKNIAYA------YQGRVLS 983
                + S     F   +      G  G VE + +         + ++      Y G  + 
Sbjct: 574  VMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMY 633

Query: 984  LLAG------LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037
              +        D+S N + G IPP  GN+  +Q LNL HN +TGTIP +F  L+ I  LD
Sbjct: 634  TFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLD 693

Query: 1038 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 1097
            LS+N L G +P  L  L+ L+   V+ NNL+G IP +  Q  TF  S Y  N  LCG+PL
Sbjct: 694  LSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIP-FGGQLTTFPVSRYANNSGLCGVPL 752

Query: 1098 PICRSLATMSEASTSNEGDDNLIDMDSFFITFT-ISYVIVIFGIVVVLYVNPYWRRRWLY 1156
              C S       S  +     +       I F+ + +V+++  +  V  V    ++R  Y
Sbjct: 753  RPCGSAPRRPITSRIHAKKQTVATAVIAGIAFSFMCFVMLVMALYRVRKVQKKEQKREKY 812

Query: 1157 L 1157
            +
Sbjct: 813  I 813

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  234 bits (598), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 230/755 (30%), Positives = 356/755 (47%), Gaps = 100/755 (13%)

Query: 450  LGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 509
            L TNSS      L  L +L+ L + N +L G +P  L N + L ++++ FN+  G I +S
Sbjct: 100  LKTNSS------LFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPAS 153

Query: 510  PLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 567
             + +L  +  L L+NN     IP SL  L     L++F   +N + G+I +S  +    Q
Sbjct: 154  -IGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELF---SNRLVGKIPDS--IGDLKQ 207

Query: 568  LKSLSLSSN--YGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 625
            L++LSL+SN   G+    P  L +   L    L+H +++GE P   + N  +L  +   N
Sbjct: 208  LRNLSLASNNLIGE---IPSSLGNLSNLVHLVLTHNQLVGEVPA-SIGNLIELRVMSFEN 263

Query: 626  DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF 685
            +SL+G   +   +  +L    +S+NNF    P ++  I  +L YF++S N+  G  P S 
Sbjct: 264  NSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMS-IFHNLEYFDVSYNSFSGPFPKSL 322

Query: 686  GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 745
              +  L+ + L  N+ TG I          L+ L L  N L G I   I  L NL  L +
Sbjct: 323  LLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDI 382

Query: 746  EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR--WLGNLKGLQH------------- 790
              N+F G IP ++SK  +L  L L+ NNL G++P   W  N   L H             
Sbjct: 383  SHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEE 442

Query: 791  -----IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF--YPLSIKQVHLSKN 843
                 + +  N  +GPIP   C+L SL  LD+S+N  SGS+PSC   +  SIK+++L  N
Sbjct: 443  ALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDN 502

Query: 844  MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD------------------------WID 879
               G L +  F   + LV+LD+S+N L G  P                         W++
Sbjct: 503  NFSGTLPD-IFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLE 561

Query: 880  GLSQLSHLNLAHNNLEGEVPIQLCRL--NQLQLLDLSDNNLHGLIPSCF-----DNTTLH 932
             L  L  LNL  N   G +  +   +    L+++D+S NN  G +P  +     D TTL 
Sbjct: 562  SLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLT 621

Query: 933  ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 992
            E  +        + T F                 E   K +  +++ R+      +D S 
Sbjct: 622  EEMDQ-------YMTEF------WRYADSYYHEMEMVNKGVDMSFE-RIRRDFRAIDFSG 667

Query: 993  NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV 1052
            NK+ G+IP  +G L  ++ LNLS N  T  IP   +NL  +E+LD+S NKLSG+IP+ L 
Sbjct: 668  NKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLA 727

Query: 1053 DLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEAST- 1111
             L+ L+    ++N L G +P  T QF     SS+  NP L GL   ICR    ++  S  
Sbjct: 728  ALSFLSYMNFSHNLLQGPVPRGT-QFQRQKCSSFLDNPGLYGLE-DICRDTGALNPTSQL 785

Query: 1112 ---SNEGDDNLIDMDSFFITFTISYVI-VIFGIVV 1142
                +E ++N+ +    ++   I+Y   V+ G+V+
Sbjct: 786  PEDLSEAEENMFN----WVAAAIAYGPGVLCGLVI 816

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  233 bits (594), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 214/671 (31%), Positives = 314/671 (46%), Gaps = 102/671 (15%)

Query: 462  LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 521
            L  L HLQ      N L GS+P  +    +L  LD+S NQLTG I      +L +++ L 
Sbjct: 188  LGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLV 246

Query: 522  LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 581
            L+ N     +  E + N S L   +  +N++ G+I     L    QL++L +  N   S 
Sbjct: 247  LTENLLEGDIPAE-IGNCSSLVQLELYDNQLTGKI--PAELGNLVQLQALRIYKNKLTS- 302

Query: 582  TFPKFLYHQHELKEAELSHIKMIGEFPNWL--LENNTKLEFLYLVNDSLAGPFRLPIHSH 639
            + P  L+   +L    LS   ++G     +  LE+   LE L L +++  G F   I + 
Sbjct: 303  SIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSNNFTGEFPQSITNL 359

Query: 640  KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 699
            + L  L V  NN  G +P ++G +L +L   +   N L G IPSS  N   L+ LDLS+N
Sbjct: 360  RNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHN 418

Query: 700  KLTGEIPDHLAMC----------------------CVNLEFLSLSNNSLKGHIFSRIFSL 737
            ++TGEIP                            C NLE LS+++N+L G +   I  L
Sbjct: 419  QMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKL 478

Query: 738  RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 797
            + LR L +  N   G IP+ +     L  LYL++N  +G+IPR + NL  LQ + M  N 
Sbjct: 479  QKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSND 538

Query: 798  LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFN 856
            LEGPIP E   +  L +LD+S+N  SG +P+ F  L S+  + L  N  +G +   +  +
Sbjct: 539  LEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIP-ASLKS 597

Query: 857  CSSLVTLDLSYNYLNGSIP-DWIDGLSQLS-HLNLAHNNLEGEVPIQLCRLNQLQLLDLS 914
             S L T D+S N L G+IP + +  L  +  +LN ++N L G +P +L +L  +Q +DLS
Sbjct: 598  LSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLS 657

Query: 915  DNNLHGLIP----SCFDNTTLHESYNNNSS--PDKPFKTSFSISGPQGSVEKKILEIFEF 968
            +N   G IP    +C +  TL  S NN S   PD+ F                       
Sbjct: 658  NNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVF----------------------- 694

Query: 969  TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 1028
                     QG  + ++  L+LS N   G IP   GN+T + +L+LS NNLTG IP + +
Sbjct: 695  ---------QG--MDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLA 743

Query: 1029 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDG 1088
            NL  ++ L L                        A NNL G +PE +  F   N S   G
Sbjct: 744  NLSTLKHLKL------------------------ASNNLKGHVPE-SGVFKNINASDLMG 778

Query: 1089 NPFLCGLPLPI 1099
            N  LCG   P+
Sbjct: 779  NTDLCGSKKPL 789

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  226 bits (575), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 206/683 (30%), Positives = 320/683 (46%), Gaps = 82/683 (12%)

Query: 466  AHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 523
            A L  L +  N L G +     L + + L+ L+VS N L      S  + L S+E L LS
Sbjct: 122  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 181

Query: 524  NNHFRIPVSLEPLFNHS--KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 581
             N       +  + +    +LK      N+I+G+++ S  +  +F    L +SSN  +  
Sbjct: 182  ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF----LDVSSN--NFS 235

Query: 582  TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 641
            T   FL     L+  ++S  K+ G+F +  +   T+L+ L + ++   GP  +P    K 
Sbjct: 236  TGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKS 292

Query: 642  LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF----------- 690
            L++L ++ N F G IP  +     +L   ++S N   G++P  FG+              
Sbjct: 293  LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 352

Query: 691  --------------LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS 736
                          L+ LDLS N+ +GE+P+ L     +L  L LS+N+  G I   +  
Sbjct: 353  SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 412

Query: 737  --LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794
                 L+ L L+ N F G+IP +LS CS L  L+L+ N LSG IP  LG+L  L+ + + 
Sbjct: 413  NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 472

Query: 795  KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 854
             N LEG IP E   + +L+ L +  N+++G +PS                          
Sbjct: 473  LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------------- 509

Query: 855  FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 914
             NC++L  + LS N L G IP WI  L  L+ L L++N+  G +P +L     L  LDL+
Sbjct: 510  -NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 568

Query: 915  DNNLHGLIPSCFDNTTLHESYN----------NNSSPDKPFKTSFSISGPQGSVEKKILE 964
             N  +G IP+     +   + N           N    K    + ++   QG   +++  
Sbjct: 569  TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 628

Query: 965  IFEFTTKNI-AYAYQGRVLSL------LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 1017
            +      NI +  Y G           +  LD+S N L G+IP +IG++  +  LNL HN
Sbjct: 629  LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 688

Query: 1018 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077
            +++G+IP    +LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   Q
Sbjct: 689  DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQ 747

Query: 1078 FATFNKSSYDGNPFLCGLPLPIC 1100
            F TF  + +  NP LCG PLP C
Sbjct: 748  FETFPPAKFLNNPGLCGYPLPRC 770

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  223 bits (569), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 216/732 (29%), Positives = 346/732 (47%), Gaps = 61/732 (8%)

Query: 454  SSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVH 513
            S RI D+ +  L  L++L + +N   G++P  LA  T L  + + +N L+G +  + + +
Sbjct: 81   SGRISDR-ISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPA-MRN 138

Query: 514  LTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 571
            LTS+E   ++ N     IPV L      S L+  D  +N  +G+I    +   + QL +L
Sbjct: 139  LTSLEVFNVAGNRLSGEIPVGLP-----SSLQFLDISSNTFSGQIPSGLANLTQLQLLNL 193

Query: 572  SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP 631
            S +   G+    P  L +   L+   L    + G  P+  + N + L  L    + + G 
Sbjct: 194  SYNQLTGE---IPASLGNLQSLQYLWLDFNLLQGTLPS-AISNCSSLVHLSASENEIGGV 249

Query: 632  FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI-PSSFGNV-I 689
                  +  +L  L +SNNNF G +P  +     SL    +  NA    + P +  N   
Sbjct: 250  IPAAYGALPKLEVLSLSNNNFSGTVPFSL-FCNTSLTIVQLGFNAFSDIVRPETTANCRT 308

Query: 690  FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 749
             LQ LDL  N+++G  P  L    ++L+ L +S N   G I   I +L+ L  L L  N 
Sbjct: 309  GLQVLDLQENRISGRFPLWLT-NILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNS 367

Query: 750  FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL 809
              GEIP  + +C SL  L    N+L G+IP +LG +K L+ + + +N   G +P     L
Sbjct: 368  LTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNL 427

Query: 810  DSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 868
              L+ L++ +NN++GS P     L S+ ++ LS N   G +   +  N S+L  L+LS N
Sbjct: 428  QQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPV-SISNLSNLSFLNLSGN 486

Query: 869  YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928
              +G IP  +  L +L+ L+L+  N+ GEVP++L  L  +Q++ L  NN  G++P  F +
Sbjct: 487  GFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGF-S 545

Query: 929  TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV--LSLLA 986
            + +   Y N SS       SFS   PQ     ++L     +  +I+ +    +   S L 
Sbjct: 546  SLVSLRYVNLSS------NSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALE 599

Query: 987  GLDLSCNKLVGHIPPQIGNLTRIQTLNLS------------------------HNNLTGT 1022
             L+L  N+L+GHIP  +  L R++ L+L                         HN+L+G 
Sbjct: 600  VLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGV 659

Query: 1023 IPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT-LAIFIVAYNNLSGKIPEWTAQFATF 1081
            IP +FS L ++  +DLS N L+G+IP  L  +++ L  F V+ NNL G+IP         
Sbjct: 660  IPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRIN- 718

Query: 1082 NKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIV 1141
            N S + GN  LCG P      L    E+ST+ EG      M    +   I   ++     
Sbjct: 719  NTSEFSGNTELCGKP------LNRRCESSTA-EGKKKKRKMILMIVMAAIGAFLLSLFCC 771

Query: 1142 VVLYVNPYWRRR 1153
              +Y    WR++
Sbjct: 772  FYVYTLLKWRKK 783

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1180
224124658	1228	predicted protein [Populus trichocarpa]	0.953	0.916	0.411	0.0
224098008	1097	predicted protein [Populus trichocarpa]	0.888	0.955	0.415	0.0
255581263	912	serine-threonine protein kinase, plant-t	0.627	0.812	0.509	0.0
224142481	781	predicted protein [Populus trichocarpa]	0.638	0.965	0.469	1e-179
224073436	1014	predicted protein [Populus trichocarpa]	0.737	0.857	0.431	1e-177
224073382	1309	predicted protein [Populus trichocarpa]	0.894	0.805	0.376	1e-173
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.755	0.609	0.429	1e-172
224073422	969	predicted protein [Populus trichocarpa]	0.751	0.915	0.419	1e-172
224134891	953	predicted protein [Populus trichocarpa]	0.660	0.817	0.444	1e-170
224124626	1126	predicted protein [Populus trichocarpa]	0.864	0.905	0.387	1e-170

>gi|224124658|ref|XP_002330078.1| predicted protein [Populus trichocarpa] gi|222871503|gb|EEF08634.1| predicted protein [Populus trichocarpa]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/1264 (41%), Positives = 713/1264 (56%), Gaps = 139/1264 (10%)

Query: 1    MFVLLLIIFGG--GWSEGCLDHERFALLRLKHFFTDP-------YDKGATDCCQWEGVEC 51
            M + LL + G   G   GCL+ ER  LL +K    DP       + + +++CC+W  +EC
Sbjct: 5    MLLALLTLVGDWCGRCYGCLEEERIGLLEIKPLI-DPNSIYMRDWVEYSSNCCEWPRIEC 63

Query: 52   SNTTGRVI-GLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLS-R 109
             NTT RVI  L+L +  S   W LNASLF PF++L+SLDLS+N + GC+ENEG E LS +
Sbjct: 64   DNTTRRVIHSLFLKQGQSLG-WVLNASLFLPFKELQSLDLSYNGLVGCSENEGFEVLSSK 122

Query: 110  LNNLKMLDLSGNAFNNN--VLSSLARLSSLRSLYLSDNRLEGSIDVKELDS-LRDLEELD 166
            L  L++LDL+ N FNN+  +LS    LS+L+SL LSDN+L GS  +K L S L+ LE L 
Sbjct: 123  LRKLEVLDLTRNRFNNDKGILSCFNGLSALKSLDLSDNQLTGS-GLKVLSSRLKKLENLH 181

Query: 167  IGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQ 226
            +  N+ +  + S           S TGF            ++L+ LD+S NE    V   
Sbjct: 182  LSANQCNDSIFS-----------SITGF------------SSLKSLDLSYNE----VTGS 214

Query: 227  GLERLS-RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGS----IDAKEFD 281
            GL+ LS RL +L+ LDL  N CN+SI SS+   SSL SL+LS+N L GS    I+   + 
Sbjct: 215  GLKVLSSRLKRLENLDLSDNQCNDSIFSSLTGFSSLKSLNLSYNQLTGSSMVSIEKNGYY 274

Query: 282  S---------------------------LSNLEELDINDNEIDNVEVSRGYRGLRKLKSL 314
            S                           L NLEEL +  N+++N  +     G   LKSL
Sbjct: 275  SFLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELHLYSNKLNN-NILSSLSGFSTLKSL 333

Query: 315  DLS--------GV-GIRD-----------GNKLLQSMGSFPSLNTLHLESNNFTATLTTT 354
            DLS        G+ G+R+            N +L S+  F +L +L L +N FT ++   
Sbjct: 334  DLSYNKFTGSTGLKGLRNLEELYLGFNKFNNSILSSLSGFSTLKSLDLSNNKFTGSIG-- 391

Query: 355  QELHNFTNLEYLTLDDSSLHISLL-QSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 413
              L    NLE L L+ +    S+L +S+G++ PSLK L  S  +      G+G  +  SL
Sbjct: 392  --LKGLRNLETLNLEYTDFKESILIESLGAL-PSLKTLYASYSKFKHF--GKGLSNSSSL 446

Query: 414  EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 473
            E + + ++ +    SFL+ IG  + +LK LSL+G      SS +  +G C L +L+ L++
Sbjct: 447  EEVFLYYSYLP--ASFLRNIGH-LSTLKVLSLAGVDF---SSTLPAEGWCELKNLEHLFL 500

Query: 474  DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 533
              N+L+G LP CL N +SLR LD+S NQL G+I+ S L HL  +E L +S NHF++P S 
Sbjct: 501  SRNNLKGVLPPCLGNLSSLRSLDLSDNQLEGNIALSHLSHLPQLEYLSVSYNHFQVPKSF 560

Query: 534  EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLS--SNYGDSVTFPKFLYHQH 591
                N S LK F   NNE+         L PKFQL   S S  ++      FP FL  Q+
Sbjct: 561  GSFMNLSNLKFFACDNNELI-PAPSFQPLVPKFQLLFFSASNCTSKPHEAGFPNFLQSQY 619

Query: 592  ELKEAELSHIKMIGE-FPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNN 650
            +L   +LSH K +GE FP+WL ENNTKL  LYL + S  GP +LP H    L+ +D+S N
Sbjct: 620  DLVVVDLSHNKFVGEPFPSWLFENNTKLNRLYLRDTSFIGPLQLPQHPTPNLQTVDMSGN 679

Query: 651  NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH-L 709
            +  G I   I  I P L  F ++ N+L G IP  FGN+  L +LDLSNN ++ E+ +H  
Sbjct: 680  SIHGQIARNICSIFPRLKNFMMANNSLTGCIPPCFGNMSSLGYLDLSNNHMSCELLEHNF 739

Query: 710  AMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 769
                 +L FL LSNN+ KG +   +F++  L +L L+GN   G++  + S  SS     +
Sbjct: 740  PTVGSSLWFLKLSNNNFKGRLPLSVFNMTGLLYLFLDGNKLAGQVSDTFSLASSFLWFDI 799

Query: 770  NNNNLSGKIPRWLGN--LKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP 827
            +NN LSG +PR +GN  L  LQ I + +NH EG IP+E+     L+ LD+S+NN+SGSLP
Sbjct: 800  SNNILSGMLPRGIGNSSLNSLQGIDLSRNHFEGTIPIEYFNSSGLEFLDLSENNLSGSLP 859

Query: 828  SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL 887
              F  L ++ VHL  N L G L    F+N SSL TLDL  N L G IP+WID LS+LS  
Sbjct: 860  LGFNALDLRYVHLYGNRLSGPLPF-DFYNLSSLATLDLGDNNLTGPIPNWIDSLSELSIF 918

Query: 888  NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKT 947
             L  N   G++P QLC+L +L +LDLS+NN  GL+PSC  N  L+ + ++  + D P   
Sbjct: 919  VLKSNQFNGKLPHQLCKLRKLSILDLSENNFSGLLPSCLRN--LNFTASDEKTLDAPRTG 976

Query: 948  S---------FSISGPQGSVEKKIL--EI-----FEFTTKNIAYAYQGRVLSLLAGLDLS 991
            S          SI G   S++  IL  EI      E T K   Y Y+G +L  ++ +DLS
Sbjct: 977  SDYGSGEEIFASIGGRGFSLDDNILWAEISVKISVELTAKKNFYTYEGDILRYMSVMDLS 1036

Query: 992  CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 1051
            CN+  G IP + GNL+ I +LNLS NNLTG IP +F NL+ IESLDLS+N L+G+IP QL
Sbjct: 1037 CNRFNGEIPTEWGNLSGIYSLNLSQNNLTGLIPSSFFNLKQIESLDLSHNNLNGRIPAQL 1096

Query: 1052 VDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEAST 1111
            V+L  L +F V+YNNLSG+ PE   QFATF++SSY GNP LCG PL           A  
Sbjct: 1097 VELTFLEVFNVSYNNLSGRTPEMKNQFATFDESSYKGNPLLCGPPLQNSCDKTESPSARV 1156

Query: 1112 SNE--GDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFV 1169
             N+  GD   IDMDSF+ +F + Y+IV+  I  VL +NP+WRRRW Y +E  I +C  F+
Sbjct: 1157 PNDFNGDGGFIDMDSFYASFGVCYIIVVLTIAAVLCINPHWRRRWFYFIEECIDTCCCFL 1216

Query: 1170 IDNL 1173
              N 
Sbjct: 1217 AINF 1220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1196 (41%), Positives = 656/1196 (54%), Gaps = 148/1196 (12%)

Query: 3    VLLLIIFGGGW---SEGCLDHERFALLRLKHF-------FTDPYDKGATDCCQWEGVECS 52
            +L L    G W     GCL+ ER  LL ++         + D +    ++CC+W G+EC 
Sbjct: 11   LLALFTLVGEWHGRCYGCLEEERIGLLEIQSLINPHGVSWRDHWVDTNSNCCEWRGIECD 70

Query: 53   NTTGRVIGLYL--SETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRL 110
            NTT RVI L L  +  +    W LNASLF PF++L  LDL    + GC ENEG E LS  
Sbjct: 71   NTTRRVIQLSLWGARDFHLGDWVLNASLFQPFKELRGLDLGGTGLVGCMENEGFEVLS-- 128

Query: 111  NNLKMLDLSGNAFNNN--VLSSL-ARLSSLRSLYLSDNRL-EGSIDVKELDS-LRDLEEL 165
            + L  LDL  N F N+  +LS     LS+L+SL LS N L  GS  +K L S L+ LE L
Sbjct: 129  SKLSNLDLRVNKFTNDKSILSCFNGNLSTLKSLDLSFNGLTAGSGGLKVLSSRLKKLENL 188

Query: 166  DIGGNKIDK--FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLV 223
             +  N+ +   F    G S LKSL LSG    G+                          
Sbjct: 189  LLRENQYNDSIFPSLTGFSSLKSLYLSGNQLTGS-------------------------- 222

Query: 224  VPQGLERLS-RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDS 282
               GL+ LS RL KL+ L L    CN+SI  S+   SSL SL+LS N L GS        
Sbjct: 223  ---GLKDLSSRLKKLENLHLSEIQCNDSIFPSLTGFSSLKSLYLSGNQLTGSGFEIISSH 279

Query: 283  LSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHL 342
            L  LE LD++ N I N  +    RGL  LKSL+LSG      N LL S            
Sbjct: 280  LGKLENLDLSHNNIFNDSILSHLRGLSHLKSLNLSG------NMLLGS------------ 321

Query: 343  ESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVL 402
                     TT   L N               + +LQS+ S +PSLK LS+        L
Sbjct: 322  ---------TTINGLRN---------------LDILQSLRS-WPSLKTLSLKDTN----L 352

Query: 403  SGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL-GTNSSRILDQG 461
            S   F +  +LE L +    + +N  FLQ  G ++P+LK LS++   L GT    +  QG
Sbjct: 353  SQGTFFNSSTLEELHLDNTSLPIN--FLQNTG-ALPALKVLSVAECDLHGT----LPAQG 405

Query: 462  LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 521
             C L +L++L +  N+  G+LP CL N +SL++LDVS NQ TG+I+  PL  L S+E L 
Sbjct: 406  WCELKNLKQLDLARNNFGGALPDCLGNLSSLQLLDVSDNQFTGNIAFGPLTKLISLEFLS 465

Query: 522  LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD-- 579
            LSNN F +P+S++P  NHS LK F ++NN +  E     +L PKFQL    LSS+     
Sbjct: 466  LSNNLFEVPISMKPFMNHSSLKFFSSENNRLVTESAAFDNLIPKFQLVFFRLSSSPTSEA 525

Query: 580  -SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHS 638
             +V    FLY+Q++L+  +LSH  + G FP+WLL+NNT++E LYL  +S  G  +L  H 
Sbjct: 526  LNVEILDFLYYQYDLRTLDLSHNNIFGMFPSWLLKNNTRMEQLYLSENSFVGTLQLLDHP 585

Query: 639  HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 698
            +  +  LD+SNNN  G IP +I  I P+L    ++ N   G IPS  GN   L FLDLSN
Sbjct: 586  YPNMTELDISNNNINGQIPKDICLIFPNLWILRMADNGFTGYIPSCLGNFSSLSFLDLSN 645

Query: 699  NKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ-S 757
            N+L+    + L      ++ L LSNNSL G I + +F+    ++L L GN+F G+I    
Sbjct: 646  NQLSTVKLEQLT----TIQVLKLSNNSLGGQIPTSVFNSSISQYLYLGGNYFWGQISDFP 701

Query: 758  LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 817
            L        L L+NN  SG +PR   N    + + + KN  +GPIP +FC+LD L+ LD+
Sbjct: 702  LYGWKVWSVLDLSNNQFSGMLPRSFFNFTYDEVLDLSKNLFKGPIPRDFCKLDRLEFLDL 761

Query: 818  SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 877
            SDN +SG +PSCF P  I  +HLSKN L G L  G F+N SSLVT+DL  N   GSIP+W
Sbjct: 762  SDNYLSGYMPSCFNPPQITHIHLSKNRLSGPLTYG-FYNSSSLVTMDLRDNSFIGSIPNW 820

Query: 878  IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 937
            I  LS LS L L  NN +GE+ +QLC L QL +LD+S N L G +PSC  N TL E   N
Sbjct: 821  IGNLSSLSVLLLRANNFDGELAVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTLKEIPEN 880

Query: 938  NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 997
                             +GS               I ++  G+VLS + G+DLS N  VG
Sbjct: 881  ----------------ARGS--------------RIWFSVMGKVLSYMYGIDLSNNNFVG 910

Query: 998  HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 1057
             IPP+ GNL++I +LNLSHNNLTG+IP TFSNL+ IESLDLSYN L+G IP QL ++ TL
Sbjct: 911  AIPPEFGNLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGAIPPQLTEITTL 970

Query: 1058 AIFIVAYNNLSGKIPEWTAQFATF-NKSSYDGNPFLCGLPLP--ICRSLATMSEASTSNE 1114
             +F VAYNNLSG+ PE   QF TF +++ Y+GNPFLCG PL          +       +
Sbjct: 971  EVFSVAYNNLSGRTPERKYQFGTFDDENCYEGNPFLCGPPLRNNCSEEAVPLQPVPNDEQ 1030

Query: 1115 GDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1170
            GDD  IDM+ F+I+F + Y +V+  I  VLY+NPYWRRRW Y +E  I +CYYFV+
Sbjct: 1031 GDDGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWSYFIEDCINTCYYFVV 1086

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/766 (50%), Positives = 514/766 (67%), Gaps = 25/766 (3%)

Query: 402  LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 461
            +  Q  P+F++LE L +   +I L  SFLQ +G  M SLK LSLSG  L      +  QG
Sbjct: 168  IQAQDLPNFENLEELYLD--KIELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNV--QG 222

Query: 462  LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 521
            LC L HL+ L + +N+  G LPWCL+N TSL++LD+S NQ  G IS+SPL  L S+ +L 
Sbjct: 223  LCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLD 282

Query: 522  LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 581
            +SNNHF++P SL P FNHS LK    +NN I  E  E HS  P+FQL S+ + S YG   
Sbjct: 283  VSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLEA-ELHS-APRFQLISI-IFSGYGICG 339

Query: 582  TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 641
            TFP FLYHQ+ L+  +LSH+ + GEFPNWLL NNT+LE L LVN+SL+G  +LP+H H  
Sbjct: 340  TFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVN 399

Query: 642  LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 701
            L  LD+SNN+   HIP+EIG  LP L   N+S N  DGSIPSSFGN+  L+ LDLSNN+L
Sbjct: 400  LLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQL 459

Query: 702  TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 761
            +G IP+HLA  C +L  L LSNNSL+G +FS+ F+L NL WL L+ NHF G IP+SLSK 
Sbjct: 460  SGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK- 518

Query: 762  SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 821
            S+L  + L++N+LSG IP W+GNL  LQ++++  N L+GPIPVEFC+L  L++LD+++N+
Sbjct: 519  SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNS 578

Query: 822  ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 881
            +SG LPSC  P SI  VHLS+NM+ G      F     LVTLDLS N + G IP  I G+
Sbjct: 579  VSGILPSCLSPSSIIHVHLSQNMIEGPWTNA-FSGSHFLVTLDLSSNRITGRIPTLIGGI 637

Query: 882  SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSP 941
            + L  LNL  N  +GE+P Q+C L QL L+ L+DNNL G IPSC     L    +++ +P
Sbjct: 638  NALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSC-----LQLDQSDSLAP 692

Query: 942  DKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP 1001
            D P   +        +     +    FTTK  +Y+YQG++LS ++G+D SCNKL G IPP
Sbjct: 693  DVPPVPN------PLNPYYLPVRPMYFTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPP 746

Query: 1002 QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 1061
            ++GN + I +LNLS+N  TG IP TFSNL+ IESLDLSYN L+G IP QL++L  L+ F 
Sbjct: 747  EMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFS 806

Query: 1062 VAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC---RSLATMSEASTSNEGDDN 1118
            VA+NNL GK P+ T QFATF  SSY+GNP LCGLPLP     R  ++   AS  +E + N
Sbjct: 807  VAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDE-ESN 865

Query: 1119 LIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITS 1164
             +DM++F+ +F +SY  VI G+ +VLY+NP WRR W   V++ I+S
Sbjct: 866  FLDMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  636 bits (1641), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 380/810 (46%), Positives = 512/810 (63%), Gaps = 56/810 (6%)

Query: 388  LKNLSMSGCEVNGVLSGQGFPH---FKSLEHLDMRFARIALNT-SFLQIIGESMPSLKYL 443
            L  L + G E+    +  GF        LE L++ F +I  +T SFL    E + SLK+L
Sbjct: 2    LVELRLGGNEIQNFATSTGFERSLRLNKLEILELSFNKINDSTLSFL----EGLSSLKHL 57

Query: 444  SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT 503
            +L  + L      I  +GLC L  LQEL I  NDL G LP CL N  +L++LD+SFN  +
Sbjct: 58   NLDNNQL---KGSIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFS 113

Query: 504  GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLT 563
            G+IS S +  LTSI +L+LS+NHF+IP+SL P FN S LK  +  +NEI       H+L 
Sbjct: 114  GNISLSRIGSLTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLI 173

Query: 564  PKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 623
            P+FQL+ LSL+  +G   TFPKFLY+QH+L+  +LSHIK+IGEFP+WLL+NNTKLE LYL
Sbjct: 174  PRFQLQRLSLAC-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYL 232

Query: 624  VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS 683
            VN SL+G  +LP  SH  L  LD+S N+ Q  IP +IG   P L + N+S N   GSIPS
Sbjct: 233  VNSSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPS 292

Query: 684  SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 743
            S  N+  L  LDLSNN L+G IP+ L   C++L  L LSNN LKG  F R F+L  L  L
Sbjct: 293  SISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDL 352

Query: 744  LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 803
            +L GN   G +P SLS  S L+ L ++ NNLSGKIPRW+G +  LQ++ + +N+L G +P
Sbjct: 353  ILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLP 412

Query: 804  VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 863
              FC   ++                        +V+LSKN L G L  G    C SL  L
Sbjct: 413  SSFCSSRTM-----------------------TEVYLSKNKLEGSLI-GALDGCLSLNRL 448

Query: 864  DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP 923
            DLS+NY  G IP+ I  L +LS L L +NNLEG++P QLC+L +L L+DLS N+L G I 
Sbjct: 449  DLSHNYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHIL 508

Query: 924  SCFD---------NTTLHESYNNNSSPDKPFKTSFSISGPQG-SVEKKILEIFEFTTKNI 973
             C            T+L+ S N+    ++  +  F +   +  S+ K +    EFTTK+I
Sbjct: 509  PCLQPTSKWQRERETSLNPSGNSLGRENRGPQIVFPVPAVEDPSMNKSV----EFTTKSI 564

Query: 974  AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 1033
            +Y+++G +L  ++G+DLSCN L G IP ++GNL+ IQ LNLSHN+LTG IP TFSNL+ I
Sbjct: 565  SYSFKGIILKYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEI 624

Query: 1034 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 1093
            ESLDLSYN L+G+IPRQL+DLN L+ F VA+NNLSGK PE  AQF+TFNKS Y+GNP LC
Sbjct: 625  ESLDLSYNNLNGEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLC 684

Query: 1094 GLPLP--ICRSL--ATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPY 1149
            G PL     R+L  + +  + T  + ++ +IDM++F +TF+++Y++V+  I  VLY+NP 
Sbjct: 685  GPPLARNCTRALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPR 744

Query: 1150 WRRRWLYLVEMWITSCYYFVIDNL-IPTRF 1178
            WRR W Y +   I +CYYF++DNL +P RF
Sbjct: 745  WRRAWFYFIGESINNCYYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 408/945 (43%), Positives = 558/945 (59%), Gaps = 75/945 (7%)

Query: 261  LTSLHLSHNILQGSIDAKEFDSLS-NLEELDINDNEIDNVE-VSRGYRGLRKLKSLDLSG 318
            L SL L  N L G ++ + F+ LS NL  LD++DN  +N + +     GL  LKSLDLSG
Sbjct: 99   LQSLELRFNGLVGCLENEGFEVLSSNLRNLDLSDNRFNNDKSILSCMTGLSTLKSLDLSG 158

Query: 319  VGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISL 377
             G+          GS   + + HLE            +L N  +L Y   +DS L H+  
Sbjct: 159  NGL---------TGSGFEIISSHLE------------KLDNL-DLSYNIFNDSILSHLRG 196

Query: 378  LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM 437
            L         LK+L++SG  + G  +  G   F S    ++   R +L  +FLQ IG ++
Sbjct: 197  LSY-------LKSLNLSGNMLLGSTTVNG-TFFNSSTLEELYLDRTSLPINFLQNIG-AL 247

Query: 438  PSLKYLSLSGSTL-GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILD 496
            P LK LS++   L GT    +  QG C L +L++L +  N+L GSLP CL N +SL++LD
Sbjct: 248  PDLKVLSVAECDLHGT----LPAQGWCELKNLRQLDLSGNNLGGSLPDCLGNLSSLQLLD 303

Query: 497  VSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEI 556
            VS NQ TG+I+S PL +LTS+E L LSNN F +P+S++P  NHS LK F ++NN++  E 
Sbjct: 304  VSENQFTGNIASGPLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNKLVTEP 363

Query: 557  NESHSLTPKFQLKSLSLS-SNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 615
                +L PKFQL    LS +    +V  P FLY+Q++++  +LSH  +   FP+WLL+NN
Sbjct: 364  AAFDNLIPKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNN 423

Query: 616  TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 675
            T+LE LYL N+S  G  +L  H +  +  LD+SNNN  G IP +I  I P++    ++ N
Sbjct: 424  TRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANN 483

Query: 676  ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF 735
               G IPS  GN+  L+ LDLSNN+L+    + L      + FL LSNN+L G + + +F
Sbjct: 484  GFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLTT----IWFLKLSNNNLGGQLPTSVF 539

Query: 736  SLRNLRWLLLEGNHFVGEIPQSLSKCSSL-KGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794
            +   L +L L GN+F G+I   L     +   L L++N  SG +PRWL N  GL  I + 
Sbjct: 540  NSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLS 599

Query: 795  KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 854
            KN+ +GPI  +FC+L+ L+ LD+S+NN+SG +PSCF P  I  VHLS+N L G L  G F
Sbjct: 600  KNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYG-F 658

Query: 855  FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 914
            +N SSLVT+DL  N   GS P+WI  LS LS L L  N+ +GE+P+QLC L QL +LD+S
Sbjct: 659  YNNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVS 718

Query: 915  DNNLHGLIPSCFDNTTLHESYNNNSS-------PDKPFKTSFSISGP----------QGS 957
             N L G +PSC  N T  ES     +            K  +   GP          +G 
Sbjct: 719  QNQLSGPLPSCLGNLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYNLRKGF 778

Query: 958  VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 1017
            +     E+ EFTTKN+ Y Y+G+ LS ++G+DLS N  VG IPP+ G+L++I +LNLSHN
Sbjct: 779  LLNFTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHN 838

Query: 1018 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077
            NLTG+IP TFSNL+ IESLDLSYN L+G IP QL D+ TL +F VA+NNLSG  PE   Q
Sbjct: 839  NLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQ 898

Query: 1078 FATFNKSSYDGNPFLCGLPL------------PICRSLATMSEASTSNEGDDNLIDMDSF 1125
            F TF++S Y+GNPFLCG PL            P+              +GDD  IDM+ F
Sbjct: 899  FGTFDESCYEGNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEFF 958

Query: 1126 FITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1170
            +I F + Y +V+  IVVVLY++PYWRRRW Y +E  I +CYYFV+
Sbjct: 959  YINFGVCYTVVVMIIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 433/1150 (37%), Positives = 617/1150 (53%), Gaps = 95/1150 (8%)

Query: 83   QQLESLDLSWNNIAGCAENEGLEGLSRLN------NLKMLDLSGNAFNNNVLSSLARLSS 136
            + L+ LDLS NN   C +      +   N      +L+ LDLS N       S L + ++
Sbjct: 182  KNLKQLDLSGNNFGACQKQRKHFNVEIPNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNT 241

Query: 137  -LRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLS----KLKSLGLSG 191
             L  LYLS N + G++ +++      + ELDI  N +    + K +      L  L ++ 
Sbjct: 242  RLEQLYLSGNSIVGTLQLQD-HPYPKMTELDISNNNMSG-QIPKDICLIFPNLDGLRMAK 299

Query: 192  TGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI 251
             GF G        + ++L VLD+S N++  +       +L  L+ +  L L  N     I
Sbjct: 300  NGFTGCIP-SCLGNMSSLGVLDLSNNQLSTV-------KLELLTTIWFLKLSNNNLGGQI 351

Query: 252  LSSVARLSSLTSLHLSHNILQGSID------------------------AKEFDSLSNLE 287
             +S+   S+   L+L  N   G I                          + F + +NL 
Sbjct: 352  PTSMFNSSTSEYLYLGDNNFWGQISDSPLNGWKTWIVLDLSNNQFSGILPRWFVNSTNLI 411

Query: 288  ELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 347
             +D++ N  +       +  L +L+ LDLS   +      + S  + P +  +HL  N  
Sbjct: 412  AIDLSKNHFEGPISRHFFCKLDQLEYLDLSENNLFG---YIPSCFNSPQITHVHLSKNRL 468

Query: 348  TATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 407
            +  L    E +N ++L  + L D+S   S+   +G++      L  +             
Sbjct: 469  SGPLK--YEFYNSSSLVTMDLRDNSFTGSIPNWVGNLSSLSVLLLRAN------------ 514

Query: 408  PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 467
             H    + L MR  ++         +  S+ S+     S  +L  +++     G C + +
Sbjct: 515  -HLDGFQLLPMRLGKLENLCLGGNQLNSSILSILSGLSSLKSLDLSNNMFTGSGWCEMKN 573

Query: 468  LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 527
            L++L +  N+  GSLP CL N +SL++LD+S NQ TG+I+ SPL +L S+E L LSNN F
Sbjct: 574  LKQLDLSGNNFGGSLPDCLGNLSSLQLLDISENQFTGNIAFSPLTNLISLEFLSLSNNLF 633

Query: 528  RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLS-SNYGDSVTFPKF 586
             +P S++P  NHS LK F  +NN +  E      L PKFQL   SLS +    +V  P F
Sbjct: 634  EVPTSMKPFMNHSSLKFFCNENNRLVIEPAAFDHLIPKFQLVFFSLSKTTEALNVEIPNF 693

Query: 587  LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLD 646
            LY+Q+ L+  +LSH  + G FP+WLL+NNT+LE LYL  +S+ G  +L  H + ++  LD
Sbjct: 694  LYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQDHPYPKMTELD 753

Query: 647  VSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP 706
            +SNNN  G IP +I  I P+L    ++ N   G IPS  GN+  L  LDLSNN+L+    
Sbjct: 754  ISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSLGVLDLSNNQLSTVKL 813

Query: 707  DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS-LSKCSSLK 765
            + L      + FL LSNN+L G I + +F+     +L L  N+F G+I  S L+   +  
Sbjct: 814  ELLTT----IWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISDSPLNGWKTWI 869

Query: 766  GLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF-CRLDSLQILDISDNNISG 824
             L L+NN  SG +PRW  N   L  I + KNH EGPI   F C+LD L+ LD+S+NN+ G
Sbjct: 870  VLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEYLDLSENNLFG 929

Query: 825  SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL 884
             +PSCF    I  VHLSKN L G LK   F+N SSLVT+DL  N   GSIP+W+  LS L
Sbjct: 930  YIPSCFNSPQITHVHLSKNRLSGPLKY-EFYNSSSLVTMDLRDNSFTGSIPNWVGNLSSL 988

Query: 885  SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS---- 940
            S L L  N+L+GE+P+QLC L QL +LD+S N L G +PSC +N T  ES          
Sbjct: 989  SVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENLTFKESSQKALMNLGG 1048

Query: 941  ---PDKPFKTSFSISGP----------QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 987
               P    K    I GP          +G       E+ EFTTKN+ Y Y+G++LS ++G
Sbjct: 1049 FLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTEEVIEFTTKNMYYGYKGKILSYMSG 1108

Query: 988  LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
            +DLS N  VG IPP+ GNL+ I +LNLSHNNLTG+IP TFSNL+ IESLDLSYN  +G I
Sbjct: 1109 IDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKRIESLDLSYNNFNGDI 1168

Query: 1048 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL------PICR 1101
            P QL ++ TL +F VA+NNLSGK PE   QF TF++S Y+GNPFLCG PL       +  
Sbjct: 1169 PPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEVVL 1228

Query: 1102 SLATMSEASTSNEG-DDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEM 1160
            S   +S+   ++E  DD  IDM+ F+I+F++ Y +V+  I  VLY+NPYWRRRWLY +E 
Sbjct: 1229 SQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMTIAAVLYINPYWRRRWLYFIED 1288

Query: 1161 WITSCYYFVI 1170
             I +CYYFV+
Sbjct: 1289 CIDTCYYFVV 1298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  614 bits (1583), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 399/930 (42%), Positives = 561/930 (60%), Gaps = 38/930 (4%)

Query: 261  LTSLHLSHNILQ--GSIDAKEFD-SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS 317
            L  L+LS N+L   G  D  E    L+NLE LD+++N +D   ++               
Sbjct: 545  LKILNLSTNMLVTLGDDDGSERPFKLNNLELLDLSNNTLDISILAS--LTELSSLKSLSL 602

Query: 318  GVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISL 377
            G  I +G+  +Q + +  +L  L L  N+  + +TTT  L +   L  L L+ +  +IS 
Sbjct: 603  GTNILEGS--IQELAALHNLEELDLSKNDLESFITTTG-LKSLRKLRVLHLETNDFNIST 659

Query: 378  LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM 437
            L+S+G +   LK L + G ++ G ++ +   + ++LE LD+    I+  +S LQI+ E M
Sbjct: 660  LKSLGRL-SLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNIS--SSILQIV-EVM 715

Query: 438  PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 497
             SLK LSL  +  G N S+   QGLC L +LQEL + +N   GS+  CL N TSLR LD+
Sbjct: 716  TSLKALSLRSN--GINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDL 773

Query: 498  SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD--AKNNEINGE 555
            S N+ +G++ SS    L  +E L LS+N F+    +     HSKL++ D    NN +  E
Sbjct: 774  SKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLE 833

Query: 556  INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 615
             +E  +  P FQLK   LSS    + + P FL++QH+L+  +LS+  +  +FP WL++NN
Sbjct: 834  -SEDQTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNN 892

Query: 616  TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 675
            T+LE L L N+SL G F LP   +     +D+SNN  QG +P  I   LP+L++ N+S N
Sbjct: 893  TRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRN 952

Query: 676  ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF 735
            + +GSIPS FG +  L FLDLSNN  TG IP+ LAM C +LE+L LS N L G +F R+ 
Sbjct: 953  SFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVS 1011

Query: 736  SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795
            +L +LR L L+ NHF G+IP  LS  S L+ LY+++N++SGK+P W+GN+  L  +VMP 
Sbjct: 1012 NLPSLRHLELDDNHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPN 1070

Query: 796  NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFF 855
            N LEGPIPVEFC LD+L++LD+S+NN+SGSLPSCF P  +  VHL +N L G L +  F 
Sbjct: 1071 NSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKA-FT 1129

Query: 856  NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 915
                L TLD+  N L+G IPDWI   S LS L L  N+ +G++P QLC+L+++ +LDLS 
Sbjct: 1130 RSMDLATLDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSY 1189

Query: 916  NNLHGLIPSCFDNTTLHESYNNNSS------PDKPFKT----SFSISGPQGSVEKKILE- 964
            N+L G IPSC +       + +         P   F +    S  I   Q +V    +  
Sbjct: 1190 NSLSGHIPSCLNKIQFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAY 1249

Query: 965  ---IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 1021
               + EFTTKN    Y+G  L  + G+DLS NKL G IPP+IGNL+++  LNLSHN LTG
Sbjct: 1250 DKAMAEFTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTG 1309

Query: 1022 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATF 1081
             IP  FS L+ IESLDLSYN L+G IP +L +L  LA+F VAYNNLSGKIPE TAQF TF
Sbjct: 1310 PIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTF 1369

Query: 1082 NKSSYDGNPFLCG-LPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGI 1140
             ++SY GNP+LCG L    C      +E     +G   L D D F+++F  SYV+V+ G+
Sbjct: 1370 LENSYVGNPYLCGSLLRKNCSRAEEEAEIEEGEKG---LTDRDIFYVSFGASYVVVLLGV 1426

Query: 1141 VVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1170
              VLY+N  WR++W +++++ IT C  FV+
Sbjct: 1427 AAVLYINGGWRKKWFHVIDVLITCCCNFVM 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  613 bits (1581), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 409/975 (41%), Positives = 559/975 (57%), Gaps = 88/975 (9%)

Query: 229  ERLSRLSKLKKLDLR-GNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSN-L 286
            +R+ +LS     D R G+   N+ L        L SL L +N L G ++ + F  LS+ L
Sbjct: 39   KRVIQLSLFDARDFRLGDWVLNASL--FLPFKELQSLDLGYNGLVGCLENEGFQVLSSKL 96

Query: 287  EELDINDNEIDNVE-VSRGYRGLR-------KLKSLDLSGVGIRDGNKLLQSMGSFPSLN 338
             EL ++DN  +N + +   + GL+       KL++LDLSG    D   +  ++  F SL 
Sbjct: 97   RELGLSDNRFNNDKSILSCFNGLKVLSSRLKKLENLDLSGNQCND--TIFPALTGFSSLK 154

Query: 339  TLHLESNNFTAT-LTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE 397
            +L L  N  TA+ L     L +  +L+ L+L D++L      S G+ F S          
Sbjct: 155  SLDLSGNQLTASGLRKLDFLQSLRSLKTLSLKDTNL------SQGTFFNS---------- 198

Query: 398  VNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL-GTNSSR 456
                          +LE L +    + +N  FLQ    ++P+LK LS+    L GT    
Sbjct: 199  -------------STLEELHLDNTSLPIN--FLQNT-RALPALKVLSVGECDLHGT---- 238

Query: 457  ILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 516
            +  QG C L +L++L +  N+  G+LP CL N +SL +LDVS NQ TG+I S PL +L S
Sbjct: 239  LPAQGWCELKNLKQLDLARNNFGGALPDCLGNLSSLTLLDVSENQFTGNIVSGPLTNLVS 298

Query: 517  IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSL-SS 575
            +E L LSNN F +P S++P  NHS LK F ++NN +  E     +L PKFQL  LSL  +
Sbjct: 299  LEFLSLSNNLFEVPTSMKPFMNHSSLKFFSSENNRLVTEPAAFDNLIPKFQLVFLSLLKT 358

Query: 576  NYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP 635
                +V  P FLY+Q++L+  +LSH  + G FP+WLL+NNT++E L L ++S  G  +LP
Sbjct: 359  TEALNVHIPDFLYYQYDLRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLP 418

Query: 636  IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 695
             H +  +  LD+SNNN    IP +I  ILP+L    +  N   G IPS  GN+  L  LD
Sbjct: 419  DHPYPNMTKLDISNNNMNSQIPKDICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLD 478

Query: 696  LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP 755
            LSNN+L+    + L      L FL LSNN+L G I   +F+   L +L L GN+F G+I 
Sbjct: 479  LSNNQLSTVKLELLT----TLMFLKLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQIL 534

Query: 756  Q-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF-CRLDSLQ 813
              SL +      L L+NN  SG +PRW  N   L+ I + KNH +GPIP +F C+ D L+
Sbjct: 535  YLSLYEQKMWFVLDLSNNQFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLE 594

Query: 814  ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 873
             LD+S+NN+SG +PSCF P  I  +HLSKN L G L  G F+N SSLVT+DL  N    S
Sbjct: 595  YLDLSENNLSGYIPSCFSPPQITHLHLSKNRLSGPLTYG-FYNSSSLVTMDLQDNSFTDS 653

Query: 874  IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 933
            IP+WI  LS LS L L  N+ +           QL +LD+S N L G +PSC  N T  E
Sbjct: 654  IPNWIGNLSSLSVLLLRANHFD----------EQLSILDVSQNQLSGPLPSCLGNLTFKE 703

Query: 934  SYNNNSSPDKPF-------KTSFSISGP---------QGSVEKKILEIFEFTTKNIAYAY 977
            S          F       KT +   GP         +G     I E+ EFTTK ++Y Y
Sbjct: 704  SSQKAILDFVIFDISRSIEKTYYETMGPPLVDSVYLGKGFGLNLIEEVIEFTTKKMSYGY 763

Query: 978  QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037
            +G+VL+ ++G+DLS N  VG IPP+ GNL+ I +LNLSHNNLTG+IP TFSNL+ IESLD
Sbjct: 764  KGKVLNYMSGIDLSNNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKQIESLD 823

Query: 1038 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 1097
            LSYN L+G IP QL ++ TL +F VA+NNLSGK PE   QF TF++S Y+GNPFLCG PL
Sbjct: 824  LSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPL 883

Query: 1098 P-ICRSLATMSEASTSNE-GDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWL 1155
               C   A  S+   ++E GDD  +DM+ F+I+F + Y +V+  I  VLY+NPYWRRRWL
Sbjct: 884  RNNCSEEAVSSQPVPNDEQGDDGFVDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWL 943

Query: 1156 YLVEMWITSCYYFVI 1170
            + +E  I +CYYF +
Sbjct: 944  FFIEDCIDTCYYFGV 958

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1565), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 364/819 (44%), Positives = 492/819 (60%), Gaps = 40/819 (4%)

Query: 376  SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG-FPHFKSLEHLDMRFARIALNTSFLQIIG 434
            S+L        +LK+L +S    NG+ +G G F +  +LE L +    + +N  FLQ IG
Sbjct: 140  SILSCFNGNLSTLKSLDLSA---NGLTAGSGTFFNSSTLEELYLDNTSLRIN--FLQNIG 194

Query: 435  ESMPSLKYLSLSGSTL-GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 493
             ++P+LK LS++   L GT    +  QG C L +L++L +  N+  GSLP CL N +SL+
Sbjct: 195  -ALPALKVLSVAECDLHGT----LPAQGWCELKNLKQLDLARNNFGGSLPDCLGNLSSLQ 249

Query: 494  ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 553
            +LDVS NQ TG+ +S PL +L S+E L LSNN F +P+S++P  NHS LK F ++NN + 
Sbjct: 250  LLDVSENQFTGNFTSGPLTNLISLEFLLLSNNLFEVPISMKPFLNHSSLKFFSSENNRLV 309

Query: 554  GEINESHSLTPKFQLKSLSLSSNYGDSV--TFPKFLYHQHELKEAELSHIKMIGEFPNWL 611
             E     +L PKFQL    LSS+         P FLY+Q +L+  +LSH  + G FP+WL
Sbjct: 310  TEPVAFDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWL 369

Query: 612  LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 671
            L+NNT+LE LYL  +   G  +L  H +  +  LD+SNNN  G I  +I  I P+L    
Sbjct: 370  LKNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLR 429

Query: 672  ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 731
            ++ N   G IPS  GN+  L FLDLSNN+L+    + L      +  L LSNNSL G I 
Sbjct: 430  MAKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQLT-----IPVLKLSNNSLGGQIP 484

Query: 732  SRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 790
            + +F+    ++L L GN+F G+I    L     L  L L+NN  SG +PR   N   L+ 
Sbjct: 485  TSVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRV 544

Query: 791  IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK 850
            + + KNH +GPIP +FC+L  LQ LD+S+NN+SG +PSCF P  +  VHLSKN L G L 
Sbjct: 545  LDLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLT 604

Query: 851  EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL 910
             G FFN S LVT+DL  N L GSIP+WI   S LS L L  N+ +GE+P+QLC L QL +
Sbjct: 605  YG-FFNSSYLVTMDLRDNSLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSI 663

Query: 911  LDLSDNNLHGLIPSCFDNTTLHESYNNNSSP-------DKPFKTSFSISGPQGSVEKKIL 963
            LD+S N L G +PSC  N T  ES              +   K  +   GP       +L
Sbjct: 664  LDVSQNQLSGPLPSCLGNLTFKESSQKARMDLGASIVLESMEKAYYKTMGPPLVDSVYLL 723

Query: 964  ----------EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 1013
                      E+ EF TKN+ Y Y+G +LS ++G+DLS N   G IP + GNL+ I++LN
Sbjct: 724  GKDFRLNFTEEVIEFRTKNMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLN 783

Query: 1014 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073
            LSHNN T +IP TFSNL+ IESLDLSYN L+G IP QL ++ TL +F VA+NNLSG  PE
Sbjct: 784  LSHNNPTESIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPE 843

Query: 1074 WTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSN--EGDDNLIDMDSFFITFTI 1131
               QF TF++S Y+GNPFLCG PL    S+  +S     +  +GD   IDM+ F+I+F +
Sbjct: 844  RKYQFGTFDESCYEGNPFLCGPPLRNNCSVEPVSSQPVPDDEQGDVGFIDMEFFYISFGV 903

Query: 1132 SYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1170
             Y +V+  I  VLY+NPYWRRRWLY +E  I +CYYF++
Sbjct: 904  CYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFMV 942

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124626|ref|XP_002330070.1| predicted protein [Populus trichocarpa] gi|222871495|gb|EEF08626.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1564), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 465/1199 (38%), Positives = 636/1199 (53%), Gaps = 179/1199 (14%)

Query: 1    MFVLLLIIFGG--GWSEGCLDHERFALLRLKHFFTDP-------YDKGATDCCQWEGVEC 51
            M + LL + G   G   GCL+ ER  LL +K  F DP       + + +++CC+W G+EC
Sbjct: 5    MLLALLTLVGDWCGRCYGCLEEERIGLLEIKPLF-DPNSIYMRDWVEYSSNCCEWYGIEC 63

Query: 52   SNTTGRVIGLYLSETYS---GEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLS 108
             NTT RVI L L +      G+ W LNASLF PF++L+SLDLS+N + GC+ENEG E   
Sbjct: 64   DNTTRRVIHLSLWDATDFLLGD-WVLNASLFLPFKELQSLDLSFNGLVGCSENEGFE--- 119

Query: 109  RLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDS-LRDLEELDI 167
                  +L     AF      +    S+L+SL LSDN+L GS  +K L S L+ LE L +
Sbjct: 120  ------VLPSKAGAF----FHASTGFSALKSLDLSDNQLTGS-GLKVLSSRLQKLENLHL 168

Query: 168  GGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQG 227
             GN+ +  + S           S TGF            ++L+ LD+S NE+       G
Sbjct: 169  SGNQCNDSIFS-----------SITGF------------SSLKSLDLSYNELTG----SG 201

Query: 228  LERLS-RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNL 286
            L+ LS RL KL+ L L GN CN+SI SS+   SSL SL LS+N + GS        L  L
Sbjct: 202  LKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDLSYNEVTGSGLKVLSSKLKKL 261

Query: 287  EELDINDNEIDNVEV----------------------SRG-------YRGLRKLKSLDLS 317
            E LD++DN+ ++                         S G         GLR L+ L L 
Sbjct: 262  ENLDLSDNQCNDSIFSSLSGFSSLKYLNLSQNQLTGSSTGINSFQVLVSGLRNLEELHLY 321

Query: 318  GVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISL 377
               +   N +L S+  F +L +L L  N FT +      L+   NLE L L ++    S+
Sbjct: 322  SNKLN--NNILSSLSGFSTLKSLDLSDNMFTGS----TGLNGLRNLETLYLGNTDFKESI 375

Query: 378  L-QSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGES 436
            L +S+G++ PSLK L  S    N    G+G  +  SLE + +  +  +L  SFL+ IG  
Sbjct: 376  LIESLGAL-PSLKTLDAS--YSNFTHFGKGLCNSSSLEEVFLDDS--SLPASFLRNIGP- 429

Query: 437  MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILD 496
            + +LK LSL+G      +S +  QG C L +L+ELY+  N+L+G LP CL N + L+ILD
Sbjct: 430  LSTLKVLSLAGVDF---NSTLPAQGWCELKNLEELYLSGNNLKGVLPPCLGNLSFLQILD 486

Query: 497  VSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEI 556
            +S NQL G+I+ S L HL  +  L + NN+F++P+S     N S LK+    NNE+    
Sbjct: 487  LSHNQLEGNIAFSYLSHLKQLRSLSIKNNYFQVPISFGSFMNLSNLKLIACDNNELIAAP 546

Query: 557  NESHSLTPKFQLKSLSLSSNYGDSVT--FPKFLYHQHELKEAELSHIKMIGE-FPNWLLE 613
            +   S  PKFQL   S S+     +   F  FL+ Q++L   +LSH K +GE FP+WL E
Sbjct: 547  SFQPS-APKFQLLFFSASNCTPKPLKAGFTNFLHSQYDLMFVDLSHNKFVGEPFPSWLFE 605

Query: 614  NNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNIS 673
            NN KL  LYL + S+ GP +LP H    L+ +D+S N   G I   I  I P L  F ++
Sbjct: 606  NNRKLNRLYLRDTSITGPLQLPQHPTPYLQTVDISGNTIHGQIARNICSIFPRLKNFLMA 665

Query: 674  MNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSR 733
             N+L G IP  FGN+  L+FLDLSNN ++ E+ +H      NL   +++   ++      
Sbjct: 666  NNSLTGCIPRCFGNMSSLEFLDLSNNHMSCELLEH------NLPTWAITTICVQ------ 713

Query: 734  IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG--LQHI 791
                           H +  +P S  K    +    +NN LSG +PR +GN     L  I
Sbjct: 714  ---------------HDLPTLPPSRWKQICRRST--SNNLLSGMLPRGIGNSSKNQLDGI 756

Query: 792  VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE 851
             + +NH E                D+S+NN+SGSLP  F+ L ++ VHL  N L G L  
Sbjct: 757  DLSRNHFE----------------DLSENNLSGSLPLGFHALDLRYVHLYGNRLSGPLPY 800

Query: 852  GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL 911
              F+N SSLVTLDL  N L G IP+WID LS+LS   L  N   G++P QLC L +L +L
Sbjct: 801  -DFYNLSSLVTLDLGDNNLTGPIPNWIDSLSELSIFVLKSNQFNGKLPHQLCLLRKLSIL 859

Query: 912  DLSDNNLHGLIPSCFDNTTLHESYNNNS-SPD------------------KPFKTSFSIS 952
            DLS+NN  GL+PSC  N  L  S    S  PD                  + F  S ++ 
Sbjct: 860  DLSENNFSGLLPSCLSNLNLTASDEKTSVEPDWGSRDYWSEEEMFSSMGGRGFSPSDTML 919

Query: 953  GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 1012
             P+ SV+  +    E T K   Y Y+G +L  ++ LDLSCN+  G IP + GNL+ I +L
Sbjct: 920  WPEISVKIAV----ELTAKKNFYTYEGGILRYMSALDLSCNRFTGEIPTEWGNLSGIYSL 975

Query: 1013 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072
            NLS NNLTG IP +FSNL+HIESLDLS+N L+G+IP QLV+L  LA+F V+YNNLSG+ P
Sbjct: 976  NLSQNNLTGLIPSSFSNLKHIESLDLSHNNLNGRIPAQLVELTFLAVFNVSYNNLSGRTP 1035

Query: 1073 EWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNE--GDDNLIDMDSFFITF 1129
            E   QF TF++SSY GNP LCG PL           A   N+  GD   IDM SF+ +F
Sbjct: 1036 EMKNQFGTFDESSYKGNPLLCGPPLQNSCDKTESPSARVPNDCNGDGGFIDMYSFYASF 1094

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1180
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.744	0.878	0.341	1.8e-133
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.684	0.906	0.334	1.1e-112
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.586	0.638	0.362	5.8e-105
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.725	0.887	0.294	2.8e-101
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.703	0.850	0.331	8.2e-99
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.727	0.946	0.322	4.2e-95
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.671	0.847	0.324	3.6e-89
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.683	0.644	0.284	1.6e-69
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.554	0.806	0.293	4.1e-66
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.572	0.772	0.294	3e-63

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1188 (423.3 bits), Expect = 1.8e-133, Sum P(2) = 1.8e-133
 Identities = 317/929 (34%), Positives = 476/929 (51%)

Query:   278 KEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSL 337
             K    L NLE LD++ +  +N  +         L +L L+   +     L++      +L
Sbjct:    66 KSLSRLRNLEILDLSSHRFNN-SIFPFLNAATSLTTLFLTYNNMHSPF-LVKEFKDLTNL 123

Query:   338 NTLHLESNNFTATLTTTQ--ELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 395
               L L  N F  ++ T     L  F  LE L L D+  +  +   + S   SLK+LS+ G
Sbjct:   124 EHLDLRGNRFNGSIPTQDYNSLRRFRKLEILDLSDNLFNSRIFPFLNSA-TSLKSLSLWG 182

Query:   396 CEVNGVLSGQGFPHFKSLEHLDM---RF-ARIALNTSFL--QIIGESMPXXXXXXXXXXX 449
               + G    +      ++E LD+   RF   I +   F   ++    +            
Sbjct:   183 NNMGGPFPAKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQ 242

Query:   450 XXXXXXRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 509
                   + L  G CP  +++EL + NN L G  P CL + T LR+LD+S NQLTG++ S+
Sbjct:   243 GKFAKTKPLS-GTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA 301

Query:   510 PLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF--DAKNNEINGEINESHSLTPKFQ 567
              L +L S+E L L  N+F    SL  L N SKLK+   D+++N +  E+    S  PKFQ
Sbjct:   302 -LANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSL--EVEFETSWKPKFQ 358

Query:   568 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 627
             L  ++L S   + V  P FL HQ +L   +LS  ++ G FP+WLLENNTKLE L L N+S
Sbjct:   359 LVVIALRSCNLEKV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNS 416

Query:   628 LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE-IGDILPSLVYFNISMNALDGSIPSSFG 686
                 F+LP  +H  L FL+VS N F  H+ ++  G ILP LV  N++ N   G++PSS  
Sbjct:   417 FTS-FQLPKSAHNLL-FLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLD 473

Query:   687 NVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLL-L 745
             N+  ++FLDLS+N+  G++P      C              G +F    +   L W++ +
Sbjct:   474 NMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRL-WVMSM 532

Query:   746 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE 805
             + N F G I +      SL  L ++NN L+G IP W+G  +GL  + +  N LEG IP  
Sbjct:   533 DNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTS 592

Query:   806 FCRLDSLQILDISDNNISGSLP---SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 862
                +  LQ+LD+S N +SG +P   S  Y  ++  + L  N L G + +    N   ++ 
Sbjct:   593 LFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAV--LLLQNNNLSGVIPDTLLLN---VIV 647

Query:   863 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLI 922
             LDL  N L+G++P++I+    +S L L  NN  G++P                   +G I
Sbjct:   648 LDLRNNRLSGNLPEFIN-TQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSI 706

Query:   923 PSCFDNTTL-----HESYNNN------SSPDKPFKTSFSISGPQGSVEKKILEI-FEFTT 970
             PSC  NT+       +SY  +      ++ D  +  S  +      V +   +   EF T
Sbjct:   707 PSCLSNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFAT 766

Query:   971 KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 1030
             K+   AY G  L LL G+DLS N+L G IP ++G L  ++ LNLSHNNL+G I  +FS L
Sbjct:   767 KHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGL 826

Query:  1031 RHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNP 1090
             +++ESLDLS+N+L G IP QL D+ +LA+F V+YNNLSG +P+   QF TF   SY GNP
Sbjct:   827 KNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGR-QFNTFETQSYFGNP 885

Query:  1091 FLCGLPLPICRSLATMSEASTSN--EGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNP 1148
              LCG  + I  S A+ +   T N  E D++ +DM+SF+ +F  +YV ++ GI+  L  + 
Sbjct:   886 LLCGKSIDI--SCASNNFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDS 943

Query:  1149 YWRRRWLYLVEMWITSCYYFVIDNLIPTR 1177
              W R W Y+V+ ++      +  N   T+
Sbjct:   944 PWSRAWFYIVDAFVLKVRNMLWQNTAGTK 972

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 1.1e-112, Sum P(2) = 1.1e-112
 Identities = 286/854 (33%), Positives = 429/854 (50%)

Query:   334 FPSLNTLHLESNNFTATLTTTQE---LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 390
             F  L +L+L S  F       +    L +  NLE L L  +    S+L  +     SLK 
Sbjct:    49 FEELQSLNLSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAV-SLKT 107

Query:   391 LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXX 450
             L +      G    Q   +  SLE LD++F + +      Q+  + +             
Sbjct:   108 LILHDNLFKGGFPVQELINLTSLEVLDLKFNKFSG-----QLPTQELTNLRNLRALDLSN 162

Query:   451 XXXXXRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 510
                   +  QG+C L  LQEL +  N   G +P C +  + LR+LD+S N L+G I    
Sbjct:   163 NKFSGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF- 221

Query:   511 LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESH-SLTPKFQLK 569
             +    S+E L L +N F    SL  +   ++LK+F   +     +I E++ S   + QL 
Sbjct:   222 ISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLS 281

Query:   570 SLSLSS-NYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 628
             S+ LS  N G     P FL++Q EL+  +LS+  + G FP WLLENNT+L+ L L N+S 
Sbjct:   282 SIMLSHCNLGK---IPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSF 338

Query:   629 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 688
                  LP  + +RL+ LD+S NNF   +P ++G IL SL + N+S N   G++PSS   +
Sbjct:   339 K-TLTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARM 396

Query:   689 IFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGN 748
               ++F+DLS N  +G++P +L   C              G I  +     +L  L+++ N
Sbjct:   397 ENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNN 456

Query:   749 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 808
              F G+IP++L     L  + L+NN L+G IPRWLGN   L+ + +  N L+G IP     
Sbjct:   457 MFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFN 515

Query:   809 LDSLQILDISDNNISGSLP---SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 865
             +  L +LD+S N +SGSLP   S  Y   I  +H   N L G + +  ++    L  LDL
Sbjct:   516 IPYLWLLDLSGNFLSGSLPLRSSSDYGY-ILDLH--NNNLTGSIPDTLWYG---LRLLDL 569

Query:   866 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSC 925
               N L+G+IP        +S + L  NNL G++P+                  +  IPSC
Sbjct:   570 RNNKLSGNIP-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSC 628

Query:   926 FDNTTLHESYNNNSSPD-KP------FKTSFS-------ISGPQGSVEKKI-LEI-FEFT 969
               N +     ++N+  D  P      F   ++       I   + S++  +   +  EF 
Sbjct:   629 VTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFA 688

Query:   970 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN 1029
              K     Y    L+ + GLDLS N+L G+IP ++G+L R+++LNLS N+L+G+IP +FSN
Sbjct:   689 VKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSN 748

Query:  1030 LRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGN 1089
             LR IESLDLS+NKL G IP QL  L +L +F V+YNNLSG IP+   QF TF + SY GN
Sbjct:   749 LRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGK-QFNTFGEKSYLGN 807

Query:  1090 PFLCGLPLPICRSLATMSEASTSNEGDDN-LIDMDSFFITFTISYVIVIFGIVVVLYVNP 1148
               LCG P        T+S      + D++ L+D+   + +   +YV V+ G +V L  + 
Sbjct:   808 FLLCGSPTKRSCGGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDS 867

Query:  1149 YWRRRWLYLVEMWI 1162
              WRR W  LV+ +I
Sbjct:   868 PWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 264/728 (36%), Positives = 382/728 (52%)

Query:   461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI-EE 519
             G+C L  L+EL + +N L  SLP+CL N T LR LD+S NQL G++SS  +  L S+ E 
Sbjct:   353 GICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLSNNQLNGNLSSF-VSGLPSVLEY 410

Query:   520 LRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD 579
             L L +N+F        L N ++L +F   +     ++    S  P FQLK L LS N   
Sbjct:   411 LSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLS-NCSL 469

Query:   580 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 639
               T   FL HQ +L   +LSH K+ G FP WL++NNT+L+ + L  +SL    +LPI  H
Sbjct:   470 GSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVH 528

Query:   640 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 699
               L+ LD+S+N     I  +IG + P+L + N S N   G+IPSS G +  LQ LD+S+N
Sbjct:   529 G-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSN 587

Query:   700 KLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 759
              L G++P      C             +G IFS+  +L  L  L L+GN+F G + + L 
Sbjct:   588 GLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLL 647

Query:   760 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILDIS 818
             K  +L  L +++N  SG +P W+G +  L ++ M  N L+GP P  F R    ++++DIS
Sbjct:   648 KSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFP--FLRQSPWVEVMDIS 705

Query:   819 DNNISGSLP-SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 877
              N+ SGS+P +  +P S++++ L  N   G L  G  F  + L  LDL  N  +G I + 
Sbjct:   706 HNSFSGSIPRNVNFP-SLRELRLQNNEFTG-LVPGNLFKAAGLEVLDLRNNNFSGKILNT 763

Query:   878 IDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHESYNN 937
             ID  S+L  L L +N+ +  +P                    G IPSCF   +     N+
Sbjct:   764 IDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQND 823

Query:   938 NSS--------------PDKPFKTSFSIS-GPQGSVEKKILEIFEFTTKNIAYAYQGRVL 982
              +               P   + +  ++  G +   + K   + +F TK+   AYQG +L
Sbjct:   824 RTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDIL 883

Query:   983 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 1042
               + GLDLS N+L G IP +IG+L  I++LNLS N LTG+IP + S L+ +ESLDLS NK
Sbjct:   884 RYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNK 943

Query:  1043 LSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL-PICR 1101
             L G IP  L DLN+L    ++YNNLSG+IP +     TF++ SY GN  LCGLP    C 
Sbjct:   944 LDGSIPPALADLNSLGYLNISYNNLSGEIP-FKGHLVTFDERSYIGNAHLCGLPTNKNCI 1002

Query:  1102 SLATMSEASTS-------NEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRW 1154
             S       S S       NE + N+IDM  F+ T    Y+     +   LY++  W R W
Sbjct:  1003 SQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREW 1062

Query:  1155 LYLVEMWI 1162
              Y V++ +
Sbjct:  1063 FYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 825 (295.5 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
 Identities = 262/890 (29%), Positives = 421/890 (47%)

Query:   289 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 348
             L + DN + N+ +   +  +R L        G+ D  +  +S+     L  L L SN F 
Sbjct:    86 LSLKDNSLLNLSLLHPFEDVRSLNLSSSRCSGLFDDVEGYKSLRKLRKLEILDLASNKFN 145

Query:   349 ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP 408
              ++     L   T+L  L L  +++  S          +L+ L +S    NG +  Q   
Sbjct:   146 NSIF--HFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLELLDLSRNRFNGSIPIQELS 203

Query:   409 HFKSLEHLDM---RFA-RIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRI---LDQG 461
               + L+ LD+    F+  + L   F   +  S+                  ++   L   
Sbjct:   204 SLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQELDLSQNKLVGHLPSC 263

Query:   462 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 521
             L  L  L+ L + +N L G++P  L +  SL  L +  N   GS S   L +L+++  L+
Sbjct:   264 LTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLK 323

Query:   522 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 581
             L +    + V  E  +   K ++        N E    H L  +  L+ + LS N   S 
Sbjct:   324 LCSKSSSLQVLSESSWK-PKFQLSVIALRSCNME-KVPHFLLHQKDLRHVDLSDN-NISG 380

Query:   582 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL-VND-SLAGPFRLP-IHS 638
               P +L   +   +  L    +   F   + ++   L FL +  ND +   P  +  I  
Sbjct:   381 KLPSWLLANNTKLKVLLLQNNLFTSFQ--IPKSAHNLLFLDVSANDFNHLFPENIGWIFP 438

Query:   639 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF-LQFLDLS 697
             H  LR+L+ S NNFQ ++P  +G+ +  + Y ++S N+  G++P SF N  + +  L LS
Sbjct:   439 H--LRYLNTSKNNFQENLPSSLGN-MNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLS 495

Query:   698 NNKLTGEI-PDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ 756
             +NKL+GEI P+      +             G I   + SL NL  L +  N+  G IP 
Sbjct:   496 HNKLSGEIFPESTNFTNILGLFMDNNLFT--GKIGQGLRSLINLELLDMSNNNLTGVIPS 553

Query:   757 SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILD 816
              + +  SL  L +++N L G IP  L N   LQ + +  N L G IP +    + + +L 
Sbjct:   554 WIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLL- 612

Query:   817 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 876
             + DN +SG++P      +++ + L  N   G++ E  F N  ++  L L  N   G IP 
Sbjct:   613 LQDNKLSGTIPDTLLA-NVEILDLRNNRFSGKIPE--FINIQNISILLLRGNNFTGQIPH 669

Query:   877 WIDGLSQLSHLNLAHNNLEGEVP-IXXXXXXXXXXXXXXXXXXHGL-IPS-CFDNTTLHE 933
              + GLS +  L+L++N L G +P                     G+  PS  F+  +LH+
Sbjct:   670 QLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQ 729

Query:   934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEI-FEFTTKNIAYAYQGRVLSLLAGLDLSC 992
              +++N +    FK+  ++  P     K   +   EF TK+   AY G  L LL G+DLS 
Sbjct:   730 DFSSNKNGGIYFKSLLTLD-PLSMDYKAATQTKIEFATKHRYDAYMGGNLKLLFGMDLSE 788

Query:   993 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV 1052
             N+L G IP + G L  ++ LNLSHNNL+G IP + S++  +ES DLS+N+L G+IP QL 
Sbjct:   789 NELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLT 848

Query:  1053 DLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTS 1112
             +L +L++F V++NNLSG IP+   QF TF+  SY GN  LCG P     +  +  EA   
Sbjct:   849 ELTSLSVFKVSHNNLSGVIPQGR-QFNTFDAESYFGNRLLCGQPTNRSCNNNSYEEADNG 907

Query:  1113 NEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWI 1162
              E D+++IDM SF+++F  +YV ++ GI+  L  +  W R W Y V+ +I
Sbjct:   908 VEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFWFYKVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 295/889 (33%), Positives = 435/889 (48%)

Query:   310 KLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH------LESNNFTATLTTTQELHNFTNL 363
             +L+SL+LSG    + N L   +  + SL  L       L SN+F  ++     L+  T+L
Sbjct:   107 ELRSLNLSGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPF--LNAATSL 164

Query:   364 EYLTLDDS----SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 419
               L +  +     L I  L+++  +   L +LS SG   NG +    F H + L+ LD+ 
Sbjct:   165 TTLFIQSNYIGGPLPIKELKNLTKL--ELLDLSRSG--YNGSIPE--FTHLEKLKALDLS 218

Query:   420 FARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRILDQGLCPLAHLQELYIDNNDLR 479
                 +   S +++  + +                   I  +  C + +L++L +  N   
Sbjct:   219 ANDFS---SLVEL--QELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFE 273

Query:   480 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH 539
             G LP CL N   LR+LD+S NQL+G++ +S    L S+E L LS+N+F    SL PL N 
Sbjct:   274 GQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNNFEGFFSLNPLANL 332

Query:   540 SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELS 599
             +KLK+F   +     ++    +  PKFQL   +L   +      P FL +Q  L+  +LS
Sbjct:   333 TKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALP--FCSLGKIPNFLVYQTNLRLVDLS 390

Query:   600 HIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 659
               ++ G+ P WLLENN +L+ L L N+S    F++P   HK L+ LD S N+  G +P  
Sbjct:   391 SNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDITGVLPDN 448

Query:   660 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXX 719
             IG +LP L++ N S N   G++PSS G +  + FLDLS N  +GE+P  L   C      
Sbjct:   449 IGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITL 508

Query:   720 XXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 779
                     G I      L +L  L +  N F GEI   L    +L     +NN L+G I 
Sbjct:   509 QLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLIS 568

Query:   780 RWLG-NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP--LSIK 836
               +  +   L  +++  N LEG +P     +  L  LD+S N +SG LPS        IK
Sbjct:   569 SSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIK 628

Query:   837 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 896
              + L  N   G L      N      LDL  N L+GSIP +++   ++  L L  NNL G
Sbjct:   629 -IFLHNNSFTGPLPVTLLENA---YILDLRNNKLSGSIPQFVN-TGKMITLLLRGNNLTG 683

Query:   897 EVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDN--TTLHESYN-NNSSPDKPFKTSFSISG 953
              +P                   +G+IP C ++  T L E    +  S +  F  S  +  
Sbjct:   684 SIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEF 743

Query:   954 PQGS--VEK---------KILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 1002
              + +  V++          I+EI EF  K    ++ G  L  + GLDLS N+L G IP +
Sbjct:   744 YRSTFLVDEFMLYYDSTYMIVEI-EFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAE 802

Query:  1003 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 1062
             +G+L++++ LNLS N L+ +IP  FS L+ IESLDLSYN L G IP QL +L +LA+F V
Sbjct:   803 LGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNV 862

Query:  1063 AYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP-ICRSLATMSEASTSNE------G 1115
             ++NNLSG IP+   QF TFN +SY GNP LCG P    C       EA    E       
Sbjct:   863 SFNNLSGIIPQG-GQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDD 921

Query:  1116 DDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITS 1164
             D+  IDM   + T   +Y I + GI+V++  +  WRR WL +V+ +I S
Sbjct:   922 DEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 288/894 (32%), Positives = 428/894 (47%)

Query:   279 EFDSLSNLEELDINDN--EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN-KLLQSMGSFP 335
             E+DS+      D   +  + +N++ +R  R L  L       + I   N  LL       
Sbjct:    36 EYDSVLPTWTNDTKSDCCQWENIKCNRTSRRLTGLSLYTSYYLEISLLNLSLLHPFEEVR 95

Query:   336 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 395
             SL+  +   N     +   + L    NL+ L    +  + S+   + +   SL  LS+  
Sbjct:    96 SLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAA-TSLTTLSLRR 154

Query:   396 CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXX 455
               + G +  +   +  +LE LD+   RI      + +     P                 
Sbjct:   155 NNMYGPIPLKELKNLTNLELLDLSGNRI---DGSMPV--REFPYLKKLKALDLSSNGIYS 209

Query:   456 RILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 515
              +  Q  C + +LQEL +   +  G LP C  N   LR LD+S NQLTG+I  S    L 
Sbjct:   210 SMEWQVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLE 268

Query:   516 SIEELRLSNNHFRIPVSLEPLFNHSKLK--IFDAKNNEINGEINESHSLTPKFQLKSLSL 573
             S+E L LS+N F    SL PL N +KLK  IF +K++ +  +I ES +  P FQL  L L
Sbjct:   269 SLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKI-ES-TWQPLFQLSVLVL 326

Query:   574 SSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFR 633
                  + +  P FL +Q  L   +LS  ++ G  P WLLENN +LE L L N+S    F+
Sbjct:   327 RLCSLEKI--PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQ 383

Query:   634 LPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQF 693
             +P   H  L+ LD S NN  G  P   G +LP+LV+ N S N   G+ PSS G +  + F
Sbjct:   384 MPTSVHN-LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISF 442

Query:   694 LDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGE 753
             LDLS N L+GE+P      C              GH   R  +  +L  L +  N F G+
Sbjct:   443 LDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGK 502

Query:   754 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 813
             I   L     L  L ++NN L G++P  L   + L  + +  N L G +P     LD+  
Sbjct:   503 IGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP-SHVSLDN-- 559

Query:   814 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 873
             +L + +NN +G +P  F   SI+ + L  N L G + +  F +   +  L L  N L G 
Sbjct:   560 VLFLHNNNFTGPIPDTFLG-SIQILDLRNNKLSGNIPQ--FVDTQDISFLLLRGNSLTGY 616

Query:   874 IPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHE 933
             IP  +   S++  L+L+ N L G +P                   +  +    ++  L  
Sbjct:   617 IPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNYY--VAVALESFYL-- 672

Query:   934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN 993
              +  ++   + F+  +S       ++ K      + +   A+ +    L+ + GLDLS N
Sbjct:   673 GFYKSTFVVENFRLDYS---NYFEIDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSN 729

Query:   994 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 1053
             +L G IP ++G+L +++ LNLSHN L+  IP +FS L+ IESLDLSYN L G IP QL +
Sbjct:   730 ELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTN 789

Query:  1054 LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI-CRSLATMSEASTS 1112
             L +LAIF V+YNNLSG IP+   QF TF+++SY GNP LCG P    C +     E +  
Sbjct:   790 LTSLAIFNVSYNNLSGIIPQGK-QFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANG 848

Query:  1113 NEGDDN--LIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITS 1164
              E DD    IDM  F+ +   +YV  + GI+V++ V+  WRR WL LV+ +I S
Sbjct:   849 GEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 277/854 (32%), Positives = 405/854 (47%)

Query:   343 ESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVL 402
             E N F   +   + L    NL+ + L  +  + S    + +   SL  L ++  E++G  
Sbjct:   106 EFNGFFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAA-TSLTTLILTYNEMDGPF 164

Query:   403 SGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRILDQGL 462
               +G     +LE LD+R  +  LN S  ++I                          Q L
Sbjct:   165 PIKGLKDLTNLELLDLRANK--LNGSMQELIHLKKLKALDLSSNKFSSSMEL-----QEL 217

Query:   463 CPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 521
               L +L+ L +  N + G +P        +LR LD+  N   G I   PL  L S+++LR
Sbjct:   218 QNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQI---PLC-LGSLKKLR 273

Query:   522 ---LSNNHFR--IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS--LS 574
                LS+N     +P S   L     L+     +N  +G    S SL P   L +L   + 
Sbjct:   274 VLDLSSNQLSGDLPSSFSSL---ESLEYLSLSDNNFDG----SFSLNPLTNLTNLKFVVV 326

Query:   575 SNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRL 634
               +      P FL +Q +L+  +LS   + G  P WLL NN +LE L L N+S    F +
Sbjct:   327 LRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPI 385

Query:   635 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 694
             P   H  L+  D S NN  G  P ++   LP+LV  N S N   G  P+S G +  + FL
Sbjct:   386 PTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFL 443

Query:   695 DLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEI 754
             DLS N  +G++P      CV             G    R  +  +L  L ++ N F G I
Sbjct:   444 DLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNI 503

Query:   755 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 814
                LS  + L+ L ++NN LSG IPRWL     L ++++  N LEG IP     +  L  
Sbjct:   504 GGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSF 563

Query:   815 LDISDNNISGSLPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 873
             LD+S N  SG+LPS     L I  + L  N   G + + T     S+  LDL  N L+GS
Sbjct:   564 LDLSGNQFSGALPSHVDSELGI-YMFLHNNNFTGPIPD-TLLK--SVQILDLRNNKLSGS 619

Query:   874 IPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTT--- 930
             IP + D    ++ L L  NNL G +P                   +G+IPSC  N +   
Sbjct:   620 IPQF-DDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGR 678

Query:   931 LHE---------SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE--FTTKNIAYAYQG 979
             L E         S+   S   + +K++F +   +  V++   +  E  F  K    +Y G
Sbjct:   679 LQEDAMALNIPPSFLQTSLEMELYKSTFLVDKIE--VDRSTYQETEIKFAAKQRYDSYSG 736

Query:   980 R------VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 1033
             R      +L L+ G+DLS N+L G IP ++G+L +++TLNLSHN+L G+IP +FS L  +
Sbjct:   737 RSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDV 796

Query:  1034 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 1093
             ESLDLS+N L G IP+ L  L +LA+F V+ NNLSG IP+   QF TF + SY GNP LC
Sbjct:   797 ESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGR-QFNTFEEESYLGNPLLC 855

Query:  1094 GLPLP-ICRSLATMSEASTSNEGDDN--LIDMDSFFITFTISYVIVIFGIVVVLYVNPYW 1150
             G P    C +  +  EA    E +D+   IDM  F+ +    YV  + G++V++  +  W
Sbjct:   856 GPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPW 915

Query:  1151 RRRWLYLVEMWITS 1164
             RR WL +V+ +I S
Sbjct:   916 RRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
 Identities = 243/854 (28%), Positives = 393/854 (46%)

Query:   307 GLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTN-LEY 365
             G R++  L+LSG+G+     +  S+G F +L  + L SN     + TT  L N ++ LE 
Sbjct:    69 GGREIIGLNLSGLGLT--GSISPSIGRFNNLIHIDLSSNRLVGPIPTT--LSNLSSSLES 124

Query:   366 LTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM------- 418
             L L  + L   +   +GS+  +LK+L +   E+NG +  + F +  +L+ L +       
Sbjct:   125 LHLFSNLLSGDIPSQLGSLV-NLKSLKLGDNELNGTIP-ETFGNLVNLQMLALASCRLTG 182

Query:   419 ----RFARIA-LNTSFLQI--IGESMPXXXXXXXXXXXXXXXXXRI---LDQGLCPLAHL 468
                 RF R+  L T  LQ   +   +P                 R+   L   L  L +L
Sbjct:   183 LIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNL 242

Query:   469 QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 528
             Q L + +N   G +P  L +  S++ L++  NQL G I    L  L +++ L LS+N+  
Sbjct:   243 QTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKR-LTELANLQTLDLSSNNLT 301

Query:   529 IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLY 588
               V  E  +  ++L+      N ++G + ++   +    LK L LS     S   P  + 
Sbjct:   302 -GVIHEEFWRMNQLEFLVLAKNRLSGSLPKT-ICSNNTSLKQLFLSETQL-SGEIPAEIS 358

Query:   589 HQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVS 648
             +   LK  +LS+  + G+ P+ L +   +L  LYL N+SL G     I +   L+   + 
Sbjct:   359 NCQSLKLLDLSNNTLTGQIPDSLFQL-VELTNLYLNNNSLEGTLSSSISNLTNLQEFTLY 417

Query:   649 NNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 708
             +NN +G +P EIG  L  L    +  N   G +P   GN   LQ +D   N+L+GEIP  
Sbjct:   418 HNNLEGKVPKEIG-FLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSS 476

Query:   709 LAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 768
             +                  G+I + + +   +  + L  N   G IP S    ++L+   
Sbjct:   477 IGRL-KDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFM 535

Query:   769 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP- 827
             + NN+L G +P  L NLK L  I    N   G I    C   S    D+++N   G +P 
Sbjct:   536 IYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSIS-PLCGSSSYLSFDVTENGFEGDIPL 594

Query:   828 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL 887
                   ++ ++ L KN   G++   TF   S L  LD+S N L+G IP  +    +L+H+
Sbjct:   595 ELGKSTNLDRLRLGKNQFTGRIPR-TFGKISELSLLDISRNSLSGIIPVELGLCKKLTHI 653

Query:   888 NLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPS-CFDNTTLHESYNNNSSPDKPFK 946
             +L +N L G +P                    G +P+  F  T +   + + +S      
Sbjct:   654 DLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNS------ 707

Query:   947 TSFSISGPQGSVEK-KILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN 1005
              + SI    G+++    L + E        +  G+ LS L  L LS N L G IP +IG 
Sbjct:   708 LNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGK-LSKLFELRLSRNALTGEIPVEIGQ 766

Query:  1006 LTRIQT-LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAY 1064
             L  +Q+ L+LS+NN TG IP T S L  +ESLDLS+N+L G++P Q+ D+ +L    ++Y
Sbjct:   767 LQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSY 826

Query:  1065 NNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDS 1124
             NNL GK+ +   QF+ +   ++ GN  LCG PL  C    + ++ S S +    +  + S
Sbjct:   827 NNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKTVVIISAISS 883

Query:  1125 FFITFTISYVIVIF 1138
                   +  VI++F
Sbjct:   884 LAAIALMVLVIILF 897

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 4.1e-66, Sum P(2) = 4.1e-66
 Identities = 204/694 (29%), Positives = 331/694 (47%)

Query:   476 NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSL 533
             N   GS+P  L + T+L+ LD+S N + G++S   +  L +++EL L  N     IP  +
Sbjct:   140 NRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGD-IKELKNLQELILDENLIGGAIPSEI 198

Query:   534 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 593
               L    +L     + N  N  I  S S   K  LK++ L +N+  S   P  + +   L
Sbjct:   199 GSLV---ELLTLTLRQNMFNSSIPSSVSRLTK--LKTIDLQNNFLSS-KIPDDIGNLVNL 252

Query:   594 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS-LAGPFRLP-IHSHKRLRFLDVSNNN 651
                 LS  K+ G  P+  + N   LE L L N++ L+G      +   ++L+ L +  NN
Sbjct:   253 STLSLSMNKLSGGIPS-SIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNN 311

Query:   652 -FQGHIPVEIGDILPSLVYFNISMNA--LDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 708
               Q +     G + P     ++S+ +  L+G+IP    N   L +LDLS N+L G  P  
Sbjct:   312 KLQWN---NNGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKW 368

Query:   709 LAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 768
             LA   +             G +   +F   +L +L+L  N+F G+IP ++ + S +  L 
Sbjct:   369 LADLKIRNITLSDNRLT--GSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGE-SQVMVLM 425

Query:   769 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 828
             L+ NN SG +P+ +  +  L+ + + KN L G  P  F     L+ LDIS N  SG +P+
Sbjct:   426 LSENNFSGSVPKSITKIPFLKLLDLSKNRLSGEFP-RFRPESYLEWLDISSNEFSGDVPA 484

Query:   829 CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ-LSHL 887
              ++  S   + +S+N   G+  +  F N S L+ LDL  N ++G++   I  LS  +  L
Sbjct:   485 -YFGGSTSMLLMSQNNFSGEFPQN-FRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVL 542

Query:   888 NLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTT-LHESYNNNSSPDKPFK 946
             +L +N+L+G +P                    G +PS   N T + +S   ++   +P+ 
Sbjct:   543 SLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYF 602

Query:   947 TSFS-ISGPQGSVEKKILEIFEFTT--KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 1003
             +S++ I   +  +E +  +IF      KN       R   L   LDLS NKL G IP  +
Sbjct:   603 SSYTDIPNIERLIEIESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSL 662

Query:  1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063
             GNL  ++ LNLS+N  +G IP +F +L  +ESLDLS+N L+G+IP+ L  L+ L    + 
Sbjct:   663 GNLKSLKVLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLR 722

Query:  1064 YNNLSGKIPEWTAQFATFNKSS-YDGNPFLCGLPLPI-CRSLATMSEASTSNEGD----D 1117
              N L G+IPE + Q    N  + Y  N  +CG+ + + C    T   A    E D    +
Sbjct:   723 NNKLKGRIPE-SPQLDRLNNPNIYANNSGICGMQIQVPCFPTQTKQPAEEKEEEDKEEEE 781

Query:  1118 NLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWR 1151
              +   ++  I  +  ++I     VV +  N  W+
Sbjct:   782 TIFSWNAAAIGCSCGFLIA----VVFMSYNELWK 811

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 3.0e-63, Sum P(2) = 3.0e-63
 Identities = 212/721 (29%), Positives = 324/721 (44%)

Query:   465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
             L HL  L++ +N+  G +P  L N + L  LD+S N   G I SS    L  +  LRL N
Sbjct:   158 LFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSS-FGSLNQLSILRLDN 216

Query:   525 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 584
             N     + LE + N +KL      +N+  G +  +  +T    L+S S S N     T P
Sbjct:   217 NKLSGNLPLE-VINLTKLSEISLSHNQFTGTLPPN--ITSLSILESFSASGNNFVG-TIP 272

Query:   585 KFLYHQHELKEAELSHIKMIG--EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL 642
               L+    +    L + ++ G  EF N  + + + L  L L  ++L GP    I     L
Sbjct:   273 SSLFTIPSITLIFLDNNQLSGTLEFGN--ISSPSNLLVLQLGGNNLRGPIPTSISRLVNL 330

Query:   643 RFLDVSNNNFQGHIPVEIGDILPSL--VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 700
             R LD+S+ N QG +   I   L  L  +Y + S       + +       L  LDLS N 
Sbjct:   331 RTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNH 390

Query:   701 LTGEIPDHLAMCCVXXXXXXXXXXXXKGHI-FSRIF-SLRNLRWLLLEGNHFVGEIPQSL 758
             +   + +  ++                G   F  I  + R +R L +  N   G++P  L
Sbjct:   391 VL--VTNKSSVSDPPLGLIGSLNLSGCGITEFPDILRTQRQMRTLDISNNKIKGQVPSWL 448

Query:   759 SKCSSLKGLYLNNNNLSG-----KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 813
                  L+ ++++NNN  G     K+ + +     ++H     N+  G IP   C L SL 
Sbjct:   449 --LLQLEYMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLI 506

Query:   814 ILDISDNNISGSLPSCF--YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 871
             ILD+S+NN SG++P C   +  ++  ++L +N L G L + T     SL +LD+S+N L 
Sbjct:   507 ILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPK-TIIK--SLRSLDVSHNELE 563

Query:   872 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSC-FDNTT 930
             G +P  +   S L  LN+  N +    P                   HG I    F    
Sbjct:   564 GKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKTRFPKLR 623

Query:   931 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE------FTTKNIAYAYQG----- 979
             + +   N+ +   P       +G   S+EK      E      +   ++    +G     
Sbjct:   624 IIDISRNHFNGTLPSDCFVEWTGMH-SLEKNEDRFNEKYMGSGYYHDSMVLMNKGLEMEL 682

Query:   980 -RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 1038
              R+L +   LD S NK  G IP  IG L  +  LNLS N  TG IP +  NLR +ESLD+
Sbjct:   683 VRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDV 742

Query:  1039 SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 1098
             S NKLSG+IP++L +L+ LA    ++N L G++P  T QF T + SS++ N  LCG PL 
Sbjct:   743 SRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGT-QFRTQSASSFEENLGLCGRPLE 801

Query:  1099 ICRSL--ATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLY 1156
              CR +   T S  S + E +  ++   +  I FT   V+ +    +VL   P W  + LY
Sbjct:   802 ECRVVHEPTPSGESETLESEQ-VLSWIAAAIGFTPGIVLGLTIGHIVLSSKPRWFFKVLY 860

Query:  1157 L 1157
             +
Sbjct:   861 I 861

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1180
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-64
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-54
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-53
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-23
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  235 bits (601), Expect = 6e-64
 Identities = 193/619 (31%), Positives = 294/619 (47%), Gaps = 98/619 (15%)

Query: 492  LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNE 551
            ++ +++S NQL+G I        +S+  L LSNN+F   +    + N   L+  D  NN 
Sbjct: 95   IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNM 151

Query: 552  INGEI-NESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 610
            ++GEI N+  S      LK L L  N                          ++G+ PN 
Sbjct: 152  LSGEIPNDIGSF---SSLKVLDLGGNV-------------------------LVGKIPNS 183

Query: 611  LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 670
            L  N T LEFL L ++ L G     +   K L+++ +  NN  G IP EIG  L SL + 
Sbjct: 184  L-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHL 241

Query: 671  NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 730
            ++  N L G IPSS GN+  LQ+L L  NKL+G IP                        
Sbjct: 242  DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP------------------------ 277

Query: 731  FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 790
               IFSL+ L  L L  N   GEIP+ + +  +L+ L+L +NN +GKIP  L +L  LQ 
Sbjct: 278  -PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336

Query: 791  IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQVHLSKNMLHGQ 848
            + +  N   G IP    + ++L +LD+S NN++G +P   C      K +  S N L G+
Sbjct: 337  LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS-NSLEGE 395

Query: 849  LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL 908
            + + +   C SL  + L  N  +G +P     L  +  L++++NNL+G +  +   +  L
Sbjct: 396  IPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 909  QLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEF 968
            Q+L L+ N   G +P  F +  L                  S +   G+V +K+      
Sbjct: 455  QMLSLARNKFFGGLPDSFGSKRLE-------------NLDLSRNQFSGAVPRKL------ 495

Query: 969  TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 1028
                         LS L  L LS NKL G IP ++ +  ++ +L+LSHN L+G IP +FS
Sbjct: 496  -----------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 1029 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDG 1088
             +  +  LDLS N+LSG+IP+ L ++ +L    +++N+L G +P  T  F   N S+  G
Sbjct: 545  EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAG 603

Query: 1089 NPFLCG----LPLPICRSL 1103
            N  LCG      LP C+ +
Sbjct: 604  NIDLCGGDTTSGLPPCKRV 622

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  206 bits (526), Expect = 1e-54
 Identities = 149/438 (34%), Positives = 217/438 (49%), Gaps = 42/438 (9%)

Query: 641  RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS-FGNVIFLQFLDLSNN 699
            R+  +D+S  N  G I   I   LP +   N+S N L G IP   F     L++L+LSNN
Sbjct: 70   RVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 700  KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 759
              TG IP         LE L LSNN L G I + I S  +L+ L L GN  VG+IP SL+
Sbjct: 129  NFTGSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

Query: 760  KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 819
              +SL+ L L +N L G+IPR LG +K L+ I +  N+L G IP E   L SL  LD+  
Sbjct: 186  NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 820  NNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 878
            NN++G +PS    L  ++ + L +N L G +   + F+   L++LDLS N L+G IP+ +
Sbjct: 246  NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPELV 304

Query: 879  DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF---DNTTLHESY 935
              L  L  L+L  NN  G++P+ L  L +LQ+L L  N   G IP      +N T+ +  
Sbjct: 305  IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364

Query: 936  NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 995
             NN + + P     S                            G +  L+    L  N L
Sbjct: 365  TNNLTGEIPEGLCSS----------------------------GNLFKLI----LFSNSL 392

Query: 996  VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 1055
             G IP  +G    ++ + L  N+ +G +P  F+ L  +  LD+S N L G+I  +  D+ 
Sbjct: 393  EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452

Query: 1056 TLAIFIVAYNNLSGKIPE 1073
            +L +  +A N   G +P+
Sbjct: 453  SLQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  201 bits (513), Expect = 7e-53
 Identities = 166/538 (30%), Positives = 268/538 (49%), Gaps = 46/538 (8%)

Query: 388 LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG 447
           + ++ +SG  ++G +S   F     ++ +++  +   L+      I  +  SL+YL+LS 
Sbjct: 71  VVSIDLSGKNISGKISSAIF-RLPYIQTINL--SNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 448 STLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSIS 507
           +    N +  + +G  P   L+ L + NN L G +P  + + +SL++LD+  N L G I 
Sbjct: 128 N----NFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181

Query: 508 SSPLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPK 565
           +S L +LTS+E L L++N    +IP  L  + +   LK      N ++GEI         
Sbjct: 182 NS-LTNLTSLEFLTLASNQLVGQIPRELGQMKS---LKWIYLGYNNLSGEI--------P 229

Query: 566 FQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 625
           +++  L+                    L   +L +  + G  P+  L N   L++L+L  
Sbjct: 230 YEIGGLT-------------------SLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQ 269

Query: 626 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF 685
           + L+GP    I S ++L  LD+S+N+  G IP E+   L +L   ++  N   G IP + 
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVAL 328

Query: 686 GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 745
            ++  LQ L L +NK +GEIP +L     NL  L LS N+L G I   + S  NL  L+L
Sbjct: 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387

Query: 746 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE 805
             N   GEIP+SL  C SL+ + L +N+ SG++P     L  +  + +  N+L+G I   
Sbjct: 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447

Query: 806 FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 865
              + SLQ+L ++ N   G LP  F    ++ + LS+N   G +      + S L+ L L
Sbjct: 448 KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK-LGSLSELMQLKL 506

Query: 866 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP 923
           S N L+G IPD +    +L  L+L+HN L G++P     +  L  LDLS N L G IP
Sbjct: 507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  105 bits (264), Expect = 6e-23
 Identities = 163/660 (24%), Positives = 268/660 (40%), Gaps = 121/660 (18%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLS 135
           +S+  P + L +    WN+ A     +G+   +  + +  +DLSG   +  + S++ RL 
Sbjct: 39  SSINDPLKYLSN----WNSSADVCLWQGIT-CNNSSRVVSIDLSGKNISGKISSAIFRLP 93

Query: 136 SLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFK 195
            ++++ LS+N+L G I      +   L  L++  N     +    +  L++L LS     
Sbjct: 94  YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLS 153

Query: 196 GTFDVREFDSFNNLEVLDMSGNEI--------------------DNLVVPQGLERLSRLS 235
           G     +  SF++L+VLD+ GN +                     N +V Q    L ++ 
Sbjct: 154 GEI-PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212

Query: 236 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE 295
            LK + L  N  +  I   +  L+SL  L L +N L G I +    +L NL+ L +  N+
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNK 271

Query: 296 IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQ 355
           +    +      L+KL SLDLS   +    ++ + +    +L  LHL SNNFT  +    
Sbjct: 272 LSG-PIPPSIFSLQKLISLDLSDNSL--SGEIPELVIQLQNLEILHLFSNNFTGKIPVA- 327

Query: 356 ELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEH 415
            L +   L+ L L  +     + +++G       NL++     N  L+G+      S  +
Sbjct: 328 -LTSLPRLQVLQLWSNKFSGEIPKNLG----KHNNLTVLDLSTNN-LTGEIPEGLCSSGN 381

Query: 416 LDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDN 475
           L   F  I  + S   + GE   SL                    G C    L+ + + +
Sbjct: 382 L---FKLILFSNS---LEGEIPKSL--------------------GAC--RSLRRVRLQD 413

Query: 476 NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 535
           N   G LP        +  LD+S N L G I+S     + S++ L L+ N F     L  
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFF--GGLPD 470

Query: 536 LFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKE 595
            F   +L+  D   N+ +G +           L SLS                   EL +
Sbjct: 471 SFGSKRLENLDLSRNQFSGAVPRK--------LGSLS-------------------ELMQ 503

Query: 596 AELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGH 655
            +LS  K+ GE P+ L                          S K+L  LD+S+N   G 
Sbjct: 504 LKLSENKLSGEIPDEL-------------------------SSCKKLVSLDLSHNQLSGQ 538

Query: 656 IPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVN 715
           IP    + +P L   ++S N L G IP + GNV  L  +++S+N L G +P   A   +N
Sbjct: 539 IPASFSE-MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAIN 597

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  105 bits (263), Expect = 7e-23
 Identities = 182/682 (26%), Positives = 285/682 (41%), Gaps = 147/682 (21%)

Query: 25  LLRLKHFFTDPYD-----KGATDCCQWEGVECSNTTGRVIGLYLS-ETYSGEYWYLNASL 78
           LL  K    DP         + D C W+G+ C+N++ RV+ + LS +  SG+   +++++
Sbjct: 34  LLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSS-RVVSIDLSGKNISGK---ISSAI 89

Query: 79  FT-PFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR--LS 135
           F  P+  +++++LS N ++G   ++     S   +L+ L+LS    NNN   S+ R  + 
Sbjct: 90  FRLPY--IQTINLSNNQLSGPIPDDIFTTSS---SLRYLNLS----NNNFTGSIPRGSIP 140

Query: 136 SLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSK------GLSKLKSLGL 189
           +L +L LS+N L G I   ++ S   L+ LD+GGN     +V K       L+ L+ L L
Sbjct: 141 NLETLDLSNNMLSGEI-PNDIGSFSSLKVLDLGGN----VLVGKIPNSLTNLTSLEFLTL 195

Query: 190 SGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNN 249
           +     G    RE     +L+ + +  N +   +  +    +  L+ L  LDL  N    
Sbjct: 196 ASNQLVGQIP-RELGQMKSLKWIYLGYNNLSGEIPYE----IGGLTSLNHLDLVYNNLTG 250

Query: 250 SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN----EIDNVEVSRGY 305
            I SS+  L +L  L L  N L G I    F SL  L  LD++DN    EI  + +    
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQN 309

Query: 306 RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY 365
             +  L S + +G       K+  ++ S P L  L L SN F+  +      HN  NL  
Sbjct: 310 LEILHLFSNNFTG-------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN--NLTV 360

Query: 366 LTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL 425
           L L  ++L        G I   L +   SG                   +L   F  I  
Sbjct: 361 LDLSTNNL-------TGEIPEGLCS---SG-------------------NL---FKLILF 388

Query: 426 NTSFLQIIGESMPSLKYLSLSGSTLGTNS-SRILDQGLCPLAHLQELYIDNNDLRGSLPW 484
           + S    I +S+ + +  SL    L  NS S  L      L  +  L I NN+L+G +  
Sbjct: 389 SNSLEGEIPKSLGACR--SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Query: 485 CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFNHSKL 542
              +  SL++L ++ N+  G +  S       +E L LS N F   +P  L  L   S+L
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLPDS--FGSKRLENLDLSRNQFSGAVPRKLGSL---SEL 501

Query: 543 KIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIK 602
                  N+++GEI                           P  L    +L   +LSH +
Sbjct: 502 MQLKLSENKLSGEI---------------------------PDELSSCKKLVSLDLSHNQ 534

Query: 603 MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 662
           + G+ P    E                    +P+     L  LD+S N   G IP  +G+
Sbjct: 535 LSGQIPASFSE--------------------MPV-----LSQLDLSQNQLSGEIPKNLGN 569

Query: 663 ILPSLVYFNISMNALDGSIPSS 684
           +  SLV  NIS N L GS+PS+
Sbjct: 570 V-ESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.5 bits (209), Expect = 1e-16
 Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 8/119 (6%)

Query: 987  GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 1046
            GL L    L G IP  I  L  +Q++NLS N++ G IP +  ++  +E LDLSYN  +G 
Sbjct: 422  GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 1047 IPRQLVDLNTLAIFIVAYNNLSGKIPEWTA----QFATFNKSSYDGNPFLCGLP-LPIC 1100
            IP  L  L +L I  +  N+LSG++P          A+FN   +  N  LCG+P L  C
Sbjct: 482  IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 66.1 bits (161), Expect = 3e-11
 Identities = 89/306 (29%), Positives = 136/306 (44%), Gaps = 16/306 (5%)

Query: 75  NASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARL 134
           N  L  P      L L   + +G +  +G E L  L  L  LDL+ N   +N +S L  L
Sbjct: 57  NTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSN-ISELLEL 115

Query: 135 SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKG-LSKLKSLGLSGTG 193
           ++L SL L +N +     +  L     L+ELD+  NKI+        L  LK+L LS   
Sbjct: 116 TNLTSLDLDNNNITDIPPLIGLLKSN-LKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174

Query: 194 FKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILS 253
                 +    S  NL  LD+SGN+I +L           LS L++LDL  N     +LS
Sbjct: 175 LSDLPKLLSNLS--NLNNLDLSGNKISDLPPEIE-----LLSALEELDLSNNSI-IELLS 226

Query: 254 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKS 313
           S++ L +L+ L LS+N L+   ++    +LSNLE LD+++N+I ++        L  L+ 
Sbjct: 227 SLSNLKNLSGLELSNNKLEDLPESIG--NLSNLETLDLSNNQISSIS---SLGSLTNLRE 281

Query: 314 LDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL 373
           LDLSG  + +   L+  +     L    L +         +  L+N       T    +L
Sbjct: 282 LDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEAL 341

Query: 374 HISLLQ 379
            I    
Sbjct: 342 SILESL 347

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 1e-10
 Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 1/94 (1%)

Query: 690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 749
           F+  L L N  L G IP+ ++    +L+ ++LS NS++G+I   + S+ +L  L L  N 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 750 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 783
           F G IP+SL + +SL+ L LN N+LSG++P  LG
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 1e-10
 Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 24/105 (22%)

Query: 798 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 857
           L G IP +  +L  LQ +++S N+I G++P                         +  + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SLGSI 465

Query: 858 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL 902
           +SL  LDLSYN  NGSIP+ +  L+ L  LNL  N+L G VP  L
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 30/249 (12%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEG--LEGLSRLNNLKMLDLSGNAF---NNNVLSS 130
           AS   P   L+ L LS N            L+GL++   L+ LDLS NA       VL S
Sbjct: 44  ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103

Query: 131 LARLSSLRSLYLSDNRLEGSIDVKELDSLRD----LEELDIGGNKI---DKFMVSKGLSK 183
           L R SSL+ L L++N L           L+D    LE+L +G N++       ++K L  
Sbjct: 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA 163

Query: 184 LKSL--------GLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 235
            + L        G+   G +         +  NLEVLD++ N + +       E L+ L 
Sbjct: 164 NRDLKELNLANNGIGDAGIRALA--EGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221

Query: 236 KLKKLDLRGNLCNNSILSSVA-----RLSSLTSLHLSHNIL--QGSIDAKEF-DSLSNLE 287
            L+ L+L  N   ++  +++A        SL +L LS N +   G+ D  E      +L 
Sbjct: 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281

Query: 288 ELDINDNEI 296
           ELD+  N+ 
Sbjct: 282 ELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 7e-10
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 621 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS 680
           L L N  L G     I   + L+ +++S N+ +G+IP  +G I  SL   ++S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 681 IPSSFGNVIFLQFLDLSNNKLTGEIP 706
           IP S G +  L+ L+L+ N L+G +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 27/77 (35%), Positives = 47/77 (61%)

Query: 752 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 811
           G IP  +SK   L+ + L+ N++ G IP  LG++  L+ + +  N   G IP    +L S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 812 LQILDISDNNISGSLPS 828
           L+IL+++ N++SG +P+
Sbjct: 492 LRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 3e-09
 Identities = 34/85 (40%), Positives = 48/85 (56%)

Query: 719 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 778
           L L N  L+G I + I  LR+L+ + L GN   G IP SL   +SL+ L L+ N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 779 PRWLGNLKGLQHIVMPKNHLEGPIP 803
           P  LG L  L+ + +  N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 5e-09
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 645 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 704
           L + N   +G IP +I   L  L   N+S N++ G+IP S G++  L+ LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 705 IPDHLAMCCVNLEFLSLSNNSLKGHI 730
           IP+ L     +L  L+L+ NSL G +
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 5e-09
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 1009 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068
            I  L L +  L G IP   S LRH++S++LS N + G IP  L  + +L +  ++YN+ +
Sbjct: 420  IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 1069 GKIPEWTAQFATFNKSSYDGNPFLCG 1094
            G IPE   Q  +    + +GN  L G
Sbjct: 480  GSIPESLGQLTSLRILNLNGN-SLSG 504

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 58.1 bits (140), Expect = 1e-08
 Identities = 74/282 (26%), Positives = 110/282 (39%), Gaps = 20/282 (7%)

Query: 107 LSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELD 166
           L  L NL  LDL  N   +         S+L+ L LSDN++E       L +L +L+ LD
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS--PLRNLPNLKNLD 169

Query: 167 IGGNKIDKFMVSKG-LSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVP 225
           +  N +         LS L +L LSG          E    + LE LD+S N I  L+  
Sbjct: 170 LSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELL--SALEELDLSNNSIIELLSS 227

Query: 226 QGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSN 285
                LS L  L  L+L  N   +    S+  LS+L +L LS+N +          SL+N
Sbjct: 228 -----LSNLKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQIS---SISSLGSLTN 278

Query: 286 LEELDINDNEIDNVEVSRGYRGL--RKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLE 343
           L ELD++ N + N         L    L +L L+   +      +    +  S       
Sbjct: 279 LRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSP 338

Query: 344 SNNFT----ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI 381
                      L T     + +NL    + + +   SLL  +
Sbjct: 339 EALSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLV 380

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 5e-08
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
           L HLQ + +  N +RG++P  L + TSL +LD+S+N   GSI  S L  LTS+  L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 525 NHF--RIPVSL 533
           N    R+P +L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 863 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 922
           L L    L G IP+ I  L  L  +NL+ N++ G +P  L  +  L++LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 923 P 923
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 5e-07
 Identities = 25/78 (32%), Positives = 47/78 (60%)

Query: 860 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 919
           L +++LS N + G+IP  +  ++ L  L+L++N+  G +P  L +L  L++L+L+ N+L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 920 GLIPSCFDNTTLHESYNN 937
           G +P+      LH +  N
Sbjct: 504 GRVPAALGGRLLHRASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 49/151 (32%), Positives = 69/151 (45%), Gaps = 31/151 (20%)

Query: 18  LDHERFALLRLKHFFTDPYDKGAT-DCC-----QWEGVECS--NTTGR--VIGLYLSETY 67
           L  E  AL  LK     P   G   D C      W G +C   +T G+  + GL L    
Sbjct: 370 LLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLD--- 426

Query: 68  SGEYWYLNASL--FTP-----FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSG 120
                  N  L  F P      + L+S++LS N+I G         L  + +L++LDLS 
Sbjct: 427 -------NQGLRGFIPNDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSY 475

Query: 121 NAFNNNVLSSLARLSSLRSLYLSDNRLEGSI 151
           N+FN ++  SL +L+SLR L L+ N L G +
Sbjct: 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.5 bits (123), Expect = 1e-06
 Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 14/223 (6%)

Query: 612 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 671
           L   T L  L L N+++     L       L+ LD+S+N  +  +P  + + LP+L   +
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLD 169

Query: 672 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 731
           +S N L   +P    N+  L  LDLS NK++ ++P  + +    LE L LSNN     I 
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS-ALEELDLSNN----SII 222

Query: 732 SRIFSLRNLRWLLLEG--NHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 789
             + SL NL+ L      N+ + ++P+S+   S+L+ L L+NN +S      LG+L  L+
Sbjct: 223 ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLR 280

Query: 790 HIVMPKNHLEGPIPVEF-CRLDSLQILDISDNNISGSLPSCFY 831
            + +  N L   +P+     L    +L++     +  L     
Sbjct: 281 ELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSI 323

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 2e-06
 Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 53/141 (37%)

Query: 884  LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 943
            +  L L +  L G +P  + +L  LQ ++LS N++ G IP    +               
Sbjct: 420  IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--------------- 464

Query: 944  PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 1003
                   I+                                L  LDLS N   G IP  +
Sbjct: 465  -------ITS-------------------------------LEVLDLSYNSFNGSIPESL 486

Query: 1004 GNLTRIQTLNLSHNNLTGTIP 1024
            G LT ++ LNL+ N+L+G +P
Sbjct: 487  GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 838 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 894
           + LS N L   + +G F    +L  LDLS N L    P+   GL  L  L+L+ NNL
Sbjct: 5   LDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 988  LDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043
            LDLS N+L   IP      L  ++ L+LS NNLT   P  FS L  + SLDLS N L
Sbjct: 5    LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 49.3 bits (118), Expect = 7e-06
 Identities = 70/339 (20%), Positives = 116/339 (34%), Gaps = 78/339 (23%)

Query: 154 KELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLD 213
             L     L+EL +  N+             + L     G      ++E D  +N    D
Sbjct: 45  SALRPQPSLKELCLSLNETG--------RIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96

Query: 214 MSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR-----LSSLTSLHLSH 268
             G           LE L R S L++L L  N   +  L  +A+       +L  L L  
Sbjct: 97  GCG----------VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGR 146

Query: 269 NIL--QGSID-AKEFDSLSNLEELDINDNEIDNVEVSRGYRGLR---KLKSLDLSGVGIR 322
           N L        AK   +  +L+EL++ +N I +  +     GL+    L+ LDL+  G+ 
Sbjct: 147 NRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206

Query: 323 DGNKLLQSMG--SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQS 380
           D      +    S  SL  L+L  NN T                   L  + L  +    
Sbjct: 207 DEGASALAETLASLKSLEVLNLGDNNLTDAGA-------------AALASALLSPN---- 249

Query: 381 IGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSL 440
                 SL  LS+S  ++      +                         +++ E   SL
Sbjct: 250 -----ISLLTLSLSCNDI-TDDGAK----------------------DLAEVLAE-KESL 280

Query: 441 KYLSLSGSTLGTNSSRILDQ-GLCPLAHLQELYIDNNDL 478
             L L G+  G   +++L +  L P   L+ L++ ++  
Sbjct: 281 LELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 8e-06
 Identities = 25/60 (41%), Positives = 30/60 (50%)

Query: 859 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 918
           +L +LDLS N L         GL  L  L+L+ NNL    P     L  L+ LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.8 bits (116), Expect = 1e-05
 Identities = 82/337 (24%), Positives = 130/337 (38%), Gaps = 20/337 (5%)

Query: 408 PHFKSLEHLDMRFARIAL----NTSFLQIIGESMPSLKYLSLS-GSTLGTNSSRILDQGL 462
                   L     R  L      +  Q I  + P     S++        SS  L    
Sbjct: 4   AENLLKSALSSNTLREVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLP 63

Query: 463 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 522
             L+ L  L + +     SL         L +  +  N      + S L+ LT++  L L
Sbjct: 64  SSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDL 123

Query: 523 SNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVT 582
            NN+    +        S LK  D  +N+I    +   +L     LK+L LS N  D   
Sbjct: 124 DNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLP---NLKNLDLSFN--DLSD 177

Query: 583 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL 642
            PK L +   L   +LS  K I + P   +E  + LE L L N+S+       + + K L
Sbjct: 178 LPKLLSNLSNLNNLDLSGNK-ISDLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNL 234

Query: 643 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 702
             L++SNN  +          L +L   ++S N +  S  SS G++  L+ LDLS N L+
Sbjct: 235 SGLELSNNKLEDLPESIGN--LSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLS 290

Query: 703 GEIPDHLAM--CCVNLEFLSLSNNSLKGHIFSRIFSL 737
             +P    +      L  L L+  +L+  + S + + 
Sbjct: 291 NALPLIALLLLLLELLLNLLLTLKALELKLNSILLNN 327

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 7/42 (16%)

Query: 18 LDHERFALLRLKHFFTDPY-------DKGATDCCQWEGVECS 52
          L+ +R ALL  K              +  ++D C W GV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 6e-05
 Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 9/208 (4%)

Query: 712 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 771
             ++L+ LS S  S      + + +L  L  L L  N     I   L + ++L  L L+N
Sbjct: 68  RLLSLDLLSPSGISSLDGSENLL-NLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDN 125

Query: 772 NNLSGKIPRWLGNLK-GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 830
           NN++  IP  +G LK  L+ + +  N +E  +P     L +L+ LD+S N++S       
Sbjct: 126 NNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLS 183

Query: 831 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 890
              ++  + LS N +            S+L  LDLS N +   +   +  L  LS L L+
Sbjct: 184 NLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELS 240

Query: 891 HNNLEGEVPIQLCRLNQLQLLDLSDNNL 918
           +N LE ++P  +  L+ L+ LDLS+N +
Sbjct: 241 NNKLE-DLPESIGNLSNLETLDLSNNQI 267

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 8e-05
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 260 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
           +L SL LS+N L   I    F  L NL+ LD++ N + ++     + GL  L+SLDLSG
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 12/98 (12%)

Query: 202 EFDSFNNLEVLDMSGNEIDNLVVPQGL-----ERLSRLSKLKKLDLRGNLCNNSILSSVA 256
           +FDS      +D  G  +DN    QGL       +S+L  L+ ++L GN    +I  S+ 
Sbjct: 410 QFDSTKGKWFID--GLGLDN----QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 257 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
            ++SL  L LS+N   GSI       L++L  L++N N
Sbjct: 464 SITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 67/260 (25%), Positives = 97/260 (37%), Gaps = 82/260 (31%)

Query: 691 LQFLDLSNNKLTGEIPDHLAMC------CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 744
           L+ L LS N+ TG IP  L            L+ L LS+N+L                  
Sbjct: 53  LKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD--------------- 96

Query: 745 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPV 804
             G   +    +SL + SSL+ L LNNN L  +  R L   KGL+ +             
Sbjct: 97  --GCGVL----ESLLRSSSLQELKLNNNGLGDRGLRLLA--KGLKDLP------------ 136

Query: 805 EFCRLDSLQILDISDNNISGSLPSCFYPLS--------IKQVHLSKNMLHGQ----LKEG 852
               L+    L +  N + G+  SC   L+        +K+++L+ N +       L EG
Sbjct: 137 --PALEK---LVLGRNRLEGA--SCE-ALAKALRANRDLKELNLANNGIGDAGIRALAEG 188

Query: 853 TFFNCSSLVTLDLSYNYLN--------GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ--- 901
              NC +L  LDL+ N L          ++         L  LNL  NNL  +       
Sbjct: 189 LKANC-NLEVLDLNNNGLTDEGASALAETLASLK----SLEVLNLGDNNL-TDAGAAALA 242

Query: 902 ---LCRLNQLQLLDLSDNNL 918
              L     L  L LS N++
Sbjct: 243 SALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 1008 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 1067
             +++L+LS+N LT      F  L +++ LDLS N L+   P     L +L    ++ NNL
Sbjct: 1    NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 691 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 749
           L+ LDLSNN+LT  IPD       NL+ L LS N+L   I    FS L +LR L L GN+
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 750 F 750
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 21/231 (9%)

Query: 362 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFA 421
             E L  + ++  +  L  +  +      L     +              SL+ L +   
Sbjct: 6   KGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAK----ALASALRPQPSLKELCLSLN 61

Query: 422 RIALNTSFLQIIGESMPS---LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 478
                   LQ + + +     L+ L LS + LG +   +L + L   + LQEL ++NN L
Sbjct: 62  ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGL 120

Query: 479 RGSLPWCLA-----NTTSLRILDVSFNQLTGSIS---SSPLVHLTSIEELRLSNNHFR-- 528
                  LA        +L  L +  N+L G+     +  L     ++EL L+NN     
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180

Query: 529 -IPVSLEPLFNHSKLKIFDAKNNEIN--GEINESHSLTPKFQLKSLSLSSN 576
            I    E L  +  L++ D  NN +   G    + +L     L+ L+L  N
Sbjct: 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 739 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 798
           NL+ L L  N        +     +LK L L+ NNL+   P     L  L+ + +  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 763 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 822
           +LK L L+NN L+         L  L+ + +  N+L    P  F  L SL+ LD+S NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 467 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 526
           +L+ L + NN L            +L++LD+S N LT SIS      L S+  L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 527 F 527
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 715 NLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 773
           NL+ L LSNN L   I    F  L NL+ L L GN+     P++ S   SL+ L L+ NN
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 774 L 774
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 617 KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 676
            L+ + L  +S+ G     + S   L  LD+S N+F G IP  +G  L SL   N++ N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 677 LDGSIPSSFG 686
           L G +P++ G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 112 NLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNK 171
           NLK LDLS N        +   L +L+ L LS N L  SI  +    L  L  LD+ GN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 172 I 172
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.004
 Identities = 68/255 (26%), Positives = 112/255 (43%), Gaps = 15/255 (5%)

Query: 807  CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF-FNCSSLVTLDL 865
              L  L  LD+   +   SL      L++  +      L+      +     ++L +LDL
Sbjct: 64   SSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDL 123

Query: 866  SYNYLNGSIPDWIDGL-SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS 924
              N +   IP  I  L S L  L+L+ N +E  +P  L  L  L+ LDLS N+L  L   
Sbjct: 124  DNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKL 181

Query: 925  CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL 984
              + + L+    + +   K       I     S  +++        + +        L  
Sbjct: 182  LSNLSNLNNLDLSGN---KISDLPPEIELL--SALEELDLSNNSIIELL---SSLSNLKN 233

Query: 985  LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
            L+GL+LS NKL   +P  IGNL+ ++TL+LS+N ++     +  +L ++  LDLS N LS
Sbjct: 234  LSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLS 290

Query: 1045 GKIPRQLVDLNTLAI 1059
              +P   + L  L +
Sbjct: 291  NALPLIALLLLLLEL 305

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 700
            L+ LD+SNN     IP      LP+L   ++S N L    P +F  +  L+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 701 L 701
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1180
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.57
PLN03150	623	hypothetical protein; Provisional	99.34
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.25
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.03
KOG4341	483	consensus F-box protein containing LRR [General fu	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.78
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.77
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.77
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
KOG4341	483	consensus F-box protein containing LRR [General fu	98.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.7
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.53
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.43
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.38
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.24
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.11
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.1
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.1
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.03
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.74
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.73
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.64
PRK15386	426	type III secretion protein GogB; Provisional	97.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.55
PRK15386	426	type III secretion protein GogB; Provisional	97.4
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.33
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.26
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.23
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.16
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.43
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.33
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.24
KOG4308	478	consensus LRR-containing protein [Function unknown	96.2
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.85
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.64
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.26
KOG4308	478	consensus LRR-containing protein [Function unknown	92.51
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.02
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.65
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.52
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.11
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.47
smart00370	26	LRR Leucine-rich repeats, outliers.	85.43
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.43
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.41
smart00370	26	LRR Leucine-rich repeats, outliers.	85.41
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.85

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.5e-61  Score=628.08  Aligned_cols=542  Identities=34%  Similarity=0.523  Sum_probs=498.1

Q ss_pred             CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036          466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF  545 (1180)
Q Consensus       466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l  545 (1180)
                      .+++.|++++|.+.+.++..+..+++|+.|++++|++.+.+|...+..+++|++|++++|.+++.+|.   ..+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence            47899999999999999999999999999999999999888666666899999999999999877765   346777777


Q ss_pred             ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036          546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN  625 (1180)
Q Consensus       546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~  625 (1180)
                      ++++|.+.+                           .+|..+..+++|++|++++|.+.+.+|.. +.++++|+.|++++
T Consensus       146 ~Ls~n~~~~---------------------------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~  197 (968)
T PLN00113        146 DLSNNMLSG---------------------------EIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLAS  197 (968)
T ss_pred             ECcCCcccc---------------------------cCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccC
Confidence            777776542                           35667778889999999999999999987 46899999999999


Q ss_pred             CcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCccccccc
Q 001036          626 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI  705 (1180)
Q Consensus       626 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~i  705 (1180)
                      |.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++++++|+.|++++|++++.+
T Consensus       198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  276 (968)
T PLN00113        198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI  276 (968)
T ss_pred             CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence            9999999999999999999999999999999988876 899999999999999999999999999999999999999889


Q ss_pred             ChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCC
Q 001036          706 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL  785 (1180)
Q Consensus       706 p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  785 (1180)
                      |..+. .+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+
T Consensus       277 p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~  355 (968)
T PLN00113        277 PPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH  355 (968)
T ss_pred             chhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence            88874 78999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcC-CCcccEEEcCCcccccccCcccccCCCCCcEEE
Q 001036          786 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD  864 (1180)
Q Consensus       786 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  864 (1180)
                      ++|+.|++++|++.+.+|..++.+++|+.|++++|++.+.+|..+. ..+|+.|++++|.+++.+|. .|.++++|+.|+
T Consensus       356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~  434 (968)
T PLN00113        356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLD  434 (968)
T ss_pred             CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEE
Confidence            9999999999999999999999999999999999999999998764 46899999999999999888 899999999999


Q ss_pred             CcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCC
Q 001036          865 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP  944 (1180)
Q Consensus       865 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~  944 (1180)
                      +++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..|.+++              
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~--------------  499 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS--------------  499 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh--------------
Confidence            99999999999999999999999999999999998876 458999999999999999988776543              


Q ss_pred             CccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcccccccccc
Q 001036          945 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 1024 (1180)
Q Consensus       945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p 1024 (1180)
                                                             .|+.|+|++|+++|.+|..++++++|++|+|++|.++|.+|
T Consensus       500 ---------------------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  540 (968)
T PLN00113        500 ---------------------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP  540 (968)
T ss_pred             ---------------------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence                                                   78999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036         1025 LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus      1025 ~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
                      ..|+++++|+.|||++|+++|.+|..+..++.|+.+++++|+++|.+|. .+++.++...++.|||.+|+.+
T Consensus       541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999999999999999999999999998 7889999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.3e-56  Score=578.02  Aligned_cols=519  Identities=33%  Similarity=0.515  Sum_probs=483.8

Q ss_pred             CCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEEecCCcccccccccccCCCCcccce
Q 001036          490 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLK  569 (1180)
Q Consensus       490 ~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~L~  569 (1180)
                      .+++.|++++|.+.|.+ +..+..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..+.           
T Consensus        69 ~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-----------  136 (968)
T PLN00113         69 SRVVSIDLSGKNISGKI-SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-----------  136 (968)
T ss_pred             CcEEEEEecCCCccccC-ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-----------
Confidence            57999999999999887 678999999999999999999889888788999999999999987643221           


Q ss_pred             EEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccC
Q 001036          570 SLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN  649 (1180)
Q Consensus       570 ~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  649 (1180)
                                        ..++.|++|++++|.+.+.+|.. +.++++|+.|++++|.+.+..|..+..+++|++|++++
T Consensus       137 ------------------~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  197 (968)
T PLN00113        137 ------------------GSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS  197 (968)
T ss_pred             ------------------cccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence                              23567899999999999999987 56899999999999999999999999999999999999


Q ss_pred             CcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCccccc
Q 001036          650 NNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH  729 (1180)
Q Consensus       650 n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~  729 (1180)
                      |.+.+.+|..+.. +++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..+ ..+++|++|++++|.+++.
T Consensus       198 n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        198 NQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             CCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeecc
Confidence            9999999988876 8999999999999999999999999999999999999998899877 5899999999999999999


Q ss_pred             ccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCC
Q 001036          730 IFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL  809 (1180)
Q Consensus       730 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  809 (1180)
                      .|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.++..+++|+.|++++|.+.+.+|..+..+
T Consensus       276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~  355 (968)
T PLN00113        276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH  355 (968)
T ss_pred             CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEccCCcccccCCCCcC-CCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEe
Q 001036          810 DSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLN  888 (1180)
Q Consensus       810 ~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  888 (1180)
                      ++|+.|++++|++++.+|..+. ..+++.+++++|.+.+.+|. .+.++++|+.|++++|++++.+|..|..+++|+.|+
T Consensus       356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  434 (968)
T PLN00113        356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD  434 (968)
T ss_pred             CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence            9999999999999999998764 46899999999999999998 899999999999999999999999999999999999


Q ss_pred             cCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhh
Q 001036          889 LAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEF  968 (1180)
Q Consensus       889 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  968 (1180)
                      +++|++++.+|..+..+++|+.|++++|++.|.+|..++.                                        
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~----------------------------------------  474 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS----------------------------------------  474 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc----------------------------------------
Confidence            9999999999999999999999999999999988875531                                        


Q ss_pred             ccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCC
Q 001036          969 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 1048 (1180)
Q Consensus       969 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip 1048 (1180)
                                    +.|+.||+++|+++|.+|..+.++++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|
T Consensus       475 --------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  540 (968)
T PLN00113        475 --------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP  540 (968)
T ss_pred             --------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence                          268999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036         1049 RQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus      1049 ~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
                      ..+..++.|+.||+++|+++|.+|..+..+..+...++.+|+..+..|
T Consensus       541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            999999999999999999999999988888889999999999887655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-39  Score=344.90  Aligned_cols=378  Identities=26%  Similarity=0.309  Sum_probs=255.9

Q ss_pred             CccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEE
Q 001036          641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS  720 (1180)
Q Consensus       641 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~  720 (1180)
                      ..+.||+++|.+. .+....+..+++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+ ++.......++.|+.||
T Consensus        79 ~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD  155 (873)
T ss_pred             ceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence            3445666666665 444444445666666666666666 45554444445666666666665 45444445566666666


Q ss_pred             ccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCC
Q 001036          721 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG  800 (1180)
Q Consensus       721 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  800 (1180)
                      ||.|.++.+.-..|..-.++++|+|++|.++......|.++.+|.+|.|+.|+++...+..|.++++|+.|+|..|++.-
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            66666665555555555666666666666666656666666666666666666664444555666666666666666653


Q ss_pred             CCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhc
Q 001036          801 PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG  880 (1180)
Q Consensus       801 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~  880 (1180)
                      .--..|.++++|+.|.+..|.++                        .+.+++|.++.+++.|+|+.|+++..-..|+.+
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg  291 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDIS------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG  291 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcc------------------------cccCcceeeecccceeecccchhhhhhcccccc
Confidence            33445666666666666666665                        355567888888888888888887777778888


Q ss_pred             CCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhh
Q 001036          881 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK  960 (1180)
Q Consensus       881 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  960 (1180)
                      +++|+.|+|+.|.|....++.+...++|++|||++|+++...++.|..                                
T Consensus       292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~--------------------------------  339 (873)
T KOG4194|consen  292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV--------------------------------  339 (873)
T ss_pred             cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH--------------------------------
Confidence            888888888888888777777777788888888888887766665543                                


Q ss_pred             hhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccc---cccCCCCCCEEE
Q 001036          961 KILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL---TFSNLRHIESLD 1037 (1180)
Q Consensus       961 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~---~~~~l~~L~~L~ 1037 (1180)
                                           +..|++|.|++|++...-...|..+++|+.|||++|.|++.|-+   .|..|++|+.|+
T Consensus       340 ---------------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~  398 (873)
T KOG4194|consen  340 ---------------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR  398 (873)
T ss_pred             ---------------------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence                                 33677778888888766667777788888888888888877755   367778888888


Q ss_pred             CcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCCCCC
Q 001036         1038 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI 1099 (1180)
Q Consensus      1038 Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l~~ 1099 (1180)
                      |.+|+|..+...+|..+..|+.||+.+|.+-..-|..+.++ .+...-+..-.++|+|.+.|
T Consensus       399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W  459 (873)
T KOG4194|consen  399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW  459 (873)
T ss_pred             ecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence            88888876666677888888888888887776666655555 45555555566788887654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-37  Score=328.91  Aligned_cols=299  Identities=24%  Similarity=0.239  Sum_probs=154.7

Q ss_pred             EEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcc
Q 001036          621 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK  700 (1180)
Q Consensus       621 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~  700 (1180)
                      |++++|.+....+..|.++++|+.+.+..|.++ .||..... ..+++.|+|.+|.|+.+-...+..++.|+.||||.|.
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~  160 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL  160 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence            444444444333334444445555555555554 45543332 3445555555555555555555555555555555555


Q ss_pred             cccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcc
Q 001036          701 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR  780 (1180)
Q Consensus       701 l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~  780 (1180)
                      |+ ++|...|..-.++++|+|++|.++..-...|.++.+|.+|.|+.|+++...+..|.++++|+.|+|..|++.-.---
T Consensus       161 is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  161 IS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             hh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence            55 55554444445555666666655555555555555666666666666554445555566666666666655422223


Q ss_pred             cccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCc-CCCcccEEEcCCcccccccCcccccCCCC
Q 001036          781 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSS  859 (1180)
Q Consensus       781 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  859 (1180)
                      .|..+++|+.|.+..|.+...-...|..+.++++|+|+.|++...-..++ +..+|+.|++|+|.+.. |..+++.-+++
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~Wsftqk  318 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWSFTQK  318 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe-eecchhhhccc
Confidence            45555666666666666555555555566666666666666552211111 11122222222222221 11124444555


Q ss_pred             CcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCC
Q 001036          860 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP  923 (1180)
Q Consensus       860 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  923 (1180)
                      |++|||++|+|+...+..|..+..|++|+|++|++...-...|..+++|+.|||++|.+++.+.
T Consensus       319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE  382 (873)
T KOG4194|consen  319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE  382 (873)
T ss_pred             ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence            6666666666655555556666666666666666555555555555556666666655555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.4e-38  Score=325.21  Aligned_cols=475  Identities=26%  Similarity=0.377  Sum_probs=300.6

Q ss_pred             CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036          466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF  545 (1180)
Q Consensus       466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l  545 (1180)
                      ..++.+.+++|.+... ...+.++..|+++++++|+++ ++ |.+++.+..++.++.++|++. .+|. ....+.+|+.+
T Consensus        45 v~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~l-p~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~l  119 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QL-PAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVKL  119 (565)
T ss_pred             cchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hC-CHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhhh
Confidence            4567777888877633 344677777888888888776 45 456677777777777777665 2221 12333344444


Q ss_pred             ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036          546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN  625 (1180)
Q Consensus       546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~  625 (1180)
                      ++++|.+.                                                   .- |+. ++.+..++.++..+
T Consensus       120 ~~s~n~~~---------------------------------------------------el-~~~-i~~~~~l~dl~~~~  146 (565)
T KOG0472|consen  120 DCSSNELK---------------------------------------------------EL-PDS-IGRLLDLEDLDATN  146 (565)
T ss_pred             hcccccee---------------------------------------------------ec-Cch-HHHHhhhhhhhccc
Confidence            44444332                                                   21 222 23444555555555


Q ss_pred             CcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCccccccc
Q 001036          626 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI  705 (1180)
Q Consensus       626 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~i  705 (1180)
                      |+++. .|..+.++.++..+++.+|++. ..|+..-. ++.|+.||.-.|.+. .+|..++++.+|..|++.+|++. .+
T Consensus       147 N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l  221 (565)
T KOG0472|consen  147 NQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL  221 (565)
T ss_pred             ccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC
Confidence            55543 2444556666777777777776 55555554 677777777777665 56777777777777777777776 66


Q ss_pred             ChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCC
Q 001036          706 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL  785 (1180)
Q Consensus       706 p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  785 (1180)
                      |+  |.+|..|.+++++.|++.....+...+++++.+|||++|+++ ..|..+..+.+|++||+|+|.++ .+|..++++
T Consensus       222 Pe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl  297 (565)
T KOG0472|consen  222 PE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL  297 (565)
T ss_pred             CC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence            62  246777777777777776443344446777777777777776 56666777777777777777776 566667777


Q ss_pred             CCCCeEEccCCcCCCCCCccccCCC---CCCEEE-------ccCC---------cccccCCCCcCCCcccEEEcCCcccc
Q 001036          786 KGLQHIVMPKNHLEGPIPVEFCRLD---SLQILD-------ISDN---------NISGSLPSCFYPLSIKQVHLSKNMLH  846 (1180)
Q Consensus       786 ~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~-------l~~n---------~l~~~~p~~~~~~~L~~L~l~~n~~~  846 (1180)
                       .|+.|.+.+|.+... ...+-+..   -|++|.       ++.-         ...+..|+.....+.+.|++++-+++
T Consensus       298 -hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt  375 (565)
T KOG0472|consen  298 -HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT  375 (565)
T ss_pred             -eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence             777777777765421 11111000   011110       0000         00111222222235666777776665


Q ss_pred             cccCcccccCCC--CCcEEECcCccCccccchhhhcCCCCCE-EecCCCccccCCCccccCCCCCCEEECcCCcCcccCC
Q 001036          847 GQLKEGTFFNCS--SLVTLDLSYNYLNGSIPDWIDGLSQLSH-LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP  923 (1180)
Q Consensus       847 ~~~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  923 (1180)
                       .+|...|....  -....+++.|++. .+|..+..++.+.. +.+++|.+ +.+|..++.+++|..|+|++|.+. .+|
T Consensus       376 -~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP  451 (565)
T KOG0472|consen  376 -LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLP  451 (565)
T ss_pred             -cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcc
Confidence             46654444322  3667788888887 66776766665554 34444444 477888888888888888888776 344


Q ss_pred             CCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccc
Q 001036          924 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 1003 (1180)
Q Consensus       924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~ 1003 (1180)
                      ..++.                                                     +..|+.||+|+|+|. .+|..+
T Consensus       452 ~e~~~-----------------------------------------------------lv~Lq~LnlS~NrFr-~lP~~~  477 (565)
T KOG0472|consen  452 EEMGS-----------------------------------------------------LVRLQTLNLSFNRFR-MLPECL  477 (565)
T ss_pred             hhhhh-----------------------------------------------------hhhhheecccccccc-cchHHH
Confidence            44433                                                     225788888888887 788888


Q ss_pred             cCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCc
Q 001036         1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068 (1180)
Q Consensus      1004 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 1068 (1180)
                      ..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|+.|++++|++.
T Consensus       478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            88878887777778888666666888888888888888888 78888888888888888888887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3e-38  Score=324.49  Aligned_cols=389  Identities=31%  Similarity=0.439  Sum_probs=267.8

Q ss_pred             CCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCC
Q 001036          635 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV  714 (1180)
Q Consensus       635 ~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~  714 (1180)
                      .+++..+++.++++.|.+. .+|++++. +-.+..++..+|+++ ..|..+.++.++..+++.+|+++ ..|+... .++
T Consensus       109 ~i~s~~~l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~  183 (565)
T KOG0472|consen  109 QIGSLISLVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMK  183 (565)
T ss_pred             HHhhhhhhhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH-HHH
Confidence            3445566777777777776 67777776 667777777777777 56667777777777888888777 5555543 377


Q ss_pred             CCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCccccc-CCCCCCeEEc
Q 001036          715 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG-NLKGLQHIVM  793 (1180)
Q Consensus       715 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l  793 (1180)
                      .|++||...|-++ .+|+.++.+.+|..|+|..|++. ..| .|.+|+.|++|+++.|.+. .+|+... ++.++.+||+
T Consensus       184 ~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL  259 (565)
T KOG0472|consen  184 RLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL  259 (565)
T ss_pred             HHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec
Confidence            7778877777775 56777777788888888888776 455 6777788888888777776 6666555 6777888888


Q ss_pred             cCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccc-------------------------
Q 001036          794 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ-------------------------  848 (1180)
Q Consensus       794 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~-------------------------  848 (1180)
                      ++|+++ ..|+.++-+.+|.+||+|+|.++ .+|..++...++.|.+.+|.+...                         
T Consensus       260 RdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dgl  337 (565)
T KOG0472|consen  260 RDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGL  337 (565)
T ss_pred             cccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCC
Confidence            888776 67777777777888888888877 556666666777777777765310                         


Q ss_pred             ------------cCccc---ccCCCCCcEEECcCccCccccchhhhcCC--CCCEEecCCCccccCCCccccCCCCCCE-
Q 001036          849 ------------LKEGT---FFNCSSLVTLDLSYNYLNGSIPDWIDGLS--QLSHLNLAHNNLEGEVPIQLCRLNQLQL-  910 (1180)
Q Consensus       849 ------------~~~~~---~~~~~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~-  910 (1180)
                                  .|...   .....+.+.|++++-+++....+.|..-.  -....++++|++. ++|..+..+..+++ 
T Consensus       338 S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~  416 (565)
T KOG0472|consen  338 SQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTD  416 (565)
T ss_pred             CCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHH
Confidence                        00000   11123334444444444422112221111  1334444444443 34443333333222 


Q ss_pred             EECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEc
Q 001036          911 LDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL  990 (1180)
Q Consensus       911 L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  990 (1180)
                      +++++|.++ .+|..+                                                     ..+++++.|+|
T Consensus       417 l~lsnn~is-fv~~~l-----------------------------------------------------~~l~kLt~L~L  442 (565)
T KOG0472|consen  417 LVLSNNKIS-FVPLEL-----------------------------------------------------SQLQKLTFLDL  442 (565)
T ss_pred             HHhhcCccc-cchHHH-----------------------------------------------------Hhhhcceeeec
Confidence            222222221 122111                                                     23568999999


Q ss_pred             cCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCccc
Q 001036          991 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 1070 (1180)
Q Consensus       991 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ 1070 (1180)
                      ++|-+. .+|.+++.+..|+.||+|+|+|. .+|..+-.+..+|.+-.++|++....|+.+.++..|..||+.+|.+.. 
T Consensus       443 ~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-  519 (565)
T KOG0472|consen  443 SNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-  519 (565)
T ss_pred             ccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-
Confidence            999998 89999999999999999999999 899999999999999999999997777779999999999999999994 


Q ss_pred             CCCcccccccCCccccCCCCCC
Q 001036         1071 IPEWTAQFATFNKSSYDGNPFL 1092 (1180)
Q Consensus      1071 ip~~~~~~~~~~~~~~~~N~~l 1092 (1180)
                      ||...+.+.++....+.|||+-
T Consensus       520 IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  520 IPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             CChhhccccceeEEEecCCccC
Confidence            5555899999999999999975

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.7e-32  Score=294.37  Aligned_cols=359  Identities=26%  Similarity=0.405  Sum_probs=185.7

Q ss_pred             CccEEEccCCccc-ccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEE
Q 001036          641 RLRFLDVSNNNFQ-GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL  719 (1180)
Q Consensus       641 ~L~~L~l~~n~l~-~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L  719 (1180)
                      -.+-+|+++|.|+ +.+|.++-. +++++.|.+....+. .+|..++.+.+|+.|.+++|++. .+-..+ ..++.|+.+
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv   83 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSV   83 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHH
Confidence            3455566666666 345555544 556666666555554 45556666666666666666554 333333 245556666


Q ss_pred             EccCCccc-ccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcc-cccCCCCCCeEEccCCc
Q 001036          720 SLSNNSLK-GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNH  797 (1180)
Q Consensus       720 ~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~  797 (1180)
                      .+..|++. .-+|..+..+..|+.|||++|++. ..|..+..-+++-+|+||+|+|. .||. -|.+++.|-.|++++|+
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            66665553 234555555666666666666655 44555555555566666666655 3333 33455555566666665


Q ss_pred             CCCCCCccccCCCCCCEEEccCCccccc-CCCCcCCCcccEEEcCCcccc-cccCcccccCCCCCcEEECcCccCccccc
Q 001036          798 LEGPIPVEFCRLDSLQILDISDNNISGS-LPSCFYPLSIKQVHLSKNMLH-GQLKEGTFFNCSSLVTLDLSYNYLNGSIP  875 (1180)
Q Consensus       798 l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  875 (1180)
                      +. ..|..+..+..|+.|+|++|++.-. +-..-...+|+.|++++.+-+ ..+|. ++..+.+|..+|+|.|.+. ..|
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp-~vP  238 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP-IVP  238 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCC-cch
Confidence            54 4444555555566666666554310 000001234444444443221 23444 4445555555555555554 445


Q ss_pred             hhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCC
Q 001036          876 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ  955 (1180)
Q Consensus       876 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  955 (1180)
                      +.+-.+.+|+.|+|++|+|+ .+........+|+.|+||.|+++ .+|+++..                           
T Consensus       239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK---------------------------  289 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK---------------------------  289 (1255)
T ss_pred             HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh---------------------------
Confidence            55555555555555555554 23333344445555555555554 23333322                           


Q ss_pred             CchhhhhhhhhhhccccchhcccchhccccceEEccCCcccC-CCCccccCCCCCCEEeCccccccccccccccCCCCCC
Q 001036          956 GSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 1034 (1180)
Q Consensus       956 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~ 1034 (1180)
                                                ++.|+.|.+.+|+++- -||..||.+..|+++..++|.+. ..|+.+..+..|+
T Consensus       290 --------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~  342 (1255)
T KOG0444|consen  290 --------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ  342 (1255)
T ss_pred             --------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence                                      2244555555555432 25555555555555555555555 5555555555555


Q ss_pred             EEECcCCcCcccCCccccCCCCCCEEEcCCC
Q 001036         1035 SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 1065 (1180)
Q Consensus      1035 ~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N 1065 (1180)
                      .|.|++|+|- .+|+++.-++.|..||+..|
T Consensus       343 kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  343 KLKLDHNRLI-TLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             Hhccccccee-echhhhhhcCCcceeeccCC
Confidence            5555555555 55555555555555555555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=5.3e-32  Score=292.19  Aligned_cols=384  Identities=27%  Similarity=0.363  Sum_probs=241.8

Q ss_pred             ceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEc
Q 001036          568 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV  647 (1180)
Q Consensus       568 L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  647 (1180)
                      .+-.++++|......||.....++.++.|.+.+.++. .+|+. ++.+.+|+.|.+.+|++... ...+..++.|+.+++
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE-L~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE-LSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV   85 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH-HHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence            5667888888888888988888888888888776654 57777 45788888888888887643 345567777888888


Q ss_pred             cCCcccc-cCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcc
Q 001036          648 SNNNFQG-HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL  726 (1180)
Q Consensus       648 ~~n~l~~-~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l  726 (1180)
                      ..|++.. -||.+++. +..|..||+|+|+++ ..|..+..-+++-+|+||+|+|. +||..++.+++.|-+||||+|++
T Consensus        86 R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence            7777653 47777776 777888888888877 56777777777778888888887 77877777777777777777777


Q ss_pred             cccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCC-CCCcccccCCCCCCeEEccCCcCCCCCCcc
Q 001036          727 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS-GKIPRWLGNLKGLQHIVMPKNHLEGPIPVE  805 (1180)
Q Consensus       727 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~  805 (1180)
                      . ..|+.+..+..|++|+|++|.+...--..+..+++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+. .+|+.
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence            6 34555566666666666666654332223334555555555554422 234555555555555555555554 44444


Q ss_pred             ccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCC
Q 001036          806 FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS  885 (1180)
Q Consensus       806 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~  885 (1180)
                      +..+++|+.|+||+|+++                                                 .+.-..+.-.+|+
T Consensus       241 ly~l~~LrrLNLS~N~it-------------------------------------------------eL~~~~~~W~~lE  271 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKIT-------------------------------------------------ELNMTEGEWENLE  271 (1255)
T ss_pred             HhhhhhhheeccCcCcee-------------------------------------------------eeeccHHHHhhhh
Confidence            445555555555555443                                                 1222223333444


Q ss_pred             EEecCCCccccCCCccccCCCCCCEEECcCCcCcc-cCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhh
Q 001036          886 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE  964 (1180)
Q Consensus       886 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  964 (1180)
                      .|+|+.|+++ .+|.+++.++.|+.|.+.+|+++- -+|+.++.+.                                  
T Consensus       272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~----------------------------------  316 (1255)
T KOG0444|consen  272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI----------------------------------  316 (1255)
T ss_pred             hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh----------------------------------
Confidence            4444444444 344444444455545444444431 1333333322                                  


Q ss_pred             hhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCc
Q 001036          965 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044 (1180)
Q Consensus       965 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1044 (1180)
                                         .|+.+..++|++. ..|..+..+..|+.|.|++|++. ..|+.+.-++.|+.|||..|.=-
T Consensus       317 -------------------~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  317 -------------------QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             -------------------hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence                               4455555666665 67777888888888888888887 67888888888888888888644


Q ss_pred             ccCCccccCCCCCCEEEcCC
Q 001036         1045 GKIPRQLVDLNTLAIFIVAY 1064 (1180)
Q Consensus      1045 g~ip~~l~~l~~L~~l~ls~ 1064 (1180)
                      -..|.--..-+.|+..|+.+
T Consensus       376 VMPPKP~da~~~lefYNIDF  395 (1255)
T KOG0444|consen  376 VMPPKPNDARKKLEFYNIDF  395 (1255)
T ss_pred             cCCCCcchhhhcceeeecce
Confidence            23333222234566655544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=6.5e-32  Score=306.78  Aligned_cols=486  Identities=26%  Similarity=0.320  Sum_probs=332.3

Q ss_pred             CCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEEe
Q 001036          467 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD  546 (1180)
Q Consensus       467 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~  546 (1180)
                      .++.|++..|.+....-+...+.-+|+.|++++|.+. .+ |..+..+.+|+.|.++.|.+. .+| ....++.+|+++.
T Consensus        22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~f-p~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~~l~~ln   97 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SF-PIQITLLSHLRQLNLSRNYIR-SVP-SSCSNMRNLQYLN   97 (1081)
T ss_pred             HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cC-CchhhhHHHHhhcccchhhHh-hCc-hhhhhhhcchhhe
Confidence            3666777777544322233444555788888877775 55 566777777778888777765 333 3355666777777


Q ss_pred             cCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCC
Q 001036          547 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND  626 (1180)
Q Consensus       547 l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n  626 (1180)
                      +.+|.+..                            .|..+..+.+|++|+++.|++. .+|.. ...++.++.+..++|
T Consensus        98 L~~n~l~~----------------------------lP~~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt~~~~~~~s~N  147 (1081)
T KOG0618|consen   98 LKNNRLQS----------------------------LPASISELKNLQYLDLSFNHFG-PIPLV-IEVLTAEEELAASNN  147 (1081)
T ss_pred             eccchhhc----------------------------CchhHHhhhcccccccchhccC-CCchh-HHhhhHHHHHhhhcc
Confidence            77666542                            3445555666667777776653 45554 346667777777777


Q ss_pred             cccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccC
Q 001036          627 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP  706 (1180)
Q Consensus       627 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip  706 (1180)
                      ......    +. ..++.+++..|.+.+.++.++.. +..  .|++.+|.+. .  ..+.++..|+.+....|+++ .+.
T Consensus       148 ~~~~~l----g~-~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls-~l~  215 (1081)
T KOG0618|consen  148 EKIQRL----GQ-TSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLS-ELE  215 (1081)
T ss_pred             hhhhhh----cc-ccchhhhhhhhhcccchhcchhh-hhe--eeecccchhh-h--hhhhhccchhhhhhhhcccc-eEE
Confidence            222111    11 12677788888887777776654 334  6888888877 2  24566778888888888886 333


Q ss_pred             hhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCC
Q 001036          707 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK  786 (1180)
Q Consensus       707 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  786 (1180)
                      .    ..++|+.|+.++|.++...+.  ..-.+|+++++++|++++ +|++++.+.+|+.++..+|+++ .+|..+...+
T Consensus       216 ~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~  287 (1081)
T KOG0618|consen  216 I----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRIT  287 (1081)
T ss_pred             e----cCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhh
Confidence            2    357888888888888733322  234578888888888884 5588888889999999888885 7888888888


Q ss_pred             CCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcC---CCcccEEEcCCcccccccCcccccCCCCCcEE
Q 001036          787 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY---PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL  863 (1180)
Q Consensus       787 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  863 (1180)
                      +|+.|.+..|.+. .+|....+++.|+.|+|..|++. ++|+.+.   ..++..++.+.|.+.. .|...=...+.|+.|
T Consensus       288 ~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~L  364 (1081)
T KOG0618|consen  288 SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQEL  364 (1081)
T ss_pred             hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHH
Confidence            8888888888887 56777777888899999998886 5665432   2346667777776652 333223345678888


Q ss_pred             ECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCC
Q 001036          864 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK  943 (1180)
Q Consensus       864 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~  943 (1180)
                      .+.+|.++...-..+.+..+|++|+|++|++.......+.++..|+.|+||+|+++. +|.+..++.             
T Consensus       365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~-------------  430 (1081)
T KOG0618|consen  365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLG-------------  430 (1081)
T ss_pred             HHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhh-------------
Confidence            888888887776777888888888888888875555567788888888888888874 445554433             


Q ss_pred             CCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccc
Q 001036          944 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 1023 (1180)
Q Consensus       944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~ 1023 (1180)
                                                              .|++|..-+|++. ..| ++.++++|+++|+|.|+|+...
T Consensus       431 ----------------------------------------~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~  468 (1081)
T KOG0618|consen  431 ----------------------------------------RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT  468 (1081)
T ss_pred             ----------------------------------------hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence                                                    5777777888887 566 7888888888888888887543


Q ss_pred             cccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCC
Q 001036         1024 PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 1065 (1180)
Q Consensus      1024 p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N 1065 (1180)
                      -..-..-++|+.|||++|.=.-..-..|..+..+..+++.-|
T Consensus       469 l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  469 LPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            322222378888888888733234445556666666666666

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-30  Score=296.79  Aligned_cols=474  Identities=27%  Similarity=0.329  Sum_probs=362.5

Q ss_pred             cChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhh
Q 001036          583 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD  662 (1180)
Q Consensus       583 ~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~  662 (1180)
                      +|..+..-..+..+++.+|-+... |-.+.+.+-+|+.|++++|.+. .+|.++..+..|+.|.++.|.+. ..|.....
T Consensus        13 ip~~i~~~~~~~~ln~~~N~~l~~-pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~   89 (1081)
T KOG0618|consen   13 IPEQILNNEALQILNLRRNSLLSR-PLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSN   89 (1081)
T ss_pred             cchhhccHHHHHhhhccccccccC-chHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhh
Confidence            344433333467777777766543 3444556667999999999876 46777888999999999999998 88877665


Q ss_pred             cCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCce
Q 001036          663 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW  742 (1180)
Q Consensus       663 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  742 (1180)
                       +.+|+++.|.+|.+. ..|..+..+.+|+.|++++|++. .+|..+. .++.++.+..++|......+    ... ++.
T Consensus        90 -~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~lg----~~~-ik~  160 (1081)
T KOG0618|consen   90 -MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQRLG----QTS-IKK  160 (1081)
T ss_pred             -hhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhhhc----ccc-chh
Confidence             899999999999888 78999999999999999999997 9998885 78899999999993322222    222 889


Q ss_pred             eeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcc
Q 001036          743 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI  822 (1180)
Q Consensus       743 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  822 (1180)
                      +++..|.+.+.++..+..++.  .|+|+.|.+.   -..+.++.+|+.+....|++...    -..-++|+.|+.++|.+
T Consensus       161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l  231 (1081)
T KOG0618|consen  161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPL  231 (1081)
T ss_pred             hhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcc
Confidence            999999999998888887777  8999999986   23467788999999999988632    12457899999999999


Q ss_pred             cccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccc
Q 001036          823 SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL  902 (1180)
Q Consensus       823 ~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  902 (1180)
                      + ..-..+.+.++++++++.|++++ +|. ....+.+|+.++..+|.++ .+|..+...++|+.|....|.+. -+|...
T Consensus       232 ~-~~~~~p~p~nl~~~dis~n~l~~-lp~-wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~l  306 (1081)
T KOG0618|consen  232 T-TLDVHPVPLNLQYLDISHNNLSN-LPE-WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFL  306 (1081)
T ss_pred             e-eeccccccccceeeecchhhhhc-chH-HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcc
Confidence            8 56666778899999999999984 775 8999999999999999996 78888889999999999999998 688888


Q ss_pred             cCCCCCCEEECcCCcCcccCCCCccCccc-ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccch--hcccc
Q 001036          903 CRLNQLQLLDLSDNNLHGLIPSCFDNTTL-HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA--YAYQG  979 (1180)
Q Consensus       903 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  979 (1180)
                      ..+++|+.|||..|++...++..|.-... ....+..... .+...+      .+.........+.+..+...  ..+..
T Consensus       307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~------~~e~~~~~Lq~LylanN~Ltd~c~p~l  379 (1081)
T KOG0618|consen  307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK-LSTLPS------YEENNHAALQELYLANNHLTDSCFPVL  379 (1081)
T ss_pred             cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc-cccccc------ccchhhHHHHHHHHhcCcccccchhhh
Confidence            89999999999999998666544433221 1111111110 000000      01111122333333333322  12223


Q ss_pred             hhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCE
Q 001036          980 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 1059 (1180)
Q Consensus       980 ~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~ 1059 (1180)
                      .....|+.|+|++|+|.......+.++..|+.|+||+|+++ .+|.++.++..|++|...+|++. ..| .+..++.|+.
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence            44668999999999998444445899999999999999999 88999999999999999999998 677 8999999999


Q ss_pred             EEcCCCcCccc-CCCcccccccCCccccCCCCCCC
Q 001036         1060 FIVAYNNLSGK-IPEWTAQFATFNKSSYDGNPFLC 1093 (1180)
Q Consensus      1060 l~ls~N~l~g~-ip~~~~~~~~~~~~~~~~N~~lc 1093 (1180)
                      +|+|.|+|+-. +|. .....++...++.||+++-
T Consensus       457 lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             Eecccchhhhhhhhh-hCCCcccceeeccCCcccc
Confidence            99999999853 333 3334678888999999753

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=2.7e-26  Score=236.85  Aligned_cols=294  Identities=21%  Similarity=0.172  Sum_probs=198.2

Q ss_pred             CcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccC-cccccc
Q 001036          626 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN-NKLTGE  704 (1180)
Q Consensus       626 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~  704 (1180)
                      |.-.|....+-.-......++|..|.|+ .||+..|..+++|+.||||+|+|+.+-|++|.++.+|..|-+.+ |+|+ .
T Consensus        53 Cr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~  130 (498)
T KOG4237|consen   53 CRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-D  130 (498)
T ss_pred             ccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-h
Confidence            3334433444445567778889999998 89988888899999999999999999999999998887777666 8888 8


Q ss_pred             cChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccC
Q 001036          705 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN  784 (1180)
Q Consensus       705 ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  784 (1180)
                      +|...|.++.+|+.|.+.-|++.....+.|..+++|..|.+.+|.+..+-..+|..+.+++.+.+..|.+..     ..+
T Consensus       131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCn  205 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCN  205 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccc
Confidence            999998899999999999999988888889999999999999998886555688888888888888887431     122


Q ss_pred             CCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCC--cccEEEcCCcccccccCcccccCCCCCcE
Q 001036          785 LKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIKQVHLSKNMLHGQLKEGTFFNCSSLVT  862 (1180)
Q Consensus       785 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  862 (1180)
                      ++.+.....       ..|..+++.....-..+.++++...-+..|...  ++..-..+.+...+.-|...|..+++|+.
T Consensus       206 L~wla~~~a-------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~  278 (498)
T KOG4237|consen  206 LPWLADDLA-------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRK  278 (498)
T ss_pred             cchhhhHHh-------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceE
Confidence            222221111       112223333333333333333332222222111  11111112222334455556777777777


Q ss_pred             EECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036          863 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE  933 (1180)
Q Consensus       863 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  933 (1180)
                      |+|++|+++++-+.+|.++..+++|.|..|++.......|.++..|+.|+|.+|+|+..-|..|..+..+.
T Consensus       279 lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  279 LNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             eccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            77777777777777777777777777777777766666777777777777777777777777776654433

>PLN03210 Resistant to P

Probab=99.90  E-value=4.7e-22  Score=257.48  Aligned_cols=339  Identities=22%  Similarity=0.274  Sum_probs=197.0

Q ss_pred             CCCCCCCccEEEccCCc------ccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChh
Q 001036          635 PIHSHKRLRFLDVSNNN------FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH  708 (1180)
Q Consensus       635 ~~~~~~~L~~L~l~~n~------l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~  708 (1180)
                      .|..+.+|+.|.+..+.      +...+|..+....++|+.|.+.++.+. .+|..| ...+|+.|++++|++. .+|..
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence            34556677777665442      222455554443345777777666665 455555 3566777777777665 55554


Q ss_pred             hhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCC
Q 001036          709 LAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGL  788 (1180)
Q Consensus       709 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  788 (1180)
                      . ..+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|
T Consensus       630 ~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        630 V-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             c-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            4 3566677777766554444443 5566677777777666555666666666777777776665444566544 56667


Q ss_pred             CeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccc---c---ccCcccccCCCCCcE
Q 001036          789 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH---G---QLKEGTFFNCSSLVT  862 (1180)
Q Consensus       789 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~---~---~~~~~~~~~~~~L~~  862 (1180)
                      +.|++++|...+.+|..   .++|+.|++++|.+. .+|..+...+|+.|.+.++...   +   .++...+...++|+.
T Consensus       707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            77777666554444432   345666666666654 4555544455666655543211   0   011112223456666


Q ss_pred             EECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCC
Q 001036          863 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD  942 (1180)
Q Consensus       863 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~  942 (1180)
                      |++++|...+.+|.+++++++|+.|++++|...+.+|..+ ++++|+.|++++|..-..+|..                 
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------------  844 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-----------------  844 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------
Confidence            6666666555666666666666666666654444555544 5666666666665433222211                 


Q ss_pred             CCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcc-ccccc
Q 001036          943 KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH-NNLTG 1021 (1180)
Q Consensus       943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~-N~l~g 1021 (1180)
                                                             .++++.|+|++|.++ .+|..+..+++|++|+|++ |+++ 
T Consensus       845 ---------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-  883 (1153)
T PLN03210        845 ---------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-  883 (1153)
T ss_pred             ---------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-
Confidence                                                   124666777777776 5666677777777777766 3444 


Q ss_pred             cccccccCCCCCCEEECcCCc
Q 001036         1022 TIPLTFSNLRHIESLDLSYNK 1042 (1180)
Q Consensus      1022 ~~p~~~~~l~~L~~L~Ls~N~ 1042 (1180)
                      .+|..+..+++|+.++++++.
T Consensus       884 ~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        884 RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccCcccccccCCCeeecCCCc
Confidence            466666667777777776663

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=4.1e-22  Score=258.03  Aligned_cols=339  Identities=22%  Similarity=0.274  Sum_probs=222.2

Q ss_pred             ChhhhhcCCCCcEEEccCCc------CCccCCccccCcc-cCcEEEccCcccccccChhhhhcCCCCCEEEccCCccccc
Q 001036          657 PVEIGDILPSLVYFNISMNA------LDGSIPSSFGNVI-FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH  729 (1180)
Q Consensus       657 p~~~~~~l~~L~~L~ls~n~------l~~~~p~~~~~l~-~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~  729 (1180)
                      ....+..+++|+.|.+..+.      +...+|..|..++ .|+.|++.++.+. .+|..+  ...+|+.|++++|++. .
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence            33444457777777775543      2234555565553 5777777777776 677665  3577777777777776 3


Q ss_pred             ccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCC
Q 001036          730 IFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL  809 (1180)
Q Consensus       730 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  809 (1180)
                      ++..+..+++|+.|+|++|...+.+| .++.+++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ ++
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            55666777777777777766555555 36677777777777776666777777777777777777765555666554 57


Q ss_pred             CCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccC-------ccccchhhhcCC
Q 001036          810 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL-------NGSIPDWIDGLS  882 (1180)
Q Consensus       810 ~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l-------~~~~p~~~~~l~  882 (1180)
                      ++|+.|++++|...+.+|..  ..+++.|++++|.+. .+|. .+ .+++|+.|++.++..       ....|..+...+
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-cc-cccccccccccccchhhccccccccchhhhhccc
Confidence            77777777777666666643  346777777777764 4554 22 466777777766332       112222333456


Q ss_pred             CCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhh
Q 001036          883 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI  962 (1180)
Q Consensus       883 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  962 (1180)
                      +|+.|++++|...+.+|..++++++|+.|++++|..-+.+|... +                                  
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~----------------------------------  823 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N----------------------------------  823 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C----------------------------------
Confidence            77777777777776777777777777777777765444444332 1                                  


Q ss_pred             hhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcC-C
Q 001036          963 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY-N 1041 (1180)
Q Consensus       963 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~-N 1041 (1180)
                                         +++|+.|++++|..-..+|..   .++|+.|+|++|.++ .+|.++..+++|+.|+|++ |
T Consensus       824 -------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        824 -------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             -------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence                               235777777776554455543   246777777777777 5677777777777777777 4


Q ss_pred             cCcccCCccccCCCCCCEEEcCCC
Q 001036         1042 KLSGKIPRQLVDLNTLAIFIVAYN 1065 (1180)
Q Consensus      1042 ~l~g~ip~~l~~l~~L~~l~ls~N 1065 (1180)
                      +|+ .+|..+..++.|+.++++++
T Consensus       881 ~L~-~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        881 NLQ-RVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CcC-ccCcccccccCCCeeecCCC
Confidence            555 46667777777777777766

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.6e-21  Score=232.15  Aligned_cols=264  Identities=27%  Similarity=0.347  Sum_probs=130.6

Q ss_pred             CCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeec
Q 001036          666 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL  745 (1180)
Q Consensus       666 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  745 (1180)
                      .-..|+++.|.++ .+|..+.  .+|+.|++++|+++ .+|.    ..++|++|++++|+++.. |..   .++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PVL---PPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cCc---ccccceeec
Confidence            3456677777666 4555553  25666666666666 4553    134555555555555532 221   234444455


Q ss_pred             cCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 001036          746 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS  825 (1180)
Q Consensus       746 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  825 (1180)
                      ++|.+.                         .+|..   .++|+.|++++|+++. +|.   ..++|+.|++++|++++ 
T Consensus       270 s~N~L~-------------------------~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-  316 (788)
T PRK15387        270 FSNPLT-------------------------HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-  316 (788)
T ss_pred             cCCchh-------------------------hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-
Confidence            544444                         22221   1234444444444442 222   12345555555555542 


Q ss_pred             CCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCC
Q 001036          826 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL  905 (1180)
Q Consensus       826 ~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  905 (1180)
                      +|.  .+.+|+.|++++|.+.+ +|.  +  ..+|+.|+|++|+|++ +|..   .++|+.|++++|++++ +|..   .
T Consensus       317 Lp~--lp~~L~~L~Ls~N~L~~-LP~--l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~  381 (788)
T PRK15387        317 LPA--LPSELCKLWAYNNQLTS-LPT--L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P  381 (788)
T ss_pred             CCC--CcccccccccccCcccc-ccc--c--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence            222  12233444444444432 332  1  1356666666666663 3332   2345556666666653 4432   2


Q ss_pred             CCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhcccc
Q 001036          906 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL  985 (1180)
Q Consensus       906 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  985 (1180)
                      .+|+.|++++|+|++ +|...                                                        +.|
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l~--------------------------------------------------------s~L  404 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVLP--------------------------------------------------------SEL  404 (788)
T ss_pred             cccceEEecCCcccC-CCCcc--------------------------------------------------------cCC
Confidence            345666666666653 22110                                                        135


Q ss_pred             ceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccc
Q 001036          986 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 1051 (1180)
Q Consensus       986 ~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l 1051 (1180)
                      +.||+++|+|++ +|...   .+|+.|++++|+|+ .+|..++++++|+.|+|++|+|+|.+|..+
T Consensus       405 ~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        405 KELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            556666666653 44332   24555666666665 456666666666666666666666655555

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=8.8e-21  Score=225.81  Aligned_cols=267  Identities=27%  Similarity=0.330  Sum_probs=197.7

Q ss_pred             CccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEE
Q 001036          641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS  720 (1180)
Q Consensus       641 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~  720 (1180)
                      .-..|+++++.++ .+|..+.   ++|+.|++++|+++. +|..   +++|++|++++|+++ .+|..    .++|+.|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc----ccccceee
Confidence            4568999999998 8998764   589999999999995 5543   578999999999998 77753    47899999


Q ss_pred             ccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCC
Q 001036          721 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG  800 (1180)
Q Consensus       721 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  800 (1180)
                      +++|.++. +|..   .++|+.|++++|+++. +|.   ..++|+.|++++|++++ +|..   ..+|+.|++++|++++
T Consensus       269 Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        269 IFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS  336 (788)
T ss_pred             ccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence            99999984 3432   3568889999998884 454   24678888888888874 4542   2356677777777764


Q ss_pred             CCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhc
Q 001036          801 PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG  880 (1180)
Q Consensus       801 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~  880 (1180)
                       +|..   ..+|+.|++++|++++ +|                       . .   .++|+.|++++|++++ +|..   
T Consensus       337 -LP~l---p~~Lq~LdLS~N~Ls~-LP-----------------------~-l---p~~L~~L~Ls~N~L~~-LP~l---  380 (788)
T PRK15387        337 -LPTL---PSGLQELSVSDNQLAS-LP-----------------------T-L---PSELYKLWAYNNRLTS-LPAL---  380 (788)
T ss_pred             -cccc---ccccceEecCCCccCC-CC-----------------------C-C---Ccccceehhhcccccc-Cccc---
Confidence             4421   2466777777777662 33                       2 1   1356667777777774 4543   


Q ss_pred             CCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhh
Q 001036          881 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK  960 (1180)
Q Consensus       881 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  960 (1180)
                      ..+|+.|++++|++++ +|..   .++|+.|++++|++++ +|...                                  
T Consensus       381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~----------------------------------  421 (788)
T PRK15387        381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP----------------------------------  421 (788)
T ss_pred             ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch----------------------------------
Confidence            2467888888888874 5543   3578899999999885 44321                                  


Q ss_pred             hhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCC
Q 001036          961 KILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 1030 (1180)
Q Consensus       961 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l 1030 (1180)
                                            ..|+.|++++|+|+ .+|..++++++|+.|+|++|.|+|.+|..+..+
T Consensus       422 ----------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        422 ----------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             ----------------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence                                  14667999999998 789999999999999999999999999887544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=2.5e-23  Score=215.06  Aligned_cols=387  Identities=21%  Similarity=0.192  Sum_probs=239.0

Q ss_pred             CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccC-CccccccCcccccCCCCCcE
Q 001036          466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN-NHFRIPVSLEPLFNHSKLKI  544 (1180)
Q Consensus       466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~l~~l~~L~~  544 (1180)
                      +.-++++|..|.|+...|.+|+.+++|+.|||++|.++ .|.+.+|.++++|.+|.+.+ |+++ .++...|.++..|+.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR  144 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence            35678889999998888888999999999999999987 67788899998888887776 6666 677777888777777


Q ss_pred             EecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEcc
Q 001036          545 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV  624 (1180)
Q Consensus       545 l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~  624 (1180)
                      |.+..|++..                                                    ++...+..++++..|.+.
T Consensus       145 LllNan~i~C----------------------------------------------------ir~~al~dL~~l~lLsly  172 (498)
T KOG4237|consen  145 LLLNANHINC----------------------------------------------------IRQDALRDLPSLSLLSLY  172 (498)
T ss_pred             HhcChhhhcc----------------------------------------------------hhHHHHHHhhhcchhccc
Confidence            7666665432                                                    334446788888899999


Q ss_pred             CCcccCCCCCCCCCCCCccEEEccCCcccc------------cCChhhhhcCCCCcEEEccCCcCCccCCccccCc-ccC
Q 001036          625 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQG------------HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV-IFL  691 (1180)
Q Consensus       625 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l-~~L  691 (1180)
                      +|.+...-...+..+..++.+.+..|.+..            ..|...+ +..-..-..+.+.++..+.+..|... .++
T Consensus       173 Dn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets-garc~~p~rl~~~Ri~q~~a~kf~c~~esl  251 (498)
T KOG4237|consen  173 DNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS-GARCVSPYRLYYKRINQEDARKFLCSLESL  251 (498)
T ss_pred             chhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc-cceecchHHHHHHHhcccchhhhhhhHHhH
Confidence            998887766778888888888888877431            1111111 12222223333344433333333221 111


Q ss_pred             cEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcC
Q 001036          692 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN  771 (1180)
Q Consensus       692 ~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~  771 (1180)
                      ..=-.+.+...+.-|..-|..+++|+.|+|++|+++++-+.+|.+...++.|.|..|++..+....|.++..|++|+|.+
T Consensus       252 ~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~  331 (498)
T KOG4237|consen  252 PSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD  331 (498)
T ss_pred             HHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC
Confidence            11112223333466666677778888888888888877777788888888888888877766666777777888888888


Q ss_pred             CcCCCCCcccccCCCCCCeEEccCCcCCCC-----------------CCccccCCCCCCEEEccCCccccc---CCCCc-
Q 001036          772 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGP-----------------IPVEFCRLDSLQILDISDNNISGS---LPSCF-  830 (1180)
Q Consensus       772 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~l~~L~~L~l~~n~l~~~---~p~~~-  830 (1180)
                      |+|+...|.+|..+.+|.+|.+-.|.+.-.                 .|. -+.-..++.+++++..+...   .|+.. 
T Consensus       332 N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~  410 (498)
T KOG4237|consen  332 NQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR-CQSPGFVRQIPISDVAFGDFRCGGPEELG  410 (498)
T ss_pred             CeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC-CCCCchhccccchhccccccccCCccccC
Confidence            887777777777777777777766654310                 000 01112344444444433211   11111 


Q ss_pred             ------CCC---cc-cEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCc
Q 001036          831 ------YPL---SI-KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI  900 (1180)
Q Consensus       831 ------~~~---~L-~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  900 (1180)
                            .|+   -+ +....|+..+ ..+|.+.   -...++|++.+|.++ .+|..  .+.+| .+|+++|++...-..
T Consensus       411 ~~~s~~cP~~c~c~~tVvRcSnk~l-k~lp~~i---P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~  482 (498)
T KOG4237|consen  411 CLTSSPCPPPCTCLDTVVRCSNKLL-KLLPRGI---PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNY  482 (498)
T ss_pred             CCCCCCCCCCcchhhhhHhhcccch-hhcCCCC---CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcc
Confidence                  010   01 1112222222 2233311   123456677777776 44544  44556 677777777765566


Q ss_pred             cccCCCCCCEEECcCC
Q 001036          901 QLCRLNQLQLLDLSDN  916 (1180)
Q Consensus       901 ~~~~l~~L~~L~Ls~N  916 (1180)
                      .|.++++|.+|.||+|
T Consensus       483 tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  483 TFSNMTQLSTLILSYN  498 (498)
T ss_pred             cccchhhhheeEEecC
Confidence            6777777777777765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=5.1e-19  Score=212.81  Aligned_cols=203  Identities=26%  Similarity=0.387  Sum_probs=105.3

Q ss_pred             CCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceee
Q 001036          665 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL  744 (1180)
Q Consensus       665 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  744 (1180)
                      .+...|+++++.++. +|..+.  ..|+.|++++|+++ .+|..++   .+|+.|++++|+++. +|..+.  ++|+.|+
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEE
Confidence            356678888877773 555443  46777888888777 6776553   467777777777663 343332  3456666


Q ss_pred             ccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 001036          745 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG  824 (1180)
Q Consensus       745 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  824 (1180)
                      |++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|+++ 
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-  317 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-  317 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-
Confidence            6666555 3343332  34555555555554 3444332  244444444444442 222211  23334444444433 


Q ss_pred             cCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccC
Q 001036          825 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR  904 (1180)
Q Consensus       825 ~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  904 (1180)
                                            . +|. .+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+. 
T Consensus       318 ----------------------~-LP~-~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-  366 (754)
T PRK15370        318 ----------------------A-LPE-TL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-  366 (754)
T ss_pred             ----------------------c-CCc-cc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence                                  1 222 11  1355566666666653 444332  45666666666655 3444332 


Q ss_pred             CCCCCEEECcCCcCc
Q 001036          905 LNQLQLLDLSDNNLH  919 (1180)
Q Consensus       905 l~~L~~L~Ls~N~l~  919 (1180)
                       ++|+.|++++|+++
T Consensus       367 -~~L~~LdLs~N~Lt  380 (754)
T PRK15370        367 -PTITTLDVSRNALT  380 (754)
T ss_pred             -CCcCEEECCCCcCC
Confidence             45666666666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=7.4e-19  Score=211.43  Aligned_cols=220  Identities=26%  Similarity=0.406  Sum_probs=104.6

Q ss_pred             EEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccC
Q 001036          644 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN  723 (1180)
Q Consensus       644 ~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~  723 (1180)
                      .|+++++.++ .+|..+   .+.++.|++++|+++. +|..+.  .+|+.|++++|+++ .+|..+.   .+|+.|++++
T Consensus       182 ~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~  250 (754)
T PRK15370        182 ELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSI  250 (754)
T ss_pred             EEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcC
Confidence            4444444444 344332   2345555555555552 333222  24555555555554 4454332   3455555555


Q ss_pred             CcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCC
Q 001036          724 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP  803 (1180)
Q Consensus       724 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  803 (1180)
                      |.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++. +|
T Consensus       251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CC
Confidence            5554 2333332  35566666666655 2444332  35666666666665 3444332  356677777777663 34


Q ss_pred             ccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCC
Q 001036          804 VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ  883 (1180)
Q Consensus       804 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~  883 (1180)
                      ..+  .++|+.|++++|.+++ +|..+ +.+|+.|++++|++. .+|. .+  .++|+.|++++|+++. +|..+.  .+
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l-~~sL~~L~Ls~N~L~-~LP~-~l--p~~L~~LdLs~N~Lt~-LP~~l~--~s  389 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALTS-LPASL-PPELQVLDVSKNQIT-VLPE-TL--PPTITTLDVSRNALTN-LPENLP--AA  389 (754)
T ss_pred             ccc--cccceeccccCCcccc-CChhh-cCcccEEECCCCCCC-cCCh-hh--cCCcCEEECCCCcCCC-CCHhHH--HH
Confidence            333  2467777777777663 34322 123333333333332 2222 11  1345555555555542 333332  13


Q ss_pred             CCEEecCCCccc
Q 001036          884 LSHLNLAHNNLE  895 (1180)
Q Consensus       884 L~~L~L~~N~l~  895 (1180)
                      |+.|++++|++.
T Consensus       390 L~~LdLs~N~L~  401 (754)
T PRK15370        390 LQIMQASRNNLV  401 (754)
T ss_pred             HHHHhhccCCcc
Confidence            444444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=2.4e-18  Score=194.59  Aligned_cols=66  Identities=29%  Similarity=0.428  Sum_probs=34.2

Q ss_pred             ccCCCCCcEEECcCccCccc----cchhhhcCCCCCEEecCCCccccC----CCccccCCCCCCEEECcCCcCc
Q 001036          854 FFNCSSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLAHNNLEGE----VPIQLCRLNQLQLLDLSDNNLH  919 (1180)
Q Consensus       854 ~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~  919 (1180)
                      +..+++|+.|++++|.+++.    ++..+..+++|+.|++++|.+.+.    ++..+..+++|++|++++|+++
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            44455566666666665531    223334445666666666655422    2233444555666666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=1.5e-18  Score=196.17  Aligned_cols=218  Identities=25%  Similarity=0.251  Sum_probs=116.8

Q ss_pred             ccccCCCCCCeEEccCCcCCCCCCccccCCCC---CCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccC
Q 001036          780 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS---LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN  856 (1180)
Q Consensus       780 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  856 (1180)
                      ..+..+++|+.|++++|.+.+..+..+..+..   |++|++++|++++...                   ..+.. .+..
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~-------------------~~l~~-~l~~  134 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL-------------------RLLAK-GLKD  134 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH-------------------HHHHH-HHHh
Confidence            34455556666666666655444444433333   6666666666542100                   01111 3344


Q ss_pred             C-CCCcEEECcCccCcc----ccchhhhcCCCCCEEecCCCccccC----CCccccCCCCCCEEECcCCcCcccCCCCcc
Q 001036          857 C-SSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLNLAHNNLEGE----VPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  927 (1180)
Q Consensus       857 ~-~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  927 (1180)
                      + ++|+.|++++|.+++    .++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.....+.
T Consensus       135 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  214 (319)
T cd00116         135 LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA  214 (319)
T ss_pred             CCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence            4 677888888888773    2344566667788888888877742    233445556788888887776633211111


Q ss_pred             CcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCcccc---
Q 001036          928 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG--- 1004 (1180)
Q Consensus       928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~--- 1004 (1180)
                      ..                                                 ...++.|+.||+++|.+++.....+.   
T Consensus       215 ~~-------------------------------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~  245 (319)
T cd00116         215 ET-------------------------------------------------LASLKSLEVLNLGDNNLTDAGAAALASAL  245 (319)
T ss_pred             HH-------------------------------------------------hcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence            00                                                 01123566777777766642222221   


Q ss_pred             --CCCCCCEEeCcccccc----ccccccccCCCCCCEEECcCCcCccc----CCccccCC-CCCCEEEcCCCc
Q 001036         1005 --NLTRIQTLNLSHNNLT----GTIPLTFSNLRHIESLDLSYNKLSGK----IPRQLVDL-NTLAIFIVAYNN 1066 (1180)
Q Consensus      1005 --~l~~L~~L~Ls~N~l~----g~~p~~~~~l~~L~~L~Ls~N~l~g~----ip~~l~~l-~~L~~l~ls~N~ 1066 (1180)
                        ..+.|+.|++++|.++    +.++..+..+++|+.+|+++|.++..    ....+... +.|+.+++.+|+
T Consensus       246 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence              2356666666666665    22334445556666666666666633    22233333 455556655554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=3.4e-18  Score=156.43  Aligned_cols=163  Identities=31%  Similarity=0.502  Sum_probs=130.1

Q ss_pred             CcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEE
Q 001036          833 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD  912 (1180)
Q Consensus       833 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  912 (1180)
                      ..++.|.+|+|+++ .+|+ .+..+.+|+.|++++|+++ ..|..+..+++|+.|+++-|++. ..|..|+.++.|++||
T Consensus        33 s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            34444444444444 4555 6788899999999999998 67888999999999999999997 7899999999999999


Q ss_pred             CcCCcCccc-CCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEcc
Q 001036          913 LSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS  991 (1180)
Q Consensus       913 Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  991 (1180)
                      |++|++... .|+-|-.                                                     ++.|+.|+|+
T Consensus       109 ltynnl~e~~lpgnff~-----------------------------------------------------m~tlralyl~  135 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFY-----------------------------------------------------MTTLRALYLG  135 (264)
T ss_pred             ccccccccccCCcchhH-----------------------------------------------------HHHHHHHHhc
Confidence            999988743 3433322                                                     3467888899


Q ss_pred             CCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCC
Q 001036          992 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 1055 (1180)
Q Consensus       992 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 1055 (1180)
                      .|.+. .+|+.++++++|+.|.+..|.+- ..|..++.+++|+.|.+.+|+++ .+|..++++.
T Consensus       136 dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  136 DNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             CCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence            99998 78888999999999999999888 78888999999999999999988 7777766643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.5e-17  Score=152.21  Aligned_cols=167  Identities=31%  Similarity=0.494  Sum_probs=150.1

Q ss_pred             ccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036          854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE  933 (1180)
Q Consensus       854 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  933 (1180)
                      +.++.+.+.|.||+|+++ .+|..+..+.+|+.|++++|++. ..|.++..++.|+.|+++-|++. ..|..|+.+.   
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p---  102 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP---  102 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc---
Confidence            556788899999999999 66778999999999999999998 78999999999999999999987 5677777643   


Q ss_pred             ccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccC-CCCccccCCCCCCEE
Q 001036          934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTL 1012 (1180)
Q Consensus       934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~~p~~~~~l~~L~~L 1012 (1180)
                                                                        .|..|||++|++.. ..|..|..++.|+-|
T Consensus       103 --------------------------------------------------~levldltynnl~e~~lpgnff~m~tlral  132 (264)
T KOG0617|consen  103 --------------------------------------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRAL  132 (264)
T ss_pred             --------------------------------------------------hhhhhhccccccccccCCcchhHHHHHHHH
Confidence                                                              68889999999975 579999999999999


Q ss_pred             eCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccc
Q 001036         1013 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA 1079 (1180)
Q Consensus      1013 ~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~ 1079 (1180)
                      .|++|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|.++-..|+ .++++
T Consensus       133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~  196 (264)
T KOG0617|consen  133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLD  196 (264)
T ss_pred             HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhh
Confidence            99999999 89999999999999999999998 8999999999999999999999977776 65554

>PLN03150 hypothetical protein; Provisional

Probab=99.57  E-value=4.3e-15  Score=179.26  Aligned_cols=118  Identities=36%  Similarity=0.618  Sum_probs=106.8

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCccccc-ccCCccccCCCCCCCCCCC-CCCC
Q 001036         1064 YNNLSGKIPEWTAQF-ATFNKSSYDGNPFLCGLPL-PICR 1101 (1180)
Q Consensus      1064 ~N~l~g~ip~~~~~~-~~~~~~~~~~N~~lc~~~l-~~c~ 1101 (1180)
                      +|+++|.+|..+... ......++.+|+++|+.|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999865442 3445677999999999764 3564

>PLN03150 hypothetical protein; Provisional

Probab=99.34  E-value=2.8e-12  Score=154.97  Aligned_cols=113  Identities=33%  Similarity=0.528  Sum_probs=101.1

Q ss_pred             CCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccce
Q 001036          908 LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG  987 (1180)
Q Consensus       908 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  987 (1180)
                      ++.|+|++|.++|.+|..+.+++                                                     .|+.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~~  446 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQS  446 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCCE
Confidence            67788999999988888776644                                                     7999


Q ss_pred             EEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCC-CCCCEEEcCCCc
Q 001036          988 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIFIVAYNN 1066 (1180)
Q Consensus       988 LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~l~ls~N~ 1066 (1180)
                      |+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ ..+..+++++|.
T Consensus       447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999998874 467889999997


Q ss_pred             CcccCCC
Q 001036         1067 LSGKIPE 1073 (1180)
Q Consensus      1067 l~g~ip~ 1073 (1180)
                      ..+.+|.
T Consensus       527 ~lc~~p~  533 (623)
T PLN03150        527 GLCGIPG  533 (623)
T ss_pred             cccCCCC
Confidence            6655554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.25  E-value=1.9e-13  Score=149.05  Aligned_cols=173  Identities=33%  Similarity=0.493  Sum_probs=137.5

Q ss_pred             ccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECc
Q 001036          835 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS  914 (1180)
Q Consensus       835 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  914 (1180)
                      ....+++.|++. ++|. .+..+-.|+.+.|..|.+. .+|..+.++..|.+|+|+.|+++ ..|..++.|+ |+.|-++
T Consensus        77 t~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             hhhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            345677777775 5666 6667777777778777776 67777888888888888888877 6677777665 7778888


Q ss_pred             CCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCc
Q 001036          915 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK  994 (1180)
Q Consensus       915 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  994 (1180)
                      +|+++. +|..++.                                                     +..|..||.|.|+
T Consensus       152 NNkl~~-lp~~ig~-----------------------------------------------------~~tl~~ld~s~ne  177 (722)
T KOG0532|consen  152 NNKLTS-LPEEIGL-----------------------------------------------------LPTLAHLDVSKNE  177 (722)
T ss_pred             cCcccc-CCccccc-----------------------------------------------------chhHHHhhhhhhh
Confidence            888763 3444331                                                     3367889999999


Q ss_pred             ccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCccc
Q 001036          995 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 1070 (1180)
Q Consensus       995 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ 1070 (1180)
                      +. .+|..++++.+|+.|++..|++. ..|+.+..| .|..||+|+|+++ .||-.|.+|..|++|-|.+|.|..+
T Consensus       178 i~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  178 IQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            98 78999999999999999999999 677777755 5889999999999 8999999999999999999999854

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.20  E-value=4.8e-12  Score=130.83  Aligned_cols=262  Identities=22%  Similarity=0.229  Sum_probs=144.1

Q ss_pred             cCCCCCCEEEccCcccCCCchhcccccccCCCCCcEEecCCCc---CCCCccccc-------cCCCCCcEEEccCccccC
Q 001036           80 TPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNA---FNNNVLSSL-------ARLSSLRSLYLSDNRLEG  149 (1180)
Q Consensus        80 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~---i~~~lp~~l-------~~l~~L~~L~L~~~~~~~  149 (1180)
                      -.+..++.++||+|.+...........+.+.+.||..+++.-.   ...++|+.+       ..+++|++||||+|.+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            4456677777777776544443444556667777777777642   223445443       346788888888887754


Q ss_pred             ccCh---hhccCCCCCCeEEccCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCcCCCccccc
Q 001036          150 SIDV---KELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQ  226 (1180)
Q Consensus       150 ~~~~---~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~  226 (1180)
                      ..+.   ..+.++..|++|.|.+|.+...........|..+.          ......+-+.|+++...+|++.+.....
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~----------~~kk~~~~~~Lrv~i~~rNrlen~ga~~  176 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA----------VNKKAASKPKLRVFICGRNRLENGGATA  176 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH----------HHhccCCCcceEEEEeeccccccccHHH
Confidence            3222   24567888888888888876554332222222222          0123445567777777777776665555


Q ss_pred             ccccccCCCCccEEEcCCCcCCch----hhHHhhccCCCceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhh
Q 001036          227 GLERLSRLSKLKKLDLRGNLCNNS----ILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVS  302 (1180)
Q Consensus       227 ~l~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~  302 (1180)
                      ..+.++.++.|+.+.++.|.+...    ....+..+++|+.|+|.+|.++....                      ..+.
T Consensus       177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs----------------------~~La  234 (382)
T KOG1909|consen  177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS----------------------VALA  234 (382)
T ss_pred             HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH----------------------HHHH
Confidence            555566667777777777765432    23344445555555555554432211                      1122


Q ss_pred             ccccCCCCccEEEcCCCccCcch--hhhhhc-CCCCCCceecccCCccccccc--chhhhcCCCCccEEEcCCCCC
Q 001036          303 RGYRGLRKLKSLDLSGVGIRDGN--KLLQSM-GSFPSLNTLHLESNNFTATLT--TTQELHNFTNLEYLTLDDSSL  373 (1180)
Q Consensus       303 ~~l~~l~~L~~L~L~~~~~~~~~--~~~~~l-~~l~~L~~L~L~~~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~  373 (1180)
                      ..+...++|+.|+++.|.+.+..  .+...+ ...|+|+.|.+.+|.+.....  ........+.|+.|++++|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            33444444444444444443311  112222 235666666666665543221  112234467777777777777

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=9.2e-11  Score=136.34  Aligned_cols=198  Identities=35%  Similarity=0.525  Sum_probs=113.4

Q ss_pred             eEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCC-CCCcEEECcCc
Q 001036          790 HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-SSLVTLDLSYN  868 (1180)
Q Consensus       790 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n  868 (1180)
                      .++...|.+... ...+..++.++.|++.+|.++. +|.                        ..... ++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~------------------------~~~~~~~nL~~L~l~~N  150 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPP------------------------LIGLLKSNLKELDLSDN  150 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCccccc-Ccc------------------------ccccchhhccccccccc
Confidence            466666665322 2233344666777777777662 222                        22223 25666666666


Q ss_pred             cCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccc
Q 001036          869 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTS  948 (1180)
Q Consensus       869 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  948 (1180)
                      ++. .+|..++.+++|+.|++++|++. .+|...+.+++|+.|++++|+++...+. ..                     
T Consensus       151 ~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~---------------------  206 (394)
T COG4886         151 KIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPE-IE---------------------  206 (394)
T ss_pred             chh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchh-hh---------------------
Confidence            665 44455666666666666666665 4455444566666666666666533221 00                     


Q ss_pred             cccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcccccccccccccc
Q 001036          949 FSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 1028 (1180)
Q Consensus       949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~ 1028 (1180)
                                                      .+..|.++++++|.+. .++..++++..+..|.+++|++. ..|..++
T Consensus       207 --------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~  252 (394)
T COG4886         207 --------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG  252 (394)
T ss_pred             --------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc
Confidence                                            0123556666666433 45556666666666666666666 3356666


Q ss_pred             CCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036         1029 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus      1029 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      .+.+++.|++++|+++ .++. ++.+..++.|++++|.++..+|.
T Consensus       253 ~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         253 NLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence            6666777777777666 3333 66666677777777766655554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=2e-10  Score=133.44  Aligned_cols=65  Identities=37%  Similarity=0.527  Sum_probs=27.5

Q ss_pred             ccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCccc
Q 001036          854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL  921 (1180)
Q Consensus       854 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  921 (1180)
                      +.++.++..+.+.+|++. ..+..++.+++++.|++++|.++. ++. +..+.+++.||+++|.++..
T Consensus       228 ~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             hhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCcccccc
Confidence            334444444444444443 123444444444444444444442 221 44444444444444444433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.04  E-value=1e-11  Score=135.87  Aligned_cols=175  Identities=30%  Similarity=0.454  Sum_probs=148.4

Q ss_pred             CCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCC
Q 001036          638 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE  717 (1180)
Q Consensus       638 ~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~  717 (1180)
                      .++.....|++.|++. .+|..+.. +..|+.+.++.|.+. .+|.++.++..|++++++.|+++ .+|..++  .--|+
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLk  146 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLK  146 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcce
Confidence            4556677889999998 88888876 778888999999888 68888999999999999999998 8888874  45689


Q ss_pred             EEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCc
Q 001036          718 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH  797 (1180)
Q Consensus       718 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  797 (1180)
                      .|.+++|+++ .+|+.++..+.|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+.. -.|..||++.|+
T Consensus       147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNk  222 (722)
T KOG0532|consen  147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNK  222 (722)
T ss_pred             eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCc
Confidence            9999999987 56777888889999999999987 56778888999999999999987 67777774 458889999999


Q ss_pred             CCCCCCccccCCCCCCEEEccCCccc
Q 001036          798 LEGPIPVEFCRLDSLQILDISDNNIS  823 (1180)
Q Consensus       798 l~~~~~~~~~~l~~L~~L~l~~n~l~  823 (1180)
                      +. .+|..|.+|+.|++|.|.+|.+.
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccCCCC
Confidence            87 78999999999999999999987

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.03  E-value=7.3e-11  Score=122.26  Aligned_cols=223  Identities=26%  Similarity=0.275  Sum_probs=149.3

Q ss_pred             CceEEEEeccccCCccc-ccccccccCCCCCCEEEccCcccCCCchhc-------ccccccCCCCCcEEecCCCcCCCCc
Q 001036           56 GRVIGLYLSETYSGEYW-YLNASLFTPFQQLESLDLSWNNIAGCAENE-------GLEGLSRLNNLKMLDLSGNAFNNNV  127 (1180)
Q Consensus        56 ~~v~~L~L~~~~~~~~~-~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~-------~~~~l~~l~~L~~L~Ls~~~i~~~l  127 (1180)
                      ..+++++|++++++..- ..-+..+.+-+.||..++|+. ++|.+..+       ..+.+-.+++|++||||.|.+....
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            35899999999765331 123456677889999999975 33433322       2344567789999999999987655


Q ss_pred             ccc----ccCCCCCcEEEccCccccCccC------------hhhccCCCCCCeEEccCCCCCchhhhcccCCcceecccC
Q 001036          128 LSS----LARLSSLRSLYLSDNRLEGSID------------VKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSG  191 (1180)
Q Consensus       128 p~~----l~~l~~L~~L~L~~~~~~~~~~------------~~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~  191 (1180)
                      +..    +.+++.|++|.|.+|.+.....            .+.+++-++||++..++|.+...+..             
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~-------------  175 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT-------------  175 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH-------------
Confidence            554    4568999999999998752211            11234455788888887776554322             


Q ss_pred             CCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCch----hhHHhhccCCCceeecC
Q 001036          192 TGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS----ILSSVARLSSLTSLHLS  267 (1180)
Q Consensus       192 ~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~  267 (1180)
                            .....+...+.|+.+.++.|.+.........+++..+++|+.|+|+.|-++..    ....++.+++|++|++.
T Consensus       176 ------~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  176 ------ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ------HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence                  12234666788888998888877655555567788999999999999987754    44455556778888888


Q ss_pred             CccccCccchh---hh-cccCCCcEEeCCCCcccc
Q 001036          268 HNILQGSIDAK---EF-DSLSNLEELDINDNEIDN  298 (1180)
Q Consensus       268 ~~~~~~~~~~~---~l-~~l~~L~~L~L~~n~~~~  298 (1180)
                      +|.+...-...   .+ ...|+|+.|.+.+|.++.
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence            88775432211   11 234566666666666544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.02  E-value=8.7e-11  Score=124.28  Aligned_cols=291  Identities=22%  Similarity=0.208  Sum_probs=167.5

Q ss_pred             CccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCc-CCchhhHHhhc-cCCCceeecCCccccCccchh-hhcccC
Q 001036          208 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNL-CNNSILSSVAR-LSSLTSLHLSHNILQGSIDAK-EFDSLS  284 (1180)
Q Consensus       208 ~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~-~l~~l~  284 (1180)
                      -|++|.++++.-.+...-  -.....++++++|.+.++. +++.....+++ +.+|+++++..|...+..... .-..++
T Consensus       139 ~lk~LSlrG~r~v~~ssl--rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSL--RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             ccccccccccccCCcchh--hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            455666666543332211  1124456667777666663 44444444444 577777777776544443333 335677


Q ss_pred             CCcEEeCCCCc-cccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCceecccCCcccccccchhhhcCCCCc
Q 001036          285 NLEELDINDNE-IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL  363 (1180)
Q Consensus       285 ~L~~L~L~~n~-~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L  363 (1180)
                      +|+++++++|. ++.-.+..-.+++..++.+.+.||.-...+.+...-+.++-+.++++..|...++......-..+..|
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            88888887774 33334444566777777777777766666666666677778888888888766665544445567888


Q ss_pred             cEEEcCCCC-CchhhHhhHhhhCCCCCEEEcCCCcccccccCCCC-CccccceeeccchhhhccccchhhhhcccCCcce
Q 001036          364 EYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF-PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLK  441 (1180)
Q Consensus       364 ~~L~L~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  441 (1180)
                      ++|..++|. +.......++...++|+.+.++.|+..+......+ .+++.|+.+++..|....+.. +......+|.++
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-L~sls~~C~~lr  375 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-LASLSRNCPRLR  375 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh-HhhhccCCchhc
Confidence            888888876 44444566666678888888888874333222222 356677777777666554432 222334566666


Q ss_pred             eeeccCcccCCC-CccccccccCCCCCCcEEEccCCCc-ccccchhhcCCCCccEEEccccc
Q 001036          442 YLSLSGSTLGTN-SSRILDQGLCPLAHLQELYIDNNDL-RGSLPWCLANTTSLRILDVSFNQ  501 (1180)
Q Consensus       442 ~L~L~~~~~~~~-~~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~  501 (1180)
                      .+.++.|....+ +...+...-+....|+.+.+++++. +...-..+..+++|+.+++..++
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            666665543222 1222222334455566666666642 23333344555555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=2.1e-10  Score=122.03  Aligned_cols=115  Identities=24%  Similarity=0.349  Sum_probs=83.9

Q ss_pred             ccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCceecccCCcccccccchhhhcCCC
Q 001036          282 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFT  361 (1180)
Q Consensus       282 ~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~  361 (1180)
                      ++.+|+...|.++.+......+..+.|++++.|+|+.|-+..+..+...+..+|+|+.|.|+.|.+....... .-..++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-TTLLLS  197 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-chhhhh
Confidence            3455556666665554444334566778888888888877777777888888999999999988876544322 223678


Q ss_pred             CccEEEcCCCCCchhhHhhHhhhCCCCCEEEcCCCc
Q 001036          362 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE  397 (1180)
Q Consensus       362 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  397 (1180)
                      +|+.|.++.|.+.......+...+|+|+.|++..|.
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence            899999999998866666666668999999998885

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=3.6e-10  Score=120.33  Aligned_cols=140  Identities=27%  Similarity=0.319  Sum_probs=68.9

Q ss_pred             CCCccEEEcCCCcCCchhhH-HhhccCCCceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhhccccCCCCcc
Q 001036          234 LSKLKKLDLRGNLCNNSILS-SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK  312 (1180)
Q Consensus       234 l~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~  312 (1180)
                      +++|+.|.++.|.++..... .+..+|+|+.|++..|... .+.......+..|++|+|++|.+.+.+.......++.|+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            34444444444444432222 2233455555555554311 111223334455556666665555554444555556666


Q ss_pred             EEEcCCCccCcchhh----hhhcCCCCCCceecccCCcccccccchhhhcCCCCccEEEcCCCCCch
Q 001036          313 SLDLSGVGIRDGNKL----LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI  375 (1180)
Q Consensus       313 ~L~L~~~~~~~~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~  375 (1180)
                      .|.++.+++.+....    ......+++|++|.+..|++... +....+..+++|+.|.+..+.+..
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w-~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW-RSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccccc-cccchhhccchhhhhhcccccccc
Confidence            666666555442211    11124566777777777665322 223345566677777766666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.88  E-value=2.8e-09  Score=131.33  Aligned_cols=106  Identities=27%  Similarity=0.278  Sum_probs=75.3

Q ss_pred             CceEEEEeccccCCcccccccccccCCCCCCEEEccCcc--cCCCchhcccccccCCCCCcEEecCCCcCCCCccccccC
Q 001036           56 GRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNN--IAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR  133 (1180)
Q Consensus        56 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~--~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~lp~~l~~  133 (1180)
                      ..+++..+.++.....    +. -..++.|++|-+.++.  +...+.    +.|..+++|++|||++|.-.+.+|.+|+.
T Consensus       523 ~~~rr~s~~~~~~~~~----~~-~~~~~~L~tLll~~n~~~l~~is~----~ff~~m~~LrVLDLs~~~~l~~LP~~I~~  593 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHI----AG-SSENPKLRTLLLQRNSDWLLEISG----EFFRSLPLLRVLDLSGNSSLSKLPSSIGE  593 (889)
T ss_pred             hheeEEEEeccchhhc----cC-CCCCCccceEEEeecchhhhhcCH----HHHhhCcceEEEECCCCCccCcCChHHhh
Confidence            3566666665533211    00 1234468888888875  333332    44778899999999988766679999999


Q ss_pred             CCCCcEEEccCccccCccChhhccCCCCCCeEEccCCCC
Q 001036          134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKI  172 (1180)
Q Consensus       134 l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L~~~~l  172 (1180)
                      |.+||+|+++++.+. .+|. .+++|++|.+|++..+.-
T Consensus       594 Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~  630 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGR  630 (889)
T ss_pred             hhhhhcccccCCCcc-ccch-HHHHHHhhheeccccccc
Confidence            999999999999887 3454 899999999999987754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.81  E-value=3.1e-09  Score=104.25  Aligned_cols=129  Identities=33%  Similarity=0.422  Sum_probs=35.6

Q ss_pred             cCCCCCcEEecCCCcCCCCcccccc-CCCCCcEEEccCccccCccChhhccCCCCCCeEEccCCCCCchhhhcccCCcce
Q 001036          108 SRLNNLKMLDLSGNAFNNNVLSSLA-RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKS  186 (1180)
Q Consensus       108 ~~l~~L~~L~Ls~~~i~~~lp~~l~-~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~  186 (1180)
                      .+..++|+|+|.+|.|..  .+.++ .+.+|++||+++|.+...   +.+..+++|++|++++|.++.+...        
T Consensus        16 ~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~~--------   82 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISEG--------   82 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHH--------
T ss_pred             cccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccccc--------
Confidence            344456666666666654  23444 356666666666666532   2455666666666666666554211        


Q ss_pred             ecccCCCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCch---hhHHhhccCCCce
Q 001036          187 LGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS---ILSSVARLSSLTS  263 (1180)
Q Consensus       187 L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~---~~~~l~~l~~L~~  263 (1180)
                                     ....+++|++|++++|++.....   +..++.+++|+.|++.+|.+...   ....+..+|+|+.
T Consensus        83 ---------------l~~~lp~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~  144 (175)
T PF14580_consen   83 ---------------LDKNLPNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV  144 (175)
T ss_dssp             ---------------HHHH-TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred             ---------------hHHhCCcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence                           00123444444444444433211   22355555666666666555432   3345556677777


Q ss_pred             eecC
Q 001036          264 LHLS  267 (1180)
Q Consensus       264 L~L~  267 (1180)
                      ||-.
T Consensus       145 LD~~  148 (175)
T PF14580_consen  145 LDGQ  148 (175)
T ss_dssp             ETTE
T ss_pred             eCCE
Confidence            6654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.78  E-value=1.4e-09  Score=109.57  Aligned_cols=59  Identities=39%  Similarity=0.456  Sum_probs=36.2

Q ss_pred             CCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCc
Q 001036          858 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH  919 (1180)
Q Consensus       858 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  919 (1180)
                      .-|+.+|||+|.|+ .+.++..-.+.++.|+++.|.+...  +.+..+++|+.||||+|.++
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence            45666777777666 4555566666667777777766522  22555666666666666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.77  E-value=3.7e-09  Score=130.34  Aligned_cols=107  Identities=25%  Similarity=0.283  Sum_probs=84.9

Q ss_pred             ceEEEEeccccCCcccccccccccCCCCCCEEEccCcc-cCCCchhcccccccCCCCCcEEecCCCcCCCCccccccCCC
Q 001036           57 RVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNN-IAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLS  135 (1180)
Q Consensus        57 ~v~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~-~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~lp~~l~~l~  135 (1180)
                      .++.|-+.++.. ....++..+|..++.||+|||++|. +..+|     +.++.|-+||||+++++.+.. +|.++++|+
T Consensus       546 ~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-----~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk  618 (889)
T KOG4658|consen  546 KLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-----SSIGELVHLRYLDLSDTGISH-LPSGLGNLK  618 (889)
T ss_pred             ccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCC-----hHHhhhhhhhcccccCCCccc-cchHHHHHH
Confidence            566776666532 1223456679999999999999874 44444     679999999999999999985 999999999


Q ss_pred             CCcEEEccCccccCccChhhccCCCCCCeEEccCCC
Q 001036          136 SLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNK  171 (1180)
Q Consensus       136 ~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L~~~~  171 (1180)
                      .|++||+..+.....+ +..+..+++||+|.+....
T Consensus       619 ~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence            9999999999866554 4466679999999998765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.77  E-value=8.7e-09  Score=101.15  Aligned_cols=112  Identities=29%  Similarity=0.441  Sum_probs=31.0

Q ss_pred             ccCCCCccEEeCCCCcCCCccccccccccc-CCCCccEEEcCCCcCCchhhHHhhccCCCceeecCCccccCccchhhhc
Q 001036          203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLS-RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFD  281 (1180)
Q Consensus       203 l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~-~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~  281 (1180)
                      +.+...+++|+|++|.+....      .++ .+.+|+.|++++|.+...  +.+..++.|++|++++|.+.. +......
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~   85 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDK   85 (175)
T ss_dssp             ---------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHH
T ss_pred             ccccccccccccccccccccc------chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHH
Confidence            334445666666666665432      144 356666777777665543  234455666666666666652 2222223


Q ss_pred             ccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCc
Q 001036          282 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD  323 (1180)
Q Consensus       282 ~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  323 (1180)
                      .+++|++|++++|++.+......++.+++|++|++.+|++..
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            466666666666666665545555556666666666665543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.76  E-value=3.9e-09  Score=106.49  Aligned_cols=224  Identities=23%  Similarity=0.209  Sum_probs=103.4

Q ss_pred             CCCCcEEecCCCc--------CCCCccccccCCCCCcEEEccCccccCccChhhccCCCCCCeEEccCCCCCchhhhccc
Q 001036          110 LNNLKMLDLSGNA--------FNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGL  181 (1180)
Q Consensus       110 l~~L~~L~Ls~~~--------i~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L~~~~l~~~~~~~~~  181 (1180)
                      ++.|.+|..++..        +...+|-.+.-+++|+.+.++.|.-.....  ....-+.|+++.+....++..+...-.
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~--~~~~kptl~t~~v~~s~~~~~~~l~pe  258 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVD--IELLKPTLQTICVHNTTIQDVPSLLPE  258 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheec--eeecCchhheeeeecccccccccccch
Confidence            4556666666542        112234445556788888888876432211  112235677777776655443321111


Q ss_pred             CCcceecccCCCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCchhhHHhhccCCC
Q 001036          182 SKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL  261 (1180)
Q Consensus       182 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L  261 (1180)
                      ..+....-..-..........+.--+.|+++||++|.++....     ...-.++++.|++++|.+.....  ++.+++|
T Consensus       259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDE-----SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L  331 (490)
T KOG1259|consen  259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDE-----SVKLAPKLRRLILSQNRIRTVQN--LAELPQL  331 (490)
T ss_pred             hhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhh-----hhhhccceeEEeccccceeeehh--hhhcccc
Confidence            1111111000000011111223334456666777666654322     24445666666666665443322  4444555


Q ss_pred             ceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCceec
Q 001036          262 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH  341 (1180)
Q Consensus       262 ~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~  341 (1180)
                      +.|++++|.+.                         ...  .+-..+.+++.|.+++|.+.+    ...++.+-+|..|+
T Consensus       332 ~~LDLS~N~Ls-------------------------~~~--Gwh~KLGNIKtL~La~N~iE~----LSGL~KLYSLvnLD  380 (490)
T KOG1259|consen  332 QLLDLSGNLLA-------------------------ECV--GWHLKLGNIKTLKLAQNKIET----LSGLRKLYSLVNLD  380 (490)
T ss_pred             eEeecccchhH-------------------------hhh--hhHhhhcCEeeeehhhhhHhh----hhhhHhhhhheecc
Confidence            55555554443                         321  222334444555555544433    22334444555555


Q ss_pred             ccCCcccccccchhhhcCCCCccEEEcCCCCCc
Q 001036          342 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLH  374 (1180)
Q Consensus       342 L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~  374 (1180)
                      +++|++..... ...++++|.|+.+.+.+|++.
T Consensus       381 l~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  381 LSSNQIEELDE-VNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             ccccchhhHHH-hcccccccHHHHHhhcCCCcc
Confidence            55555432211 124555666666666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=5.8e-09  Score=83.94  Aligned_cols=60  Identities=50%  Similarity=0.630  Sum_probs=40.4

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1043 (1180)
                      +|+.|++++|+|+...+..|.++++|++|++++|+++...|..|.++++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            466677777777655555666677777777777777666666667777777777776654

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.71  E-value=2.9e-09  Score=112.97  Aligned_cols=310  Identities=17%  Similarity=0.127  Sum_probs=199.9

Q ss_pred             CcceecccCCCcccccccc-cccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCC-cCCchhhHHhhc-cC
Q 001036          183 KLKSLGLSGTGFKGTFDVR-EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN-LCNNSILSSVAR-LS  259 (1180)
Q Consensus       183 ~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~-~~~~~~~~~l~~-l~  259 (1180)
                      .|+.+.+.++.-.+..... ....++++++|++.+|....  .......-..+++|++|++..| .+++.....++. ++
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT--d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT--DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc--HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            3444444444333222222 34568888888888886222  1221222345788999998885 466666665544 89


Q ss_pred             CCceeecCCccccCccch-hhhcccCCCcEEeCCCCccccch-hhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCC
Q 001036          260 SLTSLHLSHNILQGSIDA-KEFDSLSNLEELDINDNEIDNVE-VSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSL  337 (1180)
Q Consensus       260 ~L~~L~L~~~~~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L  337 (1180)
                      +|+++++++|.....-.. ....+++.++.+.+.+|.-.+.. +...-..+..+.++++..|....+..+...-..+..|
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            999999999875433222 33456777888877776433332 2223345666777887788766666666667778899


Q ss_pred             ceecccCCcccccccchhhhcCCCCccEEEcCCCC-CchhhHhhHhhhCCCCCEEEcCCCcccccc-cCCCCCcccccee
Q 001036          338 NTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCEVNGVL-SGQGFPHFKSLEH  415 (1180)
Q Consensus       338 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~  415 (1180)
                      +.|+.++|...+..+...-..++++|+.+.++.|+ ++.-.+..++...+.|+.+++.+|...... -...-.+++.|+.
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV  376 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence            99999988877766655556778999999999988 444445666666788999999888743322 1123457899999


Q ss_pred             eccchhhhccccch--hhhhcccCCcceeeeccCcccCCCCccccccccCCCCCCcEEEccCCC-cccc-cchhhcCCCC
Q 001036          416 LDMRFARIALNTSF--LQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND-LRGS-LPWCLANTTS  491 (1180)
Q Consensus       416 L~l~~~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~  491 (1180)
                      +.++.|....+...  ..........++.+.+++++...+..   ...+..+++|+.+++..|. ++.. +...-..+++
T Consensus       377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~---Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~  453 (483)
T KOG4341|consen  377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT---LEHLSICRNLERIELIDCQDVTKEAISRFATHLPN  453 (483)
T ss_pred             CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH---HHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence            99998887766522  23333557788889999887754322   2245678899999999884 3322 2233345666


Q ss_pred             ccEEEc
Q 001036          492 LRILDV  497 (1180)
Q Consensus       492 L~~L~l  497 (1180)
                      ++...+
T Consensus       454 i~v~a~  459 (483)
T KOG4341|consen  454 IKVHAY  459 (483)
T ss_pred             ceehhh
Confidence            665433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.70  E-value=1e-08  Score=82.52  Aligned_cols=61  Identities=39%  Similarity=0.572  Sum_probs=57.5

Q ss_pred             CCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcC
Q 001036         1007 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 1067 (1180)
Q Consensus      1007 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l 1067 (1180)
                      ++|++|++++|+++...++.|.++++|+.||+++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999988788999999999999999999988889999999999999999985

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=1.3e-09  Score=109.93  Aligned_cols=109  Identities=29%  Similarity=0.281  Sum_probs=67.1

Q ss_pred             CccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCchhhHHhhccCCCceeecCCccccCccc-hhhhcccCCC
Q 001036          208 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSID-AKEFDSLSNL  286 (1180)
Q Consensus       208 ~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~l~~l~~L  286 (1180)
                      .|+++||+...++....   ...+.+|++|+.|.+.++++++.....+++-.+|+.|+++.|.-..+.. .-.+.+++.|
T Consensus       186 Rlq~lDLS~s~it~stl---~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTL---HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHH---HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            57777777766543322   2236778888888888888888877788888888888887765332222 2345667777


Q ss_pred             cEEeCCCCccccchhhccccC-CCCccEEEcCCC
Q 001036          287 EELDINDNEIDNVEVSRGYRG-LRKLKSLDLSGV  319 (1180)
Q Consensus       287 ~~L~L~~n~~~~~~~~~~l~~-l~~L~~L~L~~~  319 (1180)
                      ..|++++|......+...+.. -++|+.|+|+|+
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~  296 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY  296 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence            777777776544332222222 245556666655

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.64  E-value=4.9e-09  Score=121.67  Aligned_cols=226  Identities=29%  Similarity=0.307  Sum_probs=122.0

Q ss_pred             CCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccE
Q 001036          758 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQ  837 (1180)
Q Consensus       758 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~  837 (1180)
                      +..+++|+.|++.+|++. .+...+..+++|++|++++|.++...  .+..++.|+.|++++|.++.             
T Consensus        91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-------------  154 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-------------  154 (414)
T ss_pred             cccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh-------------
Confidence            344455555555555554 22222444555555555555554332  22334445555555555541             


Q ss_pred             EEcCCcccccccCcccccCCCCCcEEECcCccCccccc-hhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCC
Q 001036          838 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN  916 (1180)
Q Consensus       838 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  916 (1180)
                                 +.  .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+..  ...+..+..+..+++..|
T Consensus       155 -----------~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  155 -----------IS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDN  218 (414)
T ss_pred             -----------cc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccc
Confidence                       11  23446667777777777764433 2 4566677777777776652  223333444444466666


Q ss_pred             cCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhcc--ccceEEccCCc
Q 001036          917 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS--LLAGLDLSCNK  994 (1180)
Q Consensus       917 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~LdLs~N~  994 (1180)
                      .++-.-+...                                                       +.  .|+.+++++|.
T Consensus       219 ~i~~~~~l~~-------------------------------------------------------~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  219 KISKLEGLNE-------------------------------------------------------LVMLHLRELYLSGNR  243 (414)
T ss_pred             cceeccCccc-------------------------------------------------------chhHHHHHHhcccCc
Confidence            6553211000                                                       00  26677777777


Q ss_pred             ccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCccc---CCcc-ccCCCCCCEEEcCCCcCccc
Q 001036          995 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK---IPRQ-LVDLNTLAIFIVAYNNLSGK 1070 (1180)
Q Consensus       995 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~---ip~~-l~~l~~L~~l~ls~N~l~g~ 1070 (1180)
                      +. .++..+..+..+..|++++|++...-.  +.....+..+.++.|++...   .... ......+....+.+|.....
T Consensus       244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  244 IS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             cc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence            76 444566677777788888877774432  33445666677777776521   1111 45566777777777777665


Q ss_pred             CCC
Q 001036         1071 IPE 1073 (1180)
Q Consensus      1071 ip~ 1073 (1180)
                      .+.
T Consensus       321 ~~~  323 (414)
T KOG0531|consen  321 SSL  323 (414)
T ss_pred             ccc
Confidence            543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=5.9e-09  Score=105.39  Aligned_cols=87  Identities=22%  Similarity=0.229  Sum_probs=47.2

Q ss_pred             CccEEEcCCCcCCch-hhHHhhccCCCceeecCCccccCccchhhhcccCCCcEEeCCCC-ccccchhhccccCCCCccE
Q 001036          236 KLKKLDLRGNLCNNS-ILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN-EIDNVEVSRGYRGLRKLKS  313 (1180)
Q Consensus       236 ~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n-~~~~~~~~~~l~~l~~L~~  313 (1180)
                      .|+++|++...++.. ....++.+.+|+.|.+++..+...+ ...++...+|+.|+++.| .+++..+.-.+..|..|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I-~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI-VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH-HHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            466666666655543 3344555666666666666655333 244555556666666554 3344444444555555555


Q ss_pred             EEcCCCccCc
Q 001036          314 LDLSGVGIRD  323 (1180)
Q Consensus       314 L~L~~~~~~~  323 (1180)
                      |+|++|....
T Consensus       265 LNlsWc~l~~  274 (419)
T KOG2120|consen  265 LNLSWCFLFT  274 (419)
T ss_pred             cCchHhhccc
Confidence            5555554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.53  E-value=1.8e-08  Score=100.62  Aligned_cols=261  Identities=21%  Similarity=0.193  Sum_probs=154.3

Q ss_pred             CCCCCEEEccCcccCCCchhcccccccCCCCCcEEecCCCcC---CCCcc-------ccccCCCCCcEEEccCccccCcc
Q 001036           82 FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAF---NNNVL-------SSLARLSSLRSLYLSDNRLEGSI  151 (1180)
Q Consensus        82 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i---~~~lp-------~~l~~l~~L~~L~L~~~~~~~~~  151 (1180)
                      +..+..+|||+|.|...........+.+-++|+..+++.-..   .+.++       ..+.+|++|+..+||+|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            566777777777776655544455566667888888876432   22333       34567889999999998886554


Q ss_pred             Ch---hhccCCCCCCeEEccCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCcCCCccccccc
Q 001036          152 DV---KELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL  228 (1180)
Q Consensus       152 ~~---~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l  228 (1180)
                      ++   ..|++-+.|.||.+++|.+..+......+.|..|..          .....+.+.|++.....|++.........
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~----------nKKaa~kp~Le~vicgrNRlengs~~~~a  178 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY----------NKKAADKPKLEVVICGRNRLENGSKELSA  178 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHH----------HhhhccCCCceEEEeccchhccCcHHHHH
Confidence            43   346778889999999887765543332222222211          12345677888888888888776655544


Q ss_pred             ccccCCCCccEEEcCCCcCCchhhH-----HhhccCCCceeecCCccccCcc---chhhhcccCCCcEEeCCCCccccch
Q 001036          229 ERLSRLSKLKKLDLRGNLCNNSILS-----SVARLSSLTSLHLSHNILQGSI---DAKEFDSLSNLEELDINDNEIDNVE  300 (1180)
Q Consensus       229 ~~l~~l~~L~~L~L~~~~~~~~~~~-----~l~~l~~L~~L~L~~~~~~~~~---~~~~l~~l~~L~~L~L~~n~~~~~~  300 (1180)
                      ..+.....|+++.+..|.+......     .+..+.+|+.|++.+|.++..-   -...+..++.|+.|.+.+|-+...+
T Consensus       179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G  258 (388)
T COG5238         179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG  258 (388)
T ss_pred             HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence            4566667888888888876654322     2233466666666666554221   1233444555666666665554433


Q ss_pred             hhccccCCCCccEEEcCCCccCcchhhhhhc--CCCCCCceecccCCcccccccch-----hhhcCCCCccEEEcCCCCC
Q 001036          301 VSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM--GSFPSLNTLHLESNNFTATLTTT-----QELHNFTNLEYLTLDDSSL  373 (1180)
Q Consensus       301 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l--~~l~~L~~L~L~~~~~~~~~~~~-----~~~~~l~~L~~L~L~~~~~  373 (1180)
                      ...                       +...+  ...|+|..|...+|...+.....     ..-.++|-|..|.+.+|.+
T Consensus       259 ~~~-----------------------v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         259 VKS-----------------------VLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             HHH-----------------------HHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence            222                       22222  13566666666666554332211     1123567777777777776


Q ss_pred             ch
Q 001036          374 HI  375 (1180)
Q Consensus       374 ~~  375 (1180)
                      ..
T Consensus       316 ~E  317 (388)
T COG5238         316 KE  317 (388)
T ss_pred             hh
Confidence            53

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.43  E-value=2.9e-08  Score=115.34  Aligned_cols=130  Identities=32%  Similarity=0.396  Sum_probs=72.8

Q ss_pred             CCCCCCEEEccCcccCCCchhcccccccCCCCCcEEecCCCcCCCCccccccCCCCCcEEEccCccccCccChhhccCCC
Q 001036           81 PFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLR  160 (1180)
Q Consensus        81 ~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~L~  160 (1180)
                      .+..+..+++..+.+....     ..++.+++|++|++.+|.+.. +...+..+.+|++|++++|.|+..   ..+..++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~  140 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL---EGLSTLT  140 (414)
T ss_pred             HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc---cchhhcc
Confidence            3455555556666555411     235666677777777777665 222266667777777777776542   2455666


Q ss_pred             CCCeEEccCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCcCC
Q 001036          161 DLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEID  220 (1180)
Q Consensus       161 ~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~  220 (1180)
                      .|+.|++++|.+..+.....+..|+.+++++|.+....... ...+.+++.+++.+|.+.
T Consensus       141 ~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  141 LLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             chhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            67777777777666554444555555555555544322211 344555555555555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=1.8e-07  Score=94.78  Aligned_cols=211  Identities=18%  Similarity=0.266  Sum_probs=105.0

Q ss_pred             CCcEEecCCCcCCCCc-ccccc-CCCCCcEEEccCccccCccChh-hccCCCCCCeEEccCCCCCchhhhcccCCcceec
Q 001036          112 NLKMLDLSGNAFNNNV-LSSLA-RLSSLRSLYLSDNRLEGSIDVK-ELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLG  188 (1180)
Q Consensus       112 ~L~~L~Ls~~~i~~~l-p~~l~-~l~~L~~L~L~~~~~~~~~~~~-~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~  188 (1180)
                      .+..|.+.++.|.... ...|+ .+++++.+||.+|.++.-.... .+.+++.|+.|+++.|++...+...-        
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--------  117 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--------  117 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--------
Confidence            4445555555554321 22233 2566777777777665332221 23566777777777766654332210        


Q ss_pred             ccCCCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCch--hhHHhhc-cCCCceee
Q 001036          189 LSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS--ILSSVAR-LSSLTSLH  265 (1180)
Q Consensus       189 l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~--~~~~l~~-l~~L~~L~  265 (1180)
                                     ....+|++|.|.+..+.......   .+..++.++.|+++.|.....  ....... -+.+++|+
T Consensus       118 ---------------~p~~nl~~lVLNgT~L~w~~~~s---~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh  179 (418)
T KOG2982|consen  118 ---------------LPLKNLRVLVLNGTGLSWTQSTS---SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLH  179 (418)
T ss_pred             ---------------ccccceEEEEEcCCCCChhhhhh---hhhcchhhhhhhhccchhhhhccccccccccchhhhhhh
Confidence                           22334444444444433222111   134444555555554421110  0011111 12344444


Q ss_pred             cCCccccCccchh-hhcccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCceecccC
Q 001036          266 LSHNILQGSIDAK-EFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES  344 (1180)
Q Consensus       266 L~~~~~~~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~  344 (1180)
                      ...|......... .-.-+|++..+.+..|++.+....+....++.+--|.|+.+++.++.+ ...+..++.|..|.+.+
T Consensus       180 ~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~  258 (418)
T KOG2982|consen  180 QLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSE  258 (418)
T ss_pred             cCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH-HHHHcCCchhheeeccC
Confidence            4444322111111 112356777777777777776666677777777777777777665433 35566677777777776


Q ss_pred             Ccccc
Q 001036          345 NNFTA  349 (1180)
Q Consensus       345 ~~~~~  349 (1180)
                      +++..
T Consensus       259 ~Pl~d  263 (418)
T KOG2982|consen  259 NPLSD  263 (418)
T ss_pred             Ccccc
Confidence            66543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.24  E-value=3.2e-07  Score=91.82  Aligned_cols=185  Identities=21%  Similarity=0.175  Sum_probs=103.4

Q ss_pred             cccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCchhhHHhhc-cCCCceeecCCccccCccchhhh
Q 001036          202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR-LSSLTSLHLSHNILQGSIDAKEF  280 (1180)
Q Consensus       202 ~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~l  280 (1180)
                      .+.+|++|+.++||.|.+....++...+.+++.+.|++|.+++|.+.......+++ +..|             ......
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l-------------a~nKKa  153 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL-------------AYNKKA  153 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH-------------HHHhhh
Confidence            45566677777777766665555554455666666677777666544332222221 0000             001223


Q ss_pred             cccCCCcEEeCCCCccccchhh---ccccCCCCccEEEcCCCccCcch--h-hhhhcCCCCCCceecccCCcccccc--c
Q 001036          281 DSLSNLEELDINDNEIDNVEVS---RGYRGLRKLKSLDLSGVGIRDGN--K-LLQSMGSFPSLNTLHLESNNFTATL--T  352 (1180)
Q Consensus       281 ~~l~~L~~L~L~~n~~~~~~~~---~~l~~l~~L~~L~L~~~~~~~~~--~-~~~~l~~l~~L~~L~L~~~~~~~~~--~  352 (1180)
                      +.-|.|+......|++...+..   ..++...+|+.+.+..|+|....  . ....+..+.+|+.|+|.+|.++..-  .
T Consensus       154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~  233 (388)
T COG5238         154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY  233 (388)
T ss_pred             ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence            3456777777777776554422   24566678888888888877531  1 1223445777888888877665322  1


Q ss_pred             chhhhcCCCCccEEEcCCCCCchhhHhhHhh-----hCCCCCEEEcCCCccc
Q 001036          353 TTQELHNFTNLEYLTLDDSSLHISLLQSIGS-----IFPSLKNLSMSGCEVN  399 (1180)
Q Consensus       353 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~  399 (1180)
                      ....+...+.|++|.+.+|-+.......+..     ..|+|..|....+...
T Consensus       234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            2233445566777777777665443333221     2466666666666543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.11  E-value=1e-07  Score=85.27  Aligned_cols=58  Identities=24%  Similarity=0.428  Sum_probs=30.5

Q ss_pred             cceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCc
Q 001036          985 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044 (1180)
Q Consensus       985 L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1044 (1180)
                      ++.++|++|+|+ .+|.++..++.|+.||++.|.|. ..|..|..|.++-.||...|.+.
T Consensus        79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            444555555555 45555555555555555555555 44444444555555555555544

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.10  E-value=3.3e-06  Score=61.73  Aligned_cols=34  Identities=35%  Similarity=0.788  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHhhcCCC-CCCC-----CC--CCCcccceeEec
Q 001036           19 DHERFALLRLKHFFTD-PYDK-----GA--TDCCQWEGVECS   52 (1180)
Q Consensus        19 ~~~~~~ll~~k~~~~~-~~~~-----~~--~~~c~w~gv~c~   52 (1180)
                      +.|++||++||+++.+ |.+.     ..  ++||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            6899999999999994 5343     22  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=8.6e-07  Score=90.07  Aligned_cols=87  Identities=28%  Similarity=0.328  Sum_probs=41.2

Q ss_pred             CCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCchhhHHhhccCCCceeecCCccccCccchhhhcccCC
Q 001036          206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSN  285 (1180)
Q Consensus       206 l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~  285 (1180)
                      ++.++.+||.+|.+++....  ..-+.++|.|+.|+++.|.+.......=....+|+.|-|.+..+.-.-....+..+|.
T Consensus        70 ~~~v~elDL~~N~iSdWseI--~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEI--GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhhhcccchhccHHHH--HHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            45566666666666543221  1224556666666666665443221111334455555555544432222233444555


Q ss_pred             CcEEeCCCC
Q 001036          286 LEELDINDN  294 (1180)
Q Consensus       286 L~~L~L~~n  294 (1180)
                      +++|+++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.03  E-value=2e-07  Score=105.53  Aligned_cols=17  Identities=24%  Similarity=0.522  Sum_probs=7.6

Q ss_pred             CCCCCCccEEEccCCcc
Q 001036          636 IHSHKRLRFLDVSNNNF  652 (1180)
Q Consensus       636 ~~~~~~L~~L~l~~n~l  652 (1180)
                      +..+.+|+.|.+.++.+
T Consensus       105 ifpF~sLr~LElrg~~L  121 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDL  121 (1096)
T ss_pred             eccccceeeEEecCcch
Confidence            33444444444444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.98  E-value=1.7e-07  Score=106.14  Aligned_cols=90  Identities=26%  Similarity=0.311  Sum_probs=68.2

Q ss_pred             ccccCCCCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccC
Q 001036          459 DQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFN  538 (1180)
Q Consensus       459 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~  538 (1180)
                      ..++.-++.++.|+|++|+++...  .+..++.|++|||++|.+. .+|.....++. |+.|.+++|.++.   ...+.+
T Consensus       180 D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t---L~gie~  252 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT---LRGIEN  252 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh---hhhHHh
Confidence            335666788999999999987543  6888999999999999987 66555555665 9999999998762   233567


Q ss_pred             CCCCcEEecCCcccccc
Q 001036          539 HSKLKIFDAKNNEINGE  555 (1180)
Q Consensus       539 l~~L~~l~l~~n~l~~~  555 (1180)
                      +.+|+.||+++|-+.+.
T Consensus       253 LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             hhhhhccchhHhhhhcc
Confidence            78888888888876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.89  E-value=7.7e-06  Score=98.80  Aligned_cols=143  Identities=30%  Similarity=0.399  Sum_probs=90.6

Q ss_pred             CCCcEEecCCCc-CCCCccccccC-CCCCcEEEccCccccCccChhhccCCCCCCeEEccCCCCCchhhhcccCCcceec
Q 001036          111 NNLKMLDLSGNA-FNNNVLSSLAR-LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLG  188 (1180)
Q Consensus       111 ~~L~~L~Ls~~~-i~~~lp~~l~~-l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~  188 (1180)
                      .+||+||++|.. +...-|..++. ||+|++|.+++-.+...--.....++++|+.||++++.++.....+.+++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            578888888864 34445556665 7888888888876643322234567888888898888888776666667777776


Q ss_pred             ccCCCcccccccccccCCCCccEEeCCCCcCCCcc--cccccccccCCCCccEEEcCCCcCCchhhH
Q 001036          189 LSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLV--VPQGLERLSRLSKLKKLDLRGNLCNNSILS  253 (1180)
Q Consensus       189 l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~--~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~  253 (1180)
                      +.+-.+........+-++++|+.||+|........  ...-++.-..+|+|+.||.++..++....+
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence            66666665555556667777777777766543332  111122233456666666666655544333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.74  E-value=2.3e-05  Score=57.28  Aligned_cols=36  Identities=42%  Similarity=0.699  Sum_probs=17.6

Q ss_pred             CCCEEeCccccccccccccccCCCCCCEEECcCCcCc
Q 001036         1008 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044 (1180)
Q Consensus      1008 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1044 (1180)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555555 34444555555555555555554

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.73  E-value=1.6e-06  Score=77.81  Aligned_cols=132  Identities=24%  Similarity=0.316  Sum_probs=72.8

Q ss_pred             CcEEECcCCcCCCCCccccc---CCCCCCeEEccCCcCCCCCCcccc-CCCCCCEEEccCCcccccCCCCcCCCcccEEE
Q 001036          764 LKGLYLNNNNLSGKIPRWLG---NLKGLQHIVMPKNHLEGPIPVEFC-RLDSLQILDISDNNISGSLPSCFYPLSIKQVH  839 (1180)
Q Consensus       764 L~~L~l~~n~l~~~~p~~~~---~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~  839 (1180)
                      +..++|++|.+. .+++...   ....|+..++++|.+.. +|..|. ..+..+.|++++|.++                
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis----------------   90 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS----------------   90 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh----------------
Confidence            445556666553 3443332   23344445666665553 233332 3345555555555554                


Q ss_pred             cCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCc
Q 001036          840 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH  919 (1180)
Q Consensus       840 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  919 (1180)
                              .+|. .+..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..+..-+..-..++.++++.
T Consensus        91 --------dvPe-E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~  159 (177)
T KOG4579|consen   91 --------DVPE-ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLG  159 (177)
T ss_pred             --------hchH-HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCccc
Confidence                    3555 4666777777777777776 45666666777777777777765 44444333333334455666666


Q ss_pred             ccCCC
Q 001036          920 GLIPS  924 (1180)
Q Consensus       920 ~~~p~  924 (1180)
                      +.-+.
T Consensus       160 ~~~~~  164 (177)
T KOG4579|consen  160 DETKK  164 (177)
T ss_pred             ccCcc
Confidence            55443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.64  E-value=3.4e-05  Score=56.42  Aligned_cols=37  Identities=43%  Similarity=0.742  Sum_probs=32.6

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccc
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 1021 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g 1021 (1180)
                      +|++|++++|+|+ .+|++++++++|++|++++|+|+.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            6899999999999 678889999999999999999993

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.00017  Score=80.02  Aligned_cols=57  Identities=16%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             CCCCEEeCccccccccccccccCCCCCCEEECcCCc------CcccCCccccCCCCCCEEEcCCCcC
Q 001036         1007 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK------LSGKIPRQLVDLNTLAIFIVAYNNL 1067 (1180)
Q Consensus      1007 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~------l~g~ip~~l~~l~~L~~l~ls~N~l 1067 (1180)
                      .+|++|++++|... ..|..+.  .+|+.|++++|.      -.+.+|+.+ .+....++.++.+.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f  218 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVF  218 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHh
Confidence            46777777776655 3444333  467777776663      123455555 444444444444433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.55  E-value=8.8e-05  Score=89.82  Aligned_cols=136  Identities=19%  Similarity=0.298  Sum_probs=71.1

Q ss_pred             CCCceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCc
Q 001036          259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLN  338 (1180)
Q Consensus       259 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~  338 (1180)
                      |.|++|.+.+-.+...--.....++|+|..||++++.+++.   .+++.+++|+.|.+.+-.+.....+ ..+-.+++|+
T Consensus       148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrnLe~e~~~~l-~~LF~L~~L~  223 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRNLEFESYQDL-IDLFNLKKLR  223 (699)
T ss_pred             cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhccCCCCCchhhH-HHHhcccCCC
Confidence            44444444443332211123334455555555555555443   3445555555555555444432222 2333456666


Q ss_pred             eecccCCcccccccc----hhhhcCCCCccEEEcCCCCCchhhHhhHhhhCCCCCEEEcCCCcc
Q 001036          339 TLHLESNNFTATLTT----TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV  398 (1180)
Q Consensus       339 ~L~L~~~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  398 (1180)
                      .||++.-........    .+....+|.|+.||.++..+.....+.+...-|+|+.+.+-+|..
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~  287 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLA  287 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhc
Confidence            666655433222100    012234788888888888888877777766567777777665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.40  E-value=0.00065  Score=75.47  Aligned_cols=15  Identities=13%  Similarity=0.184  Sum_probs=7.8

Q ss_pred             CCcccEEEccCCccc
Q 001036          615 NTKLEFLYLVNDSLA  629 (1180)
Q Consensus       615 ~~~L~~L~l~~n~~~  629 (1180)
                      +.+++.|++++|.++
T Consensus        51 ~~~l~~L~Is~c~L~   65 (426)
T PRK15386         51 ARASGRLYIKDCDIE   65 (426)
T ss_pred             hcCCCEEEeCCCCCc
Confidence            455555555555444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.33  E-value=9.1e-05  Score=89.24  Aligned_cols=14  Identities=21%  Similarity=0.401  Sum_probs=7.6

Q ss_pred             CCCCCEEEccCCcc
Q 001036          514 LTSIEELRLSNNHF  527 (1180)
Q Consensus       514 l~~L~~L~L~~n~l  527 (1180)
                      +..++.+++.++..
T Consensus       426 ~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  426 CSNLKDLDLSGCRV  439 (482)
T ss_pred             hhccccCCccCccc
Confidence            44555566655543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.29  E-value=0.00044  Score=67.23  Aligned_cols=87  Identities=28%  Similarity=0.295  Sum_probs=55.8

Q ss_pred             hcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccc-cccccCCccC
Q 001036          662 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI-FSRIFSLRNL  740 (1180)
Q Consensus       662 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L  740 (1180)
                      ....+...+|+++|.+..  -..|..+..|.+|.+.+|+|+ .|...+...+++|+.|.|.+|++.... -..+..+|.|
T Consensus        39 ~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   39 ATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             ccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence            335567777888887762  235667778888888888887 666666666777888888887765321 1223445555


Q ss_pred             ceeeccCCccc
Q 001036          741 RWLLLEGNHFV  751 (1180)
Q Consensus       741 ~~L~L~~n~l~  751 (1180)
                      ++|.+-+|+.+
T Consensus       116 ~~Ltll~Npv~  126 (233)
T KOG1644|consen  116 EYLTLLGNPVE  126 (233)
T ss_pred             ceeeecCCchh
Confidence            55555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.26  E-value=0.0006  Score=64.93  Aligned_cols=95  Identities=22%  Similarity=0.282  Sum_probs=31.3

Q ss_pred             CCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCcee
Q 001036          664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL  743 (1180)
Q Consensus       664 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  743 (1180)
                      +++++.+.+..+ +......+|.++.+++.+.+.+ .+. .++...+..+++++.+++..+ +.......|.+. +|+.+
T Consensus        34 ~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i  108 (129)
T PF13306_consen   34 CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEI  108 (129)
T ss_dssp             -TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EE
T ss_pred             cccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc-ccEEchhhhcCC-CceEE
Confidence            334444444332 3333333444444444444433 222 344444444455555555443 333333444444 55555


Q ss_pred             eccCCcccccCCCcCCCCCCC
Q 001036          744 LLEGNHFVGEIPQSLSKCSSL  764 (1180)
Q Consensus       744 ~L~~n~l~~~~p~~~~~l~~L  764 (1180)
                      .+.. .+..+....|.++++|
T Consensus       109 ~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  109 NIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             E-TT-B-SS----GGG-----
T ss_pred             EECC-CccEECCccccccccC
Confidence            5544 3333444455555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.23  E-value=0.00072  Score=64.37  Aligned_cols=108  Identities=22%  Similarity=0.230  Sum_probs=46.9

Q ss_pred             ChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccC
Q 001036          657 PVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS  736 (1180)
Q Consensus       657 p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  736 (1180)
                      +...+..+++|+.+.+.. .+..+...+|.++++|+.+.+..+ +. .++...+.++.+++.+.+.. .+.......|..
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence            344444455666666653 455455566666666776666654 44 55666665665666666654 333333444445


Q ss_pred             CccCceeeccCCcccccCCCcCCCCCCCcEEECc
Q 001036          737 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN  770 (1180)
Q Consensus       737 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~  770 (1180)
                      +++|+.+++..+ +.......|.++ +|+.+.+.
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            555555555443 333333344444 55555444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.16  E-value=0.00018  Score=86.62  Aligned_cols=39  Identities=26%  Similarity=0.299  Sum_probs=16.7

Q ss_pred             cCCCcEEeCCCCc-cccchhhccccCCCCccEEEcCCCcc
Q 001036          283 LSNLEELDINDNE-IDNVEVSRGYRGLRKLKSLDLSGVGI  321 (1180)
Q Consensus       283 l~~L~~L~L~~n~-~~~~~~~~~l~~l~~L~~L~L~~~~~  321 (1180)
                      +++|++|.+..|. +++..+......+++|++|++++|..
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            3444444444343 34434444444444444444444433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.91  E-value=0.0013  Score=63.97  Aligned_cols=85  Identities=25%  Similarity=0.314  Sum_probs=57.3

Q ss_pred             CccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCchhhHHhhccCCCceeecCCccccCccchhhhcccCCCc
Q 001036          208 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE  287 (1180)
Q Consensus       208 ~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~  287 (1180)
                      +...+|++.|.+.....      |..++.|.+|.++.|+++...+.--.-+++|..|.+.+|.+.+....+.+..+|.|+
T Consensus        43 ~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhhccc------CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence            55677888887765432      777888888888888877766665556667777777776666544455556666666


Q ss_pred             EEeCCCCcccc
Q 001036          288 ELDINDNEIDN  298 (1180)
Q Consensus       288 ~L~L~~n~~~~  298 (1180)
                      +|.+-+|+++.
T Consensus       117 ~Ltll~Npv~~  127 (233)
T KOG1644|consen  117 YLTLLGNPVEH  127 (233)
T ss_pred             eeeecCCchhc
Confidence            66666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.00037  Score=70.81  Aligned_cols=102  Identities=25%  Similarity=0.287  Sum_probs=65.1

Q ss_pred             CCCceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCc
Q 001036          259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLN  338 (1180)
Q Consensus       259 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~  338 (1180)
                      .+.++|+..+|.+.   +......++.|+.|.|+-|.+++.   ..+..|++|++|+|..|.|.+...+ .-+.++|+|+
T Consensus        19 ~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr   91 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLR   91 (388)
T ss_pred             HHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccccHHHH-HHHhcCchhh
Confidence            34455555555554   224556677888888887777653   3567788888888888877776553 4567788888


Q ss_pred             eecccCCcccccccc---hhhhcCCCCccEEE
Q 001036          339 TLHLESNNFTATLTT---TQELHNFTNLEYLT  367 (1180)
Q Consensus       339 ~L~L~~~~~~~~~~~---~~~~~~l~~L~~L~  367 (1180)
                      .|+|..|+-.+..+.   ...+..+|+|++|+
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888888776654332   12344455555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.33  E-value=0.0024  Score=65.24  Aligned_cols=89  Identities=24%  Similarity=0.352  Sum_probs=63.7

Q ss_pred             cCCCCCCEEEccCcccCCCchhcccccccCCCCCcEEecCCC--cCCCCccccccCCCCCcEEEccCccccCccChhhcc
Q 001036           80 TPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGN--AFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELD  157 (1180)
Q Consensus        80 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~--~i~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~l~  157 (1180)
                      -.+..|+.|++.+..++..      ..+-.+++|++|.++.|  ++.+.++.....+++|++|++++|++...-....+.
T Consensus        40 d~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             ccccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence            3455666777776666544      34567888999999998  666666666677799999999999876433334567


Q ss_pred             CCCCCCeEEccCCCCCc
Q 001036          158 SLRDLEELDIGGNKIDK  174 (1180)
Q Consensus       158 ~L~~L~~L~L~~~~l~~  174 (1180)
                      ++.+|..|++..|....
T Consensus       114 ~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhcchhhhhcccCCccc
Confidence            77788888888876544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.24  E-value=0.0004  Score=70.55  Aligned_cols=84  Identities=18%  Similarity=0.191  Sum_probs=48.0

Q ss_pred             CCCcEEEccCccccCccChhhccCCCCCCeEEccCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeC
Q 001036          135 SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDM  214 (1180)
Q Consensus       135 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L  214 (1180)
                      .+-+.|+.-+|.+..   .....+++.|++|.|+-|+|+...+...|++|++++|..|.+.+......+.++++|+.|.|
T Consensus        19 ~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            344455555555442   22445666666666666666666666666666666666666554444455555666666665


Q ss_pred             CCCcCCC
Q 001036          215 SGNEIDN  221 (1180)
Q Consensus       215 s~~~l~~  221 (1180)
                      ..|...+
T Consensus        96 ~ENPCc~  102 (388)
T KOG2123|consen   96 DENPCCG  102 (388)
T ss_pred             ccCCccc
Confidence            5554433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.20  E-value=0.00012  Score=84.80  Aligned_cols=201  Identities=25%  Similarity=0.248  Sum_probs=110.8

Q ss_pred             CCEEEccCcccCCCchhcccccccCCCCCcEEecCCCcCCCCccccccC----C-CCCcEEEccCccccCccC---hhhc
Q 001036           85 LESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR----L-SSLRSLYLSDNRLEGSID---VKEL  156 (1180)
Q Consensus        85 L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~lp~~l~~----l-~~L~~L~L~~~~~~~~~~---~~~l  156 (1180)
                      ++.|+|.+|.+...........+....+|..|++++|.+.+.....+++    . ..|++|++..|.++....   .+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            7778888888777666666666777788888888888877543333332    2 456777777777654321   2345


Q ss_pred             cCCCCCCeEEccCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCCCC
Q 001036          157 DSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSK  236 (1180)
Q Consensus       157 ~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~  236 (1180)
                      .....++.++++.|.+...........++               ..+....++++|++++|.++..........+...+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~---------------~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~  233 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALE---------------SAASPLSSLETLKLSRCGVTSSSCALLDEVLASGES  233 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhh---------------hhhcccccHHHHhhhhcCcChHHHHHHHHHHhccch
Confidence            55677777777777764322111111110               022345566666666666554333333333445554


Q ss_pred             -ccEEEcCCCcCCchhhH----Hhhcc-CCCceeecCCccccCccc---hhhhcccCCCcEEeCCCCccccch
Q 001036          237 -LKKLDLRGNLCNNSILS----SVARL-SSLTSLHLSHNILQGSID---AKEFDSLSNLEELDINDNEIDNVE  300 (1180)
Q Consensus       237 -L~~L~L~~~~~~~~~~~----~l~~l-~~L~~L~L~~~~~~~~~~---~~~l~~l~~L~~L~L~~n~~~~~~  300 (1180)
                       +..+++..|.+.+....    .+..+ ..+++++++.|.+...-.   ...+..++.++++.++.|.+.+..
T Consensus       234 ~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~  306 (478)
T KOG4308|consen  234 LLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG  306 (478)
T ss_pred             hhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence             55566666665554322    22223 455666666666553222   122334456666666666655443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.85  E-value=0.004  Score=63.67  Aligned_cols=85  Identities=27%  Similarity=0.416  Sum_probs=37.5

Q ss_pred             CCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCC--cCCchhhHHhhccCCCceeecCCccccCccchhhhccc
Q 001036          206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN--LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL  283 (1180)
Q Consensus       206 l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~--~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l  283 (1180)
                      +..|+.|++.++.++...      .+-.+++|++|.++.|  ++..........+++|+++++++|++.-.-....+..+
T Consensus        42 ~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             ccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence            344555555555444322      1445566666666666  33333333333334444444444444321112233334


Q ss_pred             CCCcEEeCCCCcc
Q 001036          284 SNLEELDINDNEI  296 (1180)
Q Consensus       284 ~~L~~L~L~~n~~  296 (1180)
                      ++|..|++.+|..
T Consensus       116 ~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  116 ENLKSLDLFNCSV  128 (260)
T ss_pred             cchhhhhcccCCc
Confidence            4444444444433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.64  E-value=0.0047  Score=37.40  Aligned_cols=19  Identities=58%  Similarity=0.866  Sum_probs=8.2

Q ss_pred             CCEEeCcccccccccccccc
Q 001036         1009 IQTLNLSHNNLTGTIPLTFS 1028 (1180)
Q Consensus      1009 L~~L~Ls~N~l~g~~p~~~~ 1028 (1180)
                      |++||||+|+|+ .+|.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            344444444444 3444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.26  E-value=0.0069  Score=36.67  Aligned_cols=21  Identities=43%  Similarity=0.661  Sum_probs=15.4

Q ss_pred             CCCEEECcCCcCcccCCccccC
Q 001036         1032 HIESLDLSYNKLSGKIPRQLVD 1053 (1180)
Q Consensus      1032 ~L~~L~Ls~N~l~g~ip~~l~~ 1053 (1180)
                      +|+.|||++|+|+ .+|.+|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4678888888888 77776654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.51  E-value=0.0077  Score=70.04  Aligned_cols=69  Identities=26%  Similarity=0.271  Sum_probs=28.2

Q ss_pred             ccCCCCccEEeCCCCcCCCcccccccccccCC-CCccEEEcCCCcCCch----hhHHhhccCCCceeecCCccc
Q 001036          203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL-SKLKKLDLRGNLCNNS----ILSSVARLSSLTSLHLSHNIL  271 (1180)
Q Consensus       203 l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l-~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~  271 (1180)
                      +....+|+.|++++|.+.........+.+... ..+++|++..|.++..    ..+.+.....++.++++.|.+
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence            33444555555555554433222222223332 3444444444444332    222233334444444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.02  E-value=0.011  Score=58.95  Aligned_cols=82  Identities=23%  Similarity=0.223  Sum_probs=71.4

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      ..+.||++.|++. ..-.-|..++.|..||+|.|++. ..|..++.+..+..+++-.|.++ ..|.++...+.+.+++.-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            5778999999987 45566788888999999999998 88999999999999999999988 889999999999999998


Q ss_pred             CCcCc
Q 001036         1064 YNNLS 1068 (1180)
Q Consensus      1064 ~N~l~ 1068 (1180)
                      .|.+.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            88764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.65  E-value=0.21  Score=27.94  Aligned_cols=11  Identities=55%  Similarity=0.869  Sum_probs=3.5

Q ss_pred             CCEEECcCCcC
Q 001036         1033 IESLDLSYNKL 1043 (1180)
Q Consensus      1033 L~~L~Ls~N~l 1043 (1180)
                      |+.|+|++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.52  E-value=0.19  Score=28.12  Aligned_cols=13  Identities=54%  Similarity=0.802  Sum_probs=5.3

Q ss_pred             CCCEEeCcccccc
Q 001036         1008 RIQTLNLSHNNLT 1020 (1180)
Q Consensus      1008 ~L~~L~Ls~N~l~ 1020 (1180)
                      +|++|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555554

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.11  E-value=0.22  Score=49.20  Aligned_cols=84  Identities=30%  Similarity=0.254  Sum_probs=47.5

Q ss_pred             CcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCceecccCCcccccccchhhhcCCCCccE
Q 001036          286 LEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY  365 (1180)
Q Consensus       286 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~  365 (1180)
                      ++.++-+++.+...+ .+.+..++.++.|.+..|...++..+-..-+-.++|+.|+|++|+-.++... ..+..+++|+.
T Consensus       103 IeaVDAsds~I~~eG-le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~  180 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEG-LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRR  180 (221)
T ss_pred             EEEEecCCchHHHHH-HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhHH
Confidence            455566666554433 3455666666677777666555444433333456777777777765544322 24555666666


Q ss_pred             EEcCCC
Q 001036          366 LTLDDS  371 (1180)
Q Consensus       366 L~L~~~  371 (1180)
                      |.+.+-
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            666553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.47  E-value=0.28  Score=48.47  Aligned_cols=87  Identities=22%  Similarity=0.197  Sum_probs=44.1

Q ss_pred             CccEEEcCCCcCCchhhHHhhccCCCceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhhccccCCCCccEEE
Q 001036          236 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLD  315 (1180)
Q Consensus       236 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~  315 (1180)
                      .++.++-+++.+.......+..++.++.|.+.+|.-.+..-.+.+++                        ..++|+.|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~------------------------~~~~L~~L~  157 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG------------------------LAPSLQDLD  157 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc------------------------cccchheee
Confidence            45566666666655566666666666666665554332222222211                        234444444


Q ss_pred             cCCCccCcchhhhhhcCCCCCCceecccCCcc
Q 001036          316 LSGVGIRDGNKLLQSMGSFPSLNTLHLESNNF  347 (1180)
Q Consensus       316 L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~  347 (1180)
                      |++|.-.+. .-...+..+++|+.|++.+-+.
T Consensus       158 lsgC~rIT~-~GL~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  158 LSGCPRITD-GGLACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             ccCCCeech-hHHHHHHHhhhhHHHHhcCchh
Confidence            444432221 1234566677777777766543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.43  E-value=0.59  Score=29.55  Aligned_cols=13  Identities=38%  Similarity=0.721  Sum_probs=5.5

Q ss_pred             CCCEEeCcccccc
Q 001036         1008 RIQTLNLSHNNLT 1020 (1180)
Q Consensus      1008 ~L~~L~Ls~N~l~ 1020 (1180)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.43  E-value=0.59  Score=29.55  Aligned_cols=13  Identities=38%  Similarity=0.721  Sum_probs=5.5

Q ss_pred             CCCEEeCcccccc
Q 001036         1008 RIQTLNLSHNNLT 1020 (1180)
Q Consensus      1008 ~L~~L~Ls~N~l~ 1020 (1180)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.41  E-value=0.62  Score=29.46  Aligned_cols=23  Identities=48%  Similarity=0.726  Sum_probs=14.6

Q ss_pred             CCCCCEEECcCCcCcccCCCCcc
Q 001036          905 LNQLQLLDLSDNNLHGLIPSCFD  927 (1180)
Q Consensus       905 l~~L~~L~Ls~N~l~~~~p~~~~  927 (1180)
                      +++|++|+|++|+++...+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35677777777777766555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.41  E-value=0.62  Score=29.46  Aligned_cols=23  Identities=48%  Similarity=0.726  Sum_probs=14.6

Q ss_pred             CCCCCEEECcCCcCcccCCCCcc
Q 001036          905 LNQLQLLDLSDNNLHGLIPSCFD  927 (1180)
Q Consensus       905 l~~L~~L~Ls~N~l~~~~p~~~~  927 (1180)
                      +++|++|+|++|+++...+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35677777777777766555443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.85  E-value=0.05  Score=54.32  Aligned_cols=99  Identities=27%  Similarity=0.356  Sum_probs=76.9

Q ss_pred             ccCCcccCCCC-ccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCc
Q 001036          990 LSCNKLVGHIP-PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068 (1180)
Q Consensus       990 Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 1068 (1180)
                      +|--.++ +|| .++......+.||+|.|++. -.-..|+-++.|+.||+|.|++. ..|..+..+..+..+++.+|+++
T Consensus        25 ~s~s~~s-~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~  101 (326)
T KOG0473|consen   25 LSLSELS-EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS  101 (326)
T ss_pred             CCHHHhc-ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh
Confidence            3333444 344 45777888999999999998 45567888899999999999998 89999999999999999999888


Q ss_pred             ccCCCcccccccCCccccCCCCCC
Q 001036         1069 GKIPEWTAQFATFNKSSYDGNPFL 1092 (1180)
Q Consensus      1069 g~ip~~~~~~~~~~~~~~~~N~~l 1092 (1180)
                       ..|-...+..........+||+.
T Consensus       102 -~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  102 -QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             -hCCccccccCCcchhhhccCcch
Confidence             45544667666666666777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1180
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-51
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-27
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-51
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-27
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-11
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-04
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		8e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  202 bits (513), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 195/683 (28%), Positives = 304/683 (44%), Gaps = 82/683 (12%)
Query: 466  AHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 523
            A L  L +  N L G +     L + + L+ L+VS N L      S  + L S+E L LS
Sbjct: 97   ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 524  NNHFRIPVSLEPLFNHS--KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 581
             N       +  + +    +LK      N+I+G+++ S  +  +F    L +SSN  +  
Sbjct: 157  ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF----LDVSSN--NFS 210
Query: 582  TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 641
            T   FL     L+  ++S  K+ G+F +  +   T+L+ L + ++   GP  +P    K 
Sbjct: 211  TGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKS 267
Query: 642  LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG--------------- 686
            L++L ++ N F G IP  +     +L   ++S N   G++P  FG               
Sbjct: 268  LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 687  ----------NVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFS 736
                       +  L+ LDLS N+ +GE+P+ L                  G I   +  
Sbjct: 328  SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 737  --LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794
                 L+ L L+ N F G+IP +LS CS L  L+L+ N LSG IP  LG+L  L+ + + 
Sbjct: 388  NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 795  KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 854
             N LEG IP E   + +L+ L +  N+++G +PS                          
Sbjct: 448  LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------------- 484
Query: 855  FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXX 914
             NC++L  + LS N L G IP WI  L  L+ L L++N+  G +P               
Sbjct: 485  -NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 915  XXXXHGLIPSCFDNTTLHESYN----------NNSSPDKPFKTSFSISGPQGSVEKKILE 964
                +G IP+     +   + N           N    K    + ++   QG   +++  
Sbjct: 544  TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 603
Query: 965  IFEFTTKNI-AYAYQGRVLSL------LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 1017
            +      NI +  Y G           +  LD+S N L G+IP +IG++  +  LNL HN
Sbjct: 604  LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 663
Query: 1018 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077
            +++G+IP    +LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   Q
Sbjct: 664  DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQ 722
Query: 1078 FATFNKSSYDGNPFLCGLPLPIC 1100
            F TF  + +  NP LCG PLP C
Sbjct: 723  FETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 209/453 (46%), Gaps = 28/453 (6%)
Query: 666  SLVYFNISMNALDGSIPS--SFGNVIFLQFLDLSNNKL--TGEIPDHLAMCCVXXXXXXX 721
            SL   ++S N+L G + +  S G+   L+FL++S+N L   G++   L +  +       
Sbjct: 98   SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 157
Query: 722  XXXXXKGHIFSRIFS--LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 779
                   ++   + S     L+ L + GN   G++   +S+C +L+ L +++NN S  IP
Sbjct: 158  NSIS-GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 214
Query: 780  RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQV 838
             +LG+   LQH+ +  N L G           L++L+IS N   G +P    PL S++ +
Sbjct: 215  -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 271
Query: 839  HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 898
             L++N   G++ +     C +L  LDLS N+  G++P +    S L  L L+ NN  GE+
Sbjct: 272  SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 899  PIXXXXXXXXXXXXXXXXXX-HGLIPSCFDNT-----TLHESYNNNSSPDKPFKTSFSIS 952
            P+                    G +P    N      TL  S NN S P  P        
Sbjct: 332  PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL----CQ 387
Query: 953  GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 1012
             P+ ++++  L+   FT K           S L  L LS N L G IP  +G+L++++ L
Sbjct: 388  NPKNTLQELYLQNNGFTGKIPPTLSN---CSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 1013 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072
             L  N L G IP     ++ +E+L L +N L+G+IP  L +   L    ++ N L+G+IP
Sbjct: 445  KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 1073 EWTAQFATFNKSSYDGNPFLCGLPLPI--CRSL 1103
            +W  +           N F   +P  +  CRSL
Sbjct: 505  KWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 195/683 (28%), Positives = 304/683 (44%), Gaps = 82/683 (12%)
Query: 466  AHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 523
            A L  L +  N L G +     L + + L+ L+VS N L      S  + L S+E L LS
Sbjct: 100  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 524  NNHFRIPVSLEPLFNHS--KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 581
             N       +  + +    +LK      N+I+G+++ S  +  +F    L +SSN  +  
Sbjct: 160  ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF----LDVSSN--NFS 213
Query: 582  TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 641
            T   FL     L+  ++S  K+ G+F +  +   T+L+ L + ++   GP  +P    K 
Sbjct: 214  TGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKS 270
Query: 642  LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF----------- 690
            L++L ++ N F G IP  +     +L   ++S N   G++P  FG+              
Sbjct: 271  LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 691  --------------LQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFS 736
                          L+ LDLS N+ +GE+P+ L                  G I   +  
Sbjct: 331  SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 737  --LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794
                 L+ L L+ N F G+IP +LS CS L  L+L+ N LSG IP  LG+L  L+ + + 
Sbjct: 391  NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 795  KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 854
             N LEG IP E   + +L+ L +  N+++G +PS                          
Sbjct: 451  LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------------- 487
Query: 855  FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXX 914
             NC++L  + LS N L G IP WI  L  L+ L L++N+  G +P               
Sbjct: 488  -NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 915  XXXXHGLIPSCFDNTTLHESYN----------NNSSPDKPFKTSFSISGPQGSVEKKILE 964
                +G IP+     +   + N           N    K    + ++   QG   +++  
Sbjct: 547  TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 965  IFEFTTKNI-AYAYQGRVLSL------LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 1017
            +      NI +  Y G           +  LD+S N L G+IP +IG++  +  LNL HN
Sbjct: 607  LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 1018 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077
            +++G+IP    +LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   Q
Sbjct: 667  DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQ 725
Query: 1078 FATFNKSSYDGNPFLCGLPLPIC 1100
            F TF  + +  NP LCG PLP C
Sbjct: 726  FETFPPAKFLNNPGLCGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 209/453 (46%), Gaps = 28/453 (6%)
Query: 666  SLVYFNISMNALDGSIPS--SFGNVIFLQFLDLSNNKL--TGEIPDHLAMCCVXXXXXXX 721
            SL   ++S N+L G + +  S G+   L+FL++S+N L   G++   L +  +       
Sbjct: 101  SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 722  XXXXXKGHIFSRIFS--LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 779
                   ++   + S     L+ L + GN   G++   +S+C +L+ L +++NN S  IP
Sbjct: 161  NSIS-GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 217
Query: 780  RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQV 838
             +LG+   LQH+ +  N L G           L++L+IS N   G +P    PL S++ +
Sbjct: 218  -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 274
Query: 839  HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 898
             L++N   G++ +     C +L  LDLS N+  G++P +    S L  L L+ NN  GE+
Sbjct: 275  SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 899  PIXXXXXXXXXXXXXXXXXX-HGLIPSCFDNT-----TLHESYNNNSSPDKPFKTSFSIS 952
            P+                    G +P    N      TL  S NN S P  P        
Sbjct: 335  PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL----CQ 390
Query: 953  GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 1012
             P+ ++++  L+   FT K           S L  L LS N L G IP  +G+L++++ L
Sbjct: 391  NPKNTLQELYLQNNGFTGKIPPTLSN---CSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 1013 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072
             L  N L G IP     ++ +E+L L +N L+G+IP  L +   L    ++ N L+G+IP
Sbjct: 448  KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 1073 EWTAQFATFNKSSYDGNPFLCGLPLPI--CRSL 1103
            +W  +           N F   +P  +  CRSL
Sbjct: 508  KWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 101/243 (41%), Gaps = 49/243 (20%)
Query: 681 IPSSFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRN 739
           IPSS  N+ +L FL +   N L G IP  +A                          L  
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 740 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 799
           L +L +   +  G IP  LS+  +L  L  + N LSG +P  + +L  L  I    N + 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 800 GPIPVEFCRLDSL-QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ---------- 848
           G IP  +     L   + IS N ++G +P  F  L++  V LS+NML G           
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 849 ------LKEGTFFN------CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 896
                  K    F+        +L  LDL  N + G++P  +  L  L  LN++ NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 897 EVP 899
           E+P
Sbjct: 283 EIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 137/353 (38%), Gaps = 113/353 (32%)
Query: 769  LNNNNLSG-------KIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDN 820
            +NN +LSG        IP  L NL  L  + +   N+L GPIP    +L  L  L I+  
Sbjct: 52   VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 821  NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 880
            N+SG++P                    Q+K        +LVTLD SYN L+G++P  I  
Sbjct: 112  NVSGAIPDFL----------------SQIK--------TLVTLDFSYNALSGTLPPSISS 147
Query: 881  LSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHESYNNNSS 940
            L  L  +    N + G +P                                 +SY + S 
Sbjct: 148  LPNLVGITFDGNRISGAIP---------------------------------DSYGSFSK 174
Query: 941  PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL-----SLLAGLDLSCNKL 995
                  TS +IS  +  +  KI     F   N+A+    R +     S+L G D +  K+
Sbjct: 175  ----LFTSMTIS--RNRLTGKIPP--TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 996  VGHIPP--------QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
              H+          ++G    +  L+L +N + GT+P   + L+ + SL++S+N L G+I
Sbjct: 227  --HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 1048 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 1100
            P+                               F+ S+Y  N  LCG PLP C
Sbjct: 285  PQG-------------------------GNLQRFDVSAYANNKCLCGSPLPAC 312

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 733 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 792
            IFS  N++   + G   V  +  S  K S    L  +NN L+  +    G+L  L+ ++
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPS--KISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354
Query: 793 MPKNHLE--GPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQVHLSKNMLHGQ 848
           +  N L+    I     ++ SLQ LDIS N++S       C +  S+  +++S N+L   
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL--- 411
Query: 849 LKEGTFFNC--SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 899
               T F C    +  LDL  N +  SIP  +  L  L  LN+A N L+  VP
Sbjct: 412 --TDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VP 460

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 269 NILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD-GNKL 327
           N L G IDA  F  L+ LE+LD++DN    V     +RGL  L +L L   G+++ G  L
Sbjct: 65  NALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGL 123
Query: 328 LQSMGSFPSLNTLHLESNNFTATLTTT-QELHNFTNL 363
            + +    +L  L+L+ NN  A    T ++L N T+L
Sbjct: 124 FRGLA---ALQYLYLQDNNLQALPDNTFRDLGNLTHL 157

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1180
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-165
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-119
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-70
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-45
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-30
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-29
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-28
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-28
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-26
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-26
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-23
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-24
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-24
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-22
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-19
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-21
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-20
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-14
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  507 bits (1307), Expect = e-165
 Identities = 216/799 (27%), Positives = 342/799 (42%), Gaps = 111/799 (13%)

Query: 311  LKSLDLSGVGIR-DGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLD 369
            + S+DLS   +    + +  S+ S   L +L L +++   +++         +L  L L 
Sbjct: 52   VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS---GFKCSASLTSLDLS 108

Query: 370  DSSLH--ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNT 427
             +SL   ++ L S+GS    LK L++S   ++      G     SLE LD+    I+   
Sbjct: 109  RNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 428  SFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA 487
                ++ +    LK+L++SG+ +   S  +    +    +L+ L + +N+    +P+ L 
Sbjct: 168  VVGWVLSDGCGELKHLAISGNKI---SGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LG 220

Query: 488  NTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 547
            + ++L+ LD+S N+L+G  S + +   T ++ L +S+N F  P+   P      L+    
Sbjct: 221  DCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSL 276

Query: 548  KNNEINGEINESHSLTPKFQLKSLSLSSNY--GDSVTFPKFLYHQHELKEAELSHIKMIG 605
              N+  GEI +  S      L  L LS N+  G     P F      L+   LS     G
Sbjct: 277  AENKFTGEIPDFLSGACD-TLTGLDLSGNHFYG---AVPPFFGSCSLLESLALSSNNFSG 332

Query: 606  EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHS-HKRLRFLDVSNNNFQGHIPVEIGDI- 663
            E P   L     L+ L L  +  +G     + +    L  LD+S+NNF G I   +    
Sbjct: 333  ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392

Query: 664  LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723
              +L    +  N   G IP +  N   L  L LS N L+G IP  L      L  L L  
Sbjct: 393  KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWL 451

Query: 724  NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 783
            N L+G I   +  ++ L  L+L+ N   GEIP  LS C++L  + L+NN L+G+IP+W+G
Sbjct: 452  NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 784  NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 843
             L+ L  + +  N   G IP E     SL  LD++ N  +G++P+               
Sbjct: 512  RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM------------- 558

Query: 844  MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN--NLEGEVPIQ 901
                       F  S      ++ N++ G    +I         + A N    +G    Q
Sbjct: 559  -----------FKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603

Query: 902  LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 961
            L RL+     +++     G     FDN                                 
Sbjct: 604  LNRLSTRNPCNITSRVYGGHTSPTFDN--------------------------------- 630

Query: 962  ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 1021
                                   +  LD+S N L G+IP +IG++  +  LNL HN+++G
Sbjct: 631  --------------------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670

Query: 1022 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATF 1081
            +IP    +LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   QF TF
Sbjct: 671  SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 729

Query: 1082 NKSSYDGNPFLCGLPLPIC 1100
              + +  NP LCG PLP C
Sbjct: 730  PPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  386 bits (994), Expect = e-119
 Identities = 221/883 (25%), Positives = 340/883 (38%), Gaps = 190/883 (21%)

Query: 16  GCLDHERFALLRLKHFFTDPYD----KGATDCCQWEGVECSNTTGRVIGLYLSETY-SGE 70
             L  E   L+  K    D           + C ++GV C +   +V  + LS    +  
Sbjct: 8   QSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSSKPLNVG 65

Query: 71  YWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNV--L 128
           +  +++SL      LESL LS ++I G      + G     +L  LDLS N+ +  V  L
Sbjct: 66  FSAVSSSLL-SLTGLESLFLSNSHING-----SVSGFKCSASLTSLDLSRNSLSGPVTTL 119

Query: 129 SSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKI-----DKFMVSKGLSK 183
           +SL   S L+ L +S N L+    V     L  LE LD+  N I       +++S G  +
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 184 LKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLV--VPQGLERLSRLSKLKKLD 241
           LK L +SG    G     +     NLE LD+S N   N    +P     L   S L+ LD
Sbjct: 180 LKHLAISGNKISGDV---DVSRCVNLEFLDVSSN---NFSTGIPF----LGDCSALQHLD 229

Query: 242 LRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEV 301
           + GN  +     +++  + L  L++S N   G I       L +L+ L + +N+    E+
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKF-TGEI 285

Query: 302 SRGYRG-LRKLKSLDLSGVGIRDGNKLL----QSMGSFPSLNTLHLESNNFTATLTTTQE 356
                G    L  LDLS      GN          GS   L +L L SNNF+  L     
Sbjct: 286 PDFLSGACDTLTGLDLS------GNHFYGAVPPFFGSCSLLESLALSSNNFSGEL-PMDT 338

Query: 357 LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHL 416
           L     L+ L L  +          G +  SL NLS                   SL  L
Sbjct: 339 LLKMRGLKVLDLSFNEFS-------GELPESLTNLSA------------------SLLTL 373

Query: 417 DMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 476
           D+         S     G  +P+L     +                     LQELY+ NN
Sbjct: 374 DL---------SSNNFSGPILPNLCQNPKN--------------------TLQELYLQNN 404

Query: 477 DLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLE 534
              G +P  L+N + L  L +SFN L+G+I SS L  L+ + +L+L  N     IP    
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQE-- 461

Query: 535 PLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELK 594
            L     L+      N++ GEI     L+    L  +SLS+N                  
Sbjct: 462 -LMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNWISLSNN------------------ 500

Query: 595 EAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQG 654
                  ++ GE P W +     L  L L                        SNN+F G
Sbjct: 501 -------RLTGEIPKW-IGRLENLAILKL------------------------SNNSFSG 528

Query: 655 HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV 714
           +IP E+GD   SL++ +++ N  +G+IP++       Q   ++ N + G+   ++    +
Sbjct: 529 NIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGM 583

Query: 715 NLEF-LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 773
             E   + +    +G    ++  L       +    + G    +     S+  L ++ N 
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643

Query: 774 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 833
           LSG IP+ +G++  L  + +  N + G IP E   L  L ILD+S N + G +P      
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ----- 698

Query: 834 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 876
                                   + L  +DLS N L+G IP+
Sbjct: 699 -------------------AMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.1 bits (131), Expect = 2e-07
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 1005 NLTRIQTLNLSHNNLT---GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 1061
               ++ +++LS   L      +  +  +L  +ESL LS + ++G +        +L    
Sbjct: 48   RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 1062 VAYNNLSGKIPEW 1074
            ++ N+LSG +   
Sbjct: 107  LSRNSLSGPVTTL 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  291 bits (746), Expect = 2e-85
 Identities = 121/706 (17%), Positives = 225/706 (31%), Gaps = 94/706 (13%)

Query: 410  FKSLEHLDMRFARIA--LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 467
              ++  L++   ++      +F          L  L +  +T+    S++  +    L  
Sbjct: 24   PTNITVLNLTHNQLRRLPAANF-----TRYSQLTSLDVGFNTI----SKLEPELCQKLPM 74

Query: 468  LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 527
            L+ L + +N+L        A  T+L  L +  N +   I ++P V   ++  L LS+N  
Sbjct: 75   LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGL 133

Query: 528  RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 587
                 L        L+     NN+I    +E   +     LK L LSSN       P   
Sbjct: 134  SS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCF 191

Query: 588  YHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV 647
            +    L    L+++++       L                          ++  +R L +
Sbjct: 192  HAIGRLFGLFLNNVQLGPSLTEKLCLE----------------------LANTSIRNLSL 229

Query: 648  SNNNFQGHIPVEIGDI-LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP 706
            SN+            +   +L   ++S N L+     SF  +  L++  L  N +     
Sbjct: 230  SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 707  DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 766
              L     N+ +L+L  +                    +           S      L+ 
Sbjct: 290  HSLH-GLFNVRYLNLKRS---------------FTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 767  LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE----FCRLDSLQILDISDNNI 822
            L + +N++ G        L  L+++ +  +                   L IL+++ N I
Sbjct: 334  LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 823  SGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 881
            S      F  L  ++ + L  N +  +L    +    ++  + LSYN       +    +
Sbjct: 394  SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 882  SQLSHLNLAHNNLEG--EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESY 935
              L  L L    L+     P     L  L +LDLS+NN+  +     +       L   +
Sbjct: 454  PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 936  NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 995
            NN                         L             Y  + LS L  L+L  N  
Sbjct: 514  NN-------------------------LARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 996  VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD-L 1054
                     +L  ++ ++L  NNL       F+N   ++SL+L  N ++    +      
Sbjct: 549  DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 1055 NTLAIFIVAYNNLSGKIP--EWTAQFA--TFNKSSYDGNPFLCGLP 1096
              L    + +N          W   +   T        + +LC  P
Sbjct: 609  RNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  262 bits (671), Expect = 4e-75
 Identities = 134/736 (18%), Positives = 232/736 (31%), Gaps = 145/736 (19%)

Query: 204 DSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTS 263
           D   N+ VL+++ N++  L         +R S+L  LD+  N  +        +L  L  
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAAN----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV 77

Query: 264 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 323
           L+L HN L   +  K F   +NL EL +  N I  ++ +  +   + L +LDLS      
Sbjct: 78  LNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLS------ 129

Query: 324 GNKL----LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQ 379
            N L    L +     +L  L L +N   A  +   ++   ++L+ L L  + +      
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK----- 184

Query: 380 SIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPS 439
                 P                    F     L  L +   ++  + +    +  +  S
Sbjct: 185 ---EFSPGC------------------FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 440 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSF 499
           ++ LSLS S L T S+           +L  L +  N+L        A    L    + +
Sbjct: 224 IRNLSLSNSQLSTTSNTTF--LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 500 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINES 559
           N +    S S L  L ++  L L  +  +  +S                   +    + S
Sbjct: 282 NNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSIS----------------LASLPKIDDFS 324

Query: 560 HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 619
                   L+ L++  N                           I    + +      L+
Sbjct: 325 FQWLKC--LEHLNMEDN--------------------------DIPGIKSNMFTGLINLK 356

Query: 620 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG 679
           +L L              S+       ++N  F              L   N++ N +  
Sbjct: 357 YLSL--------------SNSFTSLRTLTNETFVSL-------AHSPLHILNLTKNKISK 395

Query: 680 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 739
               +F  +  L+ LDL  N++  E+         N+  + LS N       +    + +
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 740 LRWLLLEGNHF--VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 797
           L+ L+L       V   P       +L  L L+NNN++      L  L+ L+ + +  N+
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 798 LE--------GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL 849
           L         G        L  L IL++  N                            +
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE------------------------I 551

Query: 850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQL 908
               F +   L  +DL  N LN       +    L  LNL  N +              L
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611

Query: 909 QLLDLSDNNLHGLIPS 924
             LD+  N       S
Sbjct: 612 TELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  243 bits (623), Expect = 1e-68
 Identities = 127/687 (18%), Positives = 227/687 (33%), Gaps = 85/687 (12%)

Query: 84  QLESLDLSWNNIAGCAENEGLEGLSR--LNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
             E  D S            L  +      N+ +L+L+ N       ++  R S L SL 
Sbjct: 5   SHEVADCSHLK---------LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGTGFKGTFD 199
           +  N +   ++ +    L  L+ L++  N++ +         + L  L L     +    
Sbjct: 56  VGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IK 113

Query: 200 VREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILS--SVAR 257
              F    NL  LD+S N + +  +        +L  L++L L  N           +  
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGT----QVQLENLQELLLSNNKIQALKSEELDIFA 169

Query: 258 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG--LRKLKSLD 315
            SSL  L LS N ++       F ++  L  L +N+ ++      +         +++L 
Sbjct: 170 NSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 316 LSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI 375
           LS   +   +        + +L  L L  NN                LEY  L+ +++  
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV--VGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 376 SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG--------FPHFKSLEHLDMRFARIALNT 427
               S+  +  +++ L++        +S           F   K LEHL+M    I    
Sbjct: 287 LFSHSLHGL-FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI---P 342

Query: 428 SFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA 487
                +   + +LKYLSLS S     +           + L  L +  N +        +
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

Query: 488 NTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFNHSKLKIF 545
               L +LD+  N++   ++      L +I E+ LS N +      S   +     L+  
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV---PSLQRL 459

Query: 546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIG 605
             +   +    +      P   L  L LS+N                           I 
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNN--------------------------IA 493

Query: 606 EFPNWLLENNTKLEFLYL--------VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIP 657
              + +LE   KLE L L           +  G     +     L  L++ +N F     
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 658 VEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 717
               D L  L   ++ +N L+    S F N + L+ L+L  N +T            NL 
Sbjct: 554 EVFKD-LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612

Query: 718 FLSLSNNSLKGHIFSRIFSLRNLRWLL 744
            L +  N           +  ++ W +
Sbjct: 613 ELDMRFNPFDC-------TCESIAWFV 632

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  215 bits (550), Expect = 4e-59
 Identities = 119/670 (17%), Positives = 226/670 (33%), Gaps = 100/670 (14%)

Query: 72  WYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSL 131
             L   L      L+ L+L  N ++  ++       +   NL  L L  N+      +  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 132 ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF----MVSKGLSKLKSL 187
            +  +L +L LS N L  +        L +L+EL +  NKI       +     S LK L
Sbjct: 118 VKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 188 GLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLC 247
            LS    K  F    F +   L  L ++  ++    + + L      + ++ L L  +  
Sbjct: 177 ELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQL-GPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 248 NNSILSSVA--RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 305
           + +  ++    + ++LT L LS+N L   +    F  L  LE   +  N I ++  S   
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLF-SHSL 292

Query: 306 RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY 365
            GL  ++ L+L            +   S  SL  +   S                  LE+
Sbjct: 293 HGLFNVRYLNLK-------RSFTKQSISLASLPKIDDFS------------FQWLKCLEH 333

Query: 366 LTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL 425
           L ++D+ +                            +    F    +L++L +  +  +L
Sbjct: 334 LNMEDNDIP--------------------------GIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 426 NT-SFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP- 483
            T +    +  +   L  L+L+ + +    S+I       L HL+ L +  N++   L  
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKI----SKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 484 WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKL 542
                  ++  + +S+N+      +S    + S++ L L     + +  S  P      L
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNS-FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 543 KIFDAKNNEINGEINES-HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 601
            I D  NN I    ++    L    +L+ L L  N                     L+ +
Sbjct: 483 TILDLSNNNIANINDDMLEGLE---KLEILDLQHNN--------------------LARL 519

Query: 602 --KMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 659
                   P + L+  + L  L L ++               L+ +D+  NN        
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579

Query: 660 IGDILPSLVYFNISMNALDGSIPSSFGNVI-FLQFLDLSNNKLTGEIPDHLAMCCVNLEF 718
             +   SL   N+  N +       FG     L  LD+  N                + +
Sbjct: 580 FNN-QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF----VNW 634

Query: 719 LSLSNNSLKG 728
           ++ ++ ++  
Sbjct: 635 INETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  203 bits (519), Expect = 4e-55
 Identities = 80/427 (18%), Positives = 149/427 (34%), Gaps = 51/427 (11%)

Query: 666  SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 725
            S    + S   L   +P        +  L+L++N+L      +       L  L +  N+
Sbjct: 5    SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNT 60

Query: 726  LKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 785
            +          L  L+ L L+ N       ++ + C++L  L+L +N++           
Sbjct: 61   ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 786  KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL---SIKQVHLSK 842
            K L  + +  N L         +L++LQ L +S+N I              S+K++ LS 
Sbjct: 121  KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 843  NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI---DGLSQLSHLNLAHNNLEGEVP 899
            N +      G F     L  L L+   L  S+ + +      + + +L+L+++ L     
Sbjct: 181  NQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 900  --IQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISG 953
                  +   L +LDLS NNL+ +    F            YNN                
Sbjct: 240  TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN---------------- 283

Query: 954  PQGSVEKKILEIFEFTTKNIAYAYQGRVLSL---LAGLDLSCNKLVGHIPPQIGNLTRIQ 1010
                       I    + ++   +  R L+L        +S   L          L  ++
Sbjct: 284  -----------IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 1011 TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV----DLNTLAIFIVAYNN 1066
             LN+  N++ G     F+ L +++ L LS +  S +            + L I  +  N 
Sbjct: 333  HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 1067 LSGKIPE 1073
            +S    +
Sbjct: 393  ISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  137 bits (347), Expect = 2e-33
 Identities = 71/314 (22%), Positives = 123/314 (39%), Gaps = 18/314 (5%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA 132
            + +++FT    L+ L LS +  +              + L +L+L+ N  +     + +
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

Query: 133 RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLS 190
            L  L  L L  N +   +  +E   L ++ E+ +  NK  +   +    +  L+ L L 
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

Query: 191 GTGFKG-TFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN---- 245
               K        F    NL +LD+S N I N+      + L  L KL+ LDL+ N    
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND----DMLEGLEKLEILDLQHNNLAR 518

Query: 246 ----LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEV 301
                     +  +  LS L  L+L  N     I  + F  L  L+ +D+  N ++ +  
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 302 SRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFT 361
           S  +     LKSL+L    I    K +    +F +L  L +  N F  T  +     N+ 
Sbjct: 578 SV-FNNQVSLKSLNLQKNLITSVEKKVFG-PAFRNLTELDMRFNPFDCTCESIAWFVNWI 635

Query: 362 NLEYLTLDDSSLHI 375
           N  +  + + S H 
Sbjct: 636 NETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.7 bits (197), Expect = 3e-15
 Identities = 34/192 (17%), Positives = 54/192 (28%), Gaps = 56/192 (29%)

Query: 883  QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 942
                 + +H  L  +VP  L     + +L+L+ N L  L  + F                
Sbjct: 5    SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTR-------------- 47

Query: 943  KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 1002
                                                    S L  LD+  N +    P  
Sbjct: 48   ---------------------------------------YSQLTSLDVGFNTISKLEPEL 68

Query: 1003 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 1062
               L  ++ LNL HN L+     TF+   ++  L L  N +        V    L    +
Sbjct: 69   CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 1063 AYNNLSGKIPEW 1074
            ++N LS      
Sbjct: 129  SHNGLSSTKLGT 140

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 2e-09
 Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 4/112 (3%)

Query: 62  YLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGN 121
            L+  +                 L  L+L  N                L  LK++DL  N
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV----FKDLFELKIIDLGLN 570

Query: 122 AFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKID 173
             N    S      SL+SL L  N +          + R+L ELD+  N  D
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  254 bits (651), Expect = 7e-73
 Identities = 80/611 (13%), Positives = 180/611 (29%), Gaps = 91/611 (14%)

Query: 486  LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP---LFNHSKL 542
            L +   +  L +     +G +  + +  LT +E L L ++  ++   L     +  +   
Sbjct: 77   LNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 543  KIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIK 602
            +              +         L    ++S+     +  K      +  +       
Sbjct: 136  EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ-QKSIKKSSRITLKDTQIGQLSNN 194

Query: 603  MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 662
             I      ++   TKL   Y+ N             ++                 ++  +
Sbjct: 195  -ITFVSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDN 247

Query: 663  ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM-------CCVN 715
             L  L    +        +P+    +  +Q ++++ N+                      
Sbjct: 248  -LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 716  LEFLSLSNNSLK-GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 774
            ++ + +  N+LK   + + +  ++ L  L    N   G++P +      L  L L  N +
Sbjct: 307  IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365

Query: 775  SGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 833
            +     + G  + ++++    N L+  P   +   +  +  +D S N I       F PL
Sbjct: 366  TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 834  --------SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG-------SIPDWI 878
                    ++  ++LS N +    KE  F   S L +++L  N L            +  
Sbjct: 426  DPTPFKGINVSSINLSNNQISKFPKE-LFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 879  DGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 937
                 L+ ++L  N L       +   L  L  +DLS N+         +++TL      
Sbjct: 485  KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL------ 538

Query: 938  NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 997
                                                      +   +    D   N+ + 
Sbjct: 539  ------------------------------------------KGFGIRNQRDAQGNRTLR 556

Query: 998  HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 1057
              P  I     +  L +  N++         N+     LD+  N         +      
Sbjct: 557  EWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLSYVCPYIEA 613

Query: 1058 AIFIVAYNNLS 1068
             ++++ Y+   
Sbjct: 614  GMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  226 bits (577), Expect = 6e-63
 Identities = 76/542 (14%), Positives = 171/542 (31%), Gaps = 75/542 (13%)

Query: 567  QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL---LENNTKLEFLYL 623
            ++  LSL    G S   P  +    EL+   L           +    +  N   E    
Sbjct: 82   RVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 624  VNDSLAGPF--RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI 681
            +       F    P      L    ++++  Q  I      I           N +   +
Sbjct: 141  MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNI-TFV 198

Query: 682  PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 741
              +   +  L+   + N+    E        C   E  +            +  +L++L 
Sbjct: 199  SKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 742  WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL--------SGKIPRWLGNLKGLQHIVM 793
             + +     + ++P  L     ++ + +  N            +        + +Q I +
Sbjct: 253  DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 794  PKNHL-EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEG 852
              N+L   P+     ++  L +L+   N + G LP+    + +  ++L+ N +   +   
Sbjct: 313  GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPAN 371

Query: 853  TFFNCSSLVTLDLSYNYLNGSIPDW--IDGLSQLSHLNLAHNNLEG-------EVPIQLC 903
                   +  L  ++N L   IP+      +S +S ++ ++N +          +     
Sbjct: 372  FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 904  RLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVE 959
            +   +  ++LS+N +       F      ++++   N              ++    +  
Sbjct: 431  KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-------------LTEIPKNSL 477

Query: 960  KKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI--GNLTRIQTLNLSHN 1017
            K   E F             +   LL  +DL  NKL   +        L  +  ++LS+N
Sbjct: 478  KDENENF-------------KNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523

Query: 1018 NLTGTIPLTFSNLRHIESL------DLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 1071
            + +   P    N   ++        D   N+   + P  +    +L    +  N++   +
Sbjct: 524  SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-V 581

Query: 1072 PE 1073
             E
Sbjct: 582  NE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  219 bits (560), Expect = 1e-60
 Identities = 61/470 (12%), Positives = 151/470 (32%), Gaps = 72/470 (15%)

Query: 636  IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFL 691
            ++S+ R+  L +      G +P  IG  L  L    +  +          P      +  
Sbjct: 77   LNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 692  QFLDLSNNKLTGEIPDHLAMC-CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 750
            +              D+       +L    ++++  +  I            +    N+ 
Sbjct: 136  EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 751  VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 810
               + +++ + + L+  Y+ N+    +        +  ++             +++  L 
Sbjct: 196  -TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLK 249

Query: 811  SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKE-------GTFFNCSSLVT 862
             L  +++ +      LP+    L  ++ ++++ N      +                +  
Sbjct: 250  DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 863  LDLSYNYL-NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 921
            + + YN L    +   +  + +L  L   +N LEG++P       +L  L+L+ N +  +
Sbjct: 310  IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI 368

Query: 922  IPSCFDNTT----LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977
              +    T     L  ++N                         I  IF+  +       
Sbjct: 369  PANFCGFTEQVENLSFAHNKLKY---------------------IPNIFDAKS------- 400

Query: 978  QGRVLSLLAGLDLSCNKLVG-------HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 1030
                +S+++ +D S N++          + P       + ++NLS+N ++      FS  
Sbjct: 401  ----VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 1031 RHIESLDLSYNKLSG-------KIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073
              + S++L  N L+               +   L    + +N L+    +
Sbjct: 457  SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  219 bits (559), Expect = 1e-60
 Identities = 82/545 (15%), Positives = 180/545 (33%), Gaps = 62/545 (11%)

Query: 436 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA--NTTSLR 493
            +  L+ L+L       N      +G+      ++        + +        + + L 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 494 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEI 552
              ++ +    SI  S         ++   +N+   +  ++      +KL+ F   N+  
Sbjct: 163 KDCINSDPQQKSIKKS-SRITLKDTQIGQLSNNITFVSKAV---MRLTKLRQFYMGNSPF 218

Query: 553 NGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLL 612
             E          ++ ++   +  Y    T      +  +L + E+ +   + + P +L 
Sbjct: 219 VAENICE-----AWENENSEYAQQYK---TEDLKWDNLKDLTDVEVYNCPNLTKLPTFL- 269

Query: 613 ENNTKLEFLYLVNDSLAGPFRLP--------IHSHKRLRFLDVSNNNFQ-GHIPVEIGDI 663
           +   +++ + +  +      +L             ++++ + +  NN +   +   +   
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK- 328

Query: 664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723
           +  L       N L+G +P+ FG+ I L  L+L+ N++T  IP +       +E LS ++
Sbjct: 329 MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAH 386

Query: 724 NSLKG-HIFSRIFSLRNLRWLLLEGNHFVG-------EIPQSLSKCSSLKGLYLNNNNLS 775
           N LK         S+  +  +    N            +  +  K  ++  + L+NN +S
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 776 GKIPRWLGNLKGLQHIVMPKNHLEG-------PIPVEFCRLDSLQILDISDNNISGSLPS 828
                       L  I +  N L              F     L  +D+  N ++  L  
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505

Query: 829 CFYPL---SIKQVHLSKNMLHGQLKEGTFFNCSSLVTL------DLSYNYLNGSIPDWID 879
            F       +  + LS N       +    N S+L         D   N      P+ I 
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQ--PLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

Query: 880 GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT----LHESY 935
               L+ L +  N++   V  ++     + +LD+ DN    +  S              Y
Sbjct: 564 LCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620

Query: 936 NNNSS 940
           +    
Sbjct: 621 DKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  214 bits (547), Expect = 5e-59
 Identities = 87/668 (13%), Positives = 178/668 (26%), Gaps = 145/668 (21%)

Query: 254 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKS 313
           S+     +T L L      G +       L+ LE L +  +                   
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRV-PDAIGQLTELEVLALGSHGEK---------------- 118

Query: 314 LDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL 373
                  + +     + + +  S         ++  T        +F++L    ++    
Sbjct: 119 -------VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 374 HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQII 433
             S+ +S   I      +      +  V           L    M       N+ F+   
Sbjct: 172 QKSIKKSSR-ITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMG------NSPFVAEN 222

Query: 434 GESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 493
                  +    +         +  D     L  L ++ + N      LP  L     ++
Sbjct: 223 ICEAWENENSEYA------QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 494 ILDVSFNQLTGSISS-------SPLVHLTSIEELRLSNNHFR---IPVSLEPLFNHSKLK 543
           +++V+ N+              +       I+ + +  N+ +   +  SL       KL 
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL---QKMKKLG 333

Query: 544 IFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKM 603
           + +   N++ G++    S     +L SL+L+ N                           
Sbjct: 334 MLECLYNQLEGKLPAFGSEI---KLASLNLAYN--------------------------Q 364

Query: 604 IGEFPNWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 662
           I E P        ++E L   ++ L   P      S   +  +D S N            
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD- 423

Query: 663 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 722
                             +  +    I +  ++LSNN+++    +  +     L  ++L 
Sbjct: 424 -----------------PLDPTPFKGINVSSINLSNNQISKFPKELFSTG-SPLSSINLM 465

Query: 723 NNSLKG-------HIFSRIFSLRNLRWLLLEGNHFVGEIPQSL--SKCSSLKGLYLNNNN 773
            N L                +   L  + L  N     +      +    L G+ L+ N+
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNS 524

Query: 774 LSGKIPRWLGNLKGLQHIVMP------KNHLEGPIPVEFCRLDSLQILDISDNNISGSLP 827
            S   P    N   L+   +        N      P       SL  L I  N+I   + 
Sbjct: 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVN 582

Query: 828 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL 887
                                          ++  LD+  N        ++    +    
Sbjct: 583 EKI--------------------------TPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

Query: 888 NLAHNNLE 895
            L ++  +
Sbjct: 617 MLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  212 bits (542), Expect = 2e-58
 Identities = 89/617 (14%), Positives = 179/617 (29%), Gaps = 97/617 (15%)

Query: 330 SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLK 389
           S+ S   +  L LE    +  +     +   T LE L L      ++          +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVP--DAIGQLTELEVLALGSHGEKVNERLFGPKGISANM 133

Query: 390 NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGST 449
           +                  +    +  D+    I  +     I   S  +LK   +    
Sbjct: 134 SDEQKQKMRMH-YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG--- 189

Query: 450 LGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 509
             +N+   + + +  L  L++ Y+ N+              +       + Q   +    
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLK 244

Query: 510 PLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 567
              +L  + ++ + N     ++P  L        L                        +
Sbjct: 245 -WDNLKDLTDVEVYNCPNLTKLPTFL------KALP-----------------------E 274

Query: 568 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL--LENNTKLEFLYLVN 625
           ++ ++++ N                         + + +    L       K++ +Y+  
Sbjct: 275 MQLINVACNR--------------------GISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 626 DSLA-GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS 684
           ++L   P    +   K+L  L+   N  +G +P   G     L   N++ N +     + 
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQITEIPANF 372

Query: 685 FGNVIFLQFLDLSNNKLTGEIPDHLAMC-CVNLEFLSLSNNSLKG-------HIFSRIFS 736
            G    ++ L  ++NKL   IP+         +  +  S N +          +    F 
Sbjct: 373 CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 737 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG-------KIPRWLGNLKGLQ 789
             N+  + L  N       +  S  S L  + L  N L+               N   L 
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491

Query: 790 HIVMPKNHLEG-PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS-------IKQVHLS 841
            I +  N L           L  L  +D+S N+ S   P+     S         Q    
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 842 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ 901
            N    +  E     C SL  L +  N +   + + I     +S L++  N         
Sbjct: 551 GNRTLREWPE-GITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSY 606

Query: 902 LCRLNQLQLLDLSDNNL 918
           +C   +  +  L  +  
Sbjct: 607 VCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  183 bits (467), Expect = 1e-48
 Identities = 56/421 (13%), Positives = 126/421 (29%), Gaps = 79/421 (18%)

Query: 670  FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG- 728
            FN  ++        S  +   +  L L     +G +PD +      LE L+L ++  K  
Sbjct: 62   FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVN 120

Query: 729  ---HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSK--CSSLKGLYLNNNNLSGKIPRWLG 783
                    I +  +         H+         +   S L    +N++     I +   
Sbjct: 121  ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 784  NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 843
                   I    N++   +     RL  L+   + ++          +       +    
Sbjct: 181  ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE----NSEYA 235

Query: 844  MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL--------E 895
              +    +  + N   L  +++        +P ++  L ++  +N+A N          +
Sbjct: 236  QQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 896  GEVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP 954
             +         ++Q++ +  NNL    + +                              
Sbjct: 295  WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-------------------------- 328

Query: 955  QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 1014
                                       +  L  L+   N+L G   P  G+  ++ +LNL
Sbjct: 329  ---------------------------MKKLGMLECLYNQLEG-KLPAFGSEIKLASLNL 360

Query: 1015 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR--QLVDLNTLAIFIVAYNNLSGKIP 1072
            ++N +T            +E+L  ++NKL   IP       ++ ++    +YN +     
Sbjct: 361  AYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 1073 E 1073
            +
Sbjct: 420  K 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  173 bits (440), Expect = 3e-45
 Identities = 81/682 (11%), Positives = 182/682 (26%), Gaps = 141/682 (20%)

Query: 41  TDCCQW---EGVECSNTTGRVIGLYLSETY-SGEYWYLNASLFTPFQQLESLDLSWNNIA 96
            +   W    GV  ++  GRV GL L     SG    +  ++     +LE L L  +   
Sbjct: 64  KELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGR---VPDAIGQ-LTELEVLALGSHGEK 118

Query: 97  GCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARL--SSLRSLYLSDNRLEGSIDVK 154
                 G +G+S   + +        +    +    R   S L    ++ +  + SI  K
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK-K 177

Query: 155 ELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDM 214
                    ++    N I    VSK + +L                        L    M
Sbjct: 178 SSRITLKDTQIGQLSNNITF--VSKAVMRLT----------------------KLRQFYM 213

Query: 215 SGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGS 274
             +              +     +  +        +       L  LT + + +      
Sbjct: 214 GNSP---------FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264

Query: 275 IDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG-------LRKLKSLDLSGVGIRDGNKL 327
           +      +L  ++ +++  N   + E  +             K++ + +    ++    +
Sbjct: 265 LP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP-V 322

Query: 328 LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPS 387
             S+     L  L    N     L       +   L  L L  + +   +  +       
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKL---PAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQ 378

Query: 388 LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG 447
           ++NLS +  ++  + +         +  +D  +  I                        
Sbjct: 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI------------------------ 414

Query: 448 STLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG--- 504
            ++   +   LD       ++  + + NN +        +  + L  +++  N LT    
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474

Query: 505 ---SISSSPLVHLTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEINGEINESH 560
                 +    +   +  + L  N   ++            L   D   N  +    +  
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR-ATTLPYLVGIDLSYNSFSKFPTQPL 533

Query: 561 SLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF 620
           + +    LK   + +                     +    + + E+P            
Sbjct: 534 NSS---TLKGFGIRNQ-------------------RDAQGNRTLREWPEG---------- 561

Query: 621 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS 680
                          I     L  L + +N+ +  +  +   I P++   +I  N     
Sbjct: 562 ---------------ITLCPSLTQLQIGSNDIRK-VNEK---ITPNISVLDIKDNPNISI 602

Query: 681 IPSSFGNVIFLQFLDLSNNKLT 702
             S     I      L  +K  
Sbjct: 603 DLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.3 bits (235), Expect = 8e-20
 Identities = 25/227 (11%), Positives = 64/227 (28%), Gaps = 13/227 (5%)

Query: 852  GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL 911
            G      +    +   +         ++   +++ L+L      G VP  + +L +L++L
Sbjct: 51   GFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL 110

Query: 912  DLSDNNLHG----LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE 967
             L  +          P         E           ++ +F    P+      I +   
Sbjct: 111  ALGSHGEKVNERLFGPKGISANMSDEQKQKMRM---HYQKTFVDYDPREDFSDLIKDCIN 167

Query: 968  FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF 1027
               +  +     R+      +    N +   +   +  LT+++   + ++          
Sbjct: 168  SDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 1028 SNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 1074
                     +  Y +       +  +L  L    V       K+P +
Sbjct: 227  WEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  245 bits (628), Expect = 5e-70
 Identities = 115/726 (15%), Positives = 212/726 (29%), Gaps = 156/726 (21%)

Query: 362  NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFA 421
             +  +T     L  +  +   ++  S KNL +S   +  + S   F  F  L+ LD+   
Sbjct: 6    VVPNITYQCMEL--NFYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLS-- 60

Query: 422  RIALNTSFLQIIGES---MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 478
                      I   +   +  L  L L+G+ +      +       L+ LQ+L     +L
Sbjct: 61   ----RCEIQTIEDGAYQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNL 112

Query: 479  RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPL 536
                 + + +  +L+ L+V+ N +          +LT++E L LS+N  +      L  L
Sbjct: 113  ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 537  FN-HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKE 595
                      D   N +N     +       +L  L+L +N                   
Sbjct: 173  HQMPLLNLSLDLSLNPMNFIQPGAFKE---IRLHKLTLRNN------------------- 210

Query: 596  AELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH---KRLRFLDVSNNNF 652
                            ++    LE   LV         L        + L  L +     
Sbjct: 211  ------FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 653  QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC 712
                                 ++     I   F  +  +    L +  +           
Sbjct: 265  A-------------------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--- 302

Query: 713  CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNN 772
                + L L N         ++ SL+ L +   +G         S     SL+ L L+ N
Sbjct: 303  NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRN 357

Query: 773  NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 832
             LS                       +G          SL+ LD+S N +     +    
Sbjct: 358  GLS----------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 833  LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 892
              ++ +    + L    +   F +  +L+ LD+S+ +   +     +GLS L  L +A N
Sbjct: 396  EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 893  NLEGEV-PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSI 951
            + +    P     L  L  LDLS   L  L P+ F++                       
Sbjct: 456  SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS----------------------- 492

Query: 952  SGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 1011
                                          LS L  L++S N            L  +Q 
Sbjct: 493  ------------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 1012 LNLSHNNLTGTIPLTFSNL-RHIESLDLSYNKLSGKIP-RQLVD-LNTLAIFIVAYNNLS 1068
            L+ S N++  +      +    +  L+L+ N  +     +  +  +      +V    + 
Sbjct: 523  LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

Query: 1069 GKIPEW 1074
               P  
Sbjct: 583  CATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  225 bits (575), Expect = 6e-63
 Identities = 101/641 (15%), Positives = 209/641 (32%), Gaps = 72/641 (11%)

Query: 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 265
             + + LD+S N + +L             +L+ LDL           +   LS L++L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 266 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 325
           L+ N +Q  +    F  LS+L++L   +  + ++E +     L+ LK L+++   I+   
Sbjct: 83  LTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFK 140

Query: 326 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY--LTLDDSSLHISLLQSIGS 383
            L +   +  +L  L L SN   +      +L     +    L+LD S   ++ +Q    
Sbjct: 141 -LPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 384 IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 443
               L  L++     +  +          LE   +         +  +    ++  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 444 SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT 503
           ++    L                         +     +       T++    +    + 
Sbjct: 258 TIEEFRLAYL----------------------DYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 504 GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLT 563
                    +    + L L N  F        L +  +L     K      E++      
Sbjct: 296 RV---KDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS--- 348

Query: 564 PKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 623
               L+ L LS N                        +   G          T L++L L
Sbjct: 349 ----LEFLDLSRN-----------------------GLSFKGCCSQSDF-GTTSLKYLDL 380

Query: 624 VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS 683
             + +       +   + L  LD  ++N +      +   L +L+Y +IS      +   
Sbjct: 381 SFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 684 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 743
            F  +  L+ L ++ N         +     NL FL LS   L+    +   SL +L+ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 744 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL-KGLQHIVMPKNHLEGPI 802
            +  N+F           +SL+ L  + N++     + L +    L  + + +N      
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559

Query: 803 PVEFCR--LDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 841
             +     +   + L +    +  + PS    + +  ++++
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  212 bits (542), Expect = 1e-58
 Identities = 131/661 (19%), Positives = 212/661 (32%), Gaps = 110/661 (16%)

Query: 111 NNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGN 170
            + K LDLS N   +    S      L+ L LS   ++   D     SL  L  L + GN
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGN 86

Query: 171 KIDKFMVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL 228
            I    +    GLS L+ L    T      +         L+ L+++ N I +  +P+  
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEY- 144

Query: 229 ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT----SLHLSHNILQGSIDAKEFDSLS 284
              S L+ L+ LDL  N   +   + +  L  +     SL LS N +   I    F  + 
Sbjct: 145 --FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI- 200

Query: 285 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 344
            L +L + +N      +    +GL  L+   L              +G F +   L    
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL-------------VLGEFRNEGNLEKFD 247

Query: 345 NNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI--FPSLKNLSMSGCEVNGVL 402
            +          L    NL       + L   L   I       ++ + S+    +  V 
Sbjct: 248 KSA---------LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 403 SGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGL 462
               F +    +HL++      +N  F Q     + SLK L+ + +  G   S       
Sbjct: 299 D---FSYNFGWQHLEL------VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS------E 343

Query: 463 CPLAHLQELYIDNNDL--RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
             L  L+ L +  N L  +G        TTSL+ LD+SFN +    S+   + L  +E L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHL 401

Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDS 580
              +++ +         +   L   D  +       N   +      L+ L ++ N    
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLEVLKMAGN---- 455

Query: 581 VTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK 640
                                     F   +      L FL L                 
Sbjct: 456 ---------------------SFQENFLPDIFTELRNLTFLDL----------------- 477

Query: 641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 700
                  S    +   P      L SL   N+S N         +  +  LQ LD S N 
Sbjct: 478 -------SQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 701 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS--LRNLRWLLLEGNHFVGEIPQSL 758
           +       L     +L FL+L+ N        + F   +++ R LL+E        P   
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

Query: 759 S 759
            
Sbjct: 590 Q 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  204 bits (521), Expect = 6e-56
 Identities = 109/643 (16%), Positives = 202/643 (31%), Gaps = 99/643 (15%)

Query: 85  LESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSD 144
            ++LDLS+N +                 L++LDLS          +   LS L +L L+ 
Sbjct: 30  TKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 145 NRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGTGFKGTFDVRE 202
           N ++          L  L++L      +          L  LK L ++    +       
Sbjct: 86  NPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA---RLS 259
           F +  NLE LD+S N+I ++        L  L ++  L+L  +L  N +        +  
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 260 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY-----RGLRKLKSL 314
            L  L L +N    ++       L+ LE   +   E  N      +      GL  L   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 315 DLSGVGIRD-GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL 373
           +     +    + ++       ++++  L S      +   ++       ++L L    +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT----IERVKDFSYNFGWQHLEL----V 312

Query: 374 HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQII 433
           +    Q       SLK L+ +  +     S        SLE LD+    +    SF    
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGL----SFKGCC 365

Query: 434 GES---MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP-WCLANT 489
            +S     SLKYL LS      N    +      L  L+ L   +++L+         + 
Sbjct: 366 SQSDFGTTSLKYLDLSF-----NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 490 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 549
            +L  LD+S      + +      L+S+E L+++ N F+     +       L   D   
Sbjct: 421 RNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 550 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 609
            ++        +      L+ L++S N                                 
Sbjct: 480 CQLEQLSPT--AFNSLSSLQVLNMSHN--------------------------------- 504

Query: 610 WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 669
                            +       P      L+ LD S N+       E+     SL +
Sbjct: 505 -----------------NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547

Query: 670 FNISMNALDGSIPSS--FGNVIFLQFLDLSNNKLTGEIPDHLA 710
            N++ N    +         +   + L +   ++    P    
Sbjct: 548 LNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  193 bits (493), Expect = 2e-52
 Identities = 75/446 (16%), Positives = 142/446 (31%), Gaps = 58/446 (13%)

Query: 646  DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 705
                 NF   IP    ++  S    ++S N L      SF +   LQ LDLS  ++    
Sbjct: 13   QCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 706  PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLK 765
                     +L  L L+ N ++         L +L+ L+    +        +    +LK
Sbjct: 69   DGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 766  GLYLNNNNL-SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI----LDISDN 820
             L + +N + S K+P +  NL  L+H+ +  N ++     +   L  + +    LD+S N
Sbjct: 128  ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 821  NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS------I 874
             ++   P  F  + + ++ L  N     + +      + L    L               
Sbjct: 188  PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 875  PDWIDGLSQLSHLNLAHNNLE---GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 931
               ++GL  L+        L+    ++      L  +    L    +  +    ++    
Sbjct: 248  KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 932  HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 991
            H    N      P                                     L L +   L+
Sbjct: 308  HLELVNCKFGQFPT------------------------------------LKLKSLKRLT 331

Query: 992  CNKLVGHIPPQIGNLTRIQTLNLSHNNLT--GTIPLTFSNLRHIESLDLSYNKLSGKIPR 1049
                 G       +L  ++ L+LS N L+  G    +      ++ LDLS+N +   +  
Sbjct: 332  FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS 390

Query: 1050 QLVDLNTLAIFIVAYNNLSGKIPEWT 1075
              + L  L      ++NL        
Sbjct: 391  NFLGLEQLEHLDFQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  171 bits (435), Expect = 8e-45
 Identities = 92/497 (18%), Positives = 168/497 (33%), Gaps = 40/497 (8%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNN-NVLSSLA 132
           L    F+    L+ L     N+A          +  L  LK L+++ N   +  +    +
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 133 RLSSLRSLYLSDNRLEGSIDVKELDSLRDLE----ELDIGGNKIDKFMVSK-GLSKLKSL 187
            L++L  L LS N+++      +L  L  +      LD+  N ++          +L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 188 GLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLER--LSRLSKLKKLDLRGN 245
            L                   LEV  +   E  N    +  ++  L  L  L   + R  
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 246 LCN---NSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVS 302
             +   + I+     L++++S  L    ++   D   F      + L++ + +       
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTL 322

Query: 303 RGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTN 362
                L+ LK L  +            S    PSL  L L  N  +     +Q     T+
Sbjct: 323 ----KLKSLKRLTFTSNKG----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 363 LEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFAR 422
           L+YL L  S   +  + S       L++L      +  +     F   ++L +LD+    
Sbjct: 375 LKYLDL--SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 423 IALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSL 482
                     I   + SL+ L ++G++        L      L +L  L +    L    
Sbjct: 433 T---RVAFNGIFNGLSSLEVLKMAGNSF---QENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 483 PWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFNHS 540
           P    + +SL++L++S N      +      L S++ L  S NH        L+     S
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFP--S 543

Query: 541 KLKIFDAKNNEINGEIN 557
            L   +   N+      
Sbjct: 544 SLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  123 bits (311), Expect = 3e-29
 Identities = 76/435 (17%), Positives = 137/435 (31%), Gaps = 56/435 (12%)

Query: 84  QLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLS 143
           +L  L L  N  +       ++GL+ L   +++        N      + L  L +L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 144 DNRLE-----GSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTF 198
           + RL          +   + L ++    +    I++          + L L    F    
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF- 319

Query: 199 DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCN--NSILSSVA 256
                    +L+ L  + N+  N            L  L+ LDL  N  +       S  
Sbjct: 320 ---PTLKLKSLKRLTFTSNKGGN------AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 257 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDL 316
             +SL  L LS N +        F  L  LE LD   + +  +     +  LR L  LD+
Sbjct: 371 GTTSLKYLDLSFNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 317 SGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 376
           S                            +           +  ++LE L +  +S   +
Sbjct: 429 SH--------------------------THTRVAF--NGIFNGLSSLEVLKMAGNSFQEN 460

Query: 377 LLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGES 436
            L  I +   +L  L +S C++  +     F    SL+ L+M         S      + 
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNF---FSLDTFPYKC 516

Query: 437 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP--WCLANTTSLRI 494
           + SL+ L  S + +    +    +     + L  L +  ND   +      L      R 
Sbjct: 517 LNSLQVLDYSLNHI---MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 573

Query: 495 LDVSFNQLTGSISSS 509
           L V   ++  +  S 
Sbjct: 574 LLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.3 bits (222), Expect = 2e-18
 Identities = 48/220 (21%), Positives = 81/220 (36%), Gaps = 32/220 (14%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
           F   +QLE LD   +N+   +E      L    NL  LD+S              LSSL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTF 198
            L ++ N  + +        LR+L  LD+   +++                         
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-----------------------QL 485

Query: 199 DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL 258
               F+S ++L+VL+MS N   +L           L+ L+ LD   N    S    +   
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFP----YKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 259 -SSLTSLHLSHNILQGSIDAKEF-DSLSNLEELDINDNEI 296
            SSL  L+L+ N    + + + F   + +  +L +    +
Sbjct: 542 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  236 bits (603), Expect = 1e-66
 Identities = 105/533 (19%), Positives = 189/533 (35%), Gaps = 29/533 (5%)

Query: 410 FKSLEHLDMRFARIA--LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 467
             S E L+  F  +    NT+F       + +L +L L+   +      I +        
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF-----SRLINLTFLDLTRCQI----YWIHEDTFQSQHR 82

Query: 468 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 527
           L  L +  N L       L+   +L+ L      ++ SI   PL +  ++E L L +NH 
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHI 141

Query: 528 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 587
              + L   F   KLK+ D +NN I+    E  S   +    SL+L+ N  D        
Sbjct: 142 SS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN--DIAGIEPGA 198

Query: 588 YHQHELKEAELSHIKMIGEFPNWLLENN-TKLEFLYLVNDSLAGPFRLPIHSHKR--LRF 644
           +     +       + +      L  +    L      +                  +  
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 645 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 704
           +++  + F   I          L   +++   L   +PS    +  L+ L LS NK    
Sbjct: 259 INLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFEN- 315

Query: 705 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH--FVGEIPQSLSKC 761
           +    A    +L  LS+  N+ +  + +     L NLR L L  +           L   
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 762 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDN 820
           S L+ L L+ N               L+ + +    L+       F  L  L++L++S +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 821 NISGSLPSCFYPL-SIKQVHLSKNMLHG--QLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 877
            +  S    F  L +++ ++L  N        K  +      L  L LS+  L+      
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 878 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 930
              L  ++H++L+HN L       L  L  + L +L+ N++  ++PS     +
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  226 bits (579), Expect = 2e-63
 Identities = 119/643 (18%), Positives = 212/643 (32%), Gaps = 114/643 (17%)

Query: 469  QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 528
            +    +N  L   +P  L    S   L+ SFN L  +I ++    L ++  L L+     
Sbjct: 15   KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY 70

Query: 529  IPVSLEP--LFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 586
                +      +  +L       N +      + S      LK L               
Sbjct: 71   ---WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA--LKHLFFIQTG--------- 116

Query: 587  LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLD 646
                             I       L N   LE LYL ++ ++          ++L+ LD
Sbjct: 117  -----------------ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 647  VSNNNFQGHIPVEIGDILPSL--VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 704
              NN    ++  E    L     +  N++ N +   I     +    Q L+    +    
Sbjct: 160  FQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 705  IPDHLAMCCV-NLEFLSLSNNSLKGHIFSRIF---SLRNLRWLLLEGNHFVGEIPQSLSK 760
            I   L    + +L   +  +   +  I   +F      ++  + L+ ++F      +   
Sbjct: 218  IFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 761  CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 820
             S L+ L L   +LS ++P  L  L  L+ +V+  N  E    +      SL  L I  N
Sbjct: 277  FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 821  NISGSLPS-CFYPL-SIKQVHLSKNMLHG-QLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 877
                 L + C   L +++++ LS + +           N S L +L+LSYN       + 
Sbjct: 336  TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 878  IDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 936
                 QL  L+LA   L+  +       L+ L++L+LS + L       FD         
Sbjct: 396  FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-------- 447

Query: 937  NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV 996
                                                         L  L  L+L  N   
Sbjct: 448  ---------------------------------------------LPALQHLNLQGNHFP 462

Query: 997  GHI---PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 1053
                     +  L R++ L LS  +L+      F++L+ +  +DLS+N+L+      L  
Sbjct: 463  KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 1054 LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 1093
            L  + + + A N++S  +P         ++        NP  C
Sbjct: 523  LKGIYLNL-ASNHISIILPSL---LPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  219 bits (559), Expect = 7e-61
 Identities = 111/577 (19%), Positives = 199/577 (34%), Gaps = 59/577 (10%)

Query: 467  HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 526
              + L    N L        +   +L  LD++  Q+   I          ++ L L+ N 
Sbjct: 34   STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANP 92

Query: 527  FRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 586
                ++   L     LK        I+        L  +  L+SL L SN+  S+  PK 
Sbjct: 93   LIF-MAETALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 587  LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL-VNDSLAGPFRLPIHSHKRLRFL 645
               +  LK  +  +   I       + +  +   L L +N +               + L
Sbjct: 150  FPTEK-LKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 646  DVSNNNFQGHIPVEI-GDILPSLVYFNISMNALDGSIPSSFGNV--IFLQFLDLSNNKLT 702
            +         I   +    + SL          +   P+ F  +  + ++ ++L  +   
Sbjct: 208  NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 703  GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCS 762
                +    C   L+ L L+   L   + S +  L  L+ L+L  N F      S S   
Sbjct: 268  NISSNTFH-CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 763  SLKGLYLNNNNLSGKI-PRWLGNLKGLQHIVMPKNHLE--GPIPVEFCRLDSLQILDISD 819
            SL  L +  N    ++    L NL+ L+ + +  + +E      ++   L  LQ L++S 
Sbjct: 326  SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 820  NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 878
            N         F     ++ + L+   L  +  +  F N   L  L+LS++ L+ S     
Sbjct: 386  NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 879  DGLSQLSHLNLAHNNLEGEVPIQ---LCRLNQLQLLDLSDNNLHGLIPSCFDN----TTL 931
            DGL  L HLNL  N+       +   L  L +L++L LS  +L  +    F +      +
Sbjct: 446  DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

Query: 932  HESYNN-NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 990
              S+N   SS  +       I                                    L+L
Sbjct: 506  DLSHNRLTSSSIEALSHLKGIY-----------------------------------LNL 530

Query: 991  SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF 1027
            + N +   +P  +  L++ +T+NL  N L  T    +
Sbjct: 531  ASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (539), Expect = 3e-58
 Identities = 117/624 (18%), Positives = 207/624 (33%), Gaps = 57/624 (9%)

Query: 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 265
            N+ E L+ S N +  +         SRL  L  LDL           +      L +L 
Sbjct: 32  PNSTECLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 266 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 325
           L+ N L   +          L+ L      I +++        + L+SL L    I    
Sbjct: 88  LTANPLI-FMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSIK 145

Query: 326 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF 385
             L        L  L  ++N       + +++ +      L+L+ +   I+ ++      
Sbjct: 146 --LPKGFPTEKLKVLDFQNNAIHY--LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 386 PSLKNLSMSGCEVNGV-LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLS 444
              ++L+  G +   V   G      +SL            + S     G    S++ ++
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD-EDISPAVFEGLCEMSVESIN 260

Query: 445 LSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 504
           L        SS          + LQEL +    L   LP  L   ++L+ L +S N+   
Sbjct: 261 LQKHYFFNISSNTFH----CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN 315

Query: 505 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTP 564
            +      +  S+  L +  N  R+ +    L N   L+  D  +++I      +  L  
Sbjct: 316 -LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 565 KFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 624
              L+SL+LS N                                    +   +LE L L 
Sbjct: 375 LSHLQSLNLSYNE--------------------------PLSLKTEAFKECPQLELLDLA 408

Query: 625 NDSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI-- 681
              L     + P  +   L+ L++S++        ++ D LP+L + N+  N        
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 682 -PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNL 740
             +S   +  L+ L LS   L+  I  H       +  + LS+N L       +  L+ +
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 741 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP-RWLGNLKGLQHIVMPKNHLE 799
             L L  NH    +P  L   S  + + L  N L       +      L+        LE
Sbjct: 527 Y-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYF-----LEWYKENMQKLE 580

Query: 800 GPIPVEFCRLDSLQILDISDNNIS 823
                       L+ + +SD  +S
Sbjct: 581 DTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  204 bits (522), Expect = 5e-56
 Identities = 90/512 (17%), Positives = 163/512 (31%), Gaps = 51/512 (9%)

Query: 580  SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 639
            + +  +    +   K     ++  + E P  L  +    E L    + L           
Sbjct: 1    TTSSDQKCIEKEVNKTYNCENLG-LNEIPGTLPNS---TECLEFSFNVLPTIQNTTFSRL 56

Query: 640  KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 699
              L FLD++                  L    ++ N L     ++      L+ L     
Sbjct: 57   INLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 700  KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 759
             ++      L      LE L L +N +      + F    L+ L  + N       + +S
Sbjct: 116  GISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 760  KCSSLKGLYLN-NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP--VEFCRLDSLQILD 816
                   L LN N N    I     +    Q +          I   ++   + SL +  
Sbjct: 175  SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 817  ISDNNISGSLPSCF---YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 873
              D +     P+ F     +S++ ++L K+     +   TF   S L  LDL+  +L+  
Sbjct: 235  FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-E 292

Query: 874  IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS-CFDN---- 928
            +P  + GLS L  L L+ N  E    I       L  L +  N     + + C +N    
Sbjct: 293  LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 929  TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 988
              L  S+++  + D       +                               LS L  L
Sbjct: 353  RELDLSHDDIETSDCCNLQLRN-------------------------------LSHLQSL 381

Query: 989  DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLT-FSNLRHIESLDLSYNKLSGKI 1047
            +LS N+ +           +++ L+L+   L      + F NL  ++ L+LS++ L    
Sbjct: 382  NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441

Query: 1048 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA 1079
             +    L  L    +  N+      + T    
Sbjct: 442  EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  200 bits (511), Expect = 1e-54
 Identities = 113/670 (16%), Positives = 220/670 (32%), Gaps = 101/670 (15%)

Query: 110 LNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGG 169
            N+ + L+ S N       ++ +RL +L  L L+  ++   I      S   L+ L +  
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTA 90

Query: 170 NKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 229
           N +                                    L+ L      I ++       
Sbjct: 91  NPLI-----------------------FMAETALSGPKALKHLFFIQTGISSIDFIP--- 124

Query: 230 RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE-- 287
            L     L+ L L  N  ++  L        L  L   +N +   +  ++  SL      
Sbjct: 125 -LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNL 182

Query: 288 ELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 347
            L++N N+I  +E           +SL+  G              +  SL     E  + 
Sbjct: 183 SLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 348 TATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 407
                   E     ++E + L       ++  +    F  L+ L ++   ++ + S  G 
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLSELPS--GL 297

Query: 408 PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 467
               +L+ L +   +     +  QI   + PSL +LS+ G+T       +    L  L +
Sbjct: 298 VGLSTLKKLVLSANKF---ENLCQISASNFPSLTHLSIKGNTKRLE---LGTGCLENLEN 351

Query: 468 LQELYIDNNDLRGS--LPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
           L+EL + ++D+  S      L N + L+ L++S+N+   S+ +        +E L L+  
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFT 410

Query: 526 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 585
             ++  +  P  N   LK+ +  ++ ++    +     P   L+ L+L  N         
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA--LQHLNLQGN--------- 459

Query: 586 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 645
                         H           L+   +LE L L                      
Sbjct: 460 --------------HFPKGNIQKTNSLQTLGRLEILVL---------------------- 483

Query: 646 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 705
             S  +    I       L  + + ++S N L  S   +  ++  +  L+L++N ++  +
Sbjct: 484 --SFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIIL 539

Query: 706 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLK 765
           P  L +       ++L  N L     +  F    L W                     L+
Sbjct: 540 PSLLPI-LSQQRTINLRQNPLDCTCSNIYF----LEWYKENMQKLEDTEDTLCENPPLLR 594

Query: 766 GLYLNNNNLS 775
           G+ L++  LS
Sbjct: 595 GVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  200 bits (511), Expect = 2e-54
 Identities = 112/643 (17%), Positives = 207/643 (32%), Gaps = 104/643 (16%)

Query: 114 KMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKID 173
           K  +      N  +  +L   +S   L  S N L  +I       L +L  LD+   +I 
Sbjct: 15  KTYNCENLGLNE-IPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY 70

Query: 174 KFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 233
                                        F S + L+ L ++ N +  +   +    LS 
Sbjct: 71  -----------------------WIHEDTFQSQHRLDTLVLTANPLIFM--AETA--LSG 103

Query: 234 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 293
              LK L       ++     +    +L SL+L  N +  SI   +      L+ LD  +
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQN 162

Query: 294 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ---SMGSFPSLNTLHLESNNFTAT 350
           N I  +        L++  +L L+     +GN +              +L+         
Sbjct: 163 NAIHYLSKE-DMSSLQQATNLSLN----LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 351 LTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHF 410
           +    +     +L   T +D            ++F  L  +                   
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDE----DISPAVFEGLCEM------------------- 254

Query: 411 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 470
            S+E ++++        +           L+ L L+           L  GL  L+ L++
Sbjct: 255 -SVESINLQKHYF---FNISSNTFHCFSGLQELDLTA-----THLSELPSGLVGLSTLKK 305

Query: 471 LYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-I 529
           L +  N          +N  SL  L +  N     + +  L +L ++ EL LS++     
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 530 PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYH 589
                 L N S L+  +   NE      E+    P  QL+ L L+               
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP--QLELLDLAFT------------- 410

Query: 590 QHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN 649
                      +K+         +N   L+ L L +  L             L+ L++  
Sbjct: 411 ----------RLKVKD--AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 650 NNFQGHIPVEIGDI--LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPD 707
           N+F      +   +  L  L    +S   L      +F ++  +  +DLS+N+LT    +
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 708 HLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 750
            L+       +L+L++N +   + S +  L   R + L  N  
Sbjct: 519 ALSHL--KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  180 bits (458), Expect = 9e-48
 Identities = 102/565 (18%), Positives = 194/565 (34%), Gaps = 47/565 (8%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           +  + F+    L  LDL+   I         +     + L  L L+ N       ++L+ 
Sbjct: 48  IQNTTFSRLINLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSG 191
             +L+ L+     +  SID   L + + LE L +G N I    +       KLK L    
Sbjct: 104 PKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162

Query: 192 TGFKGTFDVREFDSFNNLEV--LDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNN 249
                     +  S        L+++GN+I  +            +  + L+  G     
Sbjct: 163 NAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIE-----PGAFDSAVFQSLNFGGTQNLL 216

Query: 250 SILSSVA--RLSSLTSLHLSHNILQGSIDAKEFDSLS--NLEELDINDNEIDNVEVSRGY 305
            I   +    + SL          +  I    F+ L   ++E +++  +   N+  S  +
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQKHYFFNIS-SNTF 274

Query: 306 RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY 365
                L+ LDL+   +   ++L   +    +L  L L +N F      +    NF +L +
Sbjct: 275 HCFSGLQELDLTATHL---SELPSGLVGLSTLKKLVLSANKFENLCQIS--ASNFPSLTH 329

Query: 366 LTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV-LSGQGFPHFKSLEHLDMRFARIA 424
           L++  ++  + L         +L+ L +S  ++           +   L+ L++ +    
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP- 388

Query: 425 LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW 484
              S      +  P L+ L L+ + L    ++        L  L+ L + ++ L  S   
Sbjct: 389 --LSLKTEAFKECPQLELLDLAFTRLKVKDAQSP---FQNLHLLKVLNLSHSLLDISSEQ 443

Query: 485 CLANTTSLRILDVSFNQLTGSISSSP--LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKL 542
                 +L+ L++  N            L  L  +E L LS       +      +   +
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMM 502

Query: 543 KIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH-- 600
              D  +N +     E+ S         L+L+SN+   +  P  L    + +   L    
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGIY---LNLASNHISII-LPSLLPILSQQRTINLRQNP 558

Query: 601 ----IKMIGEFPNWLLENNTKLEFL 621
                  I  F  W  EN  KLE  
Sbjct: 559 LDCTCSNIY-FLEWYKENMQKLEDT 582

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.5 bits (233), Expect = 1e-19
 Identities = 30/243 (12%), Positives = 58/243 (23%), Gaps = 54/243 (22%)

Query: 858  SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 917
            +S   L+ S+N L          L  L+ L+L    +           ++L  L L+ N 
Sbjct: 33   NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 918  LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977
            L  +  +                                                     
Sbjct: 93   LIFMAETALSG------------------------------------------------- 103

Query: 978  QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037
                   L  L      +       + N   +++L L  N+++            ++ LD
Sbjct: 104  ----PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 1038 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS-GKIPEWTAQFATFNKSSYDGNPFLCGLP 1096
               N +       +  L       +  N      I       A F   ++ G   L  + 
Sbjct: 160  FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 1097 LPI 1099
              +
Sbjct: 220  KGL 222

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  223 bits (570), Expect = 2e-65
 Identities = 75/300 (25%), Positives = 123/300 (41%), Gaps = 33/300 (11%)

Query: 645 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS--IPSSFGNVIFLQFLDLSN-NKL 701
            D  N  + G +          +   ++S   L     IPSS  N+ +L FL +   N L
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 702 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 761
            G IP  +A     L +L +++ ++ G I   +  ++ L  L    N   G +P S+S  
Sbjct: 90  VGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 762 SSLKGLYLNNNNLSGKIPRWLGNLKGL-QHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 820
            +L G+  + N +SG IP   G+   L   + + +N L G IP  F  L +L  +D+S N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207

Query: 821 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 880
            + G                             F +  +   + L+ N L   +   +  
Sbjct: 208 MLEGDASV------------------------LFGSDKNTQKIHLAKNSLAFDLGK-VGL 242

Query: 881 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL-HESYNNNS 939
              L+ L+L +N + G +P  L +L  L  L++S NNL G IP   +       +Y NN 
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  203 bits (518), Expect = 2e-58
 Identities = 71/378 (18%), Positives = 124/378 (32%), Gaps = 108/378 (28%)

Query: 753  EIPQSLSKCSSL----KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG--PIPVEF 806
            +I + L   ++L          N    G +         + ++ +   +L    PIP   
Sbjct: 13   QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 807  CRLDSLQILDISD-NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 865
              L  L  L I   NN+ G +P                              + L  L +
Sbjct: 73   ANLPYLNFLYIGGINNLVGPIPP------------------------AIAKLTQLHYLYI 108

Query: 866  SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC 925
            ++  ++G+IPD++  +  L  L+ ++N L G +P  +  L  L  +    N + G IP  
Sbjct: 109  THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 926  FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 985
            +                                                    G    L 
Sbjct: 169  Y----------------------------------------------------GSFSKLF 176

Query: 986  AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 1045
              + +S N+L G IPP   NL  +  ++LS N L G   + F + ++ + + L+ N L+ 
Sbjct: 177  TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 1046 KIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ-----------------------FATFN 1082
             +  ++     L    +  N + G +P+   Q                          F+
Sbjct: 236  DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 1083 KSSYDGNPFLCGLPLPIC 1100
             S+Y  N  LCG PLP C
Sbjct: 295  VSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  202 bits (516), Expect = 3e-58
 Identities = 85/337 (25%), Positives = 131/337 (38%), Gaps = 63/337 (18%)

Query: 694  LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG--HIFSRIFSLRNLRWLLLEG-NHF 750
             D  N    G + D        +  L LS  +L     I S + +L  L +L + G N+ 
Sbjct: 31   TDCCNRTWLGVLCDTDTQT-YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 751  VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 810
            VG IP +++K + L  LY+ + N+SG IP +L  +K L  +    N L G +P     L 
Sbjct: 90   VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 811  SLQILDISDNNISGSLPSCFYPLS--IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 868
            +L  +    N ISG++P  +   S     + +S+N L G++   TF N  +L  +DLS N
Sbjct: 150  NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANL-NLAFVDLSRN 207

Query: 869  YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928
             L G              ++LA N+L  ++  ++     L  LDL +N ++G +P     
Sbjct: 208  MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 929  TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 988
                                                                 L  L  L
Sbjct: 267  -----------------------------------------------------LKFLHSL 273

Query: 989  DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL 1025
            ++S N L G I PQ GNL R      ++N      PL
Sbjct: 274  NVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  183 bits (466), Expect = 2e-51
 Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 4/214 (1%)

Query: 616 TKLEFLYLVND-SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 674
             L FLY+    +L GP    I    +L +L +++ N  G IP  +   + +LV  + S 
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSY 134

Query: 675 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI 734
           NAL G++P S  ++  L  +    N+++G IPD           +++S N L G I    
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 735 FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794
            +L NL ++ L  N   G+         + + ++L  N+L+  + + +G  K L  + + 
Sbjct: 195 ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR 252

Query: 795 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 828
            N + G +P    +L  L  L++S NN+ G +P 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  159 bits (404), Expect = 3e-43
 Identities = 75/358 (20%), Positives = 114/358 (31%), Gaps = 83/358 (23%)

Query: 475 NNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV-HLTSIEELRLSNNHFRIPVSL 533
           N    G L      T  +  LD+S   L         + +L  +  L +           
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--------- 85

Query: 534 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 593
                           N + G I    ++    QL  L ++                   
Sbjct: 86  ---------------INNLVGPI--PPAIAKLTQLHYLYITHTN---------------- 112

Query: 594 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 653
               +S     G  P++ L     L  L    ++L+G     I S   L  +    N   
Sbjct: 113 ----VS-----GAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 654 GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCC 713
           G IP   G          IS N L G IP +F N + L F+DLS N L G+         
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDAS------- 214

Query: 714 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 773
                                 S +N + + L  N    ++   +    +L GL L NN 
Sbjct: 215 ------------------VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR 255

Query: 774 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI--SGSLPSC 829
           + G +P+ L  LK L  + +  N+L G IP     L    +   ++N       LP+C
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  125 bits (317), Expect = 1e-31
 Identities = 57/329 (17%), Positives = 113/329 (34%), Gaps = 86/329 (26%)

Query: 409 HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG---------STLGTNSSRILD 459
               + +LD+    +         +  ++P L +L + G           +         
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAK------- 99

Query: 460 QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEE 519
                L  L  LYI + ++ G++P  L+   +L  LD S+N L+G++  S +  L ++  
Sbjct: 100 -----LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVG 153

Query: 520 LRLSNNHF--RIPVSLEPLFNHSKLKIF-DAKNNEINGEINESHSLTPKFQLKSLSLSSN 576
           +    N     IP S     + SKL        N + G+I  + +      L  + LS N
Sbjct: 154 ITFDGNRISGAIPDS---YGSFSKLFTSMTISRNRLTGKIPPTFA---NLNLAFVDLSRN 207

Query: 577 YGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPI 636
                                     + G+       ++   + ++L             
Sbjct: 208 -------------------------MLEGDASVLFG-SDKNTQKIHL------------- 228

Query: 637 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL 696
                      + N+    +  ++G    +L   ++  N + G++P     + FL  L++
Sbjct: 229 -----------AKNSLAFDLG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 697 SNNKLTGEIPDHLAMCCVNLEFLSLSNNS 725
           S N L GEIP    +     +  + +NN 
Sbjct: 276 SFNNLCGEIPQGGNL--QRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  118 bits (297), Expect = 4e-29
 Identities = 73/348 (20%), Positives = 125/348 (35%), Gaps = 62/348 (17%)

Query: 15  EGCLDHERFALLRLKHFFTDPYD----KGATDCCQ--WEGVECSNTT--GRVIGLYLSET 66
           E C   ++ ALL++K    +P         TDCC   W GV C   T   RV  L LS  
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 67  YSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEG-----LSRLNNLKMLDLSGN 121
              + + + +SL      L  L +   N         L G     +++L  L  L ++  
Sbjct: 61  NLPKPYPIPSSLAN-LPYLNFLYIGGIN--------NLVGPIPPAIAKLTQLHYLYITHT 111

Query: 122 AFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGL 181
             +  +   L+++ +L +L  S N L G++    + SL +L  +   GN+I    +    
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRIS-GAIPDSY 169

Query: 182 SKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLD 241
                L                        + +S N +    +P     L+    L  +D
Sbjct: 170 GSFSKL---------------------FTSMTISRNRLTG-KIPPTFANLN----LAFVD 203

Query: 242 LRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEV 301
           L  N+             +   +HL+ N L   +   +     NL  LD+ +N I    +
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYG-TL 260

Query: 302 SRGYRGLRKLKSLDLSGVGIRDGNKL---LQSMGSFPSLNTLHLESNN 346
            +G   L+ L SL++S       N L   +   G+    +     +N 
Sbjct: 261 PQGLTQLKFLHSLNVS------FNNLCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 99.1 bits (248), Expect = 1e-22
 Identities = 66/384 (17%), Positives = 113/384 (29%), Gaps = 127/384 (33%)

Query: 330 SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLK 389
           +      +N L L   N          L N   L +L +   + ++      G I P++ 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-NLV-----GPIPPAIA 98

Query: 390 NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG-- 447
            L+                    L +L                       + + ++SG  
Sbjct: 99  KLT-------------------QLHYLY----------------------ITHTNVSGAI 117

Query: 448 -STLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 506
              L              +  L  L    N L G+LP  +++  +L  +    N+++G+I
Sbjct: 118 PDFLSQ------------IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 507 SSSPLVHLTS-IEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLT 563
             S     +     + +S N    +IP +                               
Sbjct: 166 PDS-YGSFSKLFTSMTISRNRLTGKIPPTFA----------------------------- 195

Query: 564 PKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 623
               L  + LS N                          + G+       ++   + ++L
Sbjct: 196 -NLNLAFVDLSRN-------------------------MLEGDASVLFG-SDKNTQKIHL 228

Query: 624 VNDSLAGPFRLP-IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIP 682
             +SLA    L  +   K L  LD+ NN   G +P  +   L  L   N+S N L G IP
Sbjct: 229 AKNSLAFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIP 285

Query: 683 SSFGNVIFLQFLDLSNNKLTGEIP 706
              GN+        +NNK     P
Sbjct: 286 QG-GNLQRFDVSAYANNKCLCGSP 308

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  228 bits (583), Expect = 3e-62
 Identities = 75/618 (12%), Positives = 168/618 (27%), Gaps = 83/618 (13%)

Query: 474  DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 533
            + +         L N   +  L ++     G +  + +  LT ++ L    +   +   L
Sbjct: 307  ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRL 365

Query: 534  EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 593
                  +     + K+               +  L  L   +   +    P     +  L
Sbjct: 366  FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 594  KEAELSHIK-MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 652
            K+ ++ ++   I      + +  TKL+ +Y  N           +        +      
Sbjct: 426  KDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQ 479

Query: 653  QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM- 711
              +  +   + L  L    +        +P    ++  LQ L+++ N+            
Sbjct: 480  YENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 712  -------CCVNLEFLSLSNNSLKGHIFSR-IFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 763
                       ++   +  N+L+    S  +  +  L  L    N       ++      
Sbjct: 539  RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVK 596

Query: 764  LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDNNI 822
            L  L L+ N +      +      ++ +    N L+  P       +  +  +D S N I
Sbjct: 597  LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656

Query: 823  SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS 882
                 +    +                     +   +  T+ LSYN +     +     S
Sbjct: 657  GSEGRNISCSMDD-------------------YKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 883  QLSHLNLAHNNLE-------GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-----TT 930
             +S + L++N +                    L  +DL  N L  L            + 
Sbjct: 698  PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757

Query: 931  LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 990
            +  SYN                             F         + Q +   +    D 
Sbjct: 758  MDVSYNC-------------------------FSSFP---TQPLNSSQLKAFGIRHQRDA 789

Query: 991  SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 1050
              N+++   P  I     +  L +  N++          L     LD++ N         
Sbjct: 790  EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYI---LDIADNPNISIDVTS 846

Query: 1051 LVDLNTLAIFIVAYNNLS 1068
            +       ++++ Y+   
Sbjct: 847  VCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  226 bits (578), Expect = 1e-61
 Identities = 88/661 (13%), Positives = 176/661 (26%), Gaps = 133/661 (20%)

Query: 462  LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 521
            L     +  L +     +G +P  +   T L++L    +  T S        L + +   
Sbjct: 319  LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSE 377

Query: 522  LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 581
               +  R+      L    +L + D   +     IN +  + P  +   +SL      ++
Sbjct: 378  ERKHRIRMHYKKMFLDYDQRLNLSDLLQD----AINRNPEMKPIKKDSRISLKDTQIGNL 433

Query: 582  TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 641
            T                     I       ++  TKL+ +Y  N           +    
Sbjct: 434  TN-------------------RITFISKA-IQRLTKLQIIYFANSPFTY-----DNIAVD 468

Query: 642  LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 701
                +        +  +   + L  L    +        +P    ++  LQ L+++ N+ 
Sbjct: 469  WEDANSDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 702  TGEIPDHLAM--------CCVNLEFLSLSNNSLKGHIFSR-IFSLRNLRWLLLEGNHFVG 752
                                  ++   +  N+L+    S  +  +  L  L    N    
Sbjct: 528  ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-- 585

Query: 753  EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDS 811
               ++      L  L L+ N +      +      ++ +    N L+  P       +  
Sbjct: 586  RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 812  LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 871
            +  +D S N I     +    +                     +   +  T+ LSYN + 
Sbjct: 646  MGSVDFSYNKIGSEGRNISCSMDD-------------------YKGINASTVTLSYNEIQ 686

Query: 872  GSIPDWIDGLSQLSHLNLAHNNLE-------GEVPIQLCRLNQLQLLDLSDNNLHGLIPS 924
                +     S +S + L++N +                    L  +DL  N L  L   
Sbjct: 687  KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

Query: 925  CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL 984
                T                                                    L  
Sbjct: 747  FRATT----------------------------------------------------LPY 754

Query: 985  LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH------NNLTGTIPLTFSNLRHIESLDL 1038
            L+ +D+S N      P Q  N ++++   + H      N +    P   +    +  L +
Sbjct: 755  LSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 1039 SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSS--YDGNPFLCGLP 1096
              N +  K+  +L     L I  +A N            +         YD    + G  
Sbjct: 814  GSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870

Query: 1097 L 1097
             
Sbjct: 871  A 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  169 bits (430), Expect = 4e-43
 Identities = 91/728 (12%), Positives = 186/728 (25%), Gaps = 192/728 (26%)

Query: 130 SLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKL--KSL 187
            L     +  L L+    +G +    +  L +L+ L  G +         G  +L     
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 188 GLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLC 247
                  +  +     D    L + D+  + I+       ++ + + S++   D +    
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN---PEMKPIKKDSRISLKDTQIGNL 433

Query: 248 NN---SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 304
            N    I  ++ RL+ L  ++ +++            ++   +       + +N E+S  
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWS 488

Query: 305 YRGLRKLKSLDLSGVGIRDGNKLL----QSMGSFPSLNTLHLESNNFTATLTTTQELHNF 360
              L+ L  ++L           +      +   P L +L++  N   +      +    
Sbjct: 489 --NLKDLTDVELYN------CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW--- 537

Query: 361 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 420
                           L     +  P ++   M    +    +         L  LD   
Sbjct: 538 --------------TRLADDEDT-GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 421 ARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG 480
            ++             + +                            L +L +D N +  
Sbjct: 583 NKV-----------RHLEAFGTNV----------------------KLTDLKLDYNQIEE 609

Query: 481 SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHS 540
                 A T  +  L  S N+L    +      +  +  +  S N               
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG------------ 657

Query: 541 KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH 600
                          I+ S          +++LS N                        
Sbjct: 658 ----------SEGRNISCSMDDYKGINASTVTLSYNE----------------------- 684

Query: 601 IKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEI 660
              I +FP  L    + +  + L                        SNN     IP   
Sbjct: 685 ---IQKFPTELFATGSPISTIIL------------------------SNNLMT-SIPENS 716

Query: 661 GDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC-CVNLEFL 719
                                  ++ N   L  +DL  NKLT  + D         L  +
Sbjct: 717 LKPKD-----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM 758

Query: 720 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 779
            +S N       ++  +   L+   +                          N +  + P
Sbjct: 759 DVSYNCFS-SFPTQPLNSSQLKAFGIRHQ------------------RDAEGNRILRQWP 799

Query: 780 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI-SGSLPSCFYPLSIKQV 838
             +     L  + +  N +   +  +      L ILDI+DN   S  + S    +     
Sbjct: 800 TGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMY 856

Query: 839 HLSKNMLH 846
            L  +   
Sbjct: 857 VLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  164 bits (416), Expect = 2e-41
 Identities = 89/561 (15%), Positives = 171/561 (30%), Gaps = 78/561 (13%)

Query: 68  SGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEG--LSRLNNLKMLDLSGNAFNN 125
            G+ W   +          +    WN            G  L     +  L L+G     
Sbjct: 282 DGKNWRYYSGTINNTIHSLN----WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 126 NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLK 185
            V  ++ +L+ L+ L    +    S  +   + L   +  +   ++I        L   +
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT-PDMSEERKHRIRMHYKKMFLDYDQ 396

Query: 186 SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNL-----VVPQGLERLSRLSKL--- 237
            L LS           E         + +   +I NL      + + ++RL++L  +   
Sbjct: 397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFA 456

Query: 238 -------------KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLS 284
                        +  +        +   S + L  LT + L +      +       L 
Sbjct: 457 NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLP 515

Query: 285 NLEELDINDNEIDNVEVSRGYR--------GLRKLKSLDLSGVGIRDGNKLLQ-----SM 331
            L+ L+I  N   +    +              K++   +        N L +     S+
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG------YNNLEEFPASASL 569

Query: 332 GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 391
                L  L    N     +   +       L  L LD + +   + +   +    ++ L
Sbjct: 570 QKMVKLGLLDCVHNK----VRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624

Query: 392 SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 451
             S  ++  + +         +  +D  + +I    S  + I  SM   K ++ S  TL 
Sbjct: 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI---GSEGRNISCSMDDYKGINASTVTLS 681

Query: 452 TNS-SRILDQGLCPLAHLQELYIDNNDLR-------GSLPWCLANTTSLRILDVSFNQLT 503
            N   +   +     + +  + + NN +                NT  L  +D+ FN+LT
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 504 GSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIF------DAKNNEINGEI 556
                     L  +  + +S N F   P       N S+LK F      DA+ N I  + 
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQ---PLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 557 NES-HSLTPKFQLKSLSLSSN 576
                +      L  L + SN
Sbjct: 799 PTGITTCP---SLIQLQIGSN 816

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  157 bits (399), Expect = 2e-39
 Identities = 58/446 (13%), Positives = 123/446 (27%), Gaps = 80/446 (17%)

Query: 645  LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 704
             +   + +     V++ +    +   +++     G +P + G +  L+ L    +  T  
Sbjct: 304  FNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV- 361

Query: 705  IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 764
                     +  +      + ++ H                          Q L+    L
Sbjct: 362  SGRLFGDEELTPDMSEERKHRIRMHYKKMFLD-----------------YDQRLNLSDLL 404

Query: 765  KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 824
            +     N  +         +LK  Q I    N +   I     RL  LQI+  +++  + 
Sbjct: 405  QDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTY 462

Query: 825  SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL 884
                                                   +  Y     +       L  L
Sbjct: 463  DNI-----------------------------AVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 885  SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP 944
            + + L +     ++P  L  L +LQ L+++ N          D T L +  +        
Sbjct: 494  TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK---- 549

Query: 945  FKTSFSISGPQGSVEKKILEIFEFTT---KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP 1001
                              ++IF       +    +   + +  L  LD   NK+      
Sbjct: 550  ------------------IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLE 589

Query: 1002 QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR--QLVDLNTLAI 1059
              G   ++  L L +N +        +    +E L  S+NKL   IP       +  +  
Sbjct: 590  AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGS 648

Query: 1060 FIVAYNNLSGKIPEWTAQFATFNKSS 1085
               +YN +  +    +     +   +
Sbjct: 649  VDFSYNKIGSEGRNISCSMDDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  125 bits (315), Expect = 3e-29
 Identities = 47/397 (11%), Positives = 110/397 (27%), Gaps = 80/397 (20%)

Query: 694  LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 753
            + +   +    I D+ A+  +  E L   N        +      N      E + +  +
Sbjct: 257  VPIQLKETAEYIKDYKALKAI-WEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQ 314

Query: 754  IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 813
                L     + GL L      G++P                            +L  L+
Sbjct: 315  PGVDLDNNGRVTGLSLAGFGAKGRVPD------------------------AIGQLTELK 350

Query: 814  ILDISDNNISGSLPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 872
            +L    ++ + S        L+       K+ +    K+        L   DL  + +N 
Sbjct: 351  VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

Query: 873  SIPDWIDGLSQLSHLNLAHNNLEG------EVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 926
            +    +  + + S ++L    +         +   + RL +LQ++  +++       +  
Sbjct: 411  NPE--MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD 468

Query: 927  DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 986
                  +      + +  +                                    L  L 
Sbjct: 469  WEDANSDYAKQYENEELSWSN----------------------------------LKDLT 494

Query: 987  GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG---------TIPLTFSNLRHIESLD 1037
             ++L     +  +P  + +L  +Q+LN++ N              +         I+   
Sbjct: 495  DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 1038 LSYNKLSG-KIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073
            + YN L        L  +  L +    +N +   +  
Sbjct: 555  MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA 590

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 4e-09
 Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 18/189 (9%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEGLE---GLSRLNNLKMLDLSGNAFNNNVLS-SL 131
             LF     + ++ LS N +    EN              L  +DL  N   +       
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749

Query: 132 ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKG--------LSK 183
             L  L ++ +S N    S    +  +   L+   I   +  +                 
Sbjct: 750 TTLPYLSNMDVSYNCFS-SFP-TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 184 LKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLR 243
           L  L +     +   +         L +LD++ N   ++ V      +     +   D  
Sbjct: 808 LIQLQIGSNDIRKVDE----KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

Query: 244 GNLCNNSIL 252
            ++     L
Sbjct: 864 QDIRGCDAL 872

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  215 bits (550), Expect = 1e-59
 Identities = 113/578 (19%), Positives = 197/578 (34%), Gaps = 55/578 (9%)

Query: 362 NLEYLTLDDSSLHISLLQSI-GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 420
            +  +T          L  +   I  S KN+ +S   +  + S   F +F  L+ LD+  
Sbjct: 10  VVPNITYQCMDQK---LSKVPDDIPSSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLS- 64

Query: 421 ARIALNTSFLQIIGES---MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND 477
                      I  ++   +  L  L L+G+ +              L  L+ L      
Sbjct: 65  -----RCEIETIEDKAWHGLHHLSNLILTGNPI----QSFSPGSFSGLTSLENLVAVETK 115

Query: 478 LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEP 535
           L     + +    +L+ L+V+ N +      +   +LT++  + LS N+ +      L+ 
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 536 LFN-HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELK 594
           L          D   N I+   +++       +L  L+L  N+  S      L +   L 
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQG---IKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 595 EAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQG 654
              L   +   E    + E +       +                  +    ++  N   
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDV-----------------TIDEFRLTYTNDFS 275

Query: 655 HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV 714
              V+    L ++   +++  ++              Q L +   +L       L     
Sbjct: 276 DDIVKFHC-LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP---- 328

Query: 715 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH--FVGEIPQSLSKCSSLKGLYLNNN 772
            L+ L+L+ N  KG I  +  +L +L +L L  N   F G    S    +SL+ L L+ N
Sbjct: 329 FLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 773 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFY 831
                +      L+ LQH+    + L+       F  L+ L  LDIS  N        F 
Sbjct: 387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 832 PL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 890
            L S+  + ++ N          F N ++L  LDLS   L        D L +L  LN++
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 891 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928
           HNNL         +L  L  LD S N +          
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  205 bits (524), Expect = 3e-56
 Identities = 106/621 (17%), Positives = 198/621 (31%), Gaps = 112/621 (18%)

Query: 466  AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
            +  + + +  N L+    +  +N + L+ LD+S  ++      +    L  +  L L+ N
Sbjct: 32   SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGN 90

Query: 526  HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 585
              +   S       + L+   A   ++    +    +     LK L+++ N+        
Sbjct: 91   PIQS-FSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNF-------- 139

Query: 586  FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 645
                        +   K+   F N                                L  +
Sbjct: 140  ------------IHSCKLPAYFSNL-----------------------------TNLVHV 158

Query: 646  DVSNNNFQGHIPVEIG---DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 702
            D+S N  Q     ++    +     +  ++S+N +D     +F  +  L  L L  N  +
Sbjct: 159  DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNS 217

Query: 703  GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR--------NLRWLLLEGNHFVGEI 754
              I          L    L     K      IF            +    L   +   + 
Sbjct: 218  SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277

Query: 755  PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 814
                   +++  + L   ++       +      Q + + +  L+         L  L+ 
Sbjct: 278  IVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKS 332

Query: 815  LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN--CSSLVTLDLSYNYLNG 872
            L ++ N  S S      P S+  + LS+N L       ++ +   +SL  LDLS+N    
Sbjct: 333  LTLTMNKGSISFKKVALP-SLSYLDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAI- 389

Query: 873  SIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSCFDN--- 928
             +     GL +L HL+  H+ L+          L +L  LD+S  N        F     
Sbjct: 390  IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 929  -TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 987
              TL  + N+                           +F                + L  
Sbjct: 450  LNTLKMAGNSFKDNTLS-------------------NVF-------------ANTTNLTF 477

Query: 988  LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
            LDLS  +L          L R+Q LN+SHNNL       ++ L  + +LD S+N++    
Sbjct: 478  LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 1048 PRQLVDLNTLAIFIVAYNNLS 1068
                    +LA F +  N+++
Sbjct: 538  GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  201 bits (514), Expect = 6e-55
 Identities = 101/596 (16%), Positives = 182/596 (30%), Gaps = 68/596 (11%)

Query: 204 DSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTS 263
           D  ++ + +D+S N +  L         S  S+L+ LDL           +   L  L++
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84

Query: 264 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 323
           L L+ N +Q S     F  L++LE L   + ++ ++E S     L  LK L+++   I  
Sbjct: 85  LILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLE-SFPIGQLITLKKLNVAHNFIHS 142

Query: 324 GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGS 383
              L     +  +L  + L  N          +         L+LD S   I  +Q    
Sbjct: 143 CK-LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 384 IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 443
               L  L++ G   +  +      +   L    +         +        M  L  +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 444 SLSGSTLGTNSSRILDQG-LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQL 502
           ++    L   +    D      LA++  + +    +       +      + L +   QL
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQL 319

Query: 503 TGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSL 562
                  P + L  ++ L L+ N   I            L   D   N ++     S+S 
Sbjct: 320 K----QFPTLDLPFLKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 563 TPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLY 622
                L+ L LS N                                           F+ 
Sbjct: 373 LGTNSLRHLDLSFN--------------------------GAIIMSAN---------FMG 397

Query: 623 LVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIP 682
           L                  L+ LD  ++  +          L  L+Y +IS         
Sbjct: 398 LEE----------------LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 683 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 742
             F  +  L  L ++ N        ++     NL FL LS   L+   +    +L  L+ 
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

Query: 743 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 798
           L +  N+ +       ++  SL  L  + N +           K L    +  N +
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  193 bits (493), Expect = 3e-52
 Identities = 108/626 (17%), Positives = 194/626 (30%), Gaps = 103/626 (16%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
               +++DLS+N +            S  + L+ LDLS          +   L  L +L 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGTGFKGTFD 199
           L+ N ++ S        L  LE L     K+          L  LK L ++         
Sbjct: 87  LTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

Query: 200 VREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILS---SVA 256
              F +  NL  +D+S N I  + V      L  L +  +++L  ++  N I        
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITV----NDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 257 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDL 316
           +   L  L L  N    +I      +L+ L    +   E         ++  R L+  + 
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE---------FKDERNLEIFEP 252

Query: 317 SGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 376
           S             M     +                  + H   N+  ++L  + + I 
Sbjct: 253 S------------IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL--AGVSIK 298

Query: 377 LLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGES 436
            L+         ++LS+  C+    L          L+ L +   + +++   +     +
Sbjct: 299 YLED-VPKHFKWQSLSIIRCQ----LKQFPTLDLPFLKSLTLTMNKGSISFKKV-----A 348

Query: 437 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILD 496
           +PSL YL LS + L  +              L+ L +  N     +         L+ LD
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTN--SLRHLDLSFNGAI-IMSANFMGLEELQHLD 405

Query: 497 VSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEI 556
              + L      S  + L  +  L +S  + +                           I
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK---------------------------I 438

Query: 557 NESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNT 616
           +          L +L ++ N                                + +  N T
Sbjct: 439 DFDGIFLGLTSLNTLKMAGN-------------------------SFKDNTLSNVFANTT 473

Query: 617 KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 676
            L FL L    L         +  RL+ L++S+NN    +     + L SL   + S N 
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNR 532

Query: 677 LDGSIPSSFGNVIFLQFLDLSNNKLT 702
           ++ S          L F +L+NN + 
Sbjct: 533 IETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  186 bits (475), Expect = 6e-50
 Identities = 80/445 (17%), Positives = 145/445 (32%), Gaps = 34/445 (7%)

Query: 645  LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 704
                +      +P    DI  S    ++S N L      SF N   LQ+LDLS  ++   
Sbjct: 16   YQCMDQKLS-KVP---DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 705  IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 764
                      +L  L L+ N ++         L +L  L+             + +  +L
Sbjct: 72   EDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 765  KGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL----DSLQILDISD 819
            K L + +N +   K+P +  NL  L H+ +  N+++     +   L         LD+S 
Sbjct: 131  KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 820  NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI----- 874
            N I       F  + + ++ L  N     + +    N + L    L              
Sbjct: 191  NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 875  -PDWIDGLSQLS--HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 931
             P  ++GL  ++     L + N   +  ++   L  +  + L+  ++  L          
Sbjct: 251  EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ 310

Query: 932  HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 991
              S         P                  L+    T    + +++   L  L+ LDLS
Sbjct: 311  SLSIIRCQLKQFPTLDLPF------------LKSLTLTMNKGSISFKKVALPSLSYLDLS 358

Query: 992  CNKL--VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 1049
             N L   G           ++ L+LS N     +   F  L  ++ LD  ++ L      
Sbjct: 359  RNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 1050 Q-LVDLNTLAIFIVAYNNLSGKIPE 1073
               + L  L    ++Y N       
Sbjct: 418  SAFLSLEKLLYLDISYTNTKIDFDG 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  182 bits (465), Expect = 1e-48
 Identities = 108/569 (18%), Positives = 207/569 (36%), Gaps = 54/569 (9%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           L +  F+ F +L+ LDLS   I    E    +    L++L  L L+GN   +    S + 
Sbjct: 47  LKSYSFSNFSELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102

Query: 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSK---GLSKLKSLGLS 190
           L+SL +L   + +L  S++   +  L  L++L++  N I    +      L+ L  + LS
Sbjct: 103 LTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161

Query: 191 GTGFKGTFDVREFDSFNNL----EVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNL 246
               +    V +             LDMS N ID +      ++  +  KL +L LRGN 
Sbjct: 162 YNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQ-----DQAFQGIKLHELTLRGNF 215

Query: 247 CNNSILSSVAR-LSSLTSLHLSHNILQG-----SIDAKEFDSLSNLEELDINDNEIDNVE 300
            +++I+ +  + L+ L    L     +        +    + L ++   +      ++  
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275

Query: 301 VSRG-YRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHN 359
                +  L  + ++ L+GV I+     L+ +       +L +                +
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKY----LEDVPKHFKWQSLSIIRCQLK-----QFPTLD 326

Query: 360 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP-HFKSLEHLDM 418
              L+ LTL  +    S+     +  PSL  L +S   ++             SL HLD+
Sbjct: 327 LPFLKSLTL--TMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 419 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 478
            F    + ++        +  L++L    STL   +          L  L  L I   + 
Sbjct: 384 SFNGAIIMSANFM----GLEELQHLDFQHSTLKRVTEFSA---FLSLEKLLYLDISYTNT 436

Query: 479 RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFN 538
           +          TSL  L ++ N    +  S+   + T++  L LS       +S      
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDT 495

Query: 539 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 598
             +L++ +  +N +    +        + L +L  S N     +     +    L    L
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSH--YNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNL 552

Query: 599 SH--IKMI---GEFPNWLLENNTKLEFLY 622
           ++  +  I    +F  W+ E    L  + 
Sbjct: 553 TNNSVACICEHQKFLQWVKEQKQFLVNVE 581

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  169 bits (430), Expect = 4e-44
 Identities = 94/469 (20%), Positives = 150/469 (31%), Gaps = 39/469 (8%)

Query: 72  WYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAF---NNNVL 128
             L +        L+ L+++ N I  C        L+   NL  +DLS N       N L
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT---NLVHVDLSYNYIQTITVNDL 173

Query: 129 SSLARLS-SLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS---KGLSKL 184
             L        SL +S N ++  I  +    ++ L EL + GN     ++    + L+ L
Sbjct: 174 QFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 185 KSLGLSGTGFKG-----TFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKK 239
               L    FK       F+    +   ++ + +      ++            L+ +  
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSA 289

Query: 240 LDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV 299
           + L G   +   L  V +     SL +        +       L  L+ L +  N+    
Sbjct: 290 MSLAGV--SIKYLEDVPKHFKWQSLSIIRC----QLKQFPTLDLPFLKSLTLTMNKGSIS 343

Query: 300 EVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHN 359
                   L  L  LDLS   +        S     SL  L L  N        +     
Sbjct: 344 FKK---VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI---IMSANFMG 397

Query: 360 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 419
              L++L    S+L      S       L  L +S         G  F    SL  L M 
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMA 456

Query: 420 FARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR 479
                   + L  +  +  +L +L LS   L   S  + D     L  LQ L + +N+L 
Sbjct: 457 GNS--FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT----LHRLQLLNMSHNNLL 510

Query: 480 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 528
                      SL  LD SFN++  +          S+    L+NN   
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  167 bits (426), Expect = 1e-43
 Identities = 93/496 (18%), Positives = 174/496 (35%), Gaps = 44/496 (8%)

Query: 72  WYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNN-NVLSS 130
              +   F+    LE+L      +A          + +L  LK L+++ N  ++  + + 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 131 LARLSSLRSLYLSDNRLEGSIDVKELDSLRDL----EELDIGGNKIDKF--MVSKGLSKL 184
            + L++L  + LS N ++ +I V +L  LR+       LD+  N ID       +G+  L
Sbjct: 149 FSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-L 206

Query: 185 KSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLER--LSRLSKLKKLDL 242
             L L G             +   L V  +   E  +    +  E   +  L  +   + 
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 243 RGNLCNNSILSSVA--RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVE 300
           R    N+     V    L++++++ L+   ++     ++       + L I   ++    
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 301 VSRGYRGLRKLKSLDLSGVGIRDGNKLLQ--SMGSFPSLNTLHLESNNFTATLTTTQELH 358
                  L  LKSL L+       NK        + PSL+ L L  N  + +   +    
Sbjct: 324 TL----DLPFLKSLTLT------MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 359 NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 418
              +L +L L  S     ++ +       L++L      +  V     F   + L +LD+
Sbjct: 374 GTNSLRHLDL--SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 419 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 478
            +            I   + SL  L ++G++        L        +L  L +    L
Sbjct: 432 SYTNT---KIDFDGIFLGLTSLNTLKMAGNSF---KDNTLSNVFANTTNLTFLDLSKCQL 485

Query: 479 RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLF 537
                        L++L++S N L   + SS    L S+  L  S N        L+   
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 538 NHSKLKIFDAKNNEIN 553
               L  F+  NN + 
Sbjct: 545 --KSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  167 bits (425), Expect = 2e-43
 Identities = 79/491 (16%), Positives = 142/491 (28%), Gaps = 64/491 (13%)

Query: 604  IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 663
            +    ++   N ++L++L L    +        H    L  L ++ N  Q          
Sbjct: 44   LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSG 102

Query: 664  LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723
            L SL         L        G +I L+ L++++N +             NL  + LS 
Sbjct: 103  LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 724  NSLKGHIFSRIFSLRNLRWLLLEGNH---FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 780
            N ++    + +  LR    + L  +     +  I     +   L  L L  N  S  I +
Sbjct: 163  NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

Query: 781  W-LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ--------ILDISDNNISGSLPSCFY 831
              L NL GL    +     +    +E      ++           ++  N        F+
Sbjct: 223  TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 832  PLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 890
             L+ +  + L+   +   L++          +L +    L    P     L  L  L L 
Sbjct: 283  CLANVSAMSLAGVSIK-YLEDVPK--HFKWQSLSIIRCQLK-QFPTL--DLPFLKSLTLT 336

Query: 891  HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN------TTLHESYNNNSSPDKP 944
             N     +  +   L  L  LDLS N L       + +        L  S+N        
Sbjct: 337  MNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394

Query: 945  FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ-I 1003
            F                                    L  L  LD   + L         
Sbjct: 395  FMG----------------------------------LEELQHLDFQHSTLKRVTEFSAF 420

Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LVDLNTLAIFIV 1062
             +L ++  L++S+ N        F  L  + +L ++ N            +   L    +
Sbjct: 421  LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 1063 AYNNLSGKIPE 1073
            +   L      
Sbjct: 481  SKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  136 bits (345), Expect = 2e-33
 Identities = 68/396 (17%), Positives = 121/396 (30%), Gaps = 81/396 (20%)

Query: 679  GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 738
            GS+      V  +      + KL+ ++PD +     + + + LS N LK        +  
Sbjct: 2    GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFS 56

Query: 739  NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 798
             L+WL L          ++      L  L L  N +    P     L  L+++V  +  L
Sbjct: 57   ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 799  EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS 858
                     +L +L+ L+++ N I                               F N +
Sbjct: 117  ASLESFPIGQLITLKKLNVAHNFIHSCKLP-----------------------AYFSNLT 153

Query: 859  SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 918
            +LV +DLSYNY+     + +  L +   +                       LD+S N +
Sbjct: 154  NLVHVDLSYNYIQTITVNDLQFLRENPQV--------------------NLSLDMSLNPI 193

Query: 919  HGLIPSCFDNTTLHE---SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 975
              +    F    LHE     N NSS                        I +   +N+A 
Sbjct: 194  DFIQDQAFQGIKLHELTLRGNFNSS-----------------------NIMKTCLQNLA- 229

Query: 976  AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT--LNLSHNNLTGTIPLTFSNLRHI 1033
                 V  L+ G       L    P  +  L  +      L++ N      + F  L ++
Sbjct: 230  --GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287

Query: 1034 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 1069
             ++ L+   +       +          +    L  
Sbjct: 288  SAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.8 bits (231), Expect = 2e-19
 Identities = 51/260 (19%), Positives = 78/260 (30%), Gaps = 49/260 (18%)

Query: 824  GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 883
            GSL  C   +           L  ++ +      SS   +DLS+N L           S+
Sbjct: 2    GSLNPCIEVVPNITYQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 884  LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNN-N 938
            L  L+L+   +E         L+ L  L L+ N +    P  F        L        
Sbjct: 58   LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 939  SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG- 997
            S    P                                     L  L  L+++ N +   
Sbjct: 118  SLESFPIGQ----------------------------------LITLKKLNVAHNFIHSC 143

Query: 998  HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRH----IESLDLSYNKLSGKIPRQLVD 1053
             +P    NLT +  ++LS+N +          LR       SLD+S N +   I  Q   
Sbjct: 144  KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ 202

Query: 1054 LNTLAIFIVAYNNLSGKIPE 1073
               L    +  N  S  I +
Sbjct: 203  GIKLHELTLRGNFNSSNIMK 222

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.9 bits (226), Expect = 8e-19
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 14/198 (7%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSS 136
           + F   ++L+ LD   + +    E      L     L  LD+S      +       L+S
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE---KLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 137 LRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGTGF 194
           L +L ++ N  + +       +  +L  LD+   ++++        L +L+ L +S    
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 195 KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN----LCNNS 250
               D   ++   +L  LD S N I+       L        L   +L  N    +C + 
Sbjct: 510 LF-LDSSHYNQLYSLSTLDCSFNRIETS--KGIL--QHFPKSLAFFNLTNNSVACICEHQ 564

Query: 251 ILSSVARLSSLTSLHLSH 268
                 +      +++  
Sbjct: 565 KFLQWVKEQKQFLVNVEQ 582

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  176 bits (448), Expect = 9e-47
 Identities = 109/553 (19%), Positives = 187/553 (33%), Gaps = 62/553 (11%)

Query: 383 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSL 440
           ++  S KNL +S   +  + S   F  F  L+ LD+    I    + ++     +S+  L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAY-----QSLSHL 78

Query: 441 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 500
             L L+G+ +      +       L+ LQ+L     +L     + + +  +L+ L+V+ N
Sbjct: 79  STLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 501 QLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFNHSKLKIF-DAKNNEINGEIN 557
            +          +LT++E L LS+N  +      L  L     L +  D   N +N    
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-- 192

Query: 558 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELS-----HIKMIGEFPNWLL 612
                  + +L  L+L +N+         +     L+   L      +   + +F    L
Sbjct: 193 -QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 613 ENNTKLEFLYL---VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 669
           E    L          D          +    +    + +   +             L  
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 670 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL--K 727
            N            S      L+ L  ++NK      +   +   +LEFL LS N L  K
Sbjct: 312 VNCKFGQFPTLKLKS------LKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFK 362

Query: 728 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 787
           G      F   +L++L L  N  +  +  +      L+ L   ++NL       +     
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV----- 416

Query: 788 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH 846
                             F  L +L  LDIS  +   +    F  L S++ + ++ N   
Sbjct: 417 ------------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 847 GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN 906
                  F    +L  LDLS   L    P   + LS L  LN+A N L+        RL 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 907 QLQLLDLSDNNLH 919
            LQ + L  N   
Sbjct: 519 SLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  170 bits (432), Expect = 1e-44
 Identities = 104/522 (19%), Positives = 185/522 (35%), Gaps = 33/522 (6%)

Query: 111 NNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGN 170
            + K LDLS N   +    S      L+ L LS   ++ +I+     SL  L  L + GN
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 171 KIDKFMVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL 228
            I    +    GLS L+ L    T    + +         L+ L+++ N I +  +P+  
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEY- 144

Query: 229 ERLSRLSKLKKLDLRGN----LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLS 284
              S L+ L+ LDL  N    +    +           SL LS N +   I    F  + 
Sbjct: 145 --FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI- 200

Query: 285 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLE 343
            L +L + +N      +    +GL  L+   L     R+   L +    +   L  L +E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 344 SNNFTA-TLTTTQELHNFTNLEYLTLDD-SSLHISLLQSIGSIFPSLKNLSMSGCEVNGV 401
                         +  F  L  ++     S+ I  ++   S     ++L +  C+    
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQF 319

Query: 402 LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 461
                    KSL+ L     +     S +      +PSL++L LS + L  +      Q 
Sbjct: 320 ----PTLKLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGL--SFKGCCSQS 368

Query: 462 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 521
                 L+ L +  N +  ++         L  LD   + L      S  + L ++  L 
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 522 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 581
           +S+ H R+          S L++     N    E       T    L  L LS    + +
Sbjct: 428 ISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 582 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 623
           + P        L+   ++  + +   P+ + +  T L+ ++L
Sbjct: 486 S-PTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  166 bits (422), Expect = 2e-43
 Identities = 97/486 (19%), Positives = 178/486 (36%), Gaps = 40/486 (8%)

Query: 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
              + L +  N LR    +   +   L++LD+S  ++  +I       L+ +  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 526 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 585
             +  ++L      S L+   A    +    N    +     LK L+++ N   S   P+
Sbjct: 87  PIQS-LALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPE 143

Query: 586 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF----LYLVNDSL----AGPFRLPIH 637
           +  +   L+  +LS  K I       L    ++      L L  + +     G F+    
Sbjct: 144 YFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-- 200

Query: 638 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI------PSSFGNVIFL 691
              RL  L + NN    ++       L  L    + +              S+   +  L
Sbjct: 201 ---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 692 QF--LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG-HIFSRIFSLRNLRWLLLEGN 748
                 L+      +    L  C  N+   SL + +++    FS  F  ++L  +  +  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 749 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEF 806
            F         K  SLK L   +N           +L  L+ + + +N L   G      
Sbjct: 318 QF------PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 807 CRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 865
               SL+ LD+S N +  ++ S F  L  ++ +    + L    +   F +  +L+ LD+
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 866 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPS 924
           S+ +   +     +GLS L  L +A N+ +          L  L  LDLS   L  L P+
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 925 CFDNTT 930
            F++ +
Sbjct: 489 AFNSLS 494

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  166 bits (421), Expect = 3e-43
 Identities = 97/576 (16%), Positives = 194/576 (33%), Gaps = 77/576 (13%)

Query: 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 265
             + + LD+S N + +L             +L+ LDL           +   LS L++L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 266 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 325
           L+ N +Q S+    F  LS+L++L   +  + ++E +     L+ LK L+++   I+   
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFK 140

Query: 326 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY--LTLDDSSLHISLLQSIGS 383
            L +   +  +L  L L SN   +      +L     +    L+LD S   ++ +Q    
Sbjct: 141 -LPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 384 IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 443
               L  L++     +  +          LE   +         +  +    ++  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 444 SLSGSTLGTN--SSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILDVSFN 500
           ++    L         +      L ++    + +  +     +        L +++  F 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 501 QLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESH 560
           Q        P + L S++ L  ++N      +     +   L+  D   N ++ +   S 
Sbjct: 318 QF-------PTLKLKSLKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 561 SLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF 620
           S      LK L LS N   +++                        F         +LE 
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMS----------------------SNFL-----GLEQLEH 400

Query: 621 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS 680
           L                           ++N +      +   L +L+Y +IS      +
Sbjct: 401 LDF------------------------QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 681 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRN 739
               F  +  L+ L ++ N         +     NL FL LS   L+  +    F+ L +
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSS 495

Query: 740 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS 775
           L+ L +  N           + +SL+ ++L+ N   
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  164 bits (418), Expect = 7e-43
 Identities = 117/581 (20%), Positives = 207/581 (35%), Gaps = 83/581 (14%)

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
            S  +L LS N L+  + +  F S   L+ LD++  EI  +E    Y+ L  L +L L+G
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTG 85

Query: 319 VGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH 374
                 N +   ++G+F    SL  L     N  +       + +   L+ L +  + + 
Sbjct: 86  ------NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQ 137

Query: 375 ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG 434
              L    S   +L++L +S  ++  +         + L  + +    + L+ + +  I 
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCT----DLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 435 E---SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 491
                   L  L+L  +    N   ++   +  LA L+   +   + R            
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLN---VMKTCIQGLAGLEVHRLVLGEFR------------ 238

Query: 492 LRILDVSFNQLTGSISSSPLVHLTS--IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 549
                 +   L      S L  L +  IEE RL+   + +   ++     + +  F   +
Sbjct: 239 ------NEGNLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 550 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 609
             I          +  F  + L L +         K       LK    +  K    F  
Sbjct: 292 VTIE----RVKDFSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGNAFS- 342

Query: 610 WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 669
               +   LEFL L              S   L F    + +  G           SL Y
Sbjct: 343 --EVDLPSLEFLDL--------------SRNGLSFKGCCSQSDFG---------TTSLKY 377

Query: 670 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH 729
            ++S N +  ++ S+F  +  L+ LD  ++ L       + +   NL +L +S+   +  
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-V 435

Query: 730 IFSRIFS-LRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 787
            F+ IF+ L +L  L + GN F         ++  +L  L L+   L    P    +L  
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 788 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 828
           LQ + M  N L+      F RL SLQ + +  N    S P 
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  159 bits (405), Expect = 3e-41
 Identities = 113/602 (18%), Positives = 190/602 (31%), Gaps = 121/602 (20%)

Query: 490  TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 549
             S + LD+SFN L   + S        ++ L LS    +   ++E          +    
Sbjct: 28   FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIED-------GAYQ--- 73

Query: 550  NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 609
                       SL+    L +L L+ N                           I     
Sbjct: 74   -----------SLS---HLSTLILTGNP--------------------------IQSLAL 93

Query: 610  WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 669
                  + L+ L  V  +LA     PI   K L+ L+V++N  Q     E    L +L +
Sbjct: 94   GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 670  FNISMNALDGSIPSSFGNVIFLQF----LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 725
             ++S N +     +    +  +      LDLS N +    P       + L  L+L NN 
Sbjct: 154  LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--IRLHKLTLRNNF 211

Query: 726  LKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL--------YLNNNNLSG 776
               ++       L  L    L    F  E        S+L+GL         L   +   
Sbjct: 212  DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 777  -KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR-LDSLQILDISDNNISGSLPSCFYPLS 834
              I      L  +    +    +E      +      L++++                 S
Sbjct: 272  DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-----S 326

Query: 835  IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN--GSIPDWIDGLSQLSHLNLAHN 892
            +K++  + N         +  +  SL  LDLS N L+  G       G + L +L+L+ N
Sbjct: 327  LKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 893  NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFDN----TTLHESYNNNSSPDKPFKT 947
             +   +      L QL+ LD   +NL  +   S F +      L  S+ +          
Sbjct: 384  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---- 438

Query: 948  SFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNL 1006
                             IF               LS L  L ++ N    +  P I   L
Sbjct: 439  ----------------GIFN-------------GLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 1007 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 1066
              +  L+LS   L    P  F++L  ++ L+++ N+L          L +L    +  N 
Sbjct: 470  RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

Query: 1067 LS 1068
              
Sbjct: 530  WD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  154 bits (392), Expect = 1e-39
 Identities = 93/492 (18%), Positives = 170/492 (34%), Gaps = 45/492 (9%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           +    +     L +L L+ N I   A        S L++L+ L        +     +  
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLK----SL 187
           L +L+ L ++ N ++     +   +L +LE LD+  NKI     +  + L ++     SL
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 188 GLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLC 247
            LS            F     L  L +  N     V+   ++ L+ L   + +       
Sbjct: 183 DLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 248 NNSILSSVARLSSLTSLHLSHNILQ-----GSIDAKEFDSLSNLEELDINDNEIDNVEVS 302
            N      + L  L +L +    L             F+ L+N+    +    I+ V+  
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 303 RGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTN 362
               G + L+ ++                    SL  L   SN             +  +
Sbjct: 301 SYNFGWQHLELVNCKFGQFPT--------LKLKSLKRLTFTSNK----GGNAFSEVDLPS 348

Query: 363 LEYLTLDDSSLH-ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFA 421
           LE+L L  + L              SLK L +S   V  +     F   + LEHLD + +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHS 406

Query: 422 RIA--LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR 479
            +      S       S+ +L YL +S +      + I +     L+ L+ L +  N  +
Sbjct: 407 NLKQMSEFSVFL----SLRNLIYLDISHTHTRVAFNGIFNG----LSSLEVLKMAGNSFQ 458

Query: 480 GSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFN 538
            +          +L  LD+S  QL   +S +    L+S++ L +++N  +  V       
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDR 516

Query: 539 HSKLKIFDAKNN 550
            + L+      N
Sbjct: 517 LTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  154 bits (390), Expect = 3e-39
 Identities = 90/469 (19%), Positives = 163/469 (34%), Gaps = 59/469 (12%)

Query: 646  DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 705
                 NF   IP    ++  S    ++S N L      SF +   LQ LDLS  ++   I
Sbjct: 13   QCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI 67

Query: 706  PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSL 764
             D       +L  L L+ N ++  +    FS L +L+ L+    +        +    +L
Sbjct: 68   EDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 765  KGLYLNNNNL-SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI----LDISD 819
            K L + +N + S K+P +  NL  L+H+ +  N ++     +   L  + +    LD+S 
Sbjct: 127  KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 820  NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI----- 874
            N ++   P  F  + + ++ L  N     + +      + L    L              
Sbjct: 187  NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 875  -PDWIDGLSQLS--HLNLAHNNLEGEVPIQL-CRLNQLQLLDLSDNNLHGLIPSCFDNTT 930
                ++GL  L+     LA+ +   +  I L   L  +    L    +  +    ++   
Sbjct: 247  DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 931  LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 990
             H    N      P             ++ K L+   FT+     A+    L  L  LDL
Sbjct: 307  QHLELVNCKFGQFPT------------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354

Query: 991  SCNKLVG-------------------------HIPPQIGNLTRIQTLNLSHNNLTGTIPL 1025
            S N L                            +      L +++ L+  H+NL      
Sbjct: 355  SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 1026 -TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073
              F +LR++  LD+S+             L++L +  +A N+       
Sbjct: 415  SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  112 bits (282), Expect = 9e-26
 Identities = 62/295 (21%), Positives = 100/295 (33%), Gaps = 32/295 (10%)

Query: 61  LYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSG 120
                 Y   Y      LF     + S  L    I      E ++  S     + L+L  
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI------ERVKDFSYNFGWQHLELVN 313

Query: 121 NAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF----M 176
             F      +L +L SL+ L  + N+   +        L  LE LD+  N +        
Sbjct: 314 CKFGQ--FPTL-KLKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 177 VSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSK 236
              G + LK L LS  G         F     LE LD   + +  +     +     L  
Sbjct: 368 SDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSV--FLSLRN 422

Query: 237 LKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEI 296
           L  LD+       +       LSSL  L ++ N  Q +     F  L NL  LD++  ++
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 297 DNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL----LQSMGSFPSLNTLHLESNNF 347
           + +     +  L  L+ L+++       N+L            SL  + L +N +
Sbjct: 483 EQLS-PTAFNSLSSLQVLNMA------SNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
               +FT  + L  LDLS   +   +        + L++L++L+++ N   +       R
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 134 LSSLRSLYLSDNRLEGS 150
           L+SL+ ++L  N  + S
Sbjct: 517 LTSLQKIWLHTNPWDCS 533

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  178 bits (453), Expect = 5e-46
 Identities = 121/678 (17%), Positives = 224/678 (33%), Gaps = 103/678 (15%)

Query: 108 SRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDI 167
             LN  + L LS N       SS   L  L+ L L       +ID +   +L +L  LD+
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 168 GGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQG 227
           G +KI                              F    +L  L +    + + V+  G
Sbjct: 81  GSSKIY-----------------------FLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117

Query: 228 LERLSRLSKLKKLDLRGNLCNNSILSSV-ARLSSLTSLHLSHNILQGSIDAKEFDSLS-- 284
                 L  L +LDL  N   +  L     +L+SL S+  S N +   +   E + L   
Sbjct: 118 Y--FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGK 174

Query: 285 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 344
            L    +  N + +       + +   +++                      L  L +  
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNM---------------------VLEILDVSG 213

Query: 345 NNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSG 404
           N +T  +       NF+N    +   S +    +   G  F ++K+            +G
Sbjct: 214 NGWTVDI-----TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD------QNTFAG 262

Query: 405 QGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCP 464
                  S+ HLD+    +    S    + E++  LK L+L+ + +    ++I D+    
Sbjct: 263 LARS---SVRHLDLSHGFV---FSLNSRVFETLKDLKVLNLAYNKI----NKIADEAFYG 312

Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
           L +LQ L +  N L             +  +D+  N +   I       L  ++ L L +
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRD 371

Query: 525 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 584
           N      +L  +     +       N++      +           + LS N  +++   
Sbjct: 372 N------ALTTIHFIPSIPDIFLSGNKLVTLPKIN------LTANLIHLSENRLENLDIL 419

Query: 585 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH----- 639
            FL     L+   L+  +      +     N  LE L+L  + L   +   +        
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 640 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 699
             L+ L +++N     +P  +   L +L   +++ N L     +       L+ LD+S N
Sbjct: 480 SHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRN 536

Query: 700 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL- 758
           +L    PD       +L  L +++N            L      L   N  +   P  + 
Sbjct: 537 QLLAPNPDVFV----SLSVLDITHNKFICEC-----ELSTFINWLNHTNVTIAGPPADIY 587

Query: 759 -SKCSSLKGLYLNNNNLS 775
                S  G+ L + +  
Sbjct: 588 CVYPDSFSGVSLFSLSTE 605

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  170 bits (432), Expect = 2e-43
 Identities = 105/625 (16%), Positives = 195/625 (31%), Gaps = 82/625 (13%)

Query: 604  IGEFPNWLLENNTKLEFLYLVNDSLAGPF-RLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 662
            I            +L+ L L +        +    +   LR LD+ ++     +  +   
Sbjct: 36   IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQ 94

Query: 663  ILPSLVYFNISMNALDGSI--PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS 720
             L  L    +    L  ++     F N+  L  LDLS N++             +L+ + 
Sbjct: 95   GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154

Query: 721  LSNNSLKGHIFSRIF---SLRNLRWLLLEGNHFVGEIPQSLSKC-SSLKGLYLNNNNLSG 776
             S+N +   +          + L +  L  N     +     KC +  + + L   ++SG
Sbjct: 155  FSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213

Query: 777  KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--- 833
                   N   +       N +             +       +NI     + F  L   
Sbjct: 214  -------NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266

Query: 834  SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN 893
            S++ + LS   +   L    F     L  L+L+YN +N    +   GL  L  LNL++N 
Sbjct: 267  SVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325

Query: 894  LEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNN-NSSPDKPFKTS 948
            L          L ++  +DL  N++  +    F       TL    N   +    P    
Sbjct: 326  LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385

Query: 949  FSISG------PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 1002
              +SG      P+ ++   ++ + E   +N+   Y    +  L  L L+ N+       Q
Sbjct: 386  IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 1003 I-GNLTRIQTLNLSHNNLTGTI-----PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT 1056
                   ++ L L  N L            F  L H++ L L++N L+   P     L  
Sbjct: 446  TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 1057 LAIFIVAYNNLSGKIPEWTAQ--------------------FATFNKSSYDGNPFLCGLP 1096
            L    +  N L+  +                          F + +      N F+C   
Sbjct: 506  LRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECE 564

Query: 1097 LP--------------------ICRSLATMSEAS----TSNEGDDNLIDMDSFFITFTIS 1132
            L                      C    + S  S    ++   D+  +     F  F + 
Sbjct: 565  LSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVC 624

Query: 1133 YVIVIFGIVVVLYVNPYWRRRWLYL 1157
             V +   ++ +L V  +    ++  
Sbjct: 625  TVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  167 bits (425), Expect = 1e-42
 Identities = 93/525 (17%), Positives = 182/525 (34%), Gaps = 69/525 (13%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA 132
            + AS F   +QL+ L+L         + E    L    NL++LDL  +        +  
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP---NLRILDLGSSKIYFLHPDAFQ 94

Query: 133 RLSSLRSLYLSDNRL-EGSIDVKELDSLRDLEELDIGGNKIDKFMVSK---GLSKLKSLG 188
            L  L  L L    L +  +      +L+ L  LD+  N+I    +      L+ LKS+ 
Sbjct: 95  GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154

Query: 189 LSGTGFKGTFDVREFDSF--NNLEVLDMSGNEIDNL--VVPQGLERLSRLSKLKKLDLRG 244
            S           E +      L    ++ N + +   V         R   L+ LD+ G
Sbjct: 155 FSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213

Query: 245 NLCNNSILS------------SVARLSSLTSLHLSHNILQGSIDAKEFDSL--SNLEELD 290
           N     I              S+     +       + ++   D   F  L  S++  LD
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLD 272

Query: 291 INDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTAT 350
           ++   + ++  SR +  L+ LK L+L+   I       ++     +L  L+L  N     
Sbjct: 273 LSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIAD--EAFYGLDNLQVLNLSYNLLGEL 329

Query: 351 LTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHF 410
            ++    +    + Y+ L  + +   +          L+ L +    +            
Sbjct: 330 YSSN--FYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT------TIHFI 380

Query: 411 KSLEHLDMRFARIA-----------LNTSFLQI-------IGESMPSLKYLSLSGSTLGT 452
            S+  + +   ++            ++ S  ++           +P L+ L L+ +   +
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440

Query: 453 NSSRILDQGLCPLAHLQELYIDNNDLRG----SLPWC-LANTTSLRILDVSFNQLTGSIS 507
            S             L++L++  N L+      L W      + L++L ++ N L  S+ 
Sbjct: 441 CSGDQTPSENP---SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLP 496

Query: 508 SSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 552
                HLT++  L L++N       L      + L+I D   N++
Sbjct: 497 PGVFSHLTALRGLSLNSNRLT---VLSHNDLPANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  137 bits (347), Expect = 4e-33
 Identities = 79/387 (20%), Positives = 133/387 (34%), Gaps = 56/387 (14%)

Query: 694  LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVG 752
                   LT ++P  L       E L LS N ++  + +  F  L  L+ L L   +   
Sbjct: 9    AFYRFCNLT-QVPQVLN----TTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPL 62

Query: 753  EI-PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI--PVEFCRL 809
             I  ++     +L+ L L ++ +    P     L  L  + +    L   +     F  L
Sbjct: 63   TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 810  DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 869
             +L  LD+S N I  SL                          +F   +SL ++D S N 
Sbjct: 123  KALTRLDLSKNQIR-SLYLH----------------------PSFGKLNSLKSIDFSSNQ 159

Query: 870  LNGSIPDWIDGLSQ--LSHLNLAHNNLEGEVPIQLCRLNQ------LQLLDLSDNNLHGL 921
            +       ++ L    LS  +LA N+L   V +   +         L++LD+S N     
Sbjct: 160  IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219

Query: 922  IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 981
            I   F N        +           F            I +  + T   +A       
Sbjct: 220  ITGNFSNAISKSQAFSLILAHHIMGAGFG--------FHNIKDPDQNTFAGLA------- 264

Query: 982  LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041
             S +  LDLS   +          L  ++ LNL++N +       F  L +++ L+LSYN
Sbjct: 265  RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 1042 KLSGKIPRQLVDLNTLAIFIVAYNNLS 1068
             L          L  +A   +  N+++
Sbjct: 325  LLGELYSSNFYGLPKVAYIDLQKNHIA 351

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  163 bits (414), Expect = 5e-43
 Identities = 91/472 (19%), Positives = 180/472 (38%), Gaps = 60/472 (12%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
             +     L   N+            + L+ +  L        +  +  +  L++L  + 
Sbjct: 23  LAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVR 201
            S+N+L    D+  L +L  L ++ +  N+I        L+ L  L L         D+ 
Sbjct: 75  FSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT---DID 128

Query: 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 261
              +  NL  L++S N I        +  LS L+ L++L     +   + L  +A L++L
Sbjct: 129 PLKNLTNLNRLELSSNTI------SDISALSGLTSLQQLSFGNQV---TDLKPLANLTTL 179

Query: 262 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGI 321
             L +S N +    D      L+NLE L   +N+I ++        L  L  L L+G  +
Sbjct: 180 ERLDISSNKVS---DISVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQL 233

Query: 322 RDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI 381
           +D    + ++ S  +L  L L +N     ++    L   T L  L L  +   IS +  +
Sbjct: 234 KD----IGTLASLTNLTDLDLANNQ----ISNLAPLSGLTKLTELKLGAN--QISNISPL 283

Query: 382 GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLK 441
             +  +L NL ++  ++  +       + K+L +L + F  I+  +        S+  L+
Sbjct: 284 AGL-TALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDISPV-----SSLTKLQ 334

Query: 442 YLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ 501
            L    + +   SS      L  L ++  L   +N +    P  LAN T +  L ++   
Sbjct: 335 RLFFYNNKVSDVSS------LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386

Query: 502 LTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 553
                +++P+ +  ++       N     ++   + +       D   N  +
Sbjct: 387 ----WTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  158 bits (403), Expect = 1e-41
 Identities = 81/475 (17%), Positives = 175/475 (36%), Gaps = 59/475 (12%)

Query: 126 NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLK 185
           N + +   L+      L    +  ++   +LD    +  L      I      + L+ L 
Sbjct: 15  NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQ---VTTLQADRLGIKSIDGVEYLNNLT 71

Query: 186 SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 245
            +  S        D+    +   L  + M+ N+I        +  L+ L+ L  L L  N
Sbjct: 72  QINFSNNQLT---DITPLKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNN 122

Query: 246 LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 305
               + +  +  L++L  L LS N +    D      L++L++L   +   D   ++   
Sbjct: 123 --QITDIDPLKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFGNQVTDLKPLA--- 174

Query: 306 RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY 365
             L  L+ LD+S   + D    +  +    +L +L   +N     ++    L   TNL+ 
Sbjct: 175 -NLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQ----ISDITPLGILTNLDE 225

Query: 366 LTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL 425
           L+L+ +   +  + ++ S   +L +L ++  +++ +           L  L +   +I+ 
Sbjct: 226 LSLNGN--QLKDIGTLAS-LTNLTDLDLANNQISNL---APLSGLTKLTELKLGANQISN 279

Query: 426 NTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWC 485
            +         + +L  L L+ + L   S       +  L +L  L +  N++    P  
Sbjct: 280 ISPL-----AGLTALTNLELNENQLEDIS------PISNLKNLTYLTLYFNNISDISP-- 326

Query: 486 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 545
           +++ T L+ L    N+++     S L +LT+I  L   +N       L PL N +++   
Sbjct: 327 VSSLTKLQRLFFYNNKVS---DVSSLANLTNINWLSAGHNQIS---DLTPLANLTRITQL 380

Query: 546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH 600
              +           +      +   +   N   ++  P  +       E +++ 
Sbjct: 381 GLNDQAWTNAPVNYKAN-----VSIPNTVKNVTGALIAPATISDGGSYTEPDITW 430

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  156 bits (396), Expect = 9e-41
 Identities = 98/476 (20%), Positives = 171/476 (35%), Gaps = 89/476 (18%)

Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
           LA   +  +   ++  ++     +   +  L      +    S   + +L ++ ++  SN
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 77

Query: 525 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 584
           N       + PL N +KL      NN+I   I    +LT    L  L+L +N        
Sbjct: 78  NQLT---DITPLKNLTKLVDILMNNNQIAD-ITPLANLT---NLTGLTLFNN-------- 122

Query: 585 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 644
                       +++ I  +         N T L  L L +++++      +     L+ 
Sbjct: 123 ------------QITDIDPLK--------NLTNLNRLELSSNTISDI--SALSGLTSLQQ 160

Query: 645 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 704
           L   N       P+     L +L   +IS N +  S  S    +  L+ L  +NN+++  
Sbjct: 161 LSFGNQ-VTDLKPLAN---LTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDI 214

Query: 705 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 764
            P  +     NL+ LSL+ N LK      + SL NL  L L  N      P  LS  + L
Sbjct: 215 TPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267

Query: 765 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 824
             L L  N +S   P  L  L  L ++ + +N LE   P     L +L  L +  NNIS 
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 825 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL 884
             P                            + + L  L    N ++      +  L+ +
Sbjct: 324 ISP--------------------------VSSLTKLQRLFFYNNKVSD--VSSLANLTNI 355

Query: 885 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS 940
           + L+  HN +    P+    L ++  L L+D        +   N ++  +  N + 
Sbjct: 356 NWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (395), Expect = 1e-40
 Identities = 89/447 (19%), Positives = 181/447 (40%), Gaps = 57/447 (12%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
            T   Q+ +L      I      + ++G+  LNNL  ++ S N   +  ++ L  L+ L 
Sbjct: 42  QTDLDQVTTLQADRLGI------KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLV 93

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTF 198
            + +++N++    D+  L +L +L  L +  N+I      K L+ L  L LS        
Sbjct: 94  DILMNNNQIA---DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS--- 147

Query: 199 DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL 258
           D+       +L+ L       D       L+ L+ L+ L++LD+  N    S +S +A+L
Sbjct: 148 DISALSGLTSLQQLSFGNQVTD-------LKPLANLTTLERLDISSN--KVSDISVLAKL 198

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
           ++L SL  ++N +           L+NL+EL +N N++ ++        L  L  LDL+ 
Sbjct: 199 TNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLAN 252

Query: 319 VGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLL 378
             I +    L  +     L  L L +N     ++    L   T L  L L+++   +  +
Sbjct: 253 NQISN----LAPLSGLTKLTELKLGANQ----ISNISPLAGLTALTNLELNEN--QLEDI 302

Query: 379 QSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMP 438
             I +   +L  L++    ++ +           L+ L     ++    S +  +  ++ 
Sbjct: 303 SPISN-LKNLTYLTLYFNNISDI---SPVSSLTKLQRLFFYNNKV----SDVSSLA-NLT 353

Query: 439 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS 498
           ++ +LS   + +   +       L  L  + +L +++     +     AN   + I +  
Sbjct: 354 NINWLSAGHNQISDLTP------LANLTRITQLGLNDQAWTNAPVNYKAN---VSIPNTV 404

Query: 499 FNQLTGSISSSPLVHLTSIEELRLSNN 525
            N     I+ + +    S  E  ++ N
Sbjct: 405 KNVTGALIAPATISDGGSYTEPDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  153 bits (389), Expect = 8e-40
 Identities = 103/503 (20%), Positives = 178/503 (35%), Gaps = 51/503 (10%)

Query: 423 IALNTSFLQIIG-ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGS 481
           I  +T   QI    ++       L  + +    S         L  +  L  D   ++ S
Sbjct: 8   ITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS------QTDLDQVTTLQADRLGIK-S 60

Query: 482 LPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSK 541
           +   +    +L  ++ S NQLT     +PL +LT + ++ ++NN       + PL N + 
Sbjct: 61  ID-GVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIA---DITPLANLTN 113

Query: 542 LKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 601
           L      NN+I   I+   +LT    L  L LSSN   +++    L     L++    + 
Sbjct: 114 LTGLTLFNNQITD-IDPLKNLT---NLNRLELSSN---TISDISALSGLTSLQQLSFGN- 165

Query: 602 KMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG 661
           ++    P   L N T LE L + ++ ++      +     L  L  +NN      P+ I 
Sbjct: 166 QVTDLKP---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI- 219

Query: 662 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 721
             L +L   +++ N L      +  ++  L  LDL+NN+++   P         L  L L
Sbjct: 220 --LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKL 272

Query: 722 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 781
             N +     S +  L  L  L L  N      P  +S   +L  L L  NN+S   P  
Sbjct: 273 GANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-- 326

Query: 782 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 841
           + +L  LQ +    N +          L ++  L    N IS  L        I Q+ L+
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQIS-DLTPLANLTRITQLGLN 383

Query: 842 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI-PDWIDGLSQLSHLNLAHNNLEGEVPI 900
                           +++   +   N     I P  I      +  ++  N        
Sbjct: 384 DQAWTNAPVN----YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNE 438

Query: 901 QLCRLNQLQLLDLSDNNLHGLIP 923
                +Q   +        G + 
Sbjct: 439 VSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  141 bits (358), Expect = 8e-36
 Identities = 95/448 (21%), Positives = 167/448 (37%), Gaps = 68/448 (15%)

Query: 612  LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 671
                 +     L   ++     +      ++  L       +    VE    L +L   N
Sbjct: 20   DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGVEY---LNNLTQIN 74

Query: 672  ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 731
             S N L    P    N+  L  + ++NN++    P        NL  L+L NN +     
Sbjct: 75   FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA---NLTNLTGLTLFNNQITD--I 127

Query: 732  SRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI 791
              + +L NL  L L  N        +LS  +SL+ L   N  ++   P  L NL  L+ +
Sbjct: 128  DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERL 182

Query: 792  VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE 851
             +  N +         +L +L+ L  ++N IS  +       ++ ++ L+ N L      
Sbjct: 183  DISSNKVSDISV--LAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLK---DI 236

Query: 852  GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL 911
            GT  + ++L  LDL+ N ++   P  + GL++L+ L L  N +    P+    L  L  L
Sbjct: 237  GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNL 292

Query: 912  DLSDNNLHGLIP--SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 969
            +L++N L  + P  +  + T L   +N                         I +I   +
Sbjct: 293  ELNENQLEDISPISNLKNLTYLTLYFN------------------------NISDISPVS 328

Query: 970  TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN 1029
            +           L+ L  L    NK+       + NLT I  L+  HN ++   PL  +N
Sbjct: 329  S-----------LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPL--AN 373

Query: 1030 LRHIESLDLSYNKLSGKIPRQLVDLNTL 1057
            L  I  L L+    +        +++  
Sbjct: 374  LTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  138 bits (349), Expect = 1e-34
 Identities = 96/491 (19%), Positives = 165/491 (33%), Gaps = 78/491 (15%)

Query: 333 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 392
           +        L   N    +T T    +   +  L      L I  +  +     +L  ++
Sbjct: 22  ALAEKMKTVLGKTN----VTDTVSQTDLDQVTTLQA--DRLGIKSIDGVEY-LNNLTQIN 74

Query: 393 MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 452
            S  ++  +       +   L  + M   +IA  T        ++ +L  L+L  + +  
Sbjct: 75  FSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPL-----ANLTNLTGLTLFNNQITD 126

Query: 453 NSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV 512
                    L  L +L  L + +N +       L+  TSL+ L              PL 
Sbjct: 127 IDP------LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQV----TDLKPLA 174

Query: 513 HLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS 572
           +LT++E L +S+N       +  L   + L+   A NN+I+  I     LT    L  LS
Sbjct: 175 NLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISD-ITPLGILT---NLDELS 227

Query: 573 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF 632
           L+ N                        +K IG        + T L  L L N+ ++   
Sbjct: 228 LNGN-----------------------QLKDIGTL-----ASLTNLTDLDLANNQISNL- 258

Query: 633 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 692
             P+    +L  L +  N      P+     L +L    ++ N L+   P    N+  L 
Sbjct: 259 -APLSGLTKLTELKLGANQISNISPLAG---LTALTNLELNENQLEDISP--ISNLKNLT 312

Query: 693 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 752
           +L L  N ++   P         L+ L   NN +     S + +L N+ WL    N    
Sbjct: 313 YLTLYFNNISDISPVS---SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
             P  L+  + +  L LN+   +     +  N+     +      L  P         S 
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA--TISDGGSY 423

Query: 813 QILDISDNNIS 823
              DI+ N  S
Sbjct: 424 TEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  133 bits (338), Expect = 3e-33
 Identities = 86/411 (20%), Positives = 149/411 (36%), Gaps = 65/411 (15%)

Query: 664  LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723
            L   +   +    +  ++     ++  +  L      +     D +     NL  ++ SN
Sbjct: 23   LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVE-YLNNLTQINFSN 77

Query: 724  NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 783
            N L       + +L  L  +L+  N      P  L+  ++L GL L NN ++   P  L 
Sbjct: 78   NQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LK 131

Query: 784  NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 843
            NL  L  + +  N +          L SLQ L    N ++   P      +++++ +S N
Sbjct: 132  NLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKPLANLT-TLERLDISSN 187

Query: 844  MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 903
             +            ++L +L  + N ++   P  +  L+ L  L+L  N L+      L 
Sbjct: 188  KVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLA 240

Query: 904  RLNQLQLLDLSDNNLHGLIP--SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 961
             L  L  LDL++N +  L P       T L    N                        +
Sbjct: 241  SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN------------------------Q 276

Query: 962  ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 1021
            I  I                L+ L  L+L+ N+L    P  I NL  +  L L  NN++ 
Sbjct: 277  ISNISPLAG-----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 1022 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072
              P+  S+L  ++ L    NK+S      L +L  +      +N +S   P
Sbjct: 324  ISPV--SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  125 bits (317), Expect = 1e-30
 Identities = 79/389 (20%), Positives = 132/389 (33%), Gaps = 63/389 (16%)

Query: 683  SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 742
             +   +       L    +T  +          +  L      +K      +  L NL  
Sbjct: 18   FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIK--SIDGVEYLNNLTQ 72

Query: 743  LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 802
            +    N      P  L   + L  + +NNN ++   P  L NL  L  + +  N +    
Sbjct: 73   INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 803  PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 862
            P     L +L  L++S N IS  + +     S++Q+                 N ++L  
Sbjct: 129  P--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQ----VTDLKPLANLTTLER 181

Query: 863  LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 922
            LD+S N +  S    +  L+ L  L   +N +    P+    L  L  L L+ N L  + 
Sbjct: 182  LDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIG 237

Query: 923  P-SCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 980
              +   N T L  + N                         I  +   +           
Sbjct: 238  TLASLTNLTDLDLANNQ------------------------ISNLAPLSG---------- 263

Query: 981  VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 1040
             L+ L  L L  N++   I P +  LT +  L L+ N L    P+  SNL+++  L L +
Sbjct: 264  -LTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYF 318

Query: 1041 NKLSGKIPRQLVDLNTLAIFIVAYNNLSG 1069
            N +S   P  +  L  L       N +S 
Sbjct: 319  NNISDISP--VSSLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  109 bits (275), Expect = 3e-25
 Identities = 71/381 (18%), Positives = 124/381 (32%), Gaps = 89/381 (23%)

Query: 696  LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP 755
              +  +     D             L   ++   +      L  +  L  +      +  
Sbjct: 9    TQDTPINQIFTDT---ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSI 61

Query: 756  QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 815
              +   ++L  +  +NN L+   P  L NL  L  I+M  N +    P     L +L  L
Sbjct: 62   DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117

Query: 816  DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 875
             + +N I+   P                            N ++L  L+LS N ++    
Sbjct: 118  TLFNNQITDIDP--------------------------LKNLTNLNRLELSSNTISDISA 151

Query: 876  DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTL 931
              + GL+ L  L+   N +    P+    L  L+ LD+S N +  +            +L
Sbjct: 152  --LSGLTSLQQLSF-GNQVTDLKPLA--NLTTLERLDISSNKVSDISV--LAKLTNLESL 204

Query: 932  HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 991
              + N                        +I +I                L+ L  L L+
Sbjct: 205  IATNN------------------------QISDITPLGI-----------LTNLDELSLN 229

Query: 992  CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 1051
             N+L       + +LT +  L+L++N ++   PL  S L  +  L L  N++S   P  L
Sbjct: 230  GNQLKD--IGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--L 283

Query: 1052 VDLNTLAIFIVAYNNLSGKIP 1072
              L  L    +  N L    P
Sbjct: 284  AGLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 10/120 (8%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
                 +  L    N I        L  L+ L  +  L L+  A+ N  ++  A +S   
Sbjct: 349 LANLTNINWLSAGHNQI------SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFM-VSKGLSKLKSLGLSGTGFKGT 197
           ++      L     + +  S     E DI  N       VS   S+  ++G   T F GT
Sbjct: 403 TVKNVTGALIAPATISDGGS---YTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGT 459

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  161 bits (410), Expect = 6e-42
 Identities = 89/568 (15%), Positives = 169/568 (29%), Gaps = 79/568 (13%)

Query: 491  SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 550
            +  + D      T    S P     +++ L LS N     +    L   + L++   K++
Sbjct: 6    ASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSS 60

Query: 551  EINGEINES--HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFP 608
             IN  I     +SL     L+ L LS N                           +    
Sbjct: 61   RIN-TIEGDAFYSLG---SLEHLDLSDN--------------------------HLSSLS 90

Query: 609  NWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 667
            +      + L++L L+ +            +   L+ L + N      I       L SL
Sbjct: 91   SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 668  VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK 727
                I   +L      S  ++  +  L L  ++    + +  A    ++ +L L + +L 
Sbjct: 151  NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA 209

Query: 728  GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 787
               FS +        +            +S ++   L    L  + +         +   
Sbjct: 210  RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTL 263

Query: 788  LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH 846
                    +  +    +      +++ L I    +   L + +  L  +K++ +  + + 
Sbjct: 264  NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 847  GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW---IDGLSQLSHLNLAHNNLE--GEVPIQ 901
              +      +  SL  LDLS N +                L  L L+ N+L    +    
Sbjct: 324  -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 902  LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE---SYNN-NSSPDKPFK--TSFSISGPQ 955
            L  L  L  LD+S N  H +  SC     +     S            +      +S   
Sbjct: 383  LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN 442

Query: 956  GSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLS 1015
                  +     F  +             L  L +S NKL   +P        +  + +S
Sbjct: 443  ------LDSFSLFLPR-------------LQELYISRNKLK-TLPD-ASLFPVLLVMKIS 481

Query: 1016 HNNLTGTIPLTFSNLRHIESLDLSYNKL 1043
             N L       F  L  ++ + L  N  
Sbjct: 482  RNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  158 bits (401), Expect = 9e-41
 Identities = 91/512 (17%), Positives = 187/512 (36%), Gaps = 46/512 (8%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
              ++SLDLS+N I      +    L    NL++L L  +  N     +   L SL  L 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGD----LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSK---GLSKLKSLGLSGTGFKGTF 198
           LSDN L  S+       L  L+ L++ GN      V+     L+ L++L +         
Sbjct: 81  LSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 199 DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL 258
              +F    +L  L++    + N       + L  +  +  L L  +     +      L
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNY----QSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 259 SSLTSLHLSHNILQG--SIDAKEFDSLSNLEELDINDNEIDN------VEVSRGYRGLRK 310
           SS+  L L    L           +  S +++L    + + +      +++ R    L +
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 311 LKSLDLSGVGIRD-GNKLLQSMGSFPSLNTLHLESNNFT---ATLTTTQELHNFTNLEYL 366
           ++  D +  G+ D        +     + T+ +   +          +        ++ +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 367 TLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV--NGVLSGQGFPHFKSLEHLDMRFARIA 424
           T+++S +   +  S      SL+ L +S   +    + +      + SL+ L +    + 
Sbjct: 316 TVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 425 LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW 484
                 +I+  ++ +L  L +S +T        +         ++ L + +  +R  +  
Sbjct: 375 SMQKTGEIL-LTLKNLTSLDISRNTFHP-----MPDSCQWPEKMRFLNLSSTGIR-VVKT 427

Query: 485 CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI 544
           C+    +L +LDVS N L  S S      L  ++EL +S N  +   +L        L +
Sbjct: 428 CI--PQTLEVLDVSNNNLD-SFSL----FLPRLQELYISRNKLK---TLPDASLFPVLLV 477

Query: 545 FDAKNNEINGEINESHSLTPKFQLKSLSLSSN 576
                N++   + +         L+ + L +N
Sbjct: 478 MKISRNQLK-SVPDG-IFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  151 bits (384), Expect = 1e-38
 Identities = 96/506 (18%), Positives = 188/506 (37%), Gaps = 45/506 (8%)

Query: 438 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 497
            ++K L LS + +    + I    L   A+LQ L + ++ +         +  SL  LD+
Sbjct: 26  AAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 498 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH-SKLKIFDAKNNEINGEI 556
           S N L+ S+SSS    L+S++ L L  N ++  + +  LF + + L+     N E   EI
Sbjct: 82  SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 557 NESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNT 616
                      L  L + +    +    + L    ++    L              +  +
Sbjct: 140 RRI-DFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHL-SESAFLLEIFADILS 196

Query: 617 KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI---------LPSL 667
            + +L L + +LA     P+   +    +                ++         L  +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 668 VYFNISMNALDGSIPSSFGNV--------IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 719
            + + ++N L    PS    V        + ++ L +    L       +      ++ +
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRI 315

Query: 720 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQS---LSKCSSLKGLYLNNNNLS 775
           ++ N+ +   +       L++L +L L  N  V E  ++        SL+ L L+ N+L 
Sbjct: 316 TVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 776 --GKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 833
              K    L  LK L  + + +N    P+P      + ++ L++S   I   + +C  P 
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC-IPQ 431

Query: 834 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN 893
           +++ + +S N L     +        L  L +S N L  ++PD       L  + ++ N 
Sbjct: 432 TLEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQ 484

Query: 894 LEGEVPIQLCRLNQLQLLDLSDNNLH 919
           L+        RL  LQ + L  N   
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  151 bits (383), Expect = 2e-38
 Identities = 89/508 (17%), Positives = 189/508 (37%), Gaps = 46/508 (9%)

Query: 410 FKSLEHLDMRFARIAL--NTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 467
             +++ LD+ F +I    +         +  +L+ L L  S +    + I       L  
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDL-----RACANLQVLILKSSRI----NTIEGDAFYSLGS 75

Query: 468 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 527
           L+ L + +N L           +SL+ L++  N       +S   +LT+++ LR+ N   
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 528 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 587
              +        + L   + K   +     +S SL     +  L+L  +    +    F 
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRN--YQSQSLKSIRDIHHLTLHLSESAFL-LEIFA 192

Query: 588 YHQHELKEAELSHIKMIGEFPNWL--LENNTKLEFLYLVNDSLAGP-------FRLPIHS 638
                ++  EL    +     + L   E ++ ++ L      L              I  
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 639 HKRLRFLDVSNNNFQGHIPVEIGDI-------LPSLVYFNISMNALDGSIPSSFGNVIFL 691
              + F D + N      P E   +         ++   +I    L   + + +  +  +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 692 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSR---IFSLRNLRWLLLEGN 748
           + + + N+K+   +P   +    +LEFL LS N +            +  +L+ L+L  N
Sbjct: 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 749 HF--VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF 806
           H   + +  + L    +L  L ++ N     +P      + ++ + +    +     V+ 
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKT 427

Query: 807 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866
           C   +L++LD+S+NN+  S     +   ++++++S+N L   L + + F    L+ + +S
Sbjct: 428 CIPQTLEVLDVSNNNLD-SFSL--FLPRLQELYISRNKLK-TLPDASLFP--VLLVMKIS 481

Query: 867 YNYLNGSIPDWIDGLSQLSHLNLAHNNL 894
            N L        D L+ L  + L  N  
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  148 bits (376), Expect = 1e-37
 Identities = 109/591 (18%), Positives = 201/591 (34%), Gaps = 96/591 (16%)

Query: 116 LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 175
            D    +F + + S L   ++++SL LS N++   I   +L +  +L+ L +  ++I   
Sbjct: 10  CDGRSRSFTS-IPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI--- 62

Query: 176 MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 235
                                T +   F S  +LE LD+S N + +L           LS
Sbjct: 63  --------------------NTIEGDAFYSLGSLEHLDLSDNHLSSL--SSSW--FGPLS 98

Query: 236 KLKKLDLRGN-LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
            LK L+L GN      + S    L++L +L + +      I   +F  L++L EL+I   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 295 EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTA-TLTT 353
            + N + S+  + +R +  L L         ++        S+  L L   N      + 
Sbjct: 159 SLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFAD--ILSSVRYLELRDTNLARFQFSP 215

Query: 354 TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 413
                  + ++ L    S L       +  +   +  LS                 F   
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS--------------EVEFDDC 261

Query: 414 EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 473
               +     + +    ++      +++ L +    L       L      L  ++ + +
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL----FYDLSTVYSLLEKVKRITV 317

Query: 474 DNNDLRGSLPWCLANTTSLRILDVSFNQLT--GSISSSPLVHLTSIEELRLSNNHFR-IP 530
           +N+ +         +  SL  LD+S N +      +S+      S++ L LS NH R + 
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 531 VSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQ 590
            + E L     L   D   N  +   +         +++ L+LSS               
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE---KMRFLNLSST-------------- 420

Query: 591 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNN 650
                        I      +      LE L + N++L       +    RL+ L +S N
Sbjct: 421 ------------GIRVVKTCIP---QTLEVLDVSNNNLD---SFSLFLP-RLQELYISRN 461

Query: 651 NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 701
             +  +P     + P L+   IS N L       F  +  LQ + L  N  
Sbjct: 462 KLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  148 bits (376), Expect = 1e-37
 Identities = 75/453 (16%), Positives = 158/453 (34%), Gaps = 62/453 (13%)

Query: 642  LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 701
            ++ LD+S N    +I         +L    +  + ++     +F ++  L+ LDLS+N L
Sbjct: 28   MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 702  TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIP-QSLS 759
            +  +         +L++L+L  N  +    + +F  L NL+ L +       EI     +
Sbjct: 87   S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 760  KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 819
              +SL  L +   +L     + L +++ + H+ +  +     + +    L S++ L++ D
Sbjct: 146  GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 820  NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT----------LDLSYNY 869
             N++    S      +             L + +F     L+            D + N 
Sbjct: 206  TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 870  LNGSIPDWIDGLS--------QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 921
            L    P   D +S         +  L++    L  ++      L +++ + + ++ +  +
Sbjct: 266  LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 922  IPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977
              S   +      L  S N     ++  K S                             
Sbjct: 326  PCSFSQHLKSLEFLDLSENLMV--EEYLKNSACKGA------------------------ 359

Query: 978  QGRVLSLLAGLDLSCNKL--VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 1035
                   L  L LS N L  +      +  L  + +L++S N     +P +      +  
Sbjct: 360  ----WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF 414

Query: 1036 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068
            L+LS   +   +   +    TL +  V+ NNL 
Sbjct: 415  LNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  139 bits (352), Expect = 1e-34
 Identities = 95/475 (20%), Positives = 177/475 (37%), Gaps = 75/475 (15%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           L++S F P   L+ L+L  N             L+   NL+ L +     N    S + R
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT---NLQTLRIG----NVETFSEIRR 141

Query: 134 -----LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF--MVSKGLSKLKS 186
                L+SL  L +    L  +   + L S+RD+  L +  ++      + +  LS ++ 
Sbjct: 142 IDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 187 LGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLV------VPQGLERLSRLSKLKKL 240
           L L  T     F             +         L       + + L  +  LS+++  
Sbjct: 201 LELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 241 DLRGN---LCNNSILSSVARLSSLTSLHLSHNILQG----SIDAKEFDSLSNLEELDIND 293
           D   N     N S    V+ L  + ++ +    +         +  +  L  ++ + + +
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 294 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRD-GNKLLQSMGSFPSLNTLHLESNNFTATLT 352
           +++  V  S   + L+ L+ LDLS   + +   K     G++PSL TL L  N+  +   
Sbjct: 320 SKVFLVPCSFS-QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 353 TTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKS 412
           T + L    NL  L +  ++ H         +  S +                     + 
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH--------PMPDSCQWP-------------------EK 411

Query: 413 LEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELY 472
           +  L++       +T    +      +L+ L +S + L + S          L  LQELY
Sbjct: 412 MRFLNLS------STGIRVVKTCIPQTLEVLDVSNNNLDSFSLF--------LPRLQELY 457

Query: 473 IDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 527
           I  N L+ +LP   +    L ++ +S NQL  S+       LTS++++ L  N +
Sbjct: 458 ISRNKLK-TLPDA-SLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  138 bits (350), Expect = 3e-34
 Identities = 74/401 (18%), Positives = 138/401 (34%), Gaps = 30/401 (7%)

Query: 691  LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 749
                D  +   T  IP  L      ++ L LS N +  +I         NL+ L+L+ + 
Sbjct: 7    SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSR 61

Query: 750  FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL-EGPIPVEFCR 808
                   +     SL+ L L++N+LS     W G L  L+++ +  N      +   F  
Sbjct: 62   INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 809  LDSLQILDISDNNISGSLP-SCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866
            L +LQ L I +      +    F  L S+ ++ +    L    +  +  +   +  L L 
Sbjct: 122  LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLH 180

Query: 867  YNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-----------EVPIQLCRLNQLQLLDLSD 915
             +     +  + D LS + +L L   NL               P++        L D S 
Sbjct: 181  LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 916  NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 975
            N L  L+    + + +       +       +   +    G VE   +         + Y
Sbjct: 241  NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 976  AYQG--RVLSLLAGLDLSCNKLVGHIPPQIG-NLTRIQTLNLSHNNLTGTIPLT---FSN 1029
                   +L  +  + +  +K+   +P     +L  ++ L+LS N +             
Sbjct: 301  DLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 1030 LRHIESLDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNNLS 1068
               +++L LS N L    K    L+ L  L    ++ N   
Sbjct: 360  WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  107 bits (270), Expect = 2e-24
 Identities = 59/368 (16%), Positives = 118/368 (32%), Gaps = 45/368 (12%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA 132
              +      + +  L L  +  A        + LS +  L++ D +   F  + L    
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

Query: 133 RLSSLRSLYLSDNRLEG--------------SIDVKELDSLRDLEELDIGGNKIDKF--M 176
             S ++ L    + L                 +   E D        D   ++ D    +
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280

Query: 177 VSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSK 236
                  ++ L +             +     ++ + +  +++  +  P        L  
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLS-TVYSLLEKVKRITVENSKVFLV--PCSF--SQHLKS 335

Query: 237 LKKLDLRGNLCNNSIL---SSVARLSSLTSLHLSHNILQG-SIDAKEFDSLSNLEELDIN 292
           L+ LDL  NL     L   +      SL +L LS N L+      +   +L NL  LDI+
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

Query: 293 DNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATL 351
            N    +      +   K++ L+LS         +         +L  L + +NN  +  
Sbjct: 396 RNTFHPMP--DSCQWPEKMRFLNLS------STGIRVVKTCIPQTLEVLDVSNNNLDSFS 447

Query: 352 TTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFK 411
                      L+ L +  +   +  L    S+FP L  + +S  ++   +    F    
Sbjct: 448 L------FLPRLQELYISRN--KLKTLPD-ASLFPVLLVMKISRNQLK-SVPDGIFDRLT 497

Query: 412 SLEHLDMR 419
           SL+ + + 
Sbjct: 498 SLQKIWLH 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  105 bits (263), Expect = 2e-23
 Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 24/231 (10%)

Query: 72  WYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVL--- 128
           +Y  +++++  ++++ + +  + +              L +L+ LDLS N      L   
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKV----FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 129 SSLARLSSLRSLYLSDNRLEG-SIDVKELDSLRDLEELDIGGNKIDKFMVS-KGLSKLKS 186
           +      SL++L LS N L       + L +L++L  LDI  N       S +   K++ 
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRF 414

Query: 187 LGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNL 246
           L LS TG +             LEVLD+S N +D+            L +L++L +  N 
Sbjct: 415 LNLSSTGIRVVKT----CIPQTLEVLDVSNNNLDSFS--------LFLPRLQELYISRN- 461

Query: 247 CNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 297
                L   +    L  + +S N L+ S+    FD L++L+++ ++ N  D
Sbjct: 462 -KLKTLPDASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.5 bits (217), Expect = 9e-18
 Identities = 47/246 (19%), Positives = 81/246 (32%), Gaps = 44/246 (17%)

Query: 807  CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866
               D+  + D    + + S+PS     ++K + LS N +   +  G    C++L  L L 
Sbjct: 2    LSCDASGVCDGRSRSFT-SIPSGL-TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILK 58

Query: 867  YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL-IPSC 925
             + +N    D    L  L HL+L+ N+L          L+ L+ L+L  N    L + S 
Sbjct: 59   SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 926  FDN----TTLHESYNNNSS--PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 979
            F N     TL        S      F                                  
Sbjct: 119  FPNLTNLQTLRIGNVETFSEIRRIDFAG-------------------------------- 146

Query: 980  RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS 1039
              L+ L  L++    L  +    + ++  I  L L  +     + +    L  +  L+L 
Sbjct: 147  --LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 1040 YNKLSG 1045
               L+ 
Sbjct: 205  DTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.2 bits (193), Expect = 6e-15
 Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 44/221 (19%)

Query: 855  FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 914
             +C +    D        SIP  +   + +  L+L+ N +       L     LQ+L L 
Sbjct: 2    LSCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 915  DNNLHGLIPSCFDN----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFT 969
             + ++ +    F +      L  S N+ SS     F                        
Sbjct: 59   SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP---------------------- 96

Query: 970  TKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNLSHNNLTGTIP-LTF 1027
                        LS L  L+L  N      +     NLT +QTL + +      I  + F
Sbjct: 97   ------------LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 1028 SNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068
            + L  +  L++    L     + L  +  +    +  +  +
Sbjct: 145  AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  149 bits (378), Expect = 2e-39
 Identities = 81/414 (19%), Positives = 152/414 (36%), Gaps = 71/414 (17%)

Query: 113 LKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKI 172
              L       N   +   A L+      L    +    DV   + L  + +L + G K+
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVT---DVVTQEELESITKLVVAGEKV 56

Query: 173 DKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLS 232
                 + L+ L+ L L+G       D+    +   L  L +  N+I ++        L 
Sbjct: 57  ASIQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKITDI------SALQ 107

Query: 233 RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIN 292
            L+ L++L L  +  N S +S +A L+ + SL+L  N     +      +++ L  L + 
Sbjct: 108 NLTNLRELYLNED--NISDISPLANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVT 163

Query: 293 DNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLT 352
           ++++ +V        L  L SL L+   I D    +  + S  SL+      N     +T
Sbjct: 164 ESKVKDVT---PIANLTDLYSLSLNYNQIED----ISPLASLTSLHYFTAYVNQ----IT 212

Query: 353 TTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKS 412
               + N T L  L + ++ +         +    L NL                     
Sbjct: 213 DITPVANMTRLNSLKIGNNKI---------TDLSPLANL-------------------SQ 244

Query: 413 LEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELY 472
           L  L++   +I+   +      + +  LK L++  + +   S       L  L+ L  L+
Sbjct: 245 LTWLEIGTNQISDINAV-----KDLTKLKMLNVGSNQISDISV------LNNLSQLNSLF 293

Query: 473 IDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 526
           ++NN L       +   T+L  L +S N +T      PL  L+ ++    +N  
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (370), Expect = 3e-38
 Identities = 68/340 (20%), Positives = 140/340 (41%), Gaps = 39/340 (11%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
               + +  L ++   +        ++G+  L NL+ L+L+GN   +  +S L+ L  L 
Sbjct: 40  QEELESITKLVVAGEKV------ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLT 91

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTF 198
           +LY+  N++    D+  L +L +L EL +  + I        L+K+ SL L         
Sbjct: 92  NLYIGTNKIT---DISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGAN--HNLS 146

Query: 199 DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL 258
           D+    +   L  L ++ +++      + +  ++ L+ L  L L  N      +S +A L
Sbjct: 147 DLSPLSNMTGLNYLTVTESKV------KDVTPIANLTDLYSLSLNYN--QIEDISPLASL 198

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
           +SL       N +          +++ L  L I +N+I ++        L +L  L++  
Sbjct: 199 TSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKITDLS---PLANLSQLTWLEIGT 252

Query: 319 VGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLL 378
             I D    + ++     L  L++ SN     ++    L+N + L  L L+++ L    +
Sbjct: 253 NQISD----INAVKDLTKLKMLNVGSNQ----ISDISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 379 QSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 418
           + IG    +L  L +S   +  +   +       ++  D 
Sbjct: 305 EVIGG-LTNLTTLFLSQNHITDI---RPLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (358), Expect = 1e-36
 Identities = 64/366 (17%), Positives = 137/366 (37%), Gaps = 44/366 (12%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
             +     L   ++        +     L ++  L ++G    +  +  +  L++L  L 
Sbjct: 21  LAEGIRAVLQKASV------TDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVR 201
           L+ N++    D+  L +L  L  L IG NKI      + L+ L+ L L+        D+ 
Sbjct: 73  LNGNQIT---DISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNIS---DIS 126

Query: 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 261
              +   +  L++  N   +      L  LS ++ L  L +  +      ++ +A L+ L
Sbjct: 127 PLANLTKMYSLNLGANHNLSD-----LSPLSNMTGLNYLTVTES--KVKDVTPIANLTDL 179

Query: 262 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGI 321
            SL L++N ++   D     SL++L       N+I ++        + +L SL +    I
Sbjct: 180 YSLSLNYNQIE---DISPLASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKI 233

Query: 322 RDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI 381
            D    L  + +   L  L + +N     ++    + + T L+ L +  +   IS +  +
Sbjct: 234 TD----LSPLANLSQLTWLEIGTNQ----ISDINAVKDLTKLKMLNVGSN--QISDISVL 283

Query: 382 GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLK 441
            +    L +L ++  ++      +      +L  L +    I            S+  + 
Sbjct: 284 NN-LSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITDIRPL-----ASLSKMD 336

Query: 442 YLSLSG 447
               + 
Sbjct: 337 SADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (351), Expect = 7e-36
 Identities = 75/422 (17%), Positives = 146/422 (34%), Gaps = 92/422 (21%)

Query: 656  IPVEIGDI-----LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA 710
            +P  I  I     L   +   +   ++   +      +  +  L ++  K+   I     
Sbjct: 8    LPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG--I 62

Query: 711  MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 770
                NLE+L+L+ N +     S + +L  L  L +  N        +L   ++L+ LYLN
Sbjct: 63   EYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLN 118

Query: 771  NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 830
             +N+S   P  L NL  +  + +  NH    +      +  L  L ++++ +    P   
Sbjct: 119  EDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--- 172

Query: 831  YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 890
                                     N + L +L L+YN +    P  +  L+ L +    
Sbjct: 173  -----------------------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY 207

Query: 891  HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFK 946
             N +    P  +  + +L  L + +N +  L P    N    T L    N  S  +    
Sbjct: 208  VNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN---- 259

Query: 947  TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 1006
               ++                              L+ L  L++  N++       + NL
Sbjct: 260  ---AVKD----------------------------LTKLKMLNVGSNQISD--ISVLNNL 286

Query: 1007 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 1066
            +++ +L L++N L          L ++ +L LS N ++   P  L  L+ +     A   
Sbjct: 287  SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

Query: 1067 LS 1068
            + 
Sbjct: 345  IK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (348), Expect = 2e-35
 Identities = 79/452 (17%), Positives = 153/452 (33%), Gaps = 109/452 (24%)

Query: 468 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 527
              L      +    P   A+        +    +T  +       L SI +L ++    
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKV 56

Query: 528 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 587
               S++ +   + L+  +   N+I   I+   +L    +L +L + +N           
Sbjct: 57  A---SIQGIEYLTNLEYLNLNGNQITD-ISPLSNLV---KLTNLYIGTN----------- 98

Query: 588 YHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV 647
                    +++ I  +    N                                LR L +
Sbjct: 99  ---------KITDISALQNLTN--------------------------------LRELYL 117

Query: 648 SNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP- 706
           + +N     P+     L  +   N+  N    S  S   N+  L +L ++ +K+    P 
Sbjct: 118 NEDNISDISPL---ANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPI 173

Query: 707 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 766
            +L     +L  LSL+ N ++    S + SL +L +     N      P  ++  + L  
Sbjct: 174 ANL----TDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 767 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 826
           L + NN ++   P  L NL  L  + +  N +          L  L++L++  N IS  +
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS-DI 280

Query: 827 PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSH 886
                                        N S L +L L+ N L     + I GL+ L+ 
Sbjct: 281 SV-------------------------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 887 LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 918
           L L+ N++    P+    L+++   D ++  +
Sbjct: 316 LFLSQNHITDIRPLA--SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (346), Expect = 3e-35
 Identities = 65/292 (22%), Positives = 124/292 (42%), Gaps = 33/292 (11%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
            +   +L +L +  N I        +  L  L NL+ L L+ +  ++  +S LA L+ + 
Sbjct: 84  LSNLVKLTNLYIGTNKI------TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMY 135

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTF 198
           SL L  N     +    L ++  L  L +  +K+        L+ L SL L+    +   
Sbjct: 136 SLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE--- 190

Query: 199 DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL 258
           D+    S  +L       N+I        +  ++ +++L  L +  N    + LS +A L
Sbjct: 191 DISPLASLTSLHYFTAYVNQI------TDITPVANMTRLNSLKIGNN--KITDLSPLANL 242

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
           S LT L +  N +    D      L+ L+ L++  N+I ++        L +L SL L+ 
Sbjct: 243 SQLTWLEIGTNQIS---DINAVKDLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNN 296

Query: 319 VGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 370
             +  GN+ ++ +G   +L TL L  N+    +T  + L + + ++     +
Sbjct: 297 NQL--GNEDMEVIGGLTNLTTLFLSQNH----ITDIRPLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (336), Expect = 7e-34
 Identities = 73/386 (18%), Positives = 136/386 (35%), Gaps = 63/386 (16%)

Query: 691  LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 750
               L      +    PD             L   S+   +      L ++  L++ G   
Sbjct: 2    AATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 751  VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 810
                 Q +   ++L+ L LN N ++   P  L NL  L ++ +  N +          L 
Sbjct: 57   --ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLT 110

Query: 811  SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 870
            +L+ L ++++NIS   P       +  ++L  N     L      N + L  L ++ + +
Sbjct: 111  NLRELYLNEDNISDISPLANLT-KMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV 167

Query: 871  NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-- 928
                P  I  L+ L  L+L +N +E   P  L  L  L       N +  + P    N  
Sbjct: 168  KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 929  --TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 986
               +L    N                        KI ++                LS L 
Sbjct: 222  RLNSLKIGNN------------------------KITDLSPLAN-----------LSQLT 246

Query: 987  GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 1046
             L++  N++       + +LT+++ LN+  N ++       +NL  + SL L+ N+L  +
Sbjct: 247  WLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNE 302

Query: 1047 IPRQLVDLNTLAIFIVAYNNLSGKIP 1072
                +  L  L    ++ N+++   P
Sbjct: 303  DMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  130 bits (329), Expect = 6e-33
 Identities = 79/389 (20%), Positives = 143/389 (36%), Gaps = 61/389 (15%)

Query: 435 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRI 494
             +       L  +++    +         L  + +L +    +  S+   +   T+L  
Sbjct: 19  ADLAEGIRAVLQKASVTDVVT------QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEY 70

Query: 495 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING 554
           L+++ NQ+T     SPL +L  +  L +  N       +  L N + L+      + I+ 
Sbjct: 71  LNLNGNQIT---DISPLSNLVKLTNLYIGTNKIT---DISALQNLTNLRELYLNEDNISD 124

Query: 555 EINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLEN 614
            I+   +LT   ++ SL+L +N+                    LS +  +         N
Sbjct: 125 -ISPLANLT---KMYSLNLGANHN-------------------LSDLSPLS--------N 153

Query: 615 NTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 674
            T L +L +    +      PI +   L  L ++ N  +   P+     L SL YF   +
Sbjct: 154 MTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYV 208

Query: 675 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI 734
           N +    P    N+  L  L + NNK+T   P         L +L +  N +     + +
Sbjct: 209 NQITDITP--VANMTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQISD--INAV 261

Query: 735 FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794
             L  L+ L +  N         L+  S L  L+LNNN L  +    +G L  L  + + 
Sbjct: 262 KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 795 KNHLEGPIPVEFCRLDSLQILDISDNNIS 823
           +NH+    P     L  +   D ++  I 
Sbjct: 320 QNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (327), Expect = 1e-32
 Identities = 61/270 (22%), Positives = 115/270 (42%), Gaps = 29/270 (10%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
                 L  L L+ +NI        +  L+ L  +  L+L  N  N + LS L+ ++ L 
Sbjct: 106 LQNLTNLRELYLNEDNI------SDISPLANLTKMYSLNLGAN-HNLSDLSPLSNMTGLN 158

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTF 198
            L +++++++   DV  + +L DL  L +  N+I+       L+ L              
Sbjct: 159 YLTVTESKVK---DVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT--- 212

Query: 199 DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL 258
           D+    +   L  L +  N+I        L  L+ LS+L  L++  N    S +++V  L
Sbjct: 213 DITPVANMTRLNSLKIGNNKI------TDLSPLANLSQLTWLEIGTN--QISDINAVKDL 264

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
           + L  L++  N +    D    ++LS L  L +N+N++ N ++     GL  L +L LS 
Sbjct: 265 TKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQ 320

Query: 319 VGIRDGNKLLQSMGSFPSLNTLHLESNNFT 348
             I D    ++ + S   +++    +    
Sbjct: 321 NHITD----IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 1e-10
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
                +L+ L++  N I        +  L+ L+ L  L L+ N   N  +  +  L++L 
Sbjct: 261 VKDLTKLKMLNVGSNQI------SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 174
           +L+LS N +    D++ L SL  ++  D     I K
Sbjct: 315 TLFLSQNHIT---DIRPLASLSKMDSADFANQVIKK 347

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  148 bits (376), Expect = 4e-38
 Identities = 80/455 (17%), Positives = 149/455 (32%), Gaps = 35/455 (7%)

Query: 110 LNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGG 169
            N  K+  ++ ++    + S      +++ L LS N L   I   +L     LE L++  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 170 NKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 229
           N + + +  + LS L++L L+    +      E     ++E L  + N I  +       
Sbjct: 68  NVLYETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISRV------- 114

Query: 230 RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEEL 289
             SR    K + L  N             S +  L L  N +     A+   S   LE L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 290 DINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ---SMGSFPSLNTLHLESNN 346
           ++  N I +V+         KLK+LDLS       NKL        S   +  + L +N 
Sbjct: 175 NLQYNFIYDVKGQ---VVFAKLKTLDLS------SNKLAFMGPEFQSAAGVTWISLRNNK 225

Query: 347 FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG 406
                   + L    NLE+  L  +  H   L+   S    ++ ++    +    L+GQ 
Sbjct: 226 LV---LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA---KQTVKKLTGQN 279

Query: 407 FPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA 466
                                       + + +LK    +  +   + +  L+      A
Sbjct: 280 EEECTVPTLGHYGAYCC---EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA 336

Query: 467 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 526
             +E+       R  +        +   L+     L   +S+    H      L+ +   
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

Query: 527 FRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 561
             +  + E       L+    +  E+  E     +
Sbjct: 397 IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  138 bits (348), Expect = 2e-34
 Identities = 72/411 (17%), Positives = 143/411 (34%), Gaps = 47/411 (11%)

Query: 659  EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 718
            EI           ++ ++L  ++ S   +   ++ LDLS N L+      LA     LE 
Sbjct: 4    EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 719  LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 778
            L+LS+N L       + SL  LR L L  N+      Q L    S++ L+  NNN+S ++
Sbjct: 63   LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 779  PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIK 836
                   +G ++I +  N +     ++      +Q LD+  N I     +       +++
Sbjct: 115  S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 837  QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 896
             ++L  N ++  +K       + L TLDLS N L   +       + ++ ++L +N L  
Sbjct: 173  HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 897  EVPIQLCRLNQLQLLDLSDNNLH-GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ 955
             +   L     L+  DL  N  H G +   F      ++    +      +     + P 
Sbjct: 228  LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 956  GSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLS 1015
                  +     +  +++   +  R+++L                           L+  
Sbjct: 288  ------LGHYGAYCCEDLPAPFADRLIAL--------------------KRKEHALLSGQ 321

Query: 1016 HNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 1066
             +     +     N      +D    +    +  Q+       I +     
Sbjct: 322  GSETER-LECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKK 370

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  129 bits (325), Expect = 2e-31
 Identities = 70/459 (15%), Positives = 146/459 (31%), Gaps = 58/459 (12%)

Query: 481 SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFN 538
           ++     N    +I  V+ + L     +S      +++EL LS N         L P   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPF-- 57

Query: 539 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 598
            +KL++ +  +N +  E  +  SL+    L++L L++N                ++E   
Sbjct: 58  -TKLELLNLSSNVLY-ETLDLESLS---TLRTLDLNNN---------------YVQE--- 94

Query: 599 SHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPV 658
                        L     +E L+  N++++   R+     +  + + ++NN       +
Sbjct: 95  -------------LLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDL 138

Query: 659 EIGDILPSLVYFNISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 717
           + G     + Y ++ +N +D  +      +   L+ L+L  N +  ++   +      L+
Sbjct: 139 DEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLK 194

Query: 718 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS-G 776
            L LS+N L   +     S   + W+ L  N  V  I ++L    +L+   L  N    G
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 777 KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS----GSLPSCFYP 832
            +  +    + +Q +             E C +    +                      
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 833 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 892
              +   LS      +  E    N +    +D         I            L     
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 893 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 931
            L+ +V        +L            L  +  + + L
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (292), Expect = 2e-27
 Identities = 62/406 (15%), Positives = 134/406 (33%), Gaps = 58/406 (14%)

Query: 715  NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 774
              +   ++++SLK  + S   S  N++ L L GN         L+  + L+ L L++N L
Sbjct: 11   RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 775  SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS 834
               +   L +L  L+ + +  N+++     E     S++ L  ++NNIS    S      
Sbjct: 71   YETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGK- 122

Query: 835  IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG-SIPDWIDGLSQLSHLNLAHNN 893
             K ++L+ N +   L++      S +  LDL  N ++  +  +       L HLNL +N 
Sbjct: 123  -KNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 894  LEG---------------------EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 932
            +                        +  +      +  + L +N L  +  +   +  L 
Sbjct: 181  IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240

Query: 933  E------------------SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 974
                                     +  K      +    +      +     +  +++ 
Sbjct: 241  HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 975  YAYQGRVLSL----LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 1030
              +  R+++L     A L    ++    +  +  N  R + ++         I       
Sbjct: 301  APFADRLIALKRKEHALLSGQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 1031 RHIESLDLSYNKLSGKIP---RQLVDLNTLAIFIVAYNNLSGKIPE 1073
            +   +L+     L  ++    R   +L+      V    L     E
Sbjct: 360  QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  115 bits (290), Expect = 4e-27
 Identities = 55/360 (15%), Positives = 116/360 (32%), Gaps = 57/360 (15%)

Query: 753  EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
            EI Q+ ++    K   + +++L   +     +   ++ + +  N L      +      L
Sbjct: 4    EIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 813  QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 872
            ++L++S N +           +++ + L+ N +             S+ TL  + N ++ 
Sbjct: 61   ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 873  SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 928
             +           ++ LA+N +     +     +++Q LDL  N +  +  +        
Sbjct: 113  RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 929  -TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 987
               L+  YN                         I ++                 + L  
Sbjct: 171  LEHLNLQYN------------------------FIYDVKGQVV-----------FAKLKT 195

Query: 988  LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
            LDLS NKL   + P+  +   +  ++L +N L   I       +++E  DL  N      
Sbjct: 196  LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 1048 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMS 1107
             R         +  VA   +   +     +  T     + G      LP P    L  + 
Sbjct: 254  LRDFF-SKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  111 bits (280), Expect = 8e-26
 Identities = 66/500 (13%), Positives = 147/500 (29%), Gaps = 60/500 (12%)

Query: 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 262
             + N  ++  ++ + +                               + S      ++ 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQA----------------------------LASLRQSAWNVK 37

Query: 263 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 322
            L LS N L   I A +    + LE L+++ N +           L  L++LDL+     
Sbjct: 38  ELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLN----- 88

Query: 323 DGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIG 382
             N  +Q +   PS+ TLH  +NN      +          + + L ++ + +      G
Sbjct: 89  -NNY-VQELLVGPSIETLHAANNNI-----SRVSCSRGQGKKNIYLANNKITMLRDLDEG 141

Query: 383 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKY 442
                ++ L +   E++ V   +      +LEHL++++  I         +      LK 
Sbjct: 142 C-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI---YDVKGQV--VFAKLKT 195

Query: 443 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQL 502
           L LS      N    +       A +  + + NN L   +   L  + +L   D+  N  
Sbjct: 196 LDLSS-----NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

Query: 503 TGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSL 562
                         ++ +           + E     +          ++     +    
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 563 TPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLY 622
             + +   LS   +  + +   +   +Q   +E +    +      + +         L 
Sbjct: 310 LKRKEHALLSGQGSETERLECERE--NQARQREIDALKEQ-YRTVIDQVTLRKQAKITLE 366

Query: 623 LVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIP 682
               +L         +H  L          Q  +     +  P  +   I     +  + 
Sbjct: 367 QKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYEEMYVE 425

Query: 683 SSFGNVIFLQFLDLSNNKLT 702
                   ++  D+  +K T
Sbjct: 426 QQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  105 bits (263), Expect = 1e-23
 Identities = 75/543 (13%), Positives = 159/543 (29%), Gaps = 99/543 (18%)

Query: 280 FDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ----SMGSFP 335
             + +  +   + D+ +     S   +    +K LDLS      GN L Q     +  F 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLS------GNPLSQISAADLAPFT 58

Query: 336 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 395
            L  L+L SN     L  T +L + + L  L L+++ +                      
Sbjct: 59  KLELLNLSSNV----LYETLDLESLSTLRTLDLNNNYV---------------------- 92

Query: 396 CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSS 455
                    Q      S+E L      I+      ++        K + L+ + +    +
Sbjct: 93  ---------QELLVGPSIETLHAANNNIS------RVSCSRGQGKKNIYLANNKI----T 133

Query: 456 RILDQGLCPLAHLQELYIDNNDLRG-SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL 514
            + D      + +Q L +  N++   +     A++ +L  L++ +N +         V  
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVF 190

Query: 515 TSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSL 573
             ++ L LS+N    +    +     + +     +NN++               L+   L
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSA---AGVTWISLRNNKLVLIEKALRFSQ---NLEHFDL 244

Query: 574 SSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF- 632
             N     T   F      ++      +K +           T   +     + L  PF 
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 633 -RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 691
            RL     K    L    +  +                           +     N    
Sbjct: 305 DRLIALKRKEHALLSGQGSETE--------------------------RLECERENQARQ 338

Query: 692 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV 751
           + +D    +    + D + +       L     +L   + +   +   L   L +    +
Sbjct: 339 REIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397

Query: 752 GEIPQSLSKCSSLKGL-YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 810
            E+  +  + S L+ L  +        + +       ++   M ++     +  E  RL 
Sbjct: 398 -ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET-QLAEENARLK 455

Query: 811 SLQ 813
            L 
Sbjct: 456 KLN 458

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.6 bits (230), Expect = 1e-19
 Identities = 51/367 (13%), Positives = 108/367 (29%), Gaps = 26/367 (7%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGL------------SRLNNLKMLDLSGNAFNNN 126
                 L +LDL+ N +        +E L            SR    K + L+ N     
Sbjct: 76  LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135

Query: 127 VLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKS 186
                   S ++ L L  N ++     +   S   LE L++  N I         +KLK+
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195

Query: 187 LGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN- 245
           L LS           EF S   +  + +  N++  +   +    L     L+  DLRGN 
Sbjct: 196 LDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLI--EKA---LRFSQNLEHFDLRGNG 248

Query: 246 LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 305
               ++    ++   + ++          +  +  +  +            +++      
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTV---KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

Query: 306 RGLR-KLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLE 364
           R +  K K   L      +  +L     +      +      +       Q         
Sbjct: 306 RLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT--VIDQVTLRKQAKI 363

Query: 365 YLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIA 424
            L     +L   +     +       L  +  ++    + +     + L  +  R+  + 
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMY 423

Query: 425 LNTSFLQ 431
           +    +Q
Sbjct: 424 VEQQSVQ 430

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.3 bits (172), Expect = 2e-12
 Identities = 28/200 (14%), Positives = 65/200 (32%), Gaps = 47/200 (23%)

Query: 873  SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 928
            +I +     ++     +  ++L+  +         ++ LDLS N L  +  +        
Sbjct: 1    AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 929  TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 988
              L+ S N                         + E  +  +           LS L  L
Sbjct: 61   ELLNLSSN------------------------VLYETLDLES-----------LSTLRTL 85

Query: 989  DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 1048
            DL+ N +      ++     I+TL+ ++NN++          ++   + L+ NK++    
Sbjct: 86   DLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRD 137

Query: 1049 RQLVDLNTLAIFIVAYNNLS 1068
                  + +    +  N + 
Sbjct: 138  LDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 6/191 (3%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           L A        L+  + +  +  G                + +D     +   +     R
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLR 358

Query: 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEE-LDIGGNKIDKFMVSKGLSKLKSLGLSGT 192
             +  +L      L+         +  +L+  L     +I+    ++  S L+ L     
Sbjct: 359 KQAKITLEQKKKALD-EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK 417

Query: 193 GFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSIL 252
            ++  +  ++    N +   DM  ++   L   +   RL +L+    L L     N ++ 
Sbjct: 418 RYEEMYVEQQSVQNNAIRDWDMYQHKETQL--AEENARLKKLNGEADLALASA--NATLQ 473

Query: 253 SSVARLSSLTS 263
             V R  +L S
Sbjct: 474 ELVVREQNLAS 484

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  148 bits (375), Expect = 6e-38
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 6/298 (2%)

Query: 633 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 692
            +P       R LD+  N  +  +  +     P L    ++ N +    P +F N+  L+
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 693 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFV 751
            L L +N+L   IP  +     NL  L +S N +   +   +F  L NL+ L +  N  V
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 752 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 811
               ++ S  +SL+ L L   NL+      L +L GL  + +   ++       F RL  
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 812 LQILDISDNNISGSL-PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 870
           L++L+IS      ++ P+C Y L++  + ++   L   +      +   L  L+LSYN +
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260

Query: 871 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928
           +      +  L +L  + L    L    P     LN L++L++S N L  L  S F +
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  141 bits (358), Expect = 9e-36
 Identities = 67/379 (17%), Positives = 124/379 (32%), Gaps = 65/379 (17%)

Query: 694  LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVG 752
            +     +    +P+ +         L L  N +K  +    F+   +L  L L  N    
Sbjct: 16   VLCHRKRFV-AVPEGIP---TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA 70

Query: 753  EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
              P + +   +L+ L L +N L          L  L  + + +N +   +   F  L +L
Sbjct: 71   VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 813  QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 871
            + L++ DN++       F  L S++Q+ L K  L   +      +   L+ L L +  +N
Sbjct: 131  KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

Query: 872  GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 931
                     L +L  L ++H      +         L  L ++  NL  +      +   
Sbjct: 190  AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--- 246

Query: 932  HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 991
                                                              L  L  L+LS
Sbjct: 247  --------------------------------------------------LVYLRFLNLS 256

Query: 992  CNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 1050
             N +   I   +   L R+Q + L    L    P  F  L ++  L++S N+L+  +   
Sbjct: 257  YNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEES 314

Query: 1051 LVD-LNTLAIFIVAYNNLS 1068
            +   +  L   I+  N L+
Sbjct: 315  VFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  139 bits (353), Expect = 4e-35
 Identities = 71/307 (23%), Positives = 121/307 (39%), Gaps = 26/307 (8%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           LN   F  F  LE L+L+ N ++           + L NL+ L L  N      L     
Sbjct: 47  LNQDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLRTLGLRSNRLKLIPLGVFTG 102

Query: 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSG 191
           LS+L  L +S+N++   +       L +L+ L++G N +         GL+ L+ L L  
Sbjct: 103 LSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 192 TGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI 251
                +         + L VL +    I+ +          RL +LK L++      +++
Sbjct: 162 CNLT-SIPTEALSHLHGLIVLRLRHLNINAI--RDYS--FKRLYRLKVLEISHWPYLDTM 216

Query: 252 LSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 311
             +     +LTSL ++H  L  ++       L  L  L+++ N I  +E       L +L
Sbjct: 217 TPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIE-GSMLHELLRL 274

Query: 312 KSLDLSGVGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLT 367
           + + L       G +L      +F     L  L++  N  T    +    H+  NLE L 
Sbjct: 275 QEIQLV------GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV--FHSVGNLETLI 326

Query: 368 LDDSSLH 374
           LD + L 
Sbjct: 327 LDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  133 bits (337), Expect = 5e-33
 Identities = 73/387 (18%), Positives = 129/387 (33%), Gaps = 86/387 (22%)

Query: 662  DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 721
             I       ++  N +       F +   L+ L+L+ N ++  +         NL  L L
Sbjct: 29   GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87

Query: 722  SNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 780
             +N LK  I   +F+ L NL  L +  N  V  +        +LK L + +N+L   I  
Sbjct: 88   RSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YIS- 144

Query: 781  WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVH 839
                                     F  L+SL+ L +   N++         L  +  + 
Sbjct: 145  ----------------------HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182

Query: 840  LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 899
            L    ++  +++ +F     L  L++S+     ++         L+ L++ H NL   VP
Sbjct: 183  LRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP 240

Query: 900  IQLCR-LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 958
                R L  L+ L+LS N +  +  S                                  
Sbjct: 241  YLAVRHLVYLRFLNLSYNPISTIEGSMLHE------------------------------ 270

Query: 959  EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHN 1017
                                   L  L  + L   +L   + P     L  ++ LN+S N
Sbjct: 271  -----------------------LLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGN 306

Query: 1018 NLTGTIPLTFSNLRHIESLDLSYNKLS 1044
             LT      F ++ ++E+L L  N L+
Sbjct: 307  QLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (315), Expect = 3e-30
 Identities = 85/338 (25%), Positives = 138/338 (40%), Gaps = 50/338 (14%)

Query: 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR-----LSS 260
                +LD+  N I  L      +  +    L++L+L  N+     +S+V       L +
Sbjct: 31  PTETRLLDLGKNRIKTL----NQDEFASFPHLEELELNENI-----VSAVEPGAFNNLFN 81

Query: 261 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 320
           L +L L  N L+  I    F  LSNL +LDI++N+I  +     ++ L  LKSL++    
Sbjct: 82  LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSLEVG--- 136

Query: 321 IRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 376
               N L+  S  +F    SL  L LE  N T+  T    L +   L  L L    L+I+
Sbjct: 137 ---DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA--LSHLHGLIVLRL--RHLNIN 189

Query: 377 LLQSIGSIF---PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM---RFARIALNTSFL 430
            ++     F     LK L +S       ++        +L  L +       +       
Sbjct: 190 AIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLA-V- 244

Query: 431 QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT 490
                 +  L++L+LS + +    S I    L  L  LQE+ +    L    P+      
Sbjct: 245 ----RHLVYLRFLNLSYNPI----STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 491 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 528
            LR+L+VS NQLT ++  S    + ++E L L +N   
Sbjct: 297 YLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (307), Expect = 3e-29
 Identities = 64/321 (19%), Positives = 109/321 (33%), Gaps = 36/321 (11%)

Query: 604 IGEFPNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 659
           I         +   LE L L  + +     G F    ++   LR L + +N  +  IP+ 
Sbjct: 44  IKTLNQDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLGLRSNRLK-LIPLG 98

Query: 660 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 719
           +   L +L   +IS N +   +   F ++  L+ L++ +N L   I         +LE L
Sbjct: 99  VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQL 157

Query: 720 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 778
           +L   +L   I +   S L  L  L L   +       S  +   LK L +++      +
Sbjct: 158 TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 779 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 838
                    L  + +   +L     +    L  L+ L++S N IS               
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS--------------- 261

Query: 839 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 898
                     ++         L  + L    L    P    GL+ L  LN++ N L    
Sbjct: 262 ---------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312

Query: 899 PIQLCRLNQLQLLDLSDNNLH 919
                 +  L+ L L  N L 
Sbjct: 313 ESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (298), Expect = 4e-28
 Identities = 66/315 (20%), Positives = 118/315 (37%), Gaps = 28/315 (8%)

Query: 112 NLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNK 171
             ++LDL  N          A    L  L L++N +  +++    ++L +L  L +  N+
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 172 IDKF--MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 229
           +      V  GLS L  L +S            F    NL+ L++  N++  +       
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYI--SHRA- 147

Query: 230 RLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHNILQGSIDAKEFDSLS 284
             S L+ L++L L         L+S+     + L  L  L L H  +  +I    F  L 
Sbjct: 148 -FSGLNSLEQLTLEKCN-----LTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLY 200

Query: 285 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD-GNKLLQSMGSFPSLNTLHLE 343
            L+ L+I+     +        GL  L SL ++   +       ++ +     L  L+L 
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHL---VYLRFLNLS 256

Query: 344 SNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS 403
            N  +    +   LH    L+ + L    L   +          L+ L++SG ++   L 
Sbjct: 257 YNPISTIEGSM--LHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLE 312

Query: 404 GQGFPHFKSLEHLDM 418
              F    +LE L +
Sbjct: 313 ESVFHSVGNLETLIL 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (266), Expect = 5e-24
 Identities = 51/231 (22%), Positives = 88/231 (38%), Gaps = 23/231 (9%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA 132
            L   +F     L+SL++  N++   +        S LN+L+ L L      +    +L+
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHR----AFSGLNSLEQLTLEKCNLTSIPTEALS 173

Query: 133 RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFM--VSKGLSKLKSLGLS 190
            L  L  L L    +  +I       L  L+ L+I        M         L SL ++
Sbjct: 174 HLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232

Query: 191 GTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS 250
                             L  L++S N I  +     +  L  L +L+++ L G      
Sbjct: 233 HCNLT-AVPYLAVRHLVYLRFLNLSYNPISTI--EGSM--LHELLRLQEIQLVGGQ---- 283

Query: 251 ILSSVAR-----LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEI 296
            L+ V       L+ L  L++S N L  +++   F S+ NLE L ++ N +
Sbjct: 284 -LAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.0 bits (234), Expect = 5e-20
 Identities = 51/268 (19%), Positives = 94/268 (35%), Gaps = 60/268 (22%)

Query: 811  SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 869
              ++LD+  N I       F     ++++ L++N++   ++ G F N  +L TL L  N 
Sbjct: 33   ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 870  LNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928
            L   IP  +  GLS L+ L+++ N +   +      L  L+ L++ DN+L  +    F  
Sbjct: 92   LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 929  TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 988
                                                                 L+ L  L
Sbjct: 151  -----------------------------------------------------LNSLEQL 157

Query: 989  DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
             L    L   IP +   +L  +  L L H N+      +F  L  ++ L++S+      +
Sbjct: 158  TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 1048 PRQLVDLNTLAIFIVAYNNLSGKIPEWT 1075
                +    L    + + NL+  +P   
Sbjct: 217  TPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.6 bits (233), Expect = 5e-20
 Identities = 70/435 (16%), Positives = 140/435 (32%), Gaps = 124/435 (28%)

Query: 247 CNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 304
           C+     +V     +    L L  N ++ +++  EF S  +LEEL++N+N +  VE    
Sbjct: 18  CHRKRFVAVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVE-PGA 75

Query: 305 YRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLE 364
           +  L  L++L L        N+L              +    FT            +NL 
Sbjct: 76  FNNLFNLRTLGLRS------NRLKL------------IPLGVFT----------GLSNLT 107

Query: 365 YLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIA 424
            L + ++ +                           +L    F    +L+ L++    + 
Sbjct: 108 KLDISENKIV--------------------------ILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 425 -LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP 483
            ++          + SL+ L+L    L    + I  + L  L  L  L + + ++     
Sbjct: 142 YISHRAFS----GLNSLEQLTLEKCNL----TSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 484 WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKL 542
           +       L++L++S      +++ + L +  ++  L +++ +   +P        H   
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVP---YLAVRHLV- 248

Query: 543 KIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIK 602
                                    L+ L+LS N                     +S I 
Sbjct: 249 ------------------------YLRFLNLSYN--------------------PISTI- 263

Query: 603 MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 662
                   +L    +L+ + LV   LA            LR L+VS N     +   +  
Sbjct: 264 -----EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFH 317

Query: 663 ILPSLVYFNISMNAL 677
            + +L    +  N L
Sbjct: 318 SVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.6 bits (207), Expect = 9e-17
 Identities = 46/266 (17%), Positives = 86/266 (32%), Gaps = 60/266 (22%)

Query: 810  DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 869
               + +         ++P    P   + + L KN +   L +  F +   L  L+L+ N 
Sbjct: 11   AQDRAVLCHRKRFV-AVPEGI-PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI 67

Query: 870  LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGLIPSCFDN 928
            ++   P   + L  L  L L  N L+  +P+ +   L+ L  LD+S+N +  L+   F +
Sbjct: 68   VSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 929  TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 988
                                                                 L  L  L
Sbjct: 127  -----------------------------------------------------LYNLKSL 133

Query: 989  DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
            ++  N LV +I  +    L  ++ L L   NLT       S+L  +  L L +  ++   
Sbjct: 134  EVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192

Query: 1048 PRQLVDLNTLAIFIVAYNNLSGKIPE 1073
                  L  L +  +++      +  
Sbjct: 193  DYSFKRLYRLKVLEISHWPYLDTMTP 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  137 bits (347), Expect = 6e-35
 Identities = 62/323 (19%), Positives = 121/323 (37%), Gaps = 18/323 (5%)

Query: 612 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 671
           L+ +     +++   +    F     +    + +   N+  +  +P  + D    +   N
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 672 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 731
           ++   ++     +F     +Q L +  N +   +P H+      L  L L  N L   + 
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 732 SRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 790
             IF     L  L +  N+       +    +SL+ L L++N L+  +   L  +  L H
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFH 190

Query: 791 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK 850
             +  N L            +++ LD S N+I+         + +  + L  N L     
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLT---D 240

Query: 851 EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL 910
                N   LV +DLSYN L   +      + +L  L +++N L   + +    +  L++
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 911 LDLSDNNLHGLIPSCFDNTTLHE 933
           LDLS N+L  +  +      L  
Sbjct: 300 LDLSHNHLLHVERNQPQFDRLEN 322

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  134 bits (339), Expect = 6e-34
 Identities = 81/391 (20%), Positives = 147/391 (37%), Gaps = 62/391 (15%)

Query: 662  DILPSLVYFNISMNALDGSIPSSFGNVIF--LQFLDLSNNKLTGEIPDHLAMCCVNLEFL 719
            ++    V++++ ++     +   F ++     + +   N+ +  ++P  L      +E L
Sbjct: 16   NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 74

Query: 720  SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 778
            +L++  ++  I +  F+    ++ L +  N      P        L  L L  N+LS   
Sbjct: 75   NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 779  PRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPLSIKQ 837
                 N   L  + M  N+LE  I  + F    SLQ L +S N ++    S     S+  
Sbjct: 134  RGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLI--PSLFH 190

Query: 838  VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE 897
             ++S N+L       T     ++  LD S+N +N  +        +L+ L L HNNL  +
Sbjct: 191  ANVSYNLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-D 240

Query: 898  VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISG 953
                L     L  +DLS N L  ++   F        L+ S N   + +   +       
Sbjct: 241  TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP------ 293

Query: 954  PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 1013
                                        +  L  LDLS N L+ H+        R++ L 
Sbjct: 294  ----------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 1014 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
            L HN++  T+    S    +++L LS+N   
Sbjct: 325  LDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  128 bits (323), Expect = 6e-32
 Identities = 70/340 (20%), Positives = 133/340 (39%), Gaps = 39/340 (11%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           L A+L   F+Q+E L+L+   I            +  + ++ L +  NA           
Sbjct: 60  LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQN 115

Query: 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSG 191
           +  L  L L  N L  S+      +   L  L +  N +++      +  + L++L LS 
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 192 TGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLS------------RLSKLKK 239
                  D        +L   ++S N +  L +P  +E L                +L  
Sbjct: 175 NRLT-HVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI 230

Query: 240 LDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV 299
           L L+ N  N +  + +     L  + LS+N L+  I    F  +  LE L I++N +  V
Sbjct: 231 LKLQHN--NLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL--V 285

Query: 300 EVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHN 359
            ++   + +  LK LDLS   +     + ++   F  L  L+L+ N+       T +L  
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLL---HVERNQPQFDRLENLYLDHNSI-----VTLKLST 337

Query: 360 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVN 399
              L+ LTL  +    +   S+ ++F ++   ++   + +
Sbjct: 338 HHTLKNLTLSHNDWDCN---SLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  126 bits (319), Expect = 2e-31
 Identities = 79/428 (18%), Positives = 162/428 (37%), Gaps = 66/428 (15%)

Query: 110 LNNLKMLDLSGNAFNNNVLSSLA--RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDI 167
             +    D+  +    +V        L++ + +   ++ +   +    LDS R +E L++
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNL 76

Query: 168 GGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQG 227
              +I+                         D   F   + ++ L M  N I  L  P  
Sbjct: 77  NDLQIE-----------------------EIDTYAFAYAHTIQKLYMGFNAIRYL--PPH 111

Query: 228 LERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE 287
           +     +  L  L L  N  ++           LT+L +S+N L+  I+   F + ++L+
Sbjct: 112 V--FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ 168

Query: 288 ELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 347
            L ++ N + +V++S     +  L   ++S         LL ++    ++  L    N+ 
Sbjct: 169 NLQLSSNRLTHVDLS----LIPSLFHANVS-------YNLLSTLAIPIAVEELDASHNSI 217

Query: 348 TATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG 406
                          L  L L  ++L   + L +    +P L  + +S  E+   +    
Sbjct: 218 -----NVVRGPVNVELTILKLQHNNLTDTAWLLN----YPGLVEVDLSYNELE-KIMYHP 267

Query: 407 FPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA 466
           F   + LE L +   R+      L + G+ +P+LK L LS      N    +++      
Sbjct: 268 FVKMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSH-----NHLLHVERNQPQFD 318

Query: 467 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 526
            L+ LY+D+N +  +L   L+   +L+ L +S N    +   +   ++     +  ++ H
Sbjct: 319 RLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP-AVDDADQH 374

Query: 527 FRIPVSLE 534
            +I   LE
Sbjct: 375 CKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  126 bits (318), Expect = 3e-31
 Identities = 66/371 (17%), Positives = 133/371 (35%), Gaps = 41/371 (11%)

Query: 181 LSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKL 240
           L+  K +    +  +        DSF  +E+L+++  +I+ +         +    ++KL
Sbjct: 44  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEI--DTYA--FAYAHTIQKL 98

Query: 241 DLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVE 300
            +  N            +  LT L L  N L  S+    F +   L  L +++N ++ +E
Sbjct: 99  YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIE 157

Query: 301 VSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHN 359
               ++    L++L LS       N+L    +   PSL   ++  N  +        L  
Sbjct: 158 -DDTFQATTSLQNLQLSS------NRLTHVDLSLIPSLFHANVSYNLLS-------TLAI 203

Query: 360 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 419
              +E L    S   I++++    +   L  L +     N +       ++  L  +D+ 
Sbjct: 204 PIAVEELDA--SHNSINVVRG--PVNVELTILKLQH---NNLTDTAWLLNYPGLVEVDLS 256

Query: 420 FARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR 479
           +  +      +      M  L+ L +S      N    L+    P+  L+ L + +N L 
Sbjct: 257 YNEL---EKIMYHPFVKMQRLERLYISN-----NRLVALNLYGQPIPTLKVLDLSHNHLL 308

Query: 480 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH 539
             +         L  L +  N +  ++  S    L     L LS+N +          N 
Sbjct: 309 -HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLK---NLTLSHNDWDCNSLRALFRNV 363

Query: 540 SKLKIFDAKNN 550
           ++  + DA  +
Sbjct: 364 ARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  121 bits (306), Expect = 1e-29
 Identities = 74/462 (16%), Positives = 148/462 (32%), Gaps = 100/462 (21%)

Query: 458 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
           +D  L       +++ID         +      + +I+    + +   + ++ L     +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 518 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 577
           E L L++      +          ++      N I   +   H       L  L L  N 
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR-YL-PPHVFQNVPLLTVLVLERND 128

Query: 578 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIH 637
                                     +   P  +  N  KL  L + N++L         
Sbjct: 129 --------------------------LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 638 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 697
           +   L+ L +S+N    H+ +    ++PSL + N+S N L     S+    I ++ LD S
Sbjct: 163 ATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDAS 213

Query: 698 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 757
           +N +   +   +    V L  L L +N+L     + + +   L  + L  N     +   
Sbjct: 214 HNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 758 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 817
             K   L+ LY++NN L                           + +    + +L++LD+
Sbjct: 268 FVKMQRLERLYISNNRLVA-------------------------LNLYGQPIPTLKVLDL 302

Query: 818 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 877
           S N++   +                                 L  L L +N +  ++   
Sbjct: 303 SHNHLL-HVER------------------------NQPQFDRLENLYLDHNSIV-TLK-- 334

Query: 878 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 919
           +     L +L L+HN+ +      L     +    + D + H
Sbjct: 335 LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (301), Expect = 5e-29
 Identities = 62/319 (19%), Positives = 116/319 (36%), Gaps = 27/319 (8%)

Query: 754  IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 813
            I  +L        ++++              L   + +    + +             ++
Sbjct: 13   IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 814  ILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 872
            +L+++D  I       F    +I+++++  N +   L    F N   L  L L  N L+ 
Sbjct: 73   LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 873  SIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TT 930
            S+P  I     +L+ L++++NNLE            LQ L LS N L  +  S   +   
Sbjct: 131  SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 931  LHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 989
             + SYN  S+            S         I  +            +G V   L  L 
Sbjct: 191  ANVSYNLLSTLAIPIAVEELDASH------NSINVV------------RGPVNVELTILK 232

Query: 990  LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 1049
            L  N L       + N   +  ++LS+N L   +   F  ++ +E L +S N+L   +  
Sbjct: 233  LQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNL 289

Query: 1050 QLVDLNTLAIFIVAYNNLS 1068
                + TL +  +++N+L 
Sbjct: 290  YGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (297), Expect = 2e-28
 Identities = 61/336 (18%), Positives = 121/336 (36%), Gaps = 47/336 (13%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
                  + +    + +           L     +++L+L+          + A   +++
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGTGFKG 196
            LY+  N +   +      ++  L  L +  N +            KL +L +S    + 
Sbjct: 97  KLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE- 154

Query: 197 TFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN----------- 245
             +   F +  +L+ L +S N + ++        LS +  L   ++  N           
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNLLSTLAIPIAV 207

Query: 246 ----LCNNSILS-SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVE 300
                 +NSI          LT L L HN L          +   L E+D++ NE++ + 
Sbjct: 208 EELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAW--LLNYPGLVEVDLSYNELEKIM 264

Query: 301 VSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNF 360
               +  +++L+ L +S   +   N   Q +   P+L  L L  N+        +    F
Sbjct: 265 -YHPFVKMQRLERLYISNNRLVALNLYGQPI---PTLKVLDLSHNHLL---HVERNQPQF 317

Query: 361 TNLEYLTLDDSSLHISLLQSI-GSIFPSLKNLSMSG 395
             LE L LD +S     + ++  S   +LKNL++S 
Sbjct: 318 DRLENLYLDHNS-----IVTLKLSTHHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  106 bits (266), Expect = 2e-24
 Identities = 71/401 (17%), Positives = 140/401 (34%), Gaps = 81/401 (20%)

Query: 399 NGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRIL 458
             V  G       + + +  + + +         + +S   ++ L+L+   +      I 
Sbjct: 33  QDVYFGFEDITLNNQKIVTFKNSTM---RKLPAALLDSFRQVELLNLNDLQI----EEID 85

Query: 459 DQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 518
                    +Q+LY+  N +R   P    N   L +L +  N L+ S+      +   + 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144

Query: 519 ELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYG 578
            L +SNN+      +E                          +      L++L LSSN  
Sbjct: 145 TLSMSNNNLE---RIED------------------------DTFQATTSLQNLQLSSN-- 175

Query: 579 DSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHS 638
                              L+H+  +   P+        L    +  + L+      +  
Sbjct: 176 ------------------RLTHV-DLSLIPS--------LFHANVSYNLLST-----LAI 203

Query: 639 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 698
              +  LD S+N+    +    G +   L    +  N L  +  +   N   L  +DLS 
Sbjct: 204 PIAVEELDASHNSIN-VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSY 257

Query: 699 NKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL 758
           N+L  +I  H  +    LE L +SNN L   +      +  L+ L L  NH +  + ++ 
Sbjct: 258 NELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314

Query: 759 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 799
            +   L+ LYL++N++   +   L     L+++ +  N  +
Sbjct: 315 PQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (259), Expect = 1e-23
 Identities = 67/343 (19%), Positives = 119/343 (34%), Gaps = 48/343 (13%)

Query: 207 NNLEVLDMSGNEIDNL--VVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSL 264
           N           ID     V  G E ++ L+  K +  + +       + +     +  L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 265 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDG 324
           +L+   ++  ID   F     +++L +  N I  +      + +  L  L L        
Sbjct: 75  NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLE------R 126

Query: 325 NKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD---SSLHISL 377
           N L     G F   P L TL + +NN       T      T+L+ L L     + + +SL
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSSNRLTHVDLSL 184

Query: 378 LQSIGSIF------------PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL 425
           + S+                 +++ L  S   +N V           L  L ++   +  
Sbjct: 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTD 240

Query: 426 NTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWC 485
                     + P L  + LS + L     +I+      +  L+ LYI NN L  +L   
Sbjct: 241 TAWL-----LNYPGLVEVDLSYNEL----EKIMYHPFVKMQRLERLYISNNRLV-ALNLY 290

Query: 486 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 528
                +L++LD+S N L   +  +       +E L L +N   
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERN-QPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 7e-08
 Identities = 27/201 (13%), Positives = 62/201 (30%), Gaps = 39/201 (19%)

Query: 873  SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 928
             I   +        +++     +     +   LN  +++   ++ +  L  +  D+    
Sbjct: 12   CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 929  TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 988
              L+ +                          +I EI  +                +  L
Sbjct: 72   ELLNLNDL------------------------QIEEIDTYAFAY---------AHTIQKL 98

Query: 989  DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
             +  N +  ++PP +  N+  +  L L  N+L+      F N   + +L +S N L    
Sbjct: 99   YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157

Query: 1048 PRQLVDLNTLAIFIVAYNNLS 1068
                    +L    ++ N L+
Sbjct: 158  DDTFQATTSLQNLQLSSNRLT 178

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  134 bits (339), Expect = 2e-34
 Identities = 53/393 (13%), Positives = 104/393 (26%), Gaps = 81/393 (20%)

Query: 664  LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723
                       +                   D +         +       N +  + + 
Sbjct: 11   SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTG 65

Query: 724  NSLKGHIFS-RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL 782
             +LK         +      L L       + P    + S L+ + ++   L  ++P  +
Sbjct: 66   RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 783  GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 842
                GL+ + + +N L   +P     L+ L+ L I        LP               
Sbjct: 124  QQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASG----- 177

Query: 843  NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL 902
                            +L +L L +  +  S+P  I  L  L  L + ++ L   +   +
Sbjct: 178  ----------EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225

Query: 903  CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 962
              L +L+ LDL         P  F                                    
Sbjct: 226  HHLPKLEELDLRGCTALRNYPPIFGG---------------------------------- 251

Query: 963  LEIFEFTTKNIAYAYQGRVLSLLAGLDLS-CNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 1021
                                + L  L L  C+ L+  +P  I  LT+++ L+L       
Sbjct: 252  -------------------RAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 1022 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 1054
             +P   + L     + +  +  +     + V  
Sbjct: 292  RLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (307), Expect = 3e-30
 Identities = 56/329 (17%), Positives = 104/329 (31%), Gaps = 27/329 (8%)

Query: 636 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 695
            H       L    +         +          + +             N    Q   
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 696 LSNNKLTGEIPDHLAMCCV-NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI 754
            +   L     D L          L L +  L      + F L +L+ + ++    + E+
Sbjct: 63  RTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 755 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI---------VMPKNHLEGPIPVE 805
           P ++ + + L+ L L  N L   +P  + +L  L+ +          +P+         E
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 806 FCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD 864
              L +LQ L +    I  SLP+    L ++K + +  + L          +   L  LD
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKLEELD 235

Query: 865 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS 924
           L       + P    G + L  L L   +    +P+ + RL QL+ LDL        +PS
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 925 CFDN----TTLHESYNNNSSPDKPFKTSF 949
                     +    +  +  D+    + 
Sbjct: 296 LIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  112 bits (283), Expect = 4e-27
 Identities = 65/382 (17%), Positives = 108/382 (28%), Gaps = 85/382 (22%)

Query: 708  HLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 767
            H        E L    ++        +   +          H       S    ++ +  
Sbjct: 6    HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIE 61

Query: 768  YLNNNNLSGKIPRWLGNLK--GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 825
                  L       L +    G   + +    L    P +  RL  LQ + I    +   
Sbjct: 62   TRTGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 826  LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 885
            LP                              + L TL L+ N L  ++P  I  L++L 
Sbjct: 119  LPDTM------------------------QQFAGLETLTLARNPLR-ALPASIASLNRLR 153

Query: 886  HLNLAHNNLEGEVPIQLCR---------LNQLQLLDLSDNNLHGLIPSCFDN----TTLH 932
             L++       E+P  L           L  LQ L L    +  L P+   N     +L 
Sbjct: 154  ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLK 212

Query: 933  ESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 991
               +  S+          +I                              L  L  LDL 
Sbjct: 213  IRNSPLSALGP-------AIHH----------------------------LPKLEELDLR 237

Query: 992  CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 1051
                + + PP  G    ++ L L   +   T+PL    L  +E LDL       ++P  +
Sbjct: 238  GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 1052 VDLNTLAIFIVAYNNLSGKIPE 1073
              L    I +V   +L  ++ +
Sbjct: 298  AQLPANCIILV-PPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (276), Expect = 3e-26
 Identities = 56/361 (15%), Positives = 106/361 (29%), Gaps = 57/361 (15%)

Query: 480 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL-TSIEELR-LSNNHFRIPVSLEPLF 537
           GS      +++    L            S+ L      + + +   N       S     
Sbjct: 2   GSSHHHHHHSSGRENLYFQ--------GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA 53

Query: 538 NHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE 597
           N +  +I       +    +     T      +L L S                      
Sbjct: 54  NSNNPQIETRTGRALKATADLLEDATQP-GRVALELRSVP-------------------- 92

Query: 598 LSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQGH 655
                 + +FP+      + L+ + +    L     LP  +     L  L ++ N  +  
Sbjct: 93  ------LPQFPDQA-FRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLR-A 141

Query: 656 IPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF---------LQFLDLSNNKLTGEIP 706
           +P  I   L  L   +I        +P    +            LQ L L    +   +P
Sbjct: 142 LPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 707 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 766
             +A    NL+ L + N+ L   +   I  L  L  L L G   +   P      + LK 
Sbjct: 200 ASIANL-QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 767 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 826
           L L + +    +P  +  L  L+ + +        +P    +L +  I+ +  +  +   
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 827 P 827
            
Sbjct: 318 Q 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (266), Expect = 7e-25
 Identities = 48/328 (14%), Positives = 89/328 (27%), Gaps = 62/328 (18%)

Query: 751  VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 810
            +G         S  + LY   +         L   +   +    + H            +
Sbjct: 1    MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 811  SLQILDISDNNISGSLPSCFYPLSIKQV---HLSKNMLHGQLKE--GTFFNCSSLVTLDL 865
            + QI   +   +  +        +        L        L +     F  S L  + +
Sbjct: 57   NPQIETRTGRALK-ATADLLEDATQPGRVALELRSV----PLPQFPDQAFRLSHLQHMTI 111

Query: 866  SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC 925
                L   +PD +   + L  L LA N L   +P  +  LN+L+ L +        +P  
Sbjct: 112  DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 926  FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 985
              +T     +                                              L  L
Sbjct: 170  LASTDASGEHQG--------------------------------------------LVNL 185

Query: 986  AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 1045
              L L    +   +P  I NL  +++L + ++ L+  +     +L  +E LDL       
Sbjct: 186  QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 1046 KIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073
              P        L   I+   +    +P 
Sbjct: 244  NYPPIFGGRAPLKRLILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (258), Expect = 7e-24
 Identities = 58/345 (16%), Positives = 111/345 (32%), Gaps = 38/345 (11%)

Query: 439 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS 498
             + L   GST         D     L+  Q  Y  + +      W  AN+ + +I   +
Sbjct: 13  GRENLYFQGST---ALRPYHDV----LSQWQRHYNADRNRW-HSAWRQANSNNPQIETRT 64

Query: 499 FNQLTGSISSSPLVHLTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEINGEIN 557
              L  +              L L +    + P   +  F  S L+        +    +
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQHMTIDAAGLMELPD 121

Query: 558 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTK 617
                     L++L+L+ N       P  +   + L+E  +     + E P  L   +  
Sbjct: 122 TMQQFA---GLETLTLARN--PLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 618 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 677
            E   LVN                L+ L +     +  +P  I + L +L    I  + L
Sbjct: 177 GEHQGLVN----------------LQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPL 218

Query: 678 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL 737
             ++  +  ++  L+ LDL         P         L+ L L + S    +   I  L
Sbjct: 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 738 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL 782
             L  L L G   +  +P  +++  +   + +   +L  ++ +  
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (250), Expect = 8e-23
 Identities = 50/346 (14%), Positives = 111/346 (32%), Gaps = 53/346 (15%)

Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
            +  + LY   +         L+        D +        S+    +  + +    + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-----SAWRQANSNNPQIETRTG 65

Query: 525 NHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 583
              +     LE           + ++  +    +++  L+    L+ +++ +        
Sbjct: 66  RALKATADLLEDA-TQPGRVALELRSVPLPQFPDQAFRLS---HLQHMTIDAAG------ 115

Query: 584 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP--IHSHKR 641
                               + E P+  ++    LE L L  + L     LP  I S  R
Sbjct: 116 --------------------LMELPDT-MQQFAGLETLTLARNPLR---ALPASIASLNR 151

Query: 642 LRFLDVSNNNFQGHIPVEIGDI--------LPSLVYFNISMNALDGSIPSSFGNVIFLQF 693
           LR L +        +P  +           L +L    +    +  S+P+S  N+  L+ 
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210

Query: 694 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 753
           L + N+ L+  +   +      LE L L   +   +          L+ L+L+    +  
Sbjct: 211 LKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 754 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 799
           +P  + + + L+ L L       ++P  +  L     I++P +   
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.4 bits (238), Expect = 3e-21
 Identities = 64/326 (19%), Positives = 114/326 (34%), Gaps = 42/326 (12%)

Query: 85  LESLDLSWNNIAGCAENEGL-EGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLS 143
            E+L        G        + LS+       D +      +     A  ++ +    +
Sbjct: 14  RENLYFQ-----GSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRT 64

Query: 144 DNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKG-LSKLKSLGLSGTGFKGTFDVRE 202
              L+ + D+ E  +      L++    + +F      LS L+ + +   G     D   
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD--T 122

Query: 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN---------LCNNSILS 253
              F  LE L ++ N +  L  P     ++ L++L++L +R           L +     
Sbjct: 123 MQQFAGLETLTLARNPLRAL--P---ASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 254 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKS 313
               L +L SL L    ++ S+ A    +L NL+ L I ++ +    +      L KL+ 
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEE 233

Query: 314 LDLSGVGIRDGNKLLQ---SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 370
           LDL G        L       G    L  L L+  +   TL    ++H  T LE L L  
Sbjct: 234 LDLRGC-----TALRNYPPIFGGRAPLKRLILKDCSNLLTL--PLDIHRLTQLEKLDLRG 286

Query: 371 SSLHISLLQSIGSIFPSLKNLSMSGC 396
                 L   I  + P+   + +   
Sbjct: 287 CVNLSRLPSLIAQL-PANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.1 bits (232), Expect = 2e-20
 Identities = 71/383 (18%), Positives = 126/383 (32%), Gaps = 84/383 (21%)

Query: 130 SLARLSSLRSLYLSD-NRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLG 188
                S   +LY      L    D   L   +     D   N+          +  +   
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHD--VLSQWQRHYNADR--NRWHSAWRQANSNNPQIET 62

Query: 189 LSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCN 248
            +G   K T D+ E  +      L++    +     P   ++  RLS L+ + +      
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLPQF--P---DQAFRLSHLQHMTIDAA-GL 116

Query: 249 NSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN--------EIDNVE 300
             +  ++ + + L +L L+ N L+ ++      SL+ L EL I            + + +
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLR-AL-PASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 301 VSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNF 360
            S  ++GL  L+SL L   GIR          S P+                    + N 
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR----------SLPA-------------------SIANL 205

Query: 361 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 420
            NL+ L + +S L  +L  +I  + P L+ L + GC               +L +     
Sbjct: 206 QNLKSLKIRNSPLS-ALGPAIHHL-PKLEELDLRGC--------------TALRNY---- 245

Query: 421 ARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG 480
                      I G     LK L L       ++   L   +  L  L++L +       
Sbjct: 246 ---------PPIFG-GRAPLKRLILKDC----SNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 481 SLPWCLANTTSLRILDVSFNQLT 503
            LP  +A   +  I+ V  +   
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.5 bits (220), Expect = 6e-19
 Identities = 56/386 (14%), Positives = 104/386 (26%), Gaps = 70/386 (18%)

Query: 355 QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLE 414
              H+ +  E L    S+        +   +    N   +                 +  
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWH--------SAWRQANSN 56

Query: 415 HLDMRFARIALNTSFLQIIGE-SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 473
           +  +         +   ++ + + P    L L    L              L+HLQ + I
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTI 111

Query: 474 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 533
           D   L   LP  +     L  L ++ N L  ++ +S +  L  + EL +           
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRAC-------- 160

Query: 534 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 593
                  +L         +    + S        L+SL L                    
Sbjct: 161 ------PELTELP---EPL-ASTDASGEHQGLVNLQSLRLEWT----------------- 193

Query: 594 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNN 651
                     I   P   + N   L+ L + N  L+    L   IH   +L  LD+    
Sbjct: 194 ---------GIRSLPAS-IANLQNLKSLKIRNSPLSA---LGPAIHHLPKLEELDLRGCT 240

Query: 652 FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM 711
              + P   G     L    +   +   ++P     +  L+ LDL        +P  +A 
Sbjct: 241 ALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 712 CCVNLEFLSLSNNSLKGHIFSRIFSL 737
                  + +  +        R  + 
Sbjct: 300 -LPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.5 bits (215), Expect = 3e-18
 Identities = 45/283 (15%), Positives = 87/283 (30%), Gaps = 32/283 (11%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSS 136
                     +  +             L   +       L+L              RLS 
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSH 105

Query: 137 LRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKG-LSKLKSLGLSG---- 191
           L+ + +    L   +    +     LE L +  N +     S   L++L+ L +      
Sbjct: 106 LQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163

Query: 192 ----TGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLC 247
                    T    E     NL+ L +    I +L  P     ++ L  LK L +R +  
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--P---ASIANLQNLKSLKIRNS-P 217

Query: 248 NNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND-NEIDNVEVSRGYR 306
            +++  ++  L  L  L L       +     F   + L+ L + D + +  + +     
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNL--LTLPLDIH 274

Query: 307 GLRKLKSLDLSGVGIRDGNKLLQ----SMGSFPSLNTLHLESN 345
            L +L+ LDL       G   L      +   P+   + +  +
Sbjct: 275 RLTQLEKLDLR------GCVNLSRLPSLIAQLPANCIILVPPH 311

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  131 bits (332), Expect = 1e-33
 Identities = 63/300 (21%), Positives = 118/300 (39%), Gaps = 19/300 (6%)

Query: 659 EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 718
           EI           ++ ++L  ++ S   +   ++ LDLS N L+ +I          LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 719 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 778
           L+LS+N L       + SL  LR L L  N+      Q L    S++ L+  NNN+S ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 779 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG-SLPSCFYPL-SIK 836
                  +G ++I +  N +     ++      +Q LD+  N I   +         +++
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 837 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 896
            ++L  N ++  +K       + L TLDLS N L   +       + ++ ++L +N L  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 897 EVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ 955
            +   L     L+  DL  N  H   +   F      ++    +      +     + P 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  121 bits (305), Expect = 4e-30
 Identities = 62/286 (21%), Positives = 106/286 (37%), Gaps = 29/286 (10%)

Query: 110 LNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGG 169
            N  K+  ++ ++    + S      +++ L LS N L   I   +L     LE L++  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 170 NKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 229
           N + + +  + LS L++L L+    +      E     ++E L  + N I  +       
Sbjct: 68  NVLYETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISRV------- 114

Query: 230 RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEEL 289
             SR    K + L  N             S +  L L  N +     A+   S   LE L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 290 DINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ---SMGSFPSLNTLHLESNN 346
           ++  N I +V+         KLK+LDLS       NKL        S   +  + L +N 
Sbjct: 175 NLQYNFIYDVKGQ---VVFAKLKTLDLS------SNKLAFMGPEFQSAAGVTWISLRNNK 225

Query: 347 FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 392
                   + L    NLE+  L  +  H   L+   S    ++ ++
Sbjct: 226 LV---LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  120 bits (304), Expect = 6e-30
 Identities = 65/307 (21%), Positives = 113/307 (36%), Gaps = 39/307 (12%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
             ASL      ++ LDLS N ++  +  +    L+    L++L+LS N         L  
Sbjct: 25  ALASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLES 78

Query: 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTG 193
           LS+LR+L L++N ++      EL     +E L    N I +   S+     K++ L+   
Sbjct: 79  LSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISRVSCSR-GQGKKNIYLANNK 131

Query: 194 FKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI-- 251
                   +    + ++ LD+  NEID +   +       L  L       NL  N I  
Sbjct: 132 IT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL-------NLQYNFIYD 183

Query: 252 LSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 311
           +      + L +L LS N L   +   EF S + +  + + +N++  V + +  R  + L
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKL--VLIEKALRFSQNL 239

Query: 312 KSLDLSGVGIRDGNKL--LQSMGSFPSLNTLHLESNNFTATLTTTQELH----NFTNLEY 365
           +  DL       GN          F     +   +      LT   E         +   
Sbjct: 240 EHFDLR------GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

Query: 366 LTLDDSS 372
              +D  
Sbjct: 294 YCCEDLP 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (299), Expect = 2e-29
 Identities = 56/365 (15%), Positives = 116/365 (31%), Gaps = 57/365 (15%)

Query: 753  EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
            EI Q+ +     K   + +++L   +     +   ++ + +  N L      +      L
Sbjct: 4    EIKQNGN---RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 813  QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 872
            ++L++S N +           +++ + L+ N +             S+ TL  + N ++ 
Sbjct: 61   ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 873  SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 928
             +           ++ LA+N +     +     +++Q LDL  N +  +  +        
Sbjct: 113  RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 929  -TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 987
               L+  YN                         I ++                 + L  
Sbjct: 171  LEHLNLQYN------------------------FIYDVKGQVV-----------FAKLKT 195

Query: 988  LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
            LDLS NKL   + P+  +   +  ++L +N L   I       +++E  DL  N      
Sbjct: 196  LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 1048 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMS 1107
             R         +  VA   +  K+     +  T     + G      LP P    L  + 
Sbjct: 254  LRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALG 311

Query: 1108 EASTS 1112
                 
Sbjct: 312  HHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  111 bits (280), Expect = 7e-27
 Identities = 50/292 (17%), Positives = 108/292 (36%), Gaps = 34/292 (11%)

Query: 83  QQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYL 142
            + +   ++ +++     +          N+K LDLSGN  +    + LA  + L  L L
Sbjct: 10  NRYKIEKVTDSSLKQALASL----RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 143 SDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVRE 202
           S N L    +  +L+SL  L  LD+  N + +         +++L  +            
Sbjct: 66  SSNVLY---ETLDLESLSTLRTLDLNNNYVQEL---LVGPSIETLHAANNNIS----RVS 115

Query: 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN-LCNNSILSSVARLSSL 261
                  + + ++ N+I  L            S+++ LDL+ N +   +     A   +L
Sbjct: 116 CSRGQGKKNIYLANNKITML--RDLD--EGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 262 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGI 321
             L+L +N +   +  +     + L+ LD++ N++    +   ++    +  + L     
Sbjct: 172 EHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLR---- 222

Query: 322 RDGNKLL---QSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 370
              NKL+   +++    +L    L  N F    T          ++ +    
Sbjct: 223 --NNKLVLIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQT 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  110 bits (278), Expect = 1e-26
 Identities = 57/351 (16%), Positives = 119/351 (33%), Gaps = 72/351 (20%)

Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
               +   + ++ L+ +L     +  +++ LD+S N L+  IS++ L   T +E L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 525 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 584
           N          L + S L+  D  NN +         L     +++L  ++N        
Sbjct: 68  NVLY---ETLDLESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANN-------- 109

Query: 585 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 644
                        +S +                                      +  + 
Sbjct: 110 ------------NISRV---------------------------------SCSRGQGKKN 124

Query: 645 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTG 703
           + ++NN       ++ G     + Y ++ +N +D  +      +   L+ L+L  N +  
Sbjct: 125 IYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 704 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 763
           ++   +      L+ L LS+N L   +     S   + W+ L  N  V  I ++L    +
Sbjct: 183 DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238

Query: 764 LKGLYLNNNNLS-GKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 813
           L+   L  N    G +  +    + +Q +             E C + +L 
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (273), Expect = 7e-26
 Identities = 50/328 (15%), Positives = 107/328 (32%), Gaps = 49/328 (14%)

Query: 734  IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 793
              +    +   +  +     +        ++K L L+ N LS      L     L+ + +
Sbjct: 6    KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 794  PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 853
              N L   +      L +L+ LD+++N +   L       SI+ +H + N +  ++    
Sbjct: 66   SSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGP---SIETLHAANNNIS-RVSCSR 118

Query: 854  FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLD 912
                     + L+ N +           S++ +L+L  N ++           + L+ L+
Sbjct: 119  G---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 913  LSDNNLHGLIPSCFDN--TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTT 970
            L  N ++ +          TL  S N  +     F++                       
Sbjct: 176  LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQS----------------------- 212

Query: 971  KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSN 1029
                        + +  + L  NKLV  I   +     ++  +L  N    GT+   FS 
Sbjct: 213  -----------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 1030 LRHIESLDLSYNKLSGKIPRQLVDLNTL 1057
             + ++++     K       +   + TL
Sbjct: 261  NQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (267), Expect = 4e-25
 Identities = 61/404 (15%), Positives = 113/404 (27%), Gaps = 94/404 (23%)

Query: 488 NTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 547
           N    +I  V+ + L     +S      +++EL LS N       +              
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS---QISA------------ 51

Query: 548 KNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEF 607
                     +    T   +L+ L+LSSN                        +    + 
Sbjct: 52  ---------ADLAPFT---KLELLNLSSN-----------------------VLYETLDL 76

Query: 608 PNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 667
                E+ + L  L L N+ +       +     +  L  +NNN    +           
Sbjct: 77  -----ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSR---GQGK 122

Query: 668 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK 727
               ++ N +        G    +Q+LDL  N++       LA     LE L+L  N + 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 728 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 787
             +  ++     L+ L L  N     +       + +  + L NN L             
Sbjct: 183 -DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL----------- 228

Query: 788 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 847
                         I        +L+  D+  N         F+  + +   ++K  +  
Sbjct: 229 --------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK- 273

Query: 848 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 891
           +L       C+                  + D L  L H +  H
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (253), Expect = 2e-23
 Identities = 51/324 (15%), Positives = 104/324 (32%), Gaps = 56/324 (17%)

Query: 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 262
             + N  ++  ++ + +                               + S      ++ 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQA----------------------------LASLRQSAWNVK 37

Query: 263 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 322
            L LS N L   I A +    + LE L+++ N +           L  L++LDL+     
Sbjct: 38  ELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLN----- 88

Query: 323 DGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIG 382
             N  +Q +   PS+ TLH  +NN      +          + + L ++ + +      G
Sbjct: 89  -NNY-VQELLVGPSIETLHAANNNI-----SRVSCSRGQGKKNIYLANNKITMLRDLDEG 141

Query: 383 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKY 442
                ++ L +   E++ V   +      +LEHL++++  I         +      LK 
Sbjct: 142 C-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI---YDVKGQV--VFAKLKT 195

Query: 443 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQL 502
           L LS      N    +       A +  + + NN L   +   L  + +L   D+  N  
Sbjct: 196 LDLSS-----NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

Query: 503 TGSISSSPLVHLTSIEELRLSNNH 526
                         ++ +      
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.1 bits (245), Expect = 3e-22
 Identities = 60/330 (18%), Positives = 118/330 (35%), Gaps = 41/330 (12%)

Query: 158 SLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMS 215
           +    +   +  + + + + S  +    +K L LSG          +   F  LE+L++S
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 216 GNEIDNLVVPQGLERLSRLSKLKKLDLRGN---------------LCNNSILS-SVARLS 259
            N +           L  LS L+ LDL  N                 NN+I   S +R  
Sbjct: 67  SNVL------YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 260 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGV 319
              +++L++N +   +   +    S ++ LD+  NEID V  +        L+ L+L   
Sbjct: 121 GKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 320 GIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQ 379
            I D    ++    F  L TL L SN          E  +   + +++L ++ L   + +
Sbjct: 180 FIYD----VKGQVVFAKLKTLDLSSNKLA---FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 380 SIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPS 439
           ++     +L++  + G   +       F   + ++ +  +          L    E   +
Sbjct: 232 ALRF-SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ------TVKKLTGQNEEECT 284

Query: 440 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQ 469
           +  L   G+    +        L  L H  
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALGHHH 314

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.5 bits (220), Expect = 5e-19
 Identities = 54/307 (17%), Positives = 111/307 (36%), Gaps = 42/307 (13%)

Query: 280 FDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ----SMGSFP 335
             + +  +   + D+ +     S   +    +K LDLS      GN L Q     +  F 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLS------GNPLSQISAADLAPFT 58

Query: 336 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSI------------- 381
            L  L+L SN     L  T +L + + L  L L+++ +  + +  SI             
Sbjct: 59  KLELLNLSSNV----LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114

Query: 382 -GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSL 440
             S     KN+ ++  ++   L          +++LD++   I    +F ++   S  +L
Sbjct: 115 SCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA-SSDTL 171

Query: 441 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 500
           ++L+L       N    +   +   A L+ L + +N L   +     +   +  + +  N
Sbjct: 172 EHLNLQY-----NFIYDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 501 QLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESH 560
           +L   I  + L    ++E   L  N F      +    + +++    +  +     NE  
Sbjct: 225 KLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 561 SLTPKFQ 567
              P   
Sbjct: 283 CTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 39/208 (18%), Positives = 66/208 (31%), Gaps = 30/208 (14%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNN-NVLSSLARLSSLRSL 140
            Q  +++ L+ N I    + +        + ++ LDL  N  +  N     A   +L  L
Sbjct: 119 GQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 141 YLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS-KGLSKLKSLGLSGTGFKGTFD 199
            L  N +    DVK       L+ LD+  NK+       +  + +  + L          
Sbjct: 175 NLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL--VLI 229

Query: 200 VREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKK------------------LD 241
            +      NLE  D+ GN      +     +  R+  + K                  L 
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 242 LRGNLCNNSI-LSSVARLSSLTSLHLSH 268
             G  C   +      RL +L   H  H
Sbjct: 290 HYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.4 bits (173), Expect = 6e-13
 Identities = 49/278 (17%), Positives = 94/278 (33%), Gaps = 27/278 (9%)

Query: 358 HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 417
            N    +   + DSSL    L S+     ++K L +SG  ++ + +      F  LE L+
Sbjct: 7   QNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLN 64

Query: 418 MRFARIALNTSFLQIIGESMPSLKYLSLSG---STLGTNSS---------RILDQGLCPL 465
           +    +           ES+ +L+ L L+      L    S          I        
Sbjct: 65  LSSNVLYETLDL-----ESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
              + +Y+ NN +           + ++ LD+  N++     +       ++E L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 526 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 585
                  ++     +KLK  D  +N++     E  S      +  +SL +N    V   K
Sbjct: 180 FIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA---GVTWISLRNN--KLVLIEK 231

Query: 586 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 623
            L     L+  +L                N +++ +  
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 15/70 (21%), Positives = 28/70 (40%)

Query: 999  IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA 1058
            I     N  R +   ++ ++L   +     +  +++ LDLS N LS      L     L 
Sbjct: 2    IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 1059 IFIVAYNNLS 1068
            +  ++ N L 
Sbjct: 62   LLNLSSNVLY 71

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  132 bits (333), Expect = 1e-32
 Identities = 100/581 (17%), Positives = 177/581 (30%), Gaps = 138/581 (23%)

Query: 465  LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
               LQE    +++L   +P    N  S      ++++   +           +   RL +
Sbjct: 10   NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRD 67

Query: 525  NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPK-FQLKSLSLSSNYGDSVTF 583
               R            +    +  N  +        SL      L+SL  S N       
Sbjct: 68   CLDR------------QAHELELNNLGL-------SSLPELPPHLESLVASCN------- 101

Query: 584  PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 643
                                + E P         L+ L + N++L     LP      L 
Sbjct: 102  -------------------SLTELPELP----QSLKSLLVDNNNLKALSDLP----PLLE 134

Query: 644  FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 703
            +L VSNN  +  +P E+ +    L   ++  N+L   +P    +   L+F+   NN+L  
Sbjct: 135  YLGVSNNQLE-KLP-ELQN-SSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE- 186

Query: 704  EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 763
            E+P+        L  +   NNSLK  +        +L  ++   N    E    L     
Sbjct: 187  ELPELQN--LPFLTAIYADNNSLK-KLPD---LPLSLESIVAGNNIL--EELPELQNLPF 238

Query: 764  LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 823
            L  +Y +NN L   +P    +L+ L    +  N+L   +P     L  L + +   + +S
Sbjct: 239  LTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTD-LPELPQSLTFLDVSENIFSGLS 293

Query: 824  GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 883
               P+      +  ++ S N +             SL  L++S N L   +P       +
Sbjct: 294  ELPPN------LYYLNASSNEI-----RSLCDLPPSLEELNVSNNKLI-ELPALP---PR 338

Query: 884  LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 943
            L  L  + N+L  EVP        L+ L +  N L            L  + +    P+ 
Sbjct: 339  LERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394

Query: 944  PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 1003
            P                                        L  L +  N L    P   
Sbjct: 395  PQN--------------------------------------LKQLHVETNPLR-EFPDIP 415

Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
             ++     L ++   +             +E     ++   
Sbjct: 416  ESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  125 bits (315), Expect = 2e-30
 Identities = 91/496 (18%), Positives = 164/496 (33%), Gaps = 101/496 (20%)

Query: 425 LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW 484
              +  ++          L L+   L +              HL+ L    N L   LP 
Sbjct: 58  REMAVSRLRDCLDRQAHELELNNLGLSSLPELP--------PHLESLVASCNSLT-ELPE 108

Query: 485 CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI 544
              +  SL + + +   L+             +E L +SNN       L  L N S LKI
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE---KLPELQNSSFLKI 157

Query: 545 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMI 604
            D  NN +  ++ +         L+ ++  +N                    +L  +  +
Sbjct: 158 IDVDNNSLK-KLPDLPP-----SLEFIAAGNN--------------------QLEELPEL 191

Query: 605 GEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL 664
              P         L  +Y  N+SL     LP+     L  +   NN        E+ + L
Sbjct: 192 QNLPF--------LTAIYADNNSLKKLPDLPLS----LESIVAGNNIL--EELPELQN-L 236

Query: 665 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 724
           P L       N L  ++P    +   L+ L++ +N LT ++P+       +L FL +S N
Sbjct: 237 PFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQ----SLTFLDVSEN 287

Query: 725 SLKGHIFSRIFSL-RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 783
                  S +  L  NL +L    N     +        SL+ L ++NN L  ++P    
Sbjct: 288 IF-----SGLSELPPNLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPP 337

Query: 784 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 843
            L   + ++   NHL   +P       +L+ L +  N +    P     +   +++    
Sbjct: 338 RL---ERLIASFNHLAE-VPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLA 389

Query: 844 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 903
            +             +L  L +  N L    PD       +  L +    +         
Sbjct: 390 EV--------PELPQNLKQLHVETNPLR-EFPDIP---ESVEDLRMNSERVVDPYEFAHE 437

Query: 904 RLNQLQLLDLSDNNLH 919
             ++L+      ++ H
Sbjct: 438 TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (304), Expect = 6e-29
 Identities = 88/498 (17%), Positives = 166/498 (33%), Gaps = 103/498 (20%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLS---------RLNNLKMLDLSGNAFNNNVLSSL- 131
            +       +W+     A     E                   L+L+     N  LSSL 
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELN-----NLGLSSLP 87

Query: 132 ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSG 191
                L SL  S N L   +  +   SL+ L   +     +           L+ LG+S 
Sbjct: 88  ELPPHLESLVASCNSLT-ELP-ELPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSN 140

Query: 192 TGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI 251
              +    + E  + + L+++D+  N +  L              L+ +    N      
Sbjct: 141 NQLE---KLPELQNSSFLKIIDVDNNSLKKL--------PDLPPSLEFIAAGNN--QLEE 187

Query: 252 LSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 311
           L  +  L  LT+++  +N L+     K  D   +LE +   +N ++ +      + L  L
Sbjct: 188 LPELQNLPFLTAIYADNNSLK-----KLPDLPLSLESIVAGNNILEELP---ELQNLPFL 239

Query: 312 KSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS 371
            ++          N L       PSL  L++  N  T  L          +L +L + ++
Sbjct: 240 TTIYAD------NNLLKTLPDLPPSLEALNVRDNYLT-DLPE-----LPQSLTFLDVSEN 287

Query: 372 SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 431
                    +  + P+L  L+ S  E+  +          SLE L+       ++ + L 
Sbjct: 288 I-----FSGLSELPPNLYYLNASSNEIRSL-----CDLPPSLEELN-------VSNNKLI 330

Query: 432 IIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT- 490
            +    P L+ L  S      N    + +      +L++L+++ N LR   P    +   
Sbjct: 331 ELPALPPRLERLIASF-----NHLAEVPELPQ---NLKQLHVEYNPLR-EFPDIPESVED 381

Query: 491 ---------------SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 535
                          +L+ L V  N L       P     S+E+LR+++     P     
Sbjct: 382 LRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIP----ESVEDLRMNSERVVDPYEFAH 436

Query: 536 LFNHSKLKIFDAKNNEIN 553
                KL+    +++  +
Sbjct: 437 E-TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (298), Expect = 3e-28
 Identities = 116/559 (20%), Positives = 199/559 (35%), Gaps = 115/559 (20%)

Query: 512  VHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 570
            V  T ++E    +++   +PV      N      +    +E        +    +  +  
Sbjct: 8    VSNTFLQEPLRHSSNLTEMPVEA---ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 571  LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAG 630
            L    +               +  E EL+++  +   P         LE L    +SL  
Sbjct: 65   LRDCLD--------------RQAHELELNNLG-LSSLPELP----PHLESLVASCNSLT- 104

Query: 631  PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF 690
               LP    + L+ L V NNN +      + D+ P L Y  +S N L+  +P    N  F
Sbjct: 105  --ELP-ELPQSLKSLLVDNNNLK-----ALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSF 154

Query: 691  LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 750
            L+ +D+ NN L  ++PD       +LEF++  NN L+      + +L  L  +  + N  
Sbjct: 155  LKIIDVDNNSLK-KLPDLPP----SLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSL 207

Query: 751  VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 810
              ++P       SL+ +   NN L       L NL  L  I    N L+  +P       
Sbjct: 208  K-KLPDLPL---SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPDLPP--- 257

Query: 811  SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 870
            SL+ L++ DN ++  LP    P S+  + +S+N+    L E       +L  L+ S N +
Sbjct: 258  SLEALNVRDNYLT-DLPEL--PQSLTFLDVSENIFS-GLSE----LPPNLYYLNASSNEI 309

Query: 871  NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 930
              S+ D       L  LN+++N L  E+P       +L+ L  S N+L  +     +   
Sbjct: 310  R-SLCD---LPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEVPELPQNLKQ 361

Query: 931  LHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 989
            LH  YN     PD P                                            D
Sbjct: 362  LHVEYNPLREFPDIPESVE----------------------------------------D 381

Query: 990  LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 1049
            L  N  +  +P    NL   + L++  N L    P        +E L ++  ++      
Sbjct: 382  LRMNSHLAEVPELPQNL---KQLHVETNPLR-EFP---DIPESVEDLRMNSERVVDPYEF 434

Query: 1050 QLVDLNTLAIFIVAYNNLS 1068
                 + L   +  +++  
Sbjct: 435  AHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  109 bits (275), Expect = 3e-25
 Identities = 73/374 (19%), Positives = 124/374 (33%), Gaps = 75/374 (20%)

Query: 682  PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 741
            P +  N  FLQ     ++ LT E+P        +      + +  + +        R + 
Sbjct: 5    PRNVSN-TFLQEPLRHSSNLT-EMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 742  WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP 801
               L                     L LNN  LS  +P    +L   + +V   N L   
Sbjct: 62   VSRLRDC-----------LDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-E 105

Query: 802  IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 861
            +P     L SL + + +   +S   P       ++ + +S N L  +L E    N S L 
Sbjct: 106  LPELPQSLKSLLVDNNNLKALSDLPPL------LEYLGVSNNQLE-KLPE--LQNSSFLK 156

Query: 862  TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 921
             +D+  N L   +PD       L  +   +N LE E+P +L  L  L  +   +N+L  L
Sbjct: 157  IIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKL 210

Query: 922  IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 981
                    ++    N              +                              
Sbjct: 211  PDLPLSLESIVAGNNILEELP-------ELQN---------------------------- 235

Query: 982  LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041
            L  L  +    N L   +P    +L   + LN+  N LT  +P    +L  ++  +  ++
Sbjct: 236  LPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFS 290

Query: 1042 KLSGKIPRQLVDLN 1055
             LS ++P  L  LN
Sbjct: 291  GLS-ELPPNLYYLN 303

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (262), Expect = 1e-23
 Identities = 84/476 (17%), Positives = 156/476 (32%), Gaps = 105/476 (22%)

Query: 129 SSLARLSSLRSLYLSDNRLEGSIDVKELD------------SLRDLEELDIGGNKIDKFM 176
                + S    Y + +  E +      +              R   EL++    +    
Sbjct: 28  VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-- 85

Query: 177 VSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERL----- 231
           + +    L+SL  S        +     S  +L V + +   + +L  P  LE L     
Sbjct: 86  LPELPPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNN 141

Query: 232 --------SRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL 283
                      S LK +D+     NNS+        SL  +   +N L+   +  E  +L
Sbjct: 142 QLEKLPELQNSSFLKIIDVD----NNSLKKLPDLPPSLEFIAAGNNQLE---ELPELQNL 194

Query: 284 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL--LQSMGSFPSLNTLH 341
             L  +  ++N +  +           L+S+          N L  L  + + P L T++
Sbjct: 195 PFLTAIYADNNSLKKLPDL-----PLSLESIVAG------NNILEELPELQNLPFLTTIY 243

Query: 342 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV 401
            ++N                +LE L + D+      L  +  +  SL  L +S    +G+
Sbjct: 244 ADNNLLKTLPDL------PPSLEALNVRDNY-----LTDLPELPQSLTFLDVSENIFSGL 292

Query: 402 LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 461
                     +L +L+     I       + + +  PSL+ L++S      N    L   
Sbjct: 293 SE-----LPPNLYYLNASSNEI-------RSLCDLPPSLEELNVSN-----NKLIELPAL 335

Query: 462 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 521
                 L+ L    N L   +P    N   L+ L V +N L       P     S+E+LR
Sbjct: 336 PP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIP----ESVEDLR 383

Query: 522 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPK-FQLKSLSLSSN 576
           ++++   +P           LK    + N +                ++ L ++S 
Sbjct: 384 MNSHLAEVPELP------QNLKQLHVETNPLR-------EFPDIPESVEDLRMNSE 426

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.0 bits (242), Expect = 4e-21
 Identities = 62/345 (17%), Positives = 120/345 (34%), Gaps = 56/345 (16%)

Query: 733  RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 792
            R  S   L+  L   ++   E+P       S    Y   +      P   G  + +    
Sbjct: 6    RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 793  MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEG 852
            +             C       L++++  +S SLP     L  + +  S N L  +L E 
Sbjct: 65   LRD-----------CLDRQAHELELNNLGLS-SLPELPPHL--ESLVASCNSLT-ELPEL 109

Query: 853  TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD 912
               +  SL+  + +   L+   P        L +L +++N LE ++P +L   + L+++D
Sbjct: 110  -PQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIID 159

Query: 913  LSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFK----TSFSISGPQGSVEKKILEIFEF 968
            + +N+L  L         +    N      +       T+             + ++ + 
Sbjct: 160  VDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN------NSLKKLPDL 213

Query: 969  TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 1028
                            L  +    N L     P++ NL  + T+   +N L  T+P    
Sbjct: 214  -------------PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP 257

Query: 1029 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073
            +L   E+L++  N L+  +P     L  L +    ++ LS   P 
Sbjct: 258  SL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.4 bits (204), Expect = 2e-16
 Identities = 60/286 (20%), Positives = 94/286 (32%), Gaps = 57/286 (19%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSL-ARLS 135
            L      LE +    N +      E L  L  L  L  +        NN L  L     
Sbjct: 167 KLPDLPPSLEFIAAGNNQL------EELPELQNLPFLTAIYAD-----NNSLKKLPDLPL 215

Query: 136 SLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFK 195
           SL S+   +N LE   ++ EL +L  L  +    N +    +      L++L +      
Sbjct: 216 SLESIVAGNNILE---ELPELQNLPFLTTIYADNNLLKT--LPDLPPSLEALNVRDNYLT 270

Query: 196 GTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV 255
                   +   +L  LD+S N    L   +    L  L          N  +N I S  
Sbjct: 271 DL-----PELPQSLTFLDVSENIFSGL--SELPPNLYYL----------NASSNEIRSLC 313

Query: 256 ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLD 315
               SL  L++S+N L   + A        LE L  + N +  V         + LK L 
Sbjct: 314 DLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLAEVPEL-----PQNLKQLH 363

Query: 316 LSGVGIRD-------------GNKLLQSMGSFPSLNTLHLESNNFT 348
           +    +R+              + L +      +L  LH+E+N   
Sbjct: 364 VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.9 bits (182), Expect = 1e-13
 Identities = 58/293 (19%), Positives = 100/293 (34%), Gaps = 55/293 (18%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSL-ARLS 135
            L      LES+    N +      E L  L  L  L  +        NN+L +L     
Sbjct: 209 KLPDLPLSLESIVAGNNIL------EELPELQNLPFLTTIYAD-----NNLLKTLPDLPP 257

Query: 136 SLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFK 195
           SL +L + DN L    +     SL  L+  +   + + +         L  L  S    +
Sbjct: 258 SLEALNVRDNYLTDLPE--LPQSLTFLDVSENIFSGLSEL-----PPNLYYLNASSNEIR 310

Query: 196 GTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV 255
                   D   +LE L++S N++  L  P      +   +L++L    N      L+ V
Sbjct: 311 -----SLCDLPPSLEELNVSNNKLIEL--P------ALPPRLERLIASFNH-----LAEV 352

Query: 256 -ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSL 314
                +L  LH+ +N L+        D   ++E+L +N +  +  E+       + LK L
Sbjct: 353 PELPQNLKQLHVEYNPLR-EFP----DIPESVEDLRMNSHLAEVPEL------PQNLKQL 401

Query: 315 DLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLT 367
            +        N L +      S+  L + S           E  +    +   
Sbjct: 402 HVE------TNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFE 448

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  132 bits (333), Expect = 5e-32
 Identities = 97/534 (18%), Positives = 193/534 (36%), Gaps = 50/534 (9%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           ++   F     ++ L + +N I     +        +  L +L L  N  ++        
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTG 193
              L +L +S+N LE  I+     +   L+ L +  N++    +S  +  L    +S   
Sbjct: 146 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLS-LIPSLFHANVSYNL 203

Query: 194 FKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILS 253
                          +E LD S N I+ +       R     +L  L L+ N  N +  +
Sbjct: 204 LS------TLAIPIAVEELDASHNSINVV-------RGPVNVELTILKLQHN--NLTDTA 248

Query: 254 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKS 313
            +     L  + LS+N L+  I    F  +  LE L I++N +  V ++   + +  LK 
Sbjct: 249 WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKV 305

Query: 314 LDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL 373
           LDLS   +     + ++   F  L  L+L+ N+       T +L     L+ LTL  +  
Sbjct: 306 LDLSHNHLLH---VERNQPQFDRLENLYLDHNSI-----VTLKLSTHHTLKNLTLSHNDW 357

Query: 374 HISLLQSIGSIFPSLKNLSMSGCEVN---GVLSGQGFPHFKSLEHLDMRFARIALNTSFL 430
             +   S+ ++F ++   ++   + +         G    +S +    R  +    TS +
Sbjct: 358 DCN---SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV 414

Query: 431 QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT 490
           + +  +           S + + S  I  QG  PL   ++L  + N+LR       A   
Sbjct: 415 EKVQRAQGRCSATDTINS-VQSLSHYITQQGGVPLQGNEQLEAEVNELR-------AEVQ 466

Query: 491 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD--AK 548
            L    +   QL   + +    +L      +      R   +L  +F H K +      +
Sbjct: 467 QLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLA--RSSDNLNKVFTHLKERQAFKLRE 524

Query: 549 NNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIK 602
                 E +     T   + ++++L     +       L  +  LK  ++  ++
Sbjct: 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  131 bits (330), Expect = 1e-31
 Identities = 80/390 (20%), Positives = 144/390 (36%), Gaps = 60/390 (15%)

Query: 662  DILPSLVYFNISMNALDGSIPSSFGNVIF--LQFLDLSNNKLTGEIPDHLAMCCVNLEFL 719
            ++    V++++ ++     +   F ++     + +   N+ +  ++P  L      +E L
Sbjct: 22   NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 80

Query: 720  SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 778
            +L++  ++  I +  F+    ++ L +  N      P        L  L L  N+LS   
Sbjct: 81   NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 779  PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 838
                 N   L  + M  N+LE      F    SLQ L +S N ++    S    L     
Sbjct: 140  RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL--FHA 197

Query: 839  HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 898
            ++S N+L       T     ++  LD S+N +N  +        +L+ L L HNNL  + 
Sbjct: 198  NVSYNLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DT 247

Query: 899  PIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGP 954
               L     L  +DLS N L  ++   F        L+ S N   + +   +        
Sbjct: 248  A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP------- 299

Query: 955  QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 1014
                                       +  L  LDLS N L+ H+        R++ L L
Sbjct: 300  ---------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

Query: 1015 SHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
             HN++  T+    S    +++L LS+N   
Sbjct: 332  DHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  127 bits (320), Expect = 2e-30
 Identities = 91/669 (13%), Positives = 201/669 (30%), Gaps = 101/669 (15%)

Query: 110 LNNLKMLDLSGNAFNNNVLSSLA--RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDI 167
             +    D+  +    +V        L++ + +   ++ +   +    LDS R +E L++
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNL 82

Query: 168 GGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQG 227
              +I+                         D   F   + ++ L M  N I  L  P  
Sbjct: 83  NDLQIE-----------------------EIDTYAFAYAHTIQKLYMGFNAIRYL--PPH 117

Query: 228 LERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE 287
           +     +  L  L L  N  ++           LT+L +S+N L+  I+   F + ++L+
Sbjct: 118 V--FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ 174

Query: 288 ELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 347
            L ++ N + +V                               +   PSL   ++  N  
Sbjct: 175 NLQLSSNRLTHV------------------------------DLSLIPSLFHANVSYNLL 204

Query: 348 TATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 407
           +        L     +E L    S   I++++    +   L  L +     N +      
Sbjct: 205 S-------TLAIPIAVEELDA--SHNSINVVRG--PVNVELTILKLQH---NNLTDTAWL 250

Query: 408 PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 467
            ++  L  +D+ +  +      +      M  L+ L +S      N    L+    P+  
Sbjct: 251 LNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISN-----NRLVALNLYGQPIPT 302

Query: 468 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 527
           L+ L + +N L   +         L  L +  N +     +  L    +++ L LS+N +
Sbjct: 303 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV----TLKLSTHHTLKNLTLSHNDW 357

Query: 528 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 587
                     N ++  + D           + H          L    +    +      
Sbjct: 358 DCNSLRALFRNVARPAVDD----------ADQHCKIDYQLEHGLCCKESDKPYLDRLLQY 407

Query: 588 YHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK-RLRFLD 646
                + E                   +            L G  +L    ++ R     
Sbjct: 408 IALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

Query: 647 VSNNNFQGHIPVEI--GDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 704
           ++N   Q    ++    +I  +L  + +  + L  S  +       L+       + T  
Sbjct: 468 LTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQA 527

Query: 705 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 764
                       E L   N +L+  + ++      LR         V ++    ++    
Sbjct: 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDT 587

Query: 765 KGLYLNNNN 773
           + +  ++++
Sbjct: 588 RRVSHHHHH 596

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (309), Expect = 5e-29
 Identities = 100/592 (16%), Positives = 177/592 (29%), Gaps = 143/592 (24%)

Query: 458  LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
            +D  L       +++ID         +      + +I+    + +   + ++ L     +
Sbjct: 19   IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 518  EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 577
            E L L++                          EI+              ++ L +  N 
Sbjct: 78   ELLNLNDLQIE----------------------EIDTYAFAYAH-----TIQKLYMGFN- 109

Query: 578  GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIH 637
                                      I   P  + +N   L  L L              
Sbjct: 110  -------------------------AIRYLPPHVFQNVPLLTVLVL-------------- 130

Query: 638  SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 697
                        N+    +P  I    P L   ++S N L+     +F     LQ L LS
Sbjct: 131  ----------ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179

Query: 698  NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 757
            +N+LT  +   L     +L   ++S N L     S +     +  L    N     +   
Sbjct: 180  SNRLT-HVDLSL---IPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGP 229

Query: 758  LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 817
            +     L  L L +NNL+     WL N  GL  + +  N LE  +   F ++  L+ L I
Sbjct: 230  V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 818  SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 877
            S+N +  +L                                +L  LDLS+N+L   +   
Sbjct: 286  SNNRLV-ALN------------------------LYGQPIPTLKVLDLSHNHLL-HVERN 319

Query: 878  IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 937
                 +L +L L HN++     ++L   + L+ L LS N+       C     L  +   
Sbjct: 320  QPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD-----CNSLRALFRNVAR 371

Query: 938  NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 997
             +  D             G              K     Y  R+L  +A   +       
Sbjct: 372  PAVDDADQHCKIDYQLEHG-----------LCCKESDKPYLDRLLQYIALTSVVEK---- 416

Query: 998  HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 1049
             +    G  +   T+N   +            L+  E L+   N+L  ++ +
Sbjct: 417  -VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (296), Expect = 2e-27
 Identities = 60/320 (18%), Positives = 113/320 (35%), Gaps = 27/320 (8%)

Query: 753  EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
             I  +L        ++++              L   + +    + +             +
Sbjct: 18   CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 813  QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 871
            ++L+++D  I       F    +I+++++  N +   L    F N   L  L L  N L+
Sbjct: 78   ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

Query: 872  GSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-T 929
             S+P  I     +L+ L++++NNLE            LQ L LS N L  +  S   +  
Sbjct: 137  -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195

Query: 930  TLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 988
              + SYN  S+            S         I  +                   L  L
Sbjct: 196  HANVSYNLLSTLAIPIAVEELDASHNS------INVVRGPVNVE------------LTIL 237

Query: 989  DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 1048
             L  N L       + N   +  ++LS+N L   +   F  ++ +E L +S N+L   + 
Sbjct: 238  KLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 294

Query: 1049 RQLVDLNTLAIFIVAYNNLS 1068
                 + TL +  +++N+L 
Sbjct: 295  LYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (291), Expect = 8e-27
 Identities = 94/603 (15%), Positives = 199/603 (33%), Gaps = 74/603 (12%)

Query: 436  SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 495
            ++ + K ++   ST+     ++    L     ++ L +++  +     +  A   +++ L
Sbjct: 49   TLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL 104

Query: 496  DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 555
             + FN +   +      ++  +  L L  N     +      N  KL      NN +   
Sbjct: 105  YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE-R 161

Query: 556  INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 615
            I E  +      L++L LSSN                           +      L+ + 
Sbjct: 162  I-EDDTFQATTSLQNLQLSSN--------------------------RLTHVDLSLIPS- 193

Query: 616  TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 675
              L    +  + L+      +     +  LD S+N+    +    G +   L    +  N
Sbjct: 194  --LFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHN 242

Query: 676  ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF 735
             L  +  +   N   L  +DLS N+L  +I  H  +    LE L +SNN L   +     
Sbjct: 243  NL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 736  SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795
             +  L+ L L  NH +  + ++  +   L+ LYL++N++   +   L     L+++ +  
Sbjct: 299  PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSH 354

Query: 796  NHLEG-PIPVEFCRLDSLQILDISDNNISG----------SLPSCFYPLSIKQVHLSKNM 844
            N  +   +   F  +    + D   +                   +    ++ + L+  +
Sbjct: 355  NDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV 414

Query: 845  LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS-HLNLAHNNLEGEVPIQLC 903
               Q  +G      ++ ++    +Y+       + G  QL   +N     ++     Q+ 
Sbjct: 415  EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQ 474

Query: 904  RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK--- 960
            +   LQ L    +          D         N        + +F +   Q    +   
Sbjct: 475  QEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADA 534

Query: 961  KILEIFEFTTKNIAYAYQ-----GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLS 1015
            K  E  +   +NIA   Q      +   L     L   K+      +  N    +  +  
Sbjct: 535  KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHH 594

Query: 1016 HNN 1018
            H++
Sbjct: 595  HHH 597

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (257), Expect = 1e-22
 Identities = 77/378 (20%), Positives = 135/378 (35%), Gaps = 52/378 (13%)

Query: 207 NNLEVLDMSGNEIDNL--VVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSL 264
           N           ID     V  G E ++ L+  K +  + +       + +     +  L
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80

Query: 265 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDG 324
           +L+   ++  ID   F     +++L +  N I  +      + +  L  L L        
Sbjct: 81  NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLE------R 132

Query: 325 NKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQ 379
           N L     G F   P L TL + +NN       T      T+L+ L L  + L H+ L  
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSSNRLTHVDL-- 188

Query: 380 SIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPS 439
              S+ PSL + ++S   +             ++E LD     I        + G     
Sbjct: 189 ---SLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSIN------VVRGPVNVE 233

Query: 440 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSF 499
           L  L L  + L   +       L     L E+ +  N+L   +         L  L +S 
Sbjct: 234 LTILKLQHNNLTDTAW------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 500 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNHSKLKIFDAKNNEINGEINE 558
           N+L  +++      + +++ L LS+NH      +E       +L+     +N I      
Sbjct: 288 NRLV-ALNLY-GQPIPTLKVLDLSHNHLL---HVERNQPQFDRLENLYLDHNSI-----V 337

Query: 559 SHSLTPKFQLKSLSLSSN 576
           +  L+    LK+L+LS N
Sbjct: 338 TLKLSTHHTLKNLTLSHN 355

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  129 bits (325), Expect = 2e-31
 Identities = 98/474 (20%), Positives = 166/474 (35%), Gaps = 33/474 (6%)

Query: 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
                L I  N +       + + + LRIL +S N++   +  S       +E L LS+N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 526 HFRIPVSLEPLFNHSKLKIFDAKNNEIN--GEINESHSLTPKFQLKSLSLSSNYGDSVTF 583
                +S  P      LK  D   N  +      E  +++   QLK L LS+ + +  + 
Sbjct: 80  KLVK-ISCHPT---VNLKHLDLSFNAFDALPICKEFGNMS---QLKFLGLSTTHLEKSSV 132

Query: 584 PKFLYHQHELKEAELSHIKMIGEFPNWL---------LENNTKLEFLYLVNDSLAGPFRL 634
               +         L       E P  L         +   T  EF ++++ S+     L
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 635 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 694
            + + K +   +  +        ++    L +L   NI                  + + 
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 695 DLSNNKLTG----EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 750
            +SN KL G       D+       L    + ++              N+       +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 751 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEFCR 808
                   SK S    L  +NN L+  +    G+L  L+ +++  N L+    I     +
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 809 LDSLQILDISDNNISGSLP--SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT-LDL 865
           + SLQ LDIS N++S       C +  S+  +++S N     L +  F      +  LDL
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN----ILTDTIFRCLPPRIKVLDL 428

Query: 866 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 919
             N +  SIP  +  L  L  LN+A N L+        RL  LQ + L  N   
Sbjct: 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  120 bits (303), Expect = 1e-28
 Identities = 81/470 (17%), Positives = 164/470 (34%), Gaps = 43/470 (9%)

Query: 436 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 495
           S+  L+ L +S + +      +          L+ L + +N L   +      T +L+ L
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKF----NQELEYLDLSHNKLV-KISC--HPTVNLKHL 95

Query: 496 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 555
           D+SFN            +++ ++ L LS  H     S+ P+ + +  K+         GE
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGET-YGE 153

Query: 556 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYH-QHELKEAELSHIKMIGEFPNWLLEN 614
             +   L       + SL   +  +  F   L      +   ELS+IK + E        
Sbjct: 154 KEDPEGLQ---DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 615 NTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 674
           +   +       S      +    +  +R L +  +               ++ YF+IS 
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT--------------TVWYFSISN 256

Query: 675 NALDGSIPSSFGNVIF-----LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH 729
             L G +     +        L    + ++        ++     N+   + + +  +  
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 730 IFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG---NLK 786
                  +     L    N     + ++    + L+ L L  N L  ++ +       +K
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMK 374

Query: 787 GLQHIVMPKNHLEGPIPVEFC-RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNML 845
            LQ + + +N +        C    SL  L++S N ++ ++  C  P  IK + L  N +
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKI 433

Query: 846 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD-WIDGLSQLSHLNLAHNNL 894
              + +       +L  L+++ N L  S+PD   D L+ L  + L  N  
Sbjct: 434 K-SIPKQ-VVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  119 bits (301), Expect = 2e-28
 Identities = 105/541 (19%), Positives = 178/541 (32%), Gaps = 86/541 (15%)

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
              T L++S N +   +   +  SLS L  L I+ N I  +++S  ++  ++L+ LDLS 
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSH 78

Query: 319 VGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISL 377
                 NKL++ S     +L  L L  N F   L   +E  N + L++L L  + L  S 
Sbjct: 79  ------NKLVKISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 378 LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM 437
           +         L    +           +     +      +       N  F  I+  S+
Sbjct: 132 VLP----IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP-TNKEFHFILDVSV 186

Query: 438 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 497
            ++  L LS      N   +L+   C         +  N    +L        +L  ++ 
Sbjct: 187 KTVANLELS------NIKCVLEDNKCSYFLSILAKLQTNPKLSNL--------TLNNIET 232

Query: 498 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEIN 557
           ++N          LV  T++    +SN                             G+++
Sbjct: 233 TWNSFI---RILQLVWHTTVWYFSISNVKL-------------------------QGQLD 264

Query: 558 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTK 617
                     LK+LS+     D   FP                        +++ E  + 
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFP-----------------------QSYIYEIFSN 301

Query: 618 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 677
           +               L          LD SNN        E    L  L    + MN L
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQL 360

Query: 678 D--GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF 735
                I      +  LQ LD+S N ++ +          +L  L++S+N L   IF  + 
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL- 419

Query: 736 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795
               ++ L L  N     IP+ + K  +L+ L + +N L          L  LQ I +  
Sbjct: 420 -PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

Query: 796 N 796
           N
Sbjct: 478 N 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  115 bits (290), Expect = 5e-27
 Identities = 86/485 (17%), Positives = 173/485 (35%), Gaps = 48/485 (9%)

Query: 85  LESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSD 144
              L++S N I+    ++    +  L+ L++L +S N      +S       L  L LS 
Sbjct: 23  TTILNISQNYISELWTSD----ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 145 NRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSK---GLSKLKSLGLSGTGFKGTFDVR 201
           N+L   I         +L+ LD+  N  D   + K    +S+LK LGLS T  + +    
Sbjct: 79  NKLV-KIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---- 130

Query: 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 261
                 +L +  +     +     +  E L   +      L      N     +  +S  
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES---LHIVFPTNKEFHFILDVSVK 187

Query: 262 TSLHLSHNILQGSIDAKEFDSLSN---------------LEELDINDNEIDNVEVSRGYR 306
           T  +L  + ++  ++  +     +               L  ++   N    +     + 
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 307 GLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYL 366
            +      ++   G  D      S  S  +L+   + S+ F    +       F+N+   
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI--YEIFSNMNIK 305

Query: 367 TLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALN 426
               S   +  +    S      +L  S   +   +      H   LE L ++  ++   
Sbjct: 306 NFTVSGTRMVHMLCP-SKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLK-E 362

Query: 427 TSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCP-LAHLQELYIDNNDLRGSLPWC 485
            S +  +   M SL+ L +S +++    S    +G C     L  L + +N L  ++  C
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSV----SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 486 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 545
           L     +++LD+  N++  SI    +V L +++EL +++N  +  V        + L+  
Sbjct: 419 L--PPRIKVLDLHSNKIK-SIPKQ-VVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKI 473

Query: 546 DAKNN 550
               N
Sbjct: 474 WLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  113 bits (285), Expect = 3e-26
 Identities = 88/498 (17%), Positives = 155/498 (31%), Gaps = 79/498 (15%)

Query: 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV--ARLSS 260
             S + L +L +S N I  L     +       +L+ LDL  N      L  +      +
Sbjct: 41  ILSLSKLRILIISHNRIQYL--DISV--FKFNQELEYLDLSHNK-----LVKISCHPTVN 91

Query: 261 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 320
           L  L LS N        KEF ++S L+ L ++   ++          +  +  L++S V 
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIAHLNISKVL 144

Query: 321 IRDGNKLLQSM--GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTL---------- 368
           +  G    +          NT  L     T          +   +  L L          
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204

Query: 369 ---DDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL 425
                 S+   L  +      +L N+  +      +L              +++     L
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ-L 263

Query: 426 NTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWC 485
           +       G S+ +L    +     G   S I +      +++       +  R     C
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI----FSNMNIKNFTVSGTRMVHMLC 319

Query: 486 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKI 544
            +  +    LD S N LT         HLT +E L L  N  + +    E       L+ 
Sbjct: 320 PSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 545 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMI 604
            D   N ++ +  +      K  L SL++SSN      F                     
Sbjct: 379 LDISQNSVSYDEKKGDCSWTK-SLLSLNMSSNILTDTIFRCLP----------------- 420

Query: 605 GEFPNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEI 660
                       +++ L L ++ +        +L       L+ L+V++N  +  +P  I
Sbjct: 421 -----------PRIKVLDLHSNKIKSIPKQVVKLE-----ALQELNVASNQLK-SVPDGI 463

Query: 661 GDILPSLVYFNISMNALD 678
            D L SL    +  N  D
Sbjct: 464 FDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  113 bits (284), Expect = 3e-26
 Identities = 90/498 (18%), Positives = 165/498 (33%), Gaps = 66/498 (13%)

Query: 568  LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 627
               L++S NY   +     L     L+   +SH + I      + + N +LE+L L ++ 
Sbjct: 23   TTILNISQNYISELWTSDILSLSK-LRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK 80

Query: 628  LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGN 687
            L     +  H    L+ LD+S N F      +    +  L +  +S   L+ S      +
Sbjct: 81   LVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 688  VIFLQ-FLDLSNNKLTGEIPDHLAMCCV-NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 745
            +   +  L L       E P+ L      +L  +  +N      +   + ++ NL    +
Sbjct: 138  LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 746  EGNHFVGEIPQSLSKCSSL------KGLYLNNNNLSGKIPRWLGNLKG--------LQHI 791
            +      +    LS  + L        L LNN   +      +  L          + ++
Sbjct: 198  KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 792  VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS---IKQVHLSKNMLHGQ 848
             +               L +L I  +  +         +   S   IK   +S       
Sbjct: 258  KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT---RM 314

Query: 849  LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLN 906
            +        S  + LD S N L  ++ +    L++L  L L  N L+   ++     ++ 
Sbjct: 315  VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 907  QLQLLDLSDNNL-HGLIPSCFDN-TTLHESY-NNNSSPDKPFKTSFSISGPQGSVEKKIL 963
             LQ LD+S N++ +           +L     ++N   D  F                  
Sbjct: 375  SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF------------------ 416

Query: 964  EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 1023
                             +   +  LDL  NK+   IP Q+  L  +Q LN++ N L    
Sbjct: 417  ---------------RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460

Query: 1024 PLTFSNLRHIESLDLSYN 1041
               F  L  ++ + L  N
Sbjct: 461  DGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  111 bits (278), Expect = 2e-25
 Identities = 104/470 (22%), Positives = 174/470 (37%), Gaps = 63/470 (13%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLS--RLNNLKMLDLSGNAFNN-NVLS 129
           YL+ S+F   Q+LE LDLS N          L  +S     NLK LDLS NAF+   +  
Sbjct: 59  YLDISVFKFNQELEYLDLSHNK---------LVKISCHPTVNLKHLDLSFNAFDALPICK 109

Query: 130 SLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGL 189
               +S L+ L LS   LE    V  +  L   + L + G    +    +GL    +  L
Sbjct: 110 EFGNMSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168

Query: 190 SGT----GFKGTFDVREFDSFNNLEVLDMSGNEIDNLVV--PQGLERLSRLSKLKKLDLR 243
                              +  NLE+ ++     DN        L +L    KL  L L 
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228

Query: 244 GNLCNNSILSSV---ARLSSLTSLHLSHNILQGSIDAKEFD-SLSNLEELDINDNEIDNV 299
                 +    +      +++    +S+  LQG +D ++FD S ++L+ L I+    D  
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288

Query: 300 EV--SRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQEL 357
               S  Y     +   + +  G R     +           L   +N  T   T  +  
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTR--MVHMLCPSKISPFLHLDFSNNLLTD--TVFENC 344

Query: 358 HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 417
            + T LE L L  + L    L  I  +   +K+                      L+ LD
Sbjct: 345 GHLTELETLILQMNQL--KELSKIAEMTTQMKS----------------------LQQLD 380

Query: 418 MRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND 477
           +      ++    +       SL  L++S + L     R L         ++ L + +N 
Sbjct: 381 ISQNS--VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP------RIKVLDLHSNK 432

Query: 478 LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 527
           ++ S+P  +    +L+ L+V+ NQL  S+       LTS++++ L  N +
Sbjct: 433 IK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (270), Expect = 2e-24
 Identities = 76/400 (19%), Positives = 145/400 (36%), Gaps = 30/400 (7%)

Query: 693  FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 752
             +D S N L   +P  L+        L++S N +     S I SL  LR L++  N    
Sbjct: 4    LVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 753  EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDS 811
                       L+ L L++N L  KI         L+H+ +  N  +  PI  EF  +  
Sbjct: 60   LDISVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116

Query: 812  LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 871
            L+ L +S  ++  S       L+I +V L     +G+ ++          T  L   +  
Sbjct: 117  LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL--QDFNTESLHIVFPT 174

Query: 872  GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL----------------LDLSD 915
                 +I  +S  +  NL  +N++  +    C      L                ++ + 
Sbjct: 175  NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 916  NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 975
            N+   ++   +  T  + S +N     +     F  SG   S++   +            
Sbjct: 235  NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT--SLKALSIHQVVSDVFGFPQ 292

Query: 976  AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 1035
            +Y   + S +   + + +            ++    L+ S+N LT T+     +L  +E+
Sbjct: 293  SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 1036 LDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073
            L L  N+L    KI      + +L    ++ N++S    +
Sbjct: 353  LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (265), Expect = 9e-24
 Identities = 76/438 (17%), Positives = 153/438 (34%), Gaps = 50/438 (11%)

Query: 636  IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 695
            I S  +LR L +S+N  Q ++ + +      L Y ++S N L   I       + L+ LD
Sbjct: 41   ILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLD 96

Query: 696  LSNNKLT----GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR-WLLLEGNHF 750
            LS N        +   ++      L+FL LS   L+      I  L   +  L+L   + 
Sbjct: 97   LSFNAFDALPICKEFGNM----SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 751  VGEIPQSLSKC--SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH----------- 797
              E P+ L      SL  ++  N      +   +  +  L+   +               
Sbjct: 153  EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 798  LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK----EGT 853
            L            +L  ++ + N+    +    +  ++    +S   L GQL     + +
Sbjct: 213  LAKLQTNPKLSNLTLNNIETTWNSFI-RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271

Query: 854  FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 913
              +  +L    +  +          +  S ++  N   +       +   +++    LD 
Sbjct: 272  GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 914  SDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 969
            S+N L   +     +     TL    N      K  + +  +           L+  + +
Sbjct: 332  SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS---------LQQLDIS 382

Query: 970  TKNIAYAYQGRV---LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLT 1026
              +++Y  +         L  L++S N L   I   +    RI+ L+L  N +  +IP  
Sbjct: 383  QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQ 439

Query: 1027 FSNLRHIESLDLSYNKLS 1044
               L  ++ L+++ N+L 
Sbjct: 440  VVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.8 bits (207), Expect = 1e-16
 Identities = 53/326 (16%), Positives = 112/326 (34%), Gaps = 32/326 (9%)

Query: 61  LYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAEN--EGLEGLSRLNNLKMLDL 118
           L++    + E+ ++          LE  ++               L  L     L  L L
Sbjct: 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227

Query: 119 SGNAFNNNVLSSL---ARLSSLRSLYLSDNRLEGSIDVKELD----SLRDLEELDIGGNK 171
           +      N    +      +++    +S+ +L+G +D ++ D    SL+ L    +  + 
Sbjct: 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 172 --IDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 229
               +  + +  S +     + +G +    +      +    LD S N + + V     E
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTV----FE 342

Query: 230 RLSRLSKLKKLDLRGNLCNN--SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE 287
               L++L+ L L+ N       I     ++ SL  L +S N +       +     +L 
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402

Query: 288 ELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSF--PSLNTLHLES 344
            L+++ N + +           ++K LDL        NK+           +L  L++ S
Sbjct: 403 SLNMSSNILTDTIFR---CLPPRIKVLDLH------SNKIKSIPKQVVKLEALQELNVAS 453

Query: 345 NNFTATLTTTQELHNFTNLEYLTLDD 370
           N   +           T+L+ + L  
Sbjct: 454 NQLKSVPDGI--FDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.4 bits (201), Expect = 5e-16
 Identities = 44/234 (18%), Positives = 92/234 (39%), Gaps = 33/234 (14%)

Query: 61  LYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSG 120
           L + +  S  + +  + ++  F  +   + + +              S+++    LD S 
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC----PSKISPFLHLDFSN 333

Query: 121 NAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKG 180
           N   + V  +   L+ L +L L  N+L+          L  + E            ++  
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLK---------ELSKIAE------------MTTQ 372

Query: 181 LSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKL 240
           +  L+ L +S           +     +L  L+MS N + + +            ++K L
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL------PPRIKVL 426

Query: 241 DLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
           DL  N    SI   V +L +L  L+++ N L+ S+    FD L++L+++ ++ N
Sbjct: 427 DLHSNKI-KSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  123 bits (310), Expect = 1e-30
 Identities = 68/368 (18%), Positives = 112/368 (30%), Gaps = 84/368 (22%)

Query: 690  FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGN 748
             L+ +  S+  L  ++P  L     +   L L NN +   I    F  L+NL  L+L  N
Sbjct: 32   HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN 86

Query: 749  HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 808
                  P + +    L+ LYL+ N L  ++P  +                          
Sbjct: 87   KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM-------------------------- 119

Query: 809  LDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH-GQLKEGTFFNCSSLVTLDLS 866
              +LQ L + +N I+    S F  L  +  V L  N L    ++ G F     L  + ++
Sbjct: 120  PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 867  YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 926
               +  +IP        L+ L+L  N +       L  LN L  L LS N++  +     
Sbjct: 180  DTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 927  DN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL 982
             N      LH + N                                              
Sbjct: 237  ANTPHLRELHLNNNKLVKVPGGL----------------------------------ADH 262

Query: 983  SLLAGLDLSCNKL------VGHIPPQIGNLTRIQTLNLSHNNLTGTI--PLTFSNLRHIE 1034
              +  + L  N +          P           ++L  N +      P TF  +    
Sbjct: 263  KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322

Query: 1035 SLDLSYNK 1042
            ++ L   K
Sbjct: 323  AVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  122 bits (308), Expect = 2e-30
 Identities = 65/317 (20%), Positives = 118/317 (37%), Gaps = 57/317 (17%)

Query: 85  LESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSD 144
              LDL  N I    + +       L NL  L L  N  +     + A L  L  LYLS 
Sbjct: 54  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 145 NRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFD 204
           N+L+  +        + L+EL +  N+I    V K +                     F+
Sbjct: 110 NQLK-EL---PEKMPKTLQELRVHENEI--TKVRKSV---------------------FN 142

Query: 205 SFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR--LSSLT 262
             N + V+++  N + +  +  G      + KL  + +         ++++ +    SLT
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTN-----ITTIPQGLPPSLT 195

Query: 263 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 322
            LHL  N +   +DA     L+NL +L ++ N I  V+ +        L+ L L+     
Sbjct: 196 ELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLN----- 248

Query: 323 DGNKLLQSMGSF---PSLNTLHLESNNFTA----TLTTTQELHNFTNLEYLTLDDSSLHI 375
             NKL++  G       +  ++L +NN +A                +   ++L  + +  
Sbjct: 249 -NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 376 SLLQSIGSIFPSLKNLS 392
             +Q   S F  +   +
Sbjct: 308 WEIQP--STFRCVYVRA 322

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  119 bits (300), Expect = 2e-29
 Identities = 59/286 (20%), Positives = 106/286 (37%), Gaps = 22/286 (7%)

Query: 642 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 701
           LR +  S+   +  +P    D+ P     ++  N +       F N+  L  L L NNK+
Sbjct: 33  LRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 702 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 761
           + +I        V LE L LS N LK  +  ++   + L+ L +  N          +  
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGL 144

Query: 762 SSLKGLYLNNNNLSGKI--PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 819
           + +  + L  N L            +K L +I +   ++   IP       SL  L +  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDG 201

Query: 820 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 878
           N I+    +    L ++ ++ LS N +   +  G+  N   L  L L+ N L   +P  +
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

Query: 879 DGLSQLSHLNLAHNNLEG------EVPIQLCRLNQLQLLDLSDNNL 918
                +  + L +NN+          P    +      + L  N +
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (257), Expect = 9e-24
 Identities = 57/350 (16%), Positives = 110/350 (31%), Gaps = 80/350 (22%)

Query: 135 SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF 194
                L L +N++   I   +  +L++L  L +  NKI                      
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI---------------------- 88

Query: 195 KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSS 254
                   F     LE L +S N++  L  P+ +                          
Sbjct: 89  -SKISPGAFAPLVKLERLYLSKNQLKEL--PEKM-------------------------- 119

Query: 255 VARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY-RGLRKLKS 313
                +L  L +  N +   +    F+ L+ +  +++  N + +  +  G  +G++KL  
Sbjct: 120 ---PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 314 LDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD-- 370
           + ++         +     G  PSL  LHL+ N  T        L    NL  L L    
Sbjct: 176 IRIA------DTNITTIPQGLPPSLTELHLDGNKITK--VDAASLKGLNNLAKLGLSFNS 227

Query: 371 -SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM---RFARIALN 426
            S++    L +     P L+ L ++  ++  V    G    K ++ + +     + I  N
Sbjct: 228 ISAVDNGSLANT----PHLRELHLNNNKLVKVPG--GLADHKYIQVVYLHNNNISAIGSN 281

Query: 427 TSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 476
                       S   +SL  + +      I       +     + + N 
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWE--IQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (252), Expect = 4e-23
 Identities = 51/255 (20%), Positives = 91/255 (35%), Gaps = 27/255 (10%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           ++   F P  +LE L LS N +    E            L+ L +  N       S    
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKM-------PKTLQELRVHENEITKVRKSVFNG 143

Query: 134 LSSLRSLYLSDNRL-EGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGL-SKLKSLGLSG 191
           L+ +  + L  N L    I+      ++ L  + I    I    + +GL   L  L L G
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGLPPSLTELHLDG 201

Query: 192 TGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN-LCNNS 250
                  D       NNL  L +S N I  +    G   L+    L++L L  N L    
Sbjct: 202 NKIT-KVDAASLKGLNNLAKLGLSFNSISAV--DNGS--LANTPHLRELHLNNNKL--VK 254

Query: 251 ILSSVARLSSLTSLHLSHNILQGSIDAKEF------DSLSNLEELDINDNEIDNVEVSRG 304
           +   +A    +  ++L +N +  +I + +F         ++   + +  N +   E+   
Sbjct: 255 VPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 305 -YRGLRKLKSLDLSG 318
            +R +    ++ L  
Sbjct: 314 TFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (251), Expect = 6e-23
 Identities = 57/333 (17%), Positives = 115/333 (34%), Gaps = 67/333 (20%)

Query: 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 265
             +  +LD+  N+I               +++K  D +              L +L +L 
Sbjct: 51  PPDTALLDLQNNKI---------------TEIKDGDFKN-------------LKNLHTLI 82

Query: 266 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 325
           L +N +   I    F  L  LE L ++ N++  +         + L+ L +        N
Sbjct: 83  LINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEK----MPKTLQELRVH------EN 131

Query: 326 KLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI 381
           ++ +     F     +  + L +N   ++            L Y+ + D+  +I+ +   
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--NITTIPQ- 188

Query: 382 GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPS 439
             + PSL  L + G ++   +         +L  L + F  I+   N S       + P 
Sbjct: 189 -GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSL-----ANTPH 241

Query: 440 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG------SLPWCLANTTSLR 493
           L+ L L+      N    +  GL    ++Q +Y+ NN++          P       S  
Sbjct: 242 LRELHLNN-----NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 494 ILDVSFNQLT-GSISSSPLVHLTSIEELRLSNN 525
            + +  N +    I  S    +     ++L N 
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (251), Expect = 7e-23
 Identities = 62/338 (18%), Positives = 117/338 (34%), Gaps = 54/338 (15%)

Query: 247 CNNSILSSVARL--SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 304
           C++  L  V +        L L +N +   I   +F +L NL  L + +N+I  +     
Sbjct: 38  CSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKIS-PGA 95

Query: 305 YRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL 363
           +  L KL+ L LS       N+L +       +L  L +  N  T    +    +    +
Sbjct: 96  FAPLVKLERLYLSK------NQLKELPEKMPKTLQELRVHENEITKVRKSV--FNGLNQM 147

Query: 364 EYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI 423
             + L  + L  S +++    F  +K L                       ++ +    I
Sbjct: 148 IVVELGTNPLKSSGIEN--GAFQGMKKL----------------------SYIRIADTNI 183

Query: 424 ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP 483
                   I     PSL  L L G+ +    +++    L  L +L +L +  N +     
Sbjct: 184 T------TIPQGLPPSLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDN 233

Query: 484 WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVS----LEPLFN 538
             LANT  LR L ++ N+L   +    L     I+ + L NN+   I  +          
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 539 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 576
            +        +N +     +  +    +   ++ L + 
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.8 bits (226), Expect = 1e-19
 Identities = 61/266 (22%), Positives = 104/266 (39%), Gaps = 29/266 (10%)

Query: 811  SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 870
             L+++  SD  +   +P    P     + L  N +  ++K+G F N  +L TL L  N +
Sbjct: 32   HLRVVQCSDLGLE-KVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 871  NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-- 928
            +   P     L +L  L L+ N L+ E+P ++     LQ L + +N +  +  S F+   
Sbjct: 89   SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 929  --TTLHESYNNNSS---PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 983
                +    N   S    +  F+                L        NI       +  
Sbjct: 146  QMIVVELGTNPLKSSGIENGAFQGMKK------------LSYIRIADTNITTI-PQGLPP 192

Query: 984  LLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 1042
             L  L L  NK+   +       L  +  L LS N+++     + +N  H+  L L+ NK
Sbjct: 193  SLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 1043 LSGKIPRQLVDLNTLAIFIVAYNNLS 1068
            L  K+P  L D   + +  +  NN+S
Sbjct: 252  LV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.9 bits (221), Expect = 4e-19
 Identities = 64/317 (20%), Positives = 111/317 (35%), Gaps = 49/317 (15%)

Query: 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
                L + NN +         N  +L  L +  N+++  IS      L  +E L LS N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 526 HFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 584
             + +P   E +     L+      NEI  ++ +S       Q+  + L +N        
Sbjct: 111 QLKELP---EKMP--KTLQELRVHENEIT-KVRKS-VFNGLNQMIVVELGTN-------- 155

Query: 585 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 644
                   LK + +          N   +   KL ++ + + ++     +P      L  
Sbjct: 156 -------PLKSSGI---------ENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTE 196

Query: 645 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 704
           L +  N     +       L +L    +S N++      S  N   L+ L L+NNKL  +
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 705 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-------SLRNLRWLLLEGNHF-VGEIPQ 756
           +P  LA     ++ + L NN++   I S  F          +   + L  N     EI  
Sbjct: 255 VPGGLA-DHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 757 SLSKC-SSLKGLYLNNN 772
           S  +C      + L N 
Sbjct: 313 STFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.1 bits (219), Expect = 8e-19
 Identities = 28/204 (13%), Positives = 66/204 (32%), Gaps = 18/204 (8%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           +  S+F    Q+  ++L  N +       G      +  L  + ++        ++++ +
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTN-----ITTIPQ 188

Query: 134 --LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGL 189
               SL  L+L  N++   +D   L  L +L +L +  N I             L+ L L
Sbjct: 189 GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 190 SGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNL--VVPQGLERLSRLSKLKKLDLRGNLC 247
           +                  ++V+ +  N I  +           ++ +    + L  N  
Sbjct: 248 NNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 248 NNSILSSVA--RLSSLTSLHLSHN 269
               +       +    ++ L + 
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.7 bits (197), Expect = 5e-16
 Identities = 61/328 (18%), Positives = 111/328 (33%), Gaps = 58/328 (17%)

Query: 384 IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 443
           + P    L +   ++   +    F + K+L  L +   +I   +         +  L+ L
Sbjct: 50  LPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI---SKISPGAFAPLVKLERL 105

Query: 444 SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT 503
            LS      N  + L + +     LQEL +  N++             + ++++  N L 
Sbjct: 106 YLSK-----NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 504 GS-ISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 561
            S I +     +  +  +R+++ +   IP  L        L       N+I  ++ ++ S
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL---P--PSLTELHLDGNKIT-KV-DAAS 211

Query: 562 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFL 621
           L     L  L LS N                           I    N  L N   L  L
Sbjct: 212 LKGLNNLAKLGLSFN--------------------------SISAVDNGSLANTPHLREL 245

Query: 622 YLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQ-----GHIPVEIGDILPSLVYFNISM 674
           +L N+ L    ++P  +  HK ++ + + NNN          P        S    ++  
Sbjct: 246 HLNNNKLV---KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 675 NALDGSI--PSSFGNVIFLQFLDLSNNK 700
           N +      PS+F  V     + L N K
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 40/222 (18%), Positives = 65/222 (29%), Gaps = 63/222 (28%)

Query: 855  FNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 913
            F C   L  +  S   L   +P  +      + L+L +N +          L  L  L L
Sbjct: 27   FRCQCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 83

Query: 914  SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 973
             +N +  + P  F                                               
Sbjct: 84   INNKISKISPGAFAP--------------------------------------------- 98

Query: 974  AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 1033
                    L  L  L LS N+L   +P        +Q L +  N +T      F+ L  +
Sbjct: 99   --------LVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 1034 ESLDLSYNKL-SGKIPRQ-LVDLNTLAIFIVAYNNLSGKIPE 1073
              ++L  N L S  I       +  L+   +A  N++  IP+
Sbjct: 148  IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  126 bits (317), Expect = 1e-30
 Identities = 87/434 (20%), Positives = 142/434 (32%), Gaps = 71/434 (16%)

Query: 680  SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLR 738
             +P+       + ++DLS N +  E+ +       +L+FL +   +    I +  F  L 
Sbjct: 27   ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 739  NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL-SGKIPR-WLGNLKGLQHIVMPKN 796
            +L  L L+ N F+     + +  ++L+ L L   NL    +   +   L  L+ +V+  N
Sbjct: 80   SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 797  HLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPLSIKQV---HLSKNMLH------ 846
            +++   P   F  +    +LD++ N +             K      LS   L       
Sbjct: 140  NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 847  -GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 905
             G  K G  F  +S+ TLDLS N    S+          + +     +            
Sbjct: 200  LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN---SYNMGSSF 256

Query: 906  NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILE 964
                  D  +    GL  S     T   S +   +     F                   
Sbjct: 257  GHTNFKDPDNFTFKGLEAS--GVKTCDLSKSKIFALLKSVFSH----------------- 297

Query: 965  IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTI 1023
                              + L  L L+ N++   I       LT +  LNLS N L    
Sbjct: 298  -----------------FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSID 339

Query: 1024 PLTFSNLRHIESLDLSYNKLSGKIPRQLVD-LNTLAIFIVAYNNLSGKIPEWTAQFATFN 1082
               F NL  +E LDLSYN +   +  Q    L  L    +  N L   +P+    F    
Sbjct: 340  SRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGI--FDRLT 395

Query: 1083 KSSY---DGNPFLC 1093
                     NP+ C
Sbjct: 396  SLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  119 bits (299), Expect = 2e-28
 Identities = 83/396 (20%), Positives = 148/396 (37%), Gaps = 46/396 (11%)

Query: 161 DLEELDIGGNKIDKF--MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNE 218
            +  +D+  N I +        L  L+ L +             F   ++L +L +  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 219 IDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA--RLSSLTSLHLSHNILQGSID 276
              L    G    + L+ L+ L L     + ++LS      L+SL  L L  N ++    
Sbjct: 91  FLQL--ETGA--FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 277 AKEFDSLSNLEELDINDNEIDNVEVSRGYR-GLRKLKSLDLSGVGIRDGNKL---LQSMG 332
           A  F ++     LD+  N++ ++          +    L LS + ++D N+     +  G
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 333 SF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLK 389
           +     S+ TL L  N F       +        +  +L  S+ +        + F    
Sbjct: 207 NPFKNTSITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 390 NLSMSGCEVNGV------------LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE-- 435
           N +  G E +GV            L    F HF  LE L        L  + +  I +  
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT-------LAQNEINKIDDNA 318

Query: 436 --SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCL-ANTTSL 492
              +  L  L+LS + LG+  SR+ +     L  L+ L +  N +R +L         +L
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFEN----LDKLEVLDLSYNHIR-ALGDQSFLGLPNL 373

Query: 493 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 528
           + L +  NQL  S+       LTS++++ L  N + 
Sbjct: 374 KELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  109 bits (274), Expect = 3e-25
 Identities = 86/436 (19%), Positives = 152/436 (34%), Gaps = 63/436 (14%)

Query: 208 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-ARLSSLTSLHL 266
           ++  +D+S N I  L   +     SRL  L+ L +        I ++    LSSL  L L
Sbjct: 31  HVNYVDLSLNSIAEL--NETS--FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 267 SHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY-RGLRKLKSLDLSGVGIRDGN 325
            +N     ++   F+ L+NLE L +    +D   +S  + + L  L+ L L        N
Sbjct: 87  DYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD------N 139

Query: 326 KL--LQSMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQS 380
            +  +Q    F      + L L  N   +            N +        L    LQ 
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-----LLNFQGKHFTLLRLSSITLQD 194

Query: 381 IGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSL 440
           +     +   L    C               S+  LD+       + +       +   +
Sbjct: 195 M-----NEYWLGWEKCGN--------PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

Query: 441 KYLSLS-----GSTLGTNSSRILDQGLC---PLAHLQELYIDNNDLRGSLPWCLANTTSL 492
           + L LS     GS+ G  + +  D         + ++   +  + +   L    ++ T L
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301

Query: 493 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDAKNN 550
             L ++ N++   I  +    LT + +L LS N      S++  +F +  KL++ D   N
Sbjct: 302 EQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG---SIDSRMFENLDKLEVLDLSYN 357

Query: 551 EINGEINES--HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH------IK 602
            I   + +     L     LK L+L +N   SV           L++  L          
Sbjct: 358 HI-RALGDQSFLGLP---NLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCP 412

Query: 603 MIGEFPNWLLENNTKL 618
            I     WL +N+ K 
Sbjct: 413 RIDYLSRWLNKNSQKE 428

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  108 bits (271), Expect = 9e-25
 Identities = 81/434 (18%), Positives = 147/434 (33%), Gaps = 61/434 (14%)

Query: 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
           AH+  + +  N +        +    L+ L V        I ++    L+S+  L+L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 526 HFRIPVSLEP-LFNH-SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 583
            F     LE   FN  + L++       ++G +   +   P   L+ L L  N       
Sbjct: 90  QFL---QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN------- 139

Query: 584 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 643
                           +IK I   P     N  +   L L  +         + S     
Sbjct: 140 ----------------NIKKIQ--PASFFLNMRRFHVLDLTFN--------KVKSICEED 173

Query: 644 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 703
            L+    +F           L S+   +++   L      +      +  LDLS N    
Sbjct: 174 LLNFQGKHFTLL-------RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 704 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 763
            +           +  SL  +    + ++   S  +  +   +   F G       + S 
Sbjct: 227 SMAKRFFDAIAGTKIQSLILS----NSYNMGSSFGHTNFKDPDNFTFKG------LEASG 276

Query: 764 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 823
           +K   L+ + +   +     +   L+ + + +N +       F  L  L  L++S N + 
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336

Query: 824 GSLPSC-FYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DG 880
            S+ S  F  L  ++ + LS N +   L + +F    +L  L L  N L  S+PD I D 
Sbjct: 337 -SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDR 393

Query: 881 LSQLSHLNLAHNNL 894
           L+ L  + L  N  
Sbjct: 394 LTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 102/518 (19%), Positives = 161/518 (31%), Gaps = 141/518 (27%)

Query: 247 CNNSILSSVARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 305
           C N  L  V  L + +  + LS N +   ++   F  L +L+ L +       V  +  +
Sbjct: 17  CINRGLHQVPELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75

Query: 306 RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY 365
           RGL  L  L L        N+ L             LE+  F          +   NLE 
Sbjct: 76  RGLSSLIILKLDY------NQFL------------QLETGAF----------NGLANLEV 107

Query: 366 LTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM---RFAR 422
           LTL   +L  ++L                            F    SLE L +      +
Sbjct: 108 LTLTQCNLDGAVLS-------------------GNF-----FKPLTSLEMLVLRDNNIKK 143

Query: 423 IALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCP------LAHLQELYIDNN 476
           I   + F      +M     L L+ + + +     L            L+ +    ++  
Sbjct: 144 IQPASFF-----LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 477 DLRGSLPWCLANTTSLRILDVSFNQLTGSISS--SPLVHLTSIEELRLSNNHFRIPVSLE 534
            L           TS+  LD+S N    S++      +  T I+ L LSN++        
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY-------- 250

Query: 535 PLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELK 594
                         +       N +        +K+  LS +                  
Sbjct: 251 -------NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK----------------- 286

Query: 595 EAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQG 654
                    I      +  + T LE L L                        + N    
Sbjct: 287 ---------IFALLKSVFSHFTDLEQLTL------------------------AQNEIN- 312

Query: 655 HIPVEIGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTGEIPDHLAMCC 713
            I       L  L+  N+S N L GSI S  F N+  L+ LDLS N +   + D   +  
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGL 370

Query: 714 VNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 750
            NL+ L+L  N LK  +   IF  L +L+ + L  N +
Sbjct: 371 PNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 69/285 (24%), Positives = 123/285 (43%), Gaps = 37/285 (12%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEGLEGLS-------RLNNLKMLDLSGNAFNNNVL 128
           AS F   ++   LDL++N +      E L           RL+++ + D++         
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 129 SSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLG 188
            +  + +S+ +L LS N  + S+  +  D++   +   +  +       S G +  K   
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD-- 263

Query: 189 LSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCN 248
                FKG          + ++  D+S ++I  L   + +   S  + L++L L  N   
Sbjct: 264 PDNFTFKGL-------EASGVKTCDLSKSKIFAL--LKSV--FSHFTDLEQLTLAQN-EI 311

Query: 249 NSILSSV-ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG 307
           N I  +    L+ L  L+LS N L  SID++ F++L  LE LD++ N I  +   + + G
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALG-DQSFLG 369

Query: 308 LRKLKSLDLSGVGIRDGNKLLQSM--GSF---PSLNTLHLESNNF 347
           L  LK L L        N+ L+S+  G F    SL  + L +N +
Sbjct: 370 LPNLKELALD------TNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 407

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  126 bits (317), Expect = 4e-30
 Identities = 66/295 (22%), Positives = 119/295 (40%), Gaps = 35/295 (11%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
           F +    +L   ++            + LN++  +  + +   +  +  +  L ++  L+
Sbjct: 20  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVR 201
           L+ N+L    D+K L +L++L  L +  NKI      K L KLKSL L   G     D+ 
Sbjct: 72  LNGNKLT---DIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGIS---DIN 125

Query: 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 261
                  LE L +  N+I +      +  LSRL+KL  L L  N    S +  +A L+ L
Sbjct: 126 GLVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDN--QISDIVPLAGLTKL 177

Query: 262 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGI 321
            +L+LS N +    D +    L NL+ L++   E  N  ++     L    ++  +    
Sbjct: 178 QNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINH-QSNLVVPNTVKNT---- 229

Query: 322 RDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 376
            DG+ +   + S    +    E  N    L       +F   + +T+  +     
Sbjct: 230 -DGSLVTPEIIS----DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 279

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  122 bits (308), Expect = 7e-29
 Identities = 47/263 (17%), Positives = 97/263 (36%), Gaps = 25/263 (9%)

Query: 104 LEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLE 163
           +            +L   +  +    +   L+S+  +  +++ ++    V+ +  L ++ 
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVT 68

Query: 164 ELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLV 223
           +L + GNK+        L  L  L L     K   D+        L+ L +  N I +  
Sbjct: 69  KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGISD-- 123

Query: 224 VPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL 283
               +  L  L +L+ L L  N    + ++ ++RL+ L +L L  N +    D      L
Sbjct: 124 ----INGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQIS---DIVPLAGL 174

Query: 284 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLE 343
           + L+ L ++ N I ++       GL+ L  L+L        NK +    +    NT+   
Sbjct: 175 TKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECL--NKPINHQSNLVVPNTVKNT 229

Query: 344 SNNFTATLTTTQELHNFTNLEYL 366
             +   T     +  ++      
Sbjct: 230 DGSLV-TPEIISDDGDYEKPNVK 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  110 bits (276), Expect = 5e-25
 Identities = 53/221 (23%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
                 +  L L+ N +        ++ L+ L NL  L L  N   +  LSSL  L  L+
Sbjct: 61  IQYLPNVTKLFLNGNKL------TDIKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLK 112

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTF 198
           SL L  N +    D+  L  L  LE L +G NKI    V   L+KL +L L         
Sbjct: 113 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS--- 166

Query: 199 DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL 258
           D+        L+ L +S N I +      L  L+ L  L  L+L    C N  ++  + L
Sbjct: 167 DIVPLAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKPINHQSNL 220

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV 299
               ++  +   L       +                 + V
Sbjct: 221 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.1 bits (228), Expect = 4e-19
 Identities = 54/316 (17%), Positives = 103/316 (32%), Gaps = 65/316 (20%)

Query: 286 LEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESN 345
           + E       I  +          +    +L    + D      +     S++ +   ++
Sbjct: 1   MGETITVSTPIKQIF---PDDAFAETIKDNLKKKSVTD----AVTQNELNSIDQIIANNS 53

Query: 346 NFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQ 405
           +    + + Q +    N+  L L+           +  I P                   
Sbjct: 54  D----IKSVQGIQYLPNVTKLFLNG--------NKLTDIKP------------------- 82

Query: 406 GFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILD-QGLCP 464
              + K+L  L +   +I  + S L    + +  LK LSL       N   I D  GL  
Sbjct: 83  -LTNLKNLGWLFLDENKIK-DLSSL----KDLKKLKSLSLEH-----N--GISDINGLVH 129

Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
           L  L+ LY+ NN +       L+  T L  L +  NQ++      PL  LT ++ L LS 
Sbjct: 130 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSK 184

Query: 525 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 584
           NH      L  L     L + +  + E   +       +      ++  +     S+  P
Sbjct: 185 NHIS---DLRALAGLKNLDVLELFSQECLNKPIN--HQSNLVVPNTVKNTDG---SLVTP 236

Query: 585 KFLYHQHELKEAELSH 600
           + +    + ++  +  
Sbjct: 237 EIISDDGDYEKPNVKW 252

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.5 bits (216), Expect = 9e-18
 Identities = 54/321 (16%), Positives = 106/321 (33%), Gaps = 28/321 (8%)

Query: 659 EIGDI-----LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCC 713
            I  I         +  N+   ++  ++      +  +  +  +N+ +   +   +    
Sbjct: 10  PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYL- 64

Query: 714 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 773
            N+  L L+ N L       + +L+NL WL L+ N  + ++  SL     LK L L +N 
Sbjct: 65  PNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNG 120

Query: 774 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 833
           +S  I   L +L  L+ + +  N +         RL  L  L + DN IS  +       
Sbjct: 121 IS-DIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLT 175

Query: 834 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN 893
            ++ ++LSKN +   L+        +L  L+L          +    L   + +     +
Sbjct: 176 KLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

Query: 894 LEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG 953
           L     I      +        N    L     + + +             F    +   
Sbjct: 233 LVTPEIISDDGDYE------KPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286

Query: 954 PQGSVEKKILEIFEFTTKNIA 974
            +       ++     TK  A
Sbjct: 287 KEVYTVSYDVDGTVIKTKVEA 307

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.5 bits (198), Expect = 1e-15
 Identities = 46/294 (15%), Positives = 97/294 (32%), Gaps = 32/294 (10%)

Query: 406 GFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPL 465
               F      +++   +  +          + S+  +  + S +      +  QG+  L
Sbjct: 16  PDDAFAETIKDNLKKKSVT-DAVTQ----NELNSIDQIIANNSDI----KSV--QGIQYL 64

Query: 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
            ++ +L+++ N L    P  L N  +L  L +  N++   +S   L  L  ++ L L +N
Sbjct: 65  PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKDLKKLKSLSLEHN 119

Query: 526 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 585
                  +  L +  +L+     NN+I  +I     LT   +L +LSL  N    +    
Sbjct: 120 GIS---DINGLVHLPQLESLYLGNNKIT-DITVLSRLT---KLDTLSLEDNQISDIVP-- 170

Query: 586 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 645
            L    +L+   LS    I +     L     L+ L L +            +      +
Sbjct: 171 -LAGLTKLQNLYLSKNH-ISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 646 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 699
             ++ +      +            N+  +  + +   SF     +        
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKP---NVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.8 bits (178), Expect = 3e-13
 Identities = 50/334 (14%), Positives = 97/334 (29%), Gaps = 65/334 (19%)

Query: 764  LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 823
            +      +  +    P             + K  +   +      L+S+  +  ++++I 
Sbjct: 1    MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 824  GSLPSCFYPLSIKQVHLSKNMLHGQLKE-GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS 882
             S+    Y  ++ ++ L+ N    +L +     N  +L  L L  N +   +   +  L 
Sbjct: 57   -SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLK 109

Query: 883  QLSHLNLAHNN---LEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESY 935
            +L  L+L HN    + G     L  L QL+ L L +N +  +  +         TL    
Sbjct: 110  KLKSLSLEHNGISDING-----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162

Query: 936  NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 995
            N                        +I +I                L+ L  L LS N +
Sbjct: 163  N------------------------QISDIVPLAG-----------LTKLQNLYLSKNHI 187

Query: 996  VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 1055
               +   +  L  +  L L             SNL    ++  +   L    P  + D  
Sbjct: 188  S-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDG 243

Query: 1056 TLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGN 1089
                  V ++            +           
Sbjct: 244  DYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 4e-05
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSS 136
                  +L++L LS N+I        L  L+ L NL +L+L      N  ++  + L  
Sbjct: 169 VPLAGLTKLQNLYLSKNHI------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 137 LRSLYLSDNRLEGSIDVKELDSLRDLE 163
             ++  +D  L     + +        
Sbjct: 223 PNTVKNTDGSLVTPEIISDDGDYEKPN 249

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  118 bits (299), Expect = 2e-29
 Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 11/242 (4%)

Query: 692 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH- 749
             +  ++  LT  +P  +     +   L L +N L+  +   +F  L  L  L L  N  
Sbjct: 10  TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL 64

Query: 750 -FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FC 807
            F G   QS    +SLK L L+ N +   +      L+ L+H+    ++L+       F 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 808 RLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866
            L +L  LDIS  +   +    F  L S++ + ++ N          F    +L  LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 867 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 926
              L    P   + LS L  LN++HNN           LN LQ+LD S N++        
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

Query: 927 DN 928
            +
Sbjct: 244 QH 245

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  112 bits (282), Expect = 3e-27
 Identities = 54/282 (19%), Positives = 96/282 (34%), Gaps = 35/282 (12%)

Query: 643 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 702
             +  ++      +P     I  S     +  N L       F  +  L  L LS+N L+
Sbjct: 10  TEIRCNSKGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 703 -GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL-SK 760
                        +L++L LS N +   + S    L  L  L  + ++       S+   
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 761 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN-HLEGPIPVEFCRLDSLQILDISD 819
             +L  L +++ +           L  L+ + M  N   E  +P  F  L +L  LD+S 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 820 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID 879
             +                         QL    F + SSL  L++S+N           
Sbjct: 185 CQLE------------------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 880 GLSQLSHLNLAHNNLEGEVPIQLCR--LNQLQLLDLSDNNLH 919
            L+ L  L+ + N++      Q  +   + L  L+L+ N+  
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  111 bits (280), Expect = 5e-27
 Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           L   +F    QL  L LS N ++               +LK LDLS N     + S+   
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS--DFGTTSLKYLDLSFNGVIT-MSSNFLG 99

Query: 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSG 191
           L  L  L    + L+   +     SLR+L  LDI              GLS L+ L ++G
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 192 TGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI 251
             F+  F    F    NL  LD+S  +++ L         + LS L+ L++  N   +  
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQL--SPTA--FNSLSSLQVLNMSHNNFFSLD 215

Query: 252 LSSVARLSSLTSLHLSHNILQGSIDAKEFDSL-SNLEELDINDNEID 297
                 L+SL  L  S N +  +   +E     S+L  L++  N+  
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  109 bits (275), Expect = 3e-26
 Identities = 55/248 (22%), Positives = 88/248 (35%), Gaps = 22/248 (8%)

Query: 135 SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS----KGLSKLKSLGLS 190
           SS   L L  N+L+ S+     D L  L +L +  N +           G + LK L LS
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 191 GTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS 250
             G         F     LE LD   + +  +     +     L  L  LD+       +
Sbjct: 87  FNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSV--FLSLRNLIYLDISHTHTRVA 141

Query: 251 ILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRK 310
                  LSSL  L ++ N  Q +     F  L NL  LD++  +++ +     +  L  
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSS 200

Query: 311 LKSLDLSGVGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYL 366
           L+ L++S       N         +    SL  L    N+   T    +  H  ++L +L
Sbjct: 201 LQVLNMS------HNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFL 253

Query: 367 TLDDSSLH 374
            L  +   
Sbjct: 254 NLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  108 bits (272), Expect = 8e-26
 Identities = 67/270 (24%), Positives = 104/270 (38%), Gaps = 40/270 (14%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA--RLSSLRS 139
                 L+L  N +             +L  L  L LS N  +     S +    +SL+ 
Sbjct: 27  PSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 140 LYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFD 199
           L LS N +           L  LE LD   + +          ++    +          
Sbjct: 83  LDLSFNGVITMSSN--FLGLEQLEHLDFQHSNL---------KQMSEFSV---------- 121

Query: 200 VREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-ARL 258
              F S  NL  LD+S           G+   + LS L+ L + GN    + L  +   L
Sbjct: 122 ---FLSLRNLIYLDISHTHTRVA--FNGI--FNGLSSLEVLKMAGNSFQENFLPDIFTEL 174

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
            +LT L LS   L+  +    F+SLS+L+ L+++ N   +++ +  Y+ L  L+ LD S 
Sbjct: 175 RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSL 232

Query: 319 VGIRDGNK-LLQSMGSFPSLNTLHLESNNF 347
             I    K  LQ   S  SL  L+L  N+F
Sbjct: 233 NHIMTSKKQELQHFPS--SLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.4 bits (243), Expect = 4e-22
 Identities = 59/291 (20%), Positives = 98/291 (33%), Gaps = 65/291 (22%)

Query: 811  SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQ-LKEGTFFNCSSLVTLDLSYN 868
            S   L++  N +       F  L  + ++ LS N L  +     + F  +SL  LDLS+N
Sbjct: 29   SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 869  YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGLIPSCFD 927
             +  ++     GL QL HL+  H+NL+      +   L  L  LD+S  +        F+
Sbjct: 89   GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 928  NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 987
                                                                  LS L  
Sbjct: 148  G-----------------------------------------------------LSSLEV 154

Query: 988  LDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 1046
            L ++ N    +  P I   L  +  L+LS   L    P  F++L  ++ L++S+N     
Sbjct: 155  LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 1047 IPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKS----SYDGNPFLC 1093
                   LN+L +   + N++     +       F  S    +   N F C
Sbjct: 215  DTFPYKCLNSLQVLDYSLNHIM-TSKKQE--LQHFPSSLAFLNLTQNDFAC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.8 bits (218), Expect = 7e-19
 Identities = 59/246 (23%), Positives = 95/246 (38%), Gaps = 19/246 (7%)

Query: 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA--RLSSLTS 263
            ++   L++  N++ +L  P G+    +L++L KL L  N  +     S +    +SL  
Sbjct: 27  PSSATRLELESNKLQSL--PHGV--FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 264 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 323
           L LS N +        F  L  LE LD   + +  +     +  LR L  LD+S    R 
Sbjct: 83  LDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 324 -GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIG 382
             N +   +    SL  L +  N+F              NL +L L    L   L  +  
Sbjct: 141 AFNGIFNGL---SSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLE-QLSPTAF 195

Query: 383 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI-ALNTSFLQIIGESMPSLK 441
           +   SL+ L+MS      + +   +    SL+ LD     I       LQ       SL 
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHF---PSSLA 251

Query: 442 YLSLSG 447
           +L+L+ 
Sbjct: 252 FLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 46/236 (19%), Positives = 88/236 (37%), Gaps = 14/236 (5%)

Query: 568 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH--IKMIGEFPNWLLENNTKLEFLYLVN 625
              L L SN   S+          +L +  LS   +       +      T L++L L  
Sbjct: 30  ATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFK-GCCSQSDFGTTSLKYLDLSF 87

Query: 626 ---DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIP 682
               +++  F       ++L  LD  ++N +      +   L +L+Y +IS      +  
Sbjct: 88  NGVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 683 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLR 741
             F  +  L+ L ++ N         +     NL FL LS   L+  +    F+ L +L+
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 202

Query: 742 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL-KGLQHIVMPKN 796
            L +  N+F           +SL+ L  + N++     + L +    L  + + +N
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 46/271 (16%), Positives = 96/271 (35%), Gaps = 21/271 (7%)

Query: 360 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV-LSGQGFPHFKSLEHLDM 418
            ++   L L+ + L  SL   +      L  LS+S   ++      Q      SL++LD+
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 419 RFARI-ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGL-CPLAHLQELYIDNN 476
            F  +  ++++F       +  L++L    S L     ++ +  +   L +L  L I + 
Sbjct: 86  SFNGVITMSSNF-----LGLEQLEHLDFQHSNL----KQMSEFSVFLSLRNLIYLDISHT 136

Query: 477 DLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPL 536
             R +        +SL +L ++ N    +        L ++  L LS       +S    
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAF 195

Query: 537 FNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA 596
            + S L++ +  +N       ++        L+ L  S N+  +    +  +    L   
Sbjct: 196 NSLSSLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 597 ELSH-----IKMIGEFPNWLLENNTKLEFLY 622
            L+            F  W+ +    L  + 
Sbjct: 254 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 284

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 40/215 (18%), Positives = 62/215 (28%), Gaps = 58/215 (26%)

Query: 858  SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLNQLQLLDLSD 915
            SS   L+L  N L        D L+QL+ L+L+ N L   G           L+ LDLS 
Sbjct: 28   SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 916  NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 975
            N +  +  S F                                                 
Sbjct: 88   NGVITM-SSNFLG----------------------------------------------- 99

Query: 976  AYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 1034
                  L  L  LD   + L       +  +L  +  L++SH +        F+ L  +E
Sbjct: 100  ------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 1035 SLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLS 1068
             L ++ N            +L  L    ++   L 
Sbjct: 154  VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 7/122 (5%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA 132
                +F     LE L ++ N+       +    L    NL  LDLS         ++  
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---NLTFLDLSQCQLEQLSPTAFN 196

Query: 133 RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKI---DKFMVSKGLSKLKSLGL 189
            LSSL+ L +S N    S+D      L  L+ LD   N I    K  +    S L  L L
Sbjct: 197 SLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255

Query: 190 SG 191
           + 
Sbjct: 256 TQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 40/194 (20%)

Query: 885  SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSS 940
            + +      L   VP  +   +    L+L  N L  L    FD     T L  S N  S 
Sbjct: 10   TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 941  PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 1000
                                        +             + L  LDLS N ++  + 
Sbjct: 67   ----------------------KGCCSQSDFG---------TTSLKYLDLSFNGVI-TMS 94

Query: 1001 PQIGNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 1059
                 L +++ L+  H+NL        F +LR++  LD+S+             L++L +
Sbjct: 95   SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 1060 FIVAYNNLSGKIPE 1073
              +A N+       
Sbjct: 155  LKMAGNSFQENFLP 168

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA 132
                +FT  + L  LDLS   +   +        + L++L++L++S N F +       
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 133 RLSSLRSLYLSDNRLEGSIDVKELDSLRD-LEELDIGGNKID 173
            L+SL+ L  S N +  +   +EL      L  L++  N   
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  119 bits (300), Expect = 2e-28
 Identities = 68/449 (15%), Positives = 134/449 (29%), Gaps = 68/449 (15%)

Query: 111 NNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGN 170
           +N      +          S  +L++L SL   ++ +    D+  ++ L  L +L    N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSN 74

Query: 171 KIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLER 230
            I    +S   + L  L              +      L  L+   N++  L        
Sbjct: 75  NITTLDLS-QNTNLTYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTKLD------- 122

Query: 231 LSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELD 290
           +S+   L  L+   N      +S     + LT L    N     I   +    + L  LD
Sbjct: 123 VSQNPLLTYLNCARNTLTEIDVSH---NTQLTELDCHLNKK---ITKLDVTPQTQLTTLD 176

Query: 291 INDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTA 349
            + N+I  ++VS      + L  L+         N + +  +     L  L   SN    
Sbjct: 177 CSFNKITELDVS----QNKLLNRLNCD------TNNITKLDLNQNIQLTFLDCSSNKL-- 224

Query: 350 TLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPH 409
              T  ++   T L Y     + L     +   S    L  L     +    L      H
Sbjct: 225 ---TEIDVTPLTQLTYFDCSVNPLT----ELDVSTLSKLTTLHCIQTD----LLEIDLTH 273

Query: 410 FKSLEHLDMRFARIALNTSFLQIIGES-MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHL 468
              L +              ++ +  +    L  L    + +           L     L
Sbjct: 274 NTQLIYFQA------EGCRKIKELDVTHNTQLYLLDCQAAGITELD-------LSQNPKL 320

Query: 469 QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 528
             LY++N +L   L   +++ T L+ L      +      S +  + ++     +     
Sbjct: 321 VYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ---DFSSVGKIPALNNNFEAEGQT- 373

Query: 529 IPVSLEPLFNHSKLKIFDAKNNEINGEIN 557
             +++      +         + ++   N
Sbjct: 374 --ITMPKETLTNNSLTIAVSPDLLDQFGN 400

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  114 bits (288), Expect = 5e-27
 Identities = 85/490 (17%), Positives = 152/490 (31%), Gaps = 96/490 (19%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
            +         L SLD   ++I        + G+ +L  L  L  + N         L++
Sbjct: 33  TDTISEEQLATLTSLDCHNSSI------TDMTGIEKLTGLTKLICTSNNITT---LDLSQ 83

Query: 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTG 193
            ++L  L    N+L  ++D   +  L  L  L+   NK+ K  VS+              
Sbjct: 84  NTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDVSQ-------------- 125

Query: 194 FKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILS 253
                          L  L+ + N +  +        +S  ++L +LD   N        
Sbjct: 126 ------------NPLLTYLNCARNTLTEID-------VSHNTQLTELDCHLN--KKITKL 164

Query: 254 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKS 313
            V   + LT+L  S N     I   +      L  L+ + N I  ++++       +L  
Sbjct: 165 DVTPQTQLTTLDCSFN----KITELDVSQNKLLNRLNCDTNNITKLDLN----QNIQLTF 216

Query: 314 LDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSS 372
           LD S       NKL +  +     L       N       T  ++   + L  L    + 
Sbjct: 217 LDCS------SNKLTEIDVTPLTQLTYFDCSVNPL-----TELDVSTLSKLTTLHCIQTD 265

Query: 373 L-HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 431
           L  I L     +    L      G      +      H   L  LD + A I       +
Sbjct: 266 LLEIDL-----THNTQLIYFQAEG---CRKIKELDVTHNTQLYLLDCQAAGIT------E 311

Query: 432 IIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 491
           +     P L YL L+           LD  +     L+ L   N  ++      +    +
Sbjct: 312 LDLSQNPKLVYLYLNN-----TELTELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPA 362

Query: 492 LRILDVSFNQLT----GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 547
           L     +  Q       +++++ L    S + L    N   I      +++ +   I   
Sbjct: 363 LNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWE 422

Query: 548 KNNEINGEIN 557
             +  N  + 
Sbjct: 423 NLSTDNPAVT 432

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  107 bits (269), Expect = 1e-24
 Identities = 68/475 (14%), Positives = 148/475 (31%), Gaps = 97/475 (20%)

Query: 464 PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 523
           P  +         +++ +         +L  LD   + +T     + +  LT + +L  +
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICT 72

Query: 524 NNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 583
           +N+         L  ++ L      +N++      +  +TP  +L  L+  +N       
Sbjct: 73  SNNITTL----DLSQNTNLTYLACDSNKL-----TNLDVTPLTKLTYLNCDTN------- 116

Query: 584 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 643
                   +L + ++S               N  L +L    ++L     + +  + +L 
Sbjct: 117 --------KLTKLDVS--------------QNPLLTYLNCARNTLT---EIDVSHNTQLT 151

Query: 644 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 703
            LD   N     + V        L   + S N +             L  L+   N +T 
Sbjct: 152 ELDCHLNKKITKLDVT---PQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT- 204

Query: 704 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 763
           ++  +     + L FL  S+N L     +    L  L +     N    E+   +S  S 
Sbjct: 205 KLDLNQ---NIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNPL-TELD--VSTLSK 255

Query: 764 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 823
           L  L+    +L  +I   L +   L +           +  +      L +LD     I+
Sbjct: 256 LTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT 310

Query: 824 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 883
             L                                 LV L L+   L   +   +   ++
Sbjct: 311 -ELD--------------------------LSQNPKLVYLYLNNTELT-ELD--VSHNTK 340

Query: 884 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNN 938
           L  L+  + +++ +    + ++  L     ++     +      N +L  + + +
Sbjct: 341 LKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  104 bits (262), Expect = 1e-23
 Identities = 76/410 (18%), Positives = 143/410 (34%), Gaps = 47/410 (11%)

Query: 662  DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG--EIPDHLAMCCVNLEFL 719
            D   S V     M A D     S   +  L  LD  N+ +T    I          L  L
Sbjct: 18   DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITDMTGIEK-----LTGLTKL 69

Query: 720  SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 779
              ++N++     S      NL +L  + N     +   ++  + L  L  + N L+ K+ 
Sbjct: 70   ICTSNNITTLDLS---QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD 122

Query: 780  RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 839
              +     L ++   +N L     ++      L  LD   N     L        +  + 
Sbjct: 123  --VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLD 176

Query: 840  LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 899
             S N    ++ E        L  L+   N +   +   ++   QL+ L+ + N L     
Sbjct: 177  CSFN----KITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE--- 226

Query: 900  IQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSV 958
            I +  L QL   D S N L  L  S     TTLH    +    D    T       +G  
Sbjct: 227  IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286

Query: 959  EKKILEIFEFTTKNIAYAYQGRVLSL-------LAGLDLSCNKLVGHIPPQIGNLTRIQT 1011
            + K L++   T   +       +  L       L  L L+  +L   +   + + T++++
Sbjct: 287  KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKS 343

Query: 1012 LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 1061
            L+  + ++      +   +  + +   +  +    +P++ +  N+L I +
Sbjct: 344  LSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 98.2 bits (245), Expect = 2e-21
 Identities = 79/468 (16%), Positives = 136/468 (29%), Gaps = 51/468 (10%)

Query: 618  LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 677
                      +     +       L  LD  N++      +E    L  L     + N +
Sbjct: 20   FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEK---LTGLTKLICTSNNI 76

Query: 678  DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL 737
              ++         L +L   +NKLT      L      L +L+   N L     S     
Sbjct: 77   T-TLD--LSQNTNLTYLACDSNKLTNLDVTPL----TKLTYLNCDTNKLTKLDVS---QN 126

Query: 738  RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 797
              L +L    N    EI   +S  + L  L  + N    K+   +     L  +    N 
Sbjct: 127  PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 798  LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 857
            +     ++  +   L  L+   NNI+  L        +  +  S N    +L E      
Sbjct: 182  ITE---LDVSQNKLLNRLNCDTNNIT-KLDLNQNI-QLTFLDCSSN----KLTEIDVTPL 232

Query: 858  SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 917
            + L   D S N L   +      LS+L+ L+    +L     I L    QL         
Sbjct: 233  TQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286

Query: 918  LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977
                +     NT L+      +       T   +S     +    L   E T  ++++  
Sbjct: 287  KIKELDVT-HNTQLYLLDCQAAGI-----TELDLSQNP-KLVYLYLNNTELTELDVSH-- 337

Query: 978  QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037
                 + L  L      +       +G +  +     +          T +N     ++ 
Sbjct: 338  ----NTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 1038 LSYNKLSG---KIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFN 1082
                   G    I      +   A   + + NLS   P  T  F + N
Sbjct: 392  PDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.0 bits (221), Expect = 2e-18
 Identities = 71/444 (15%), Positives = 130/444 (29%), Gaps = 60/444 (13%)

Query: 334 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSM 393
           FP  N     +  F    T T        L  L     +  I+ +  I      L  L  
Sbjct: 15  FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDC--HNSSITDMTGIEK-LTGLTKLIC 71

Query: 394 SGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTN 453
           +       ++        +L +L     ++        +    +  L YL+   + L   
Sbjct: 72  TSNN----ITTLDLSQNTNLTYLACDSNKLT------NLDVTPLTKLTYLNCDTNKLTKL 121

Query: 454 SSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVH 513
                   +     L  L    N L   +   +++ T L  LD   N+    I+   +  
Sbjct: 122 D-------VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKK---ITKLDVTP 168

Query: 514 LTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS 572
            T +  L  S N    + VS      +  L   +   N I         L    QL  L 
Sbjct: 169 QTQLTTLDCSFNKITELDVS-----QNKLLNRLNCDTNNI-----TKLDLNQNIQLTFLD 218

Query: 573 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF 632
            SSN    +          +L   + S    + E         +KL  L+ +   L    
Sbjct: 219 CSSNKLTEIDVTPLT----QLTYFDCSVNP-LTELDVS---TLSKLTTLHCIQTDLL--- 267

Query: 633 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 692
            + +  + +L +           + V        L   +     +   +         L 
Sbjct: 268 EIDLTHNTQLIYFQAEGCRKIKELDVT---HNTQLYLLDCQAAGIT-ELD--LSQNPKLV 321

Query: 693 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 752
           +L L+N +LT E+          L+ LS  N  ++   FS +  +  L          + 
Sbjct: 322 YLYLNNTELT-ELDVSH---NTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTIT 375

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSG 776
              ++L+  S    +  +  +  G
Sbjct: 376 MPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.1 bits (216), Expect = 6e-18
 Identities = 64/390 (16%), Positives = 121/390 (31%), Gaps = 69/390 (17%)

Query: 680  SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 739
            S    F +  F   +  +      +           L  L   N+S+     + I  L  
Sbjct: 10   SFNDWFPDDNFASEVAAAFEMQATDTISEEQ--LATLTSLDCHNSSITD--MTGIEKLTG 65

Query: 740  LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 799
            L  L+   N+    +   LS+ ++L  L  ++N L+  +   +  L  L ++    N L 
Sbjct: 66   LTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT 119

Query: 800  GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSS 859
                ++  +   L  L+ + N ++  +        + ++    N     + +      + 
Sbjct: 120  ---KLDVSQNPLLTYLNCARNTLT-EIDVSHNT-QLTELDCHLNKK---ITKLDVTPQTQ 171

Query: 860  LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 919
            L TLD S+N +   +   +     L+ LN   NN+     + L +  QL  LD S N L 
Sbjct: 172  LTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT 225

Query: 920  GLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ 978
             +  +     T    S N          T   +S                          
Sbjct: 226  EIDVTPLTQLTYFDCSVNPL--------TELDVST------------------------- 252

Query: 979  GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 1038
               LS L  L      L+  I   + + T++               L  ++   +  LD 
Sbjct: 253  ---LSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKI--KELDVTHNTQLYLLDC 304

Query: 1039 SYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068
                ++     Q   L  L    +    L+
Sbjct: 305  QAAGITELDLSQNPKLVYL---YLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.8 bits (140), Expect = 1e-08
 Identities = 34/221 (15%), Positives = 62/221 (28%), Gaps = 25/221 (11%)

Query: 79  FTPFQQLESLDLSWNNIAG-------------CAENEGLEGLSRLNNLKMLDLSGNAFNN 125
            TP  QL   D S N +               C + + L  +   +N +++         
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD-LLEIDLTHNTQLIYFQAEGCRK 287

Query: 126 NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLK 185
                +   + L  L      +   +D   L     L  L +   ++ +  VS   +KLK
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGIT-ELD---LSQNPKLVYLYLNNTELTELDVSH-NTKLK 342

Query: 186 SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQG-LERLSRLSKLKKLDLRG 244
           SL       +   D         L     +  +   +         L+       LD  G
Sbjct: 343 SLSCVNAHIQ---DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

Query: 245 NLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSN 285
           N    +I      +    +  ++   L     A  +   S 
Sbjct: 400 NP--MNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSE 438

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  115 bits (289), Expect = 4e-28
 Identities = 61/280 (21%), Positives = 108/280 (38%), Gaps = 33/280 (11%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
                 +    +N+            + L+ +  L   G       +  +  L++L  L 
Sbjct: 18  LANAIKIAAGKSNV------TDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVR 201
           L DN++    D+  L +L  + EL++ GN +       GL  +K+L L+ T      DV 
Sbjct: 70  LKDNQIT---DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT---DVT 123

Query: 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 261
                +NL+VL +  N+I N      +  L+ L+ L+ L +       S L+ +A LS L
Sbjct: 124 PLAGLSNLQVLYLDLNQITN------ISPLAGLTNLQYLSIGNA--QVSDLTPLANLSKL 175

Query: 262 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGI 321
           T+L    N +    D     SL NL E+ + +N+I +V           L  + L+   I
Sbjct: 176 TTLKADDNKIS---DISPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTI 229

Query: 322 RDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFT 361
            +      +     +L   ++      A +       N T
Sbjct: 230 TNQPVFYNN-----NLVVPNVVKGPSGAPIAPATISDNGT 264

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  114 bits (287), Expect = 6e-28
 Identities = 57/240 (23%), Positives = 95/240 (39%), Gaps = 25/240 (10%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
                 + +L      +        +EG+  LNNL  L+L  N   +  L+ L  L+ + 
Sbjct: 37  QADLDGITTLSAFGTGV------TTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTF 198
            L LS N L+   +V  +  L+ ++ LD+   +I       GLS L+ L L         
Sbjct: 89  ELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT--- 142

Query: 199 DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL 258
           ++       NL+ L +   ++ +      L  L+ LSKL  L    N    S +S +A L
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVSD------LTPLANLSKLTTLKADDN--KISDISPLASL 194

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
            +L  +HL +N +    D     + SNL  + + +  I N  V      +        SG
Sbjct: 195 PNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  109 bits (275), Expect = 2e-26
 Identities = 50/245 (20%), Positives = 98/245 (40%), Gaps = 26/245 (10%)

Query: 104 LEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLE 163
           +     L N   +    +   +    + A L  + +L      +     ++ +  L +L 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLI 66

Query: 164 ELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLV 223
            L++  N+I      K L+K+  L LSG   K   +V       +++ LD++  +I +  
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITD-- 121

Query: 224 VPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL 283
               +  L+ LS L+ L L  N    + +S +A L++L  L + +  +    D     +L
Sbjct: 122 ----VTPLAGLSNLQVLYLDLN--QITNISPLAGLTNLQYLSIGNAQVS---DLTPLANL 172

Query: 284 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLE 343
           S L  L  +DN+I ++        L  L  + L    I D    +  + +  +L  + L 
Sbjct: 173 SKLTTLKADDNKISDIS---PLASLPNLIEVHLKNNQISD----VSPLANTSNLFIVTLT 225

Query: 344 SNNFT 348
           +   T
Sbjct: 226 NQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  104 bits (262), Expect = 2e-24
 Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 28/245 (11%)

Query: 126 NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLK 185
           NV+     L++   +    + +    D      L  +  L   G  +      + L+ L 
Sbjct: 10  NVIFPDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLI 66

Query: 186 SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 245
            L L         D+    +   +  L++SGN + N      +  ++ L  +K LDL   
Sbjct: 67  GLELKDNQIT---DLAPLKNLTKITELELSGNPLKN------VSAIAGLQSIKTLDLTST 117

Query: 246 LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 305
               + ++ +A LS+L  L+L  N +    +      L+NL+ L I + ++ ++      
Sbjct: 118 --QITDVTPLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDLT---PL 169

Query: 306 RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY 365
             L KL +L      I D    +  + S P+L  +HL++N     ++    L N +NL  
Sbjct: 170 ANLSKLTTLKADDNKISD----ISPLASLPNLIEVHLKNNQ----ISDVSPLANTSNLFI 221

Query: 366 LTLDD 370
           +TL +
Sbjct: 222 VTLTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  100 bits (250), Expect = 6e-23
 Identities = 53/247 (21%), Positives = 105/247 (42%), Gaps = 28/247 (11%)

Query: 152 DVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEV 211
            +    +L +  ++  G + +   +    L  + +L   GTG      +      NNL  
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIG 67

Query: 212 LDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNIL 271
           L++  N+I +      L  L  L+K+ +L+L GN      +S++A L S+ +L L+   +
Sbjct: 68  LELKDNQITD------LAPLKNLTKITELELSGN--PLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 272 QGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM 331
               D      LSNL+ L ++ N+I N+       GL  L+ L +    + D    L  +
Sbjct: 120 T---DVTPLAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSD----LTPL 169

Query: 332 GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 391
            +   L TL  + N     ++    L +  NL  + L ++   IS +  + +   +L  +
Sbjct: 170 ANLSKLTTLKADDNK----ISDISPLASLPNLIEVHLKNN--QISDVSPLAN-TSNLFIV 222

Query: 392 SMSGCEV 398
           +++   +
Sbjct: 223 TLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 54/272 (19%), Positives = 97/272 (35%), Gaps = 58/272 (21%)

Query: 281 DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTL 340
            +L+N  ++    + + +         L  + +L   G G+      ++ +    +L  L
Sbjct: 16  PALANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTT----IEGVQYLNNLIGL 68

Query: 341 HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNG 400
            L+ N     +T    L N T +  L L  +   +  + +I     S+K L ++  ++  
Sbjct: 69  ELKDNQ----ITDLAPLKNLTKITELELSGN--PLKNVSAIAG-LQSIKTLDLTSTQITD 121

Query: 401 VLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQ 460
           V          +L+ L +   +I            ++  L  L+                
Sbjct: 122 V---TPLAGLSNLQVLYLDLNQI-----------TNISPLAGLT---------------- 151

Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
                 +LQ L I N  +    P  LAN + L  L    N+++     SPL  L ++ E+
Sbjct: 152 ------NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS---DISPLASLPNLIEV 200

Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 552
            L NN       + PL N S L I    N  I
Sbjct: 201 HLKNNQIS---DVSPLANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 50/290 (17%), Positives = 99/290 (34%), Gaps = 44/290 (15%)

Query: 664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723
           L + +      + +      +  ++  +  L      +T  I         NL  L L +
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLELKD 72

Query: 724 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 783
           N +     + + +L  +  L L GN    +   +++   S+K L L +  ++   P  L 
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 784 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 843
            L  LQ + +  N +    P     L +LQ L I +  +S  L                 
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP--------------- 168

Query: 844 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 903
                       N S L TL    N ++  I   +  L  L  ++L +N +    P+   
Sbjct: 169 ----------LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSPLA-- 214

Query: 904 RLNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSIS 952
             + L ++ L++  +        +N    +     + +P  P   S + +
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGT 264

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.1 bits (172), Expect = 5e-13
 Identities = 45/283 (15%), Positives = 99/283 (34%), Gaps = 30/283 (10%)

Query: 421 ARIALNTSFLQIIG-ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR 479
             I   T+   I    ++ +   ++   S +    +         L  +  L      + 
Sbjct: 1   GSITQPTAINVIFPDPALANAIKIAAGKSNVTDTVT------QADLDGITTLSAFGTGVT 54

Query: 480 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH 539
            ++   +    +L  L++  NQ+T     +PL +LT I EL LS N  +   ++  +   
Sbjct: 55  -TIE-GVQYLNNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLK---NVSAIAGL 106

Query: 540 SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELS 599
             +K  D  + +I  ++     L+    L+ L L  N    +T    L     L+   + 
Sbjct: 107 QSIKTLDLTSTQIT-DVTPLAGLS---NLQVLYLDLN---QITNISPLAGLTNLQYLSIG 159

Query: 600 HIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 659
           + + + +     L N +KL  L   ++ ++     P+ S   L  + + NN      P+ 
Sbjct: 160 NAQ-VSDLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSPLA 214

Query: 660 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 702
                 +L    ++   +         N++    +   +    
Sbjct: 215 ---NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 48/265 (18%), Positives = 101/265 (38%), Gaps = 30/265 (11%)

Query: 612 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPS 666
             +   +  L      +       +     L  L++ +N         I D+     L  
Sbjct: 37  QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ--------ITDLAPLKNLTK 86

Query: 667 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 726
           +    +S N L     S+   +  ++ LDL++ ++T   P        NL+ L L  N +
Sbjct: 87  ITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLA---GLSNLQVLYLDLNQI 141

Query: 727 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 786
                S +  L NL++L +     V ++   L+  S L  L  ++N +S   P  L +L 
Sbjct: 142 TN--ISPLAGLTNLQYLSIGNAQ-VSDLT-PLANLSKLTTLKADDNKISDISP--LASLP 195

Query: 787 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 846
            L  + +  N +    P+      +L I+ +++  I  +    FY  ++   ++ K    
Sbjct: 196 NLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTI--TNQPVFYNNNLVVPNVVKGPSG 251

Query: 847 GQLKEGTFFNCSSLVTLDLSYNYLN 871
             +   T  +  +  + +L++N  +
Sbjct: 252 APIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 48/279 (17%), Positives = 97/279 (34%), Gaps = 53/279 (18%)

Query: 782  LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 841
               L     I   K+++   +      LD +  L      ++ ++    Y  ++  + L 
Sbjct: 15   DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELK 71

Query: 842  KNMLHGQLKEGTFF-NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI 900
             N    Q+ +     N + +  L+LS N L  ++   I GL  +  L+L    +    P 
Sbjct: 72   DN----QITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP- 124

Query: 901  QLCRLNQLQLLDLSDNNLHGLIP-SCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSV 958
             L  L+ LQ+L L  N +  + P +   N   L                           
Sbjct: 125  -LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA---------------------- 161

Query: 959  EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN 1018
              ++ ++                LS L  L    NK+   I P + +L  +  ++L +N 
Sbjct: 162  --QVSDLTPLAN-----------LSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQ 206

Query: 1019 LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 1057
            ++   PL  +N  ++  + L+   ++ +      +L   
Sbjct: 207  ISDVSPL--ANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 56/278 (20%), Positives = 95/278 (34%), Gaps = 57/278 (20%)

Query: 758  LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 817
                ++   +    +N++  +     +L G+  +      +     V++  L++L  L++
Sbjct: 15   DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQY--LNNLIGLEL 70

Query: 818  SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE-GTFFNCSSLVTLDLSYNYLNGSIPD 876
             DN I+  L        I ++ LS N     LK         S+ TLDL+   +    P 
Sbjct: 71   KDNQIT-DLAPLKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 877  WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLH 932
             + GLS L  L L  N +    P  L  L  LQ L + +  +  L P    N    TTL 
Sbjct: 125  -LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 933  ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 992
               N  S           IS                             L  L  + L  
Sbjct: 180  ADDNKIS----------DISPLAS-------------------------LPNLIEVHLKN 204

Query: 993  NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 1030
            N++    P  + N + +  + L++  +T       +NL
Sbjct: 205  NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 41/262 (15%), Positives = 97/262 (37%), Gaps = 51/262 (19%)

Query: 809  LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 868
            L +   +    +N++ ++        I  +      +   ++       ++L+ L+L  N
Sbjct: 18   LANAIKIAAGKSNVTDTVTQADLD-GITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDN 73

Query: 869  YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFD 927
             +   +   +  L++++ L L+ N L+      +  L  ++ LDL+   +  + P +   
Sbjct: 74   QIT-DLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 928  N-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 986
            N   L+   N                        +I  I                L+ L 
Sbjct: 130  NLQVLYLDLN------------------------QITNISPLAG-----------LTNLQ 154

Query: 987  GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 1046
             L +   ++   + P + NL+++ TL    N ++   PL  ++L ++  + L  N++S  
Sbjct: 155  YLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDV 210

Query: 1047 IPRQLVDLNTLAIFIVAYNNLS 1068
             P  L + + L I  +    ++
Sbjct: 211  SP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 25/215 (11%)

Query: 856  NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 915
              ++ + +    + +  ++      L  ++ L+     +     +Q   LN L  L+L D
Sbjct: 17   ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 916  NNLHGLIP-SCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 973
            N +  L P       T L  S N   +          +S   G    K L++      ++
Sbjct: 73   NQITDLAPLKNLTKITELELSGNPLKN----------VSAIAGLQSIKTLDLTSTQITDV 122

Query: 974  AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 1033
                    LS L  L L  N++  +I P +  LT +Q L++ +  ++   PL  +NL  +
Sbjct: 123  TPLAG---LSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPL--ANLSKL 175

Query: 1034 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068
             +L    NK+S  I   L  L  L    +  N +S
Sbjct: 176  TTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS 208

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  114 bits (288), Expect = 9e-28
 Identities = 59/301 (19%), Positives = 109/301 (36%), Gaps = 27/301 (8%)

Query: 642 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 701
           LR +  S+   +  +P    +I P     ++  N +       F  +  L  L L NNK+
Sbjct: 35  LRVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 702 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 761
           + +I +        L+ L +S N L   I   +    +L  L +  N          S  
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGL 146

Query: 762 SSLKGLYLNNNNLSGKI--PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 819
            ++  + +  N L      P     LK L ++ + +  L G IP +    ++L  L +  
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDL--PETLNELHLDH 202

Query: 820 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 878
           N I             + ++ L  N +   ++ G+     +L  L L  N L+  +P  +
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260

Query: 879 DGLSQLSHLNLAHNNLEGEVP-------IQLCRLNQLQLLDLSDNNL--HGLIPSCFDNT 929
             L  L  + L  NN+  +V            +      + L +N +    + P+ F   
Sbjct: 261 PDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 930 T 930
           T
Sbjct: 320 T 320

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  114 bits (287), Expect = 1e-27
 Identities = 63/299 (21%), Positives = 107/299 (35%), Gaps = 40/299 (13%)

Query: 85  LESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSD 144
              LDL  N+I+   +++       L +L  L L  N  +     + + L  L+ LY+S 
Sbjct: 56  TTLLDLQNNDISELRKDD----FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 145 NRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGTGFKGTFDVRE 202
           N L   I     +    L EL I  N+I K       GL  +  + + G   + +    E
Sbjct: 112 NHLV-EIPP---NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF--E 165

Query: 203 FDSFN--NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSS 260
             +F+   L  L +S  ++    +P+ L        L +L L  N      L  + R S 
Sbjct: 166 PGAFDGLKLNYLRISEAKLTG--IPKDL-----PETLNELHLDHNKIQAIELEDLLRYSK 218

Query: 261 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 320
           L  L L HN ++  I+      L  L EL +++N++    V  G   L+ L+ + L    
Sbjct: 219 LYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLH--- 272

Query: 321 IRDGNKL----------LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLD 369
               N +          +         N + L +N               T+   +   
Sbjct: 273 ---TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  108 bits (273), Expect = 9e-26
 Identities = 69/368 (18%), Positives = 112/368 (30%), Gaps = 85/368 (23%)

Query: 690  FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGN 748
             L+ +  S+  L   +P  ++    +   L L NN +   +    F  L++L  L+L  N
Sbjct: 34   HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN 88

Query: 749  HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 808
                   ++ S    L+ LY++ N+L  +IP  L                          
Sbjct: 89   KISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-------------------------- 121

Query: 809  LDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 867
              SL  L I DN I       F  L ++  + +  N L     E   F+   L  L +S 
Sbjct: 122  PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 868  NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 927
              L   IP   D    L+ L+L HN ++      L R ++L  L L  N +  +      
Sbjct: 182  AKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 928  N----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 983
                   LH   N  S                                          L 
Sbjct: 239  FLPTLRELHLDNNKLSRVPAGLPD----------------------------------LK 264

Query: 984  LLAGLDLSCNKLVGHIPPQI-------GNLTRIQTLNLSHNNLTGTI--PLTFSNLRHIE 1034
            LL  + L  N +   +                   ++L +N +      P TF  +    
Sbjct: 265  LLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 1035 SLDLSYNK 1042
            ++     K
Sbjct: 324  AIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.9 bits (247), Expect = 2e-22
 Identities = 55/291 (18%), Positives = 103/291 (35%), Gaps = 47/291 (16%)

Query: 759  SKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 817
              C   L+ +  ++  L   +P+ +        + +  N +      +F  L  L  L +
Sbjct: 29   FGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85

Query: 818  SDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 876
             +N IS      F PL  ++++++SKN L  ++        SSLV L +  N +      
Sbjct: 86   VNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKG 141

Query: 877  WIDGLSQLSHLNLAHNNL-EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TTLHES 934
               GL  ++ + +  N L             +L  L +S+  L G+     +    LH  
Sbjct: 142  VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLD 201

Query: 935  YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 994
            +N                        KI  I                 S L  L L  N+
Sbjct: 202  HN------------------------KIQAIELEDLLR---------YSKLYRLGLGHNQ 228

Query: 995  LVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
            +   I       L  ++ L+L +N L+  +P    +L+ ++ + L  N ++
Sbjct: 229  I-RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.6 bits (246), Expect = 3e-22
 Identities = 57/338 (16%), Positives = 115/338 (34%), Gaps = 55/338 (16%)

Query: 247 CNNSILSSVARL--SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 304
           C++  L +V +      T L L +N +   +   +F  L +L  L + +N+I  +   + 
Sbjct: 40  CSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIH-EKA 97

Query: 305 YRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL 363
           +  LRKL+ L +S       N L++       SL  L +  N                N+
Sbjct: 98  FSPLRKLQKLYISK------NHLVEIPPNLPSSLVELRIHDNRIRKVPKGV--FSGLRNM 149

Query: 364 EYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI 423
             + +  + L  S  +     F  LK                       L +L +  A++
Sbjct: 150 NCIEMGGNPLENSGFEP--GAFDGLK-----------------------LNYLRISEAKL 184

Query: 424 ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP 483
                   I  +   +L  L L  + +      I  + L   + L  L + +N +R    
Sbjct: 185 T------GIPKDLPETLNELHLDHNKI----QAIELEDLLRYSKLYRLGLGHNQIRMIEN 234

Query: 484 WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPV----SLEPLFN 538
             L+   +LR L +  N+L+  + +  L  L  ++ + L  N+   + V     +     
Sbjct: 235 GSLSFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292

Query: 539 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 576
            +        NN +     +  +        ++   + 
Sbjct: 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.1 bits (237), Expect = 4e-21
 Identities = 56/292 (19%), Positives = 99/292 (33%), Gaps = 30/292 (10%)

Query: 604 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 663
           I E      +    L  L LVN+ ++          ++L+ L +S N+    IP    ++
Sbjct: 66  ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIP---PNL 121

Query: 664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723
             SLV   I  N +       F  +  +  +++  N L     +  A   + L +L +S 
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 724 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWL 782
             L   I   +     L  L L+ N     I    L + S L  L L +N +       L
Sbjct: 182 AKLT-GIPKDLPE--TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 783 GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 842
             L  L+ + +  N L   +P     L  LQ++ +  NNI+    + F P+         
Sbjct: 238 SFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV--------- 287

Query: 843 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI--PDWIDGLSQLSHLNLAHN 892
                    G     +    + L  N +      P     ++    +   + 
Sbjct: 288 ---------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 53/263 (20%), Positives = 96/263 (36%), Gaps = 24/263 (9%)

Query: 811  SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 870
             L+++  SD  +  ++P          + L  N +  +L++  F     L  L L  N +
Sbjct: 34   HLRVVQCSDLGLK-AVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 871  NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-- 928
            +         L +L  L ++ N+L  E+P  L   + L  L + DN +  +    F    
Sbjct: 91   SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 929  --TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 986
                +    N           +       G+ +   L     +   +       +   L 
Sbjct: 148  NMNCIEMGGNPL--------ENSGF--EPGAFDGLKLNYLRISEAKLTG-IPKDLPETLN 196

Query: 987  GLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 1045
             L L  NK+   I  +     +++  L L HN +      + S L  +  L L  NKLS 
Sbjct: 197  ELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254

Query: 1046 KIPRQLVDLNTLAIFIVAYNNLS 1068
            ++P  L DL  L +  +  NN++
Sbjct: 255  RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.2 bits (201), Expect = 2e-16
 Identities = 35/231 (15%), Positives = 80/231 (34%), Gaps = 48/231 (20%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEG-LEGLSRLNNLKMLDLSGNAFNNNVLSSLA 132
           +   +F+  + +  +++  N +       G  +GL     L  L +S        L+ + 
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL----KLNYLRISEAK-----LTGIP 188

Query: 133 R--LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLS 190
           +    +L  L+L  N+++ +I++++L     L  L +G N+I                  
Sbjct: 189 KDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR----------------- 230

Query: 191 GTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN----L 246
                   +         L  L +  N++    VP G   L  L  L+ + L  N    +
Sbjct: 231 ------MIENGSLSFLPTLRELHLDNNKLSR--VPAG---LPDLKLLQVVYLHTNNITKV 279

Query: 247 CNNSI--LSSVARLSSLTSLHLSHNILQ-GSIDAKEFDSLSNLEELDINDN 294
             N    +    + +    + L +N +    +    F  +++   +   + 
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 55/277 (19%), Positives = 96/277 (34%), Gaps = 35/277 (12%)

Query: 437 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT-TSLRIL 495
           +  L  L L  + +    S+I ++   PL  LQ+LYI  N L   +P    N  +SL  L
Sbjct: 77  LQHLYALVLVNNKI----SKIHEKAFSPLRKLQKLYISKNHLV-EIP---PNLPSSLVEL 128

Query: 496 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 555
            +  N++   +       L ++  + +  N           F+  KL        ++   
Sbjct: 129 RIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL--- 184

Query: 556 INESHSLTPKF--QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLE 613
                 +       L  L L  N   ++   + L    +L    L H + I    N  L 
Sbjct: 185 ----TGIPKDLPETLNELHLDHNKIQAIE-LEDLLRYSKLYRLGLGHNQ-IRMIENGSLS 238

Query: 614 NNTKLEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQGHIP------VEIGDILP 665
               L  L+L N+ L+   R+P  +   K L+ + +  NN    +       V  G    
Sbjct: 239 FLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRA 294

Query: 666 SLVYFNISMNALDGSI--PSSFGNVIFLQFLDLSNNK 700
                ++  N +      P++F  V     +   N K
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 37/216 (17%), Positives = 63/216 (29%), Gaps = 61/216 (28%)

Query: 855  FNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 913
            F C   L  +  S   L  ++P  I      + L+L +N++          L  L  L L
Sbjct: 29   FGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85

Query: 914  SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 973
             +N +  +    F                                               
Sbjct: 86   VNNKISKIHEKAFSP--------------------------------------------- 100

Query: 974  AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 1033
                    L  L  L +S N LV  IPP +   + +  L +  N +       FS LR++
Sbjct: 101  --------LRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 1034 ESLDLSYNKL-SGKIPRQLVDLNTLAIFIVAYNNLS 1068
              +++  N L +        D   L    ++   L+
Sbjct: 150  NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  111 bits (280), Expect = 4e-27
 Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 27/236 (11%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
           F +    +L   ++            + LN++  +  + +   +  +  +  L ++  L+
Sbjct: 23  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVR 201
           L+ N+L    D+K L +L++L  L +  NK+      K L KLKSL L   G     D+ 
Sbjct: 75  LNGNKLT---DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS---DIN 128

Query: 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 261
                  LE L +  N+I +      +  LSRL+KL  L L  N    S +  +A L+ L
Sbjct: 129 GLVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDN--QISDIVPLAGLTKL 180

Query: 262 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSR--GYRGLRKLKSLD 315
            +L+LS N +    D +    L NL+ L++   E  N  ++          +K+ D
Sbjct: 181 QNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  110 bits (276), Expect = 2e-26
 Identities = 48/273 (17%), Positives = 101/273 (36%), Gaps = 28/273 (10%)

Query: 104 LEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLE 163
           +            +L   +  +    +   L+S+  +  +++ ++    V+ +  L ++ 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVT 71

Query: 164 ELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLV 223
           +L + GNK+        L  L  L L     K   D+        L+ L +  N I +  
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISD-- 126

Query: 224 VPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL 283
               +  L  L +L+ L L  N    + ++ ++RL+ L +L L  N +    D      L
Sbjct: 127 ----INGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQIS---DIVPLAGL 177

Query: 284 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLE 343
           + L+ L ++ N I ++       GL+ L  L+L         + L    +  S   +   
Sbjct: 178 TKLQNLYLSKNHISDLR---ALAGLKNLDVLELF------SQECLNKPINHQSNLVVPNT 228

Query: 344 SNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 376
             N   +L T + + +  + E   +       +
Sbjct: 229 VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 99.4 bits (248), Expect = 8e-23
 Identities = 55/248 (22%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 126 NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLK 185
             + S    +      L    +    D    + L  ++++    + I      + L  + 
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVT 71

Query: 186 SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 245
            L L+G       D++   +  NL  L +  N++ +      L  L  L KLK L L  N
Sbjct: 72  KLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKD------LSSLKDLKKLKSLSLEHN 122

Query: 246 LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 305
               S ++ +  L  L SL+L +N +    D      L+ L+ L + DN+I ++      
Sbjct: 123 --GISDINGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIV---PL 174

Query: 306 RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY 365
            GL KL++L LS   I D    L+++    +L+ L L S              N      
Sbjct: 175 AGLTKLQNLYLSKNHISD----LRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPNT 228

Query: 366 LTLDDSSL 373
           +   D SL
Sbjct: 229 VKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 97.4 bits (243), Expect = 3e-22
 Identities = 53/216 (24%), Positives = 85/216 (39%), Gaps = 23/216 (10%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
                 +  L L+ N +        ++ L+ L NL  L L  N   +  LSSL  L  L+
Sbjct: 64  IQYLPNVTKLFLNGNKL------TDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLK 115

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTF 198
           SL L  N +    D+  L  L  LE L +G NKI    V   L+KL +L L         
Sbjct: 116 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS--- 169

Query: 199 DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL 258
           D+        L+ L +S N I +      L  L+ L  L  L+L    C N  ++  + L
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
               ++  +   L   +  +      + E+ ++  +
Sbjct: 224 VVPNTVKNTDGSL---VTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 95.9 bits (239), Expect = 1e-21
 Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 28/231 (12%)

Query: 140 LYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFD 199
                  ++    +   D+  +  + ++    +   +    L+ +  +  + +  K    
Sbjct: 7   TITVPTPIK---QIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK---S 60

Query: 200 VREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLS 259
           V+      N+  L ++GN++ +      ++ L+ L  L  L L  N      LSS+  L 
Sbjct: 61  VQGIQYLPNVTKLFLNGNKLTD------IKPLANLKNLGWLFLDEN--KVKDLSSLKDLK 112

Query: 260 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGV 319
            L SL L HN +    D      L  LE L + +N+I ++        L KL +L L   
Sbjct: 113 KLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDN 166

Query: 320 GIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 370
            I D    +  +     L  L+L  N+    ++  + L    NL+ L L  
Sbjct: 167 QISD----IVPLAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 49/255 (19%), Positives = 90/255 (35%), Gaps = 41/255 (16%)

Query: 664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723
               +  N+   ++      +   +  +  +  +N+ +   +   +     N+  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNG 77

Query: 724 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 783
           N L       + +L+NL WL L+ N  V ++  SL     LK L L +N +S  I   L 
Sbjct: 78  NKLTD--IKPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 784 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 843
           +L  L+ + +  N +     +   RL  L  L + DN IS  +                 
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVP--------------- 173

Query: 844 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 903
                         + L  L LS N+++  +   + GL  L  L L       +      
Sbjct: 174 ----------LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQS 221

Query: 904 RLNQLQLLDLSDNNL 918
            L     +  +D +L
Sbjct: 222 NLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 55/268 (20%), Positives = 104/268 (38%), Gaps = 36/268 (13%)

Query: 333 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 392
           +F      +L+  +    +T     +   +++ +  ++S   I  +Q I    P++  L 
Sbjct: 22  AFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNS--DIKSVQGIQY-LPNVTKLF 74

Query: 393 MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 452
           ++G   N +   +   + K+L  L +   ++  + S L    + +  LK LSL  +    
Sbjct: 75  LNG---NKLTDIKPLANLKNLGWLFLDENKVK-DLSSL----KDLKKLKSLSLEHN---- 122

Query: 453 NSSRILD-QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 511
               I D  GL  L  L+ LY+ NN +       L+  T L  L +  NQ++      PL
Sbjct: 123 ---GISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---DIVPL 174

Query: 512 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 571
             LT ++ L LS NH      L  L     L + +  + E   +     S      L   
Sbjct: 175 AGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSN-----LVVP 226

Query: 572 SLSSNYGDSVTFPKFLYHQHELKEAELS 599
           +   N   S+  P+ +    + ++  + 
Sbjct: 227 NTVKNTDGSLVTPEIISDDGDYEKPNVK 254

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 48/307 (15%), Positives = 92/307 (29%), Gaps = 55/307 (17%)

Query: 767  LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 826
                   +                  + K  +   +      L+S+  +  ++++I  S+
Sbjct: 7    TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV 61

Query: 827  PSCFYPLSIKQVHLSKNMLHGQLKEGTFF-NCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 885
                Y  ++ ++ L+ N    +L +     N  +L  L L  N +   +   +  L +L 
Sbjct: 62   QGIQYLPNVTKLFLNGN----KLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLK 115

Query: 886  HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFDN-TTLHESYNNNSSPDK 943
             L+L HN +     +    L QL+ L L +N +  +   S      TL    N       
Sbjct: 116  SLSLEHNGISDINGLV--HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN------- 166

Query: 944  PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 1003
                             +I +I                L+ L  L LS N +   +   +
Sbjct: 167  -----------------QISDIVPLAG-----------LTKLQNLYLSKNHIS-DLRA-L 196

Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063
              L  +  L L             SNL    ++  +   L    P  + D        V 
Sbjct: 197  AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVK 254

Query: 1064 YNNLSGK 1070
            ++     
Sbjct: 255  WHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 47/265 (17%), Positives = 94/265 (35%), Gaps = 38/265 (14%)

Query: 567 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH--IKMIGEFPNWLLENNTKLEFLYLV 624
           +    +L      SVT        + + +   ++  IK +       ++    +  L+L 
Sbjct: 25  ETIKDNLKKK---SVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLFLN 76

Query: 625 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALDG 679
            + L      P+ + K L +L +  N         + D+     L  L   ++  N +  
Sbjct: 77  GNKLTDIK--PLANLKNLGWLFLDENK--------VKDLSSLKDLKKLKSLSLEHNGI-- 124

Query: 680 SIPSSFGNVIFLQFLDLSNNKLTG-EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 738
           S  +   ++  L+ L L NNK+T   +   L      L+ LSL +N +       +  L 
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRL----TKLDTLSLEDNQISD--IVPLAGLT 178

Query: 739 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 798
            L+ L L  NH + ++ ++L+   +L  L L +     K      NL     +      L
Sbjct: 179 KLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

Query: 799 EGPIPVEFCRLDSLQILDISDNNIS 823
             P  +        +  ++  +   
Sbjct: 237 VTPEIISD--DGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 44/290 (15%), Positives = 94/290 (32%), Gaps = 49/290 (16%)

Query: 758  LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 817
                +      L   +++  +      L  +  I+   + ++    +++  L ++  L +
Sbjct: 20   DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQY--LPNVTKLFL 75

Query: 818  SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 877
            + N ++  +       ++  + L +N +       +  +   L +L L +N ++  I   
Sbjct: 76   NGNKLT-DIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS-DING- 129

Query: 878  IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY-N 936
            +  L QL  L L +N +       L RL +L  L L DN +   I      T L   Y +
Sbjct: 130  LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLS 186

Query: 937  NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV 996
             N                       I ++                L  L  L+L   + +
Sbjct: 187  KN----------------------HISDLRALAG-----------LKNLDVLELFSQECL 213

Query: 997  GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 1046
                    NL    T+  +  +L    P   S+    E  ++ ++     
Sbjct: 214  NKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
             +L++L LS N+I        L  L+ L NL +L+L      N  ++  + L    ++ 
Sbjct: 177 LTKLQNLYLSKNHI------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKID-KFMVSKGLSKLKSLGLSGTGFKGT 197
            +D  L   +  + +    D E+ ++  +  +    VS    +  ++G +   F G 
Sbjct: 231 NTDGSL---VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGR 284

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  116 bits (291), Expect = 6e-27
 Identities = 88/473 (18%), Positives = 177/473 (37%), Gaps = 37/473 (7%)

Query: 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
              + L +  N +       ++  + LR+L +S N++  S+     +    +E L +S+N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 526 HFRIPVSLEPLFNHSKLKIFDAKNNEIN--GEINESHSLTPKFQLKSLSLSSNYGDSVTF 583
             +   ++      + L+  D   N+ +      E  +LT   +L  L LS+     +  
Sbjct: 111 RLQ---NI-SCCPMASLRHLDLSFNDFDVLPVCKEFGNLT---KLTFLGLSAAKFRQLDL 163

Query: 584 PKFLYHQHELKEAELSHIKM-IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL 642
               +        +L    +  GE  +  + N T L  ++  N   +    + +++   L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 643 RFLDVS-NNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF-----LQFLDL 696
           +  ++  N+     +   + ++       N+++  ++ +   S     F     +++L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 697 SNNKLTG----EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 752
            N  +T     E   +      +L    + N        +       +   +L  +    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
                    SS   L    N  +  + +    LK LQ +++ +N L+           ++
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNM 402

Query: 813 QILDISDNNISGSLPS------CFYPLSIKQVHLSKNMLHGQLKEGTFFNC--SSLVTLD 864
             L+  D +++ SL S      C +  SI  ++LS NML G     + F C    +  LD
Sbjct: 403 SSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTG-----SVFRCLPPKVKVLD 456

Query: 865 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 917
           L  N +  SIP  +  L  L  LN+A N L+        RL  LQ + L DN 
Sbjct: 457 LHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  113 bits (283), Expect = 6e-26
 Identities = 90/474 (18%), Positives = 171/474 (36%), Gaps = 55/474 (11%)

Query: 436 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 495
            +  L+ L LS + + +    +          L+ L + +N L+ ++        SLR L
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLF----NQDLEYLDVSHNRLQ-NISC--CPMASLRHL 126

Query: 496 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPL-FNHSKLKIFDAKNNEING 554
           D+SFN            +LT +  L LS   FR    L+ L   H  L          + 
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYHI 183

Query: 555 EINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL--- 611
           +  E+ SL        L L  +     +    +   + L   +LS+IK+  E    L   
Sbjct: 184 KGGETESL-QIPNTTVLHLVFHPNSLFSVQVNMS-VNALGHLQLSNIKLNDENCQRLMTF 241

Query: 612 ---LENNTKLEFLYLVNDSLAGPFRLPIHS---HKRLRFLDVSNNNFQGHIPVEIGDI-- 663
              L     L  + L +        + +      + + +L++ N      I  E      
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSE 301

Query: 664 --LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 721
             L SL+  ++       S  + +     +    LS +     I         +  FL+ 
Sbjct: 302 TALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNF 360

Query: 722 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 781
           + N     +F    +L+ L+ L+L+ N       ++  K + +                 
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGL-----KNFFKVALM----------------- 398

Query: 782 LGNLKGLQHIVMPKNHLE-GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL 840
             N+  L+ + +  N L            +S+ +L++S N ++GS+  C  P  +K + L
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-PPKVKVLDL 457

Query: 841 SKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD-WIDGLSQLSHLNLAHNN 893
             N +   + +    +  +L  L+++ N L  S+PD   D L+ L ++ L  N 
Sbjct: 458 HNNRIM-SIPKD-VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  112 bits (281), Expect = 1e-25
 Identities = 99/557 (17%), Positives = 175/557 (31%), Gaps = 94/557 (16%)

Query: 247 CNNSILSSV--ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 304
            +N  L+ V         +L LS N +   +   +   LS L  L ++ N I +++    
Sbjct: 38  YSNRNLTHVPKDLPPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFH-V 95

Query: 305 YRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL 363
           +   + L+ LD+S       N+L   S     SL  L L  N+F   L   +E  N T L
Sbjct: 96  FLFNQDLEYLDVS------HNRLQNISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKL 148

Query: 364 EYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI 423
            +L L  +       + +      + +L +S   ++ V         +SL+  +     +
Sbjct: 149 TFLGLSAAK-----FRQLD--LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201

Query: 424 ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP 483
             + + L                        S  ++  +  L HLQ   I  ND      
Sbjct: 202 VFHPNSLF-----------------------SVQVNMSVNALGHLQLSNIKLNDENCQRL 238

Query: 484 WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLK 543
               +  +     ++        +    V L                      F    ++
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-------------------FFWPRPVE 279

Query: 544 IFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKM 603
             +  N  I   I+       +  LKSL +         F                    
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF-------------------- 319

Query: 604 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 663
                  L     ++    L          +   S     FL+ + N F      +    
Sbjct: 320 ---SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCST 375

Query: 664 LPSLVYFNISMNALDGSIPSSFG---NVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS 720
           L  L    +  N L  +         N+  L+ LD+S N L     D       ++  L+
Sbjct: 376 LKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 721 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 780
           LS+N L G +F  +     ++ L L  N     IP+ ++   +L+ L + +N L   +P 
Sbjct: 435 LSSNMLTGSVFRCL--PPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPD 490

Query: 781 -WLGNLKGLQHIVMPKN 796
                L  LQ+I +  N
Sbjct: 491 GVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (260), Expect = 4e-23
 Identities = 89/512 (17%), Positives = 166/512 (32%), Gaps = 91/512 (17%)

Query: 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV--ARLSS 260
               + L VL +S N I +L     +        L+ LD+  N      L ++    ++S
Sbjct: 72  ISFLSELRVLRLSHNRIRSL--DFHV--FLFNQDLEYLDVSHNR-----LQNISCCPMAS 122

Query: 261 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 320
           L  L LS N        KEF +L+ L  L ++  +   +++            LDL    
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH 182

Query: 321 IRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQS 380
           I+ G        S    NT  L       +L + Q   +   L +L L +  L+    Q 
Sbjct: 183 IKGG-----ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 381 IGSIF------PSLKNLSMSGCEV--NGVLSGQGFPHFKSLEHLDMRFARIA--LNTSFL 430
           + +        P+L N+++   E      +    F   + +E+L++    I   ++    
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 431 QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT 490
                ++ SL    +       +   +        A +    +  +D       C  + +
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSV----FAEMNIKMLSISDTPFIHMVCPPSPS 353

Query: 491 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 550
           S   L+ + N  T          L  ++ L L  N  +   +   +   +K         
Sbjct: 354 SFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK---NFFKVALMTK--------- 400

Query: 551 EINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 610
                            + SL       +S+                         +   
Sbjct: 401 ----------------NMSSLETLDVSLNSLNS---------------------HAYDR- 422

Query: 611 LLENNTKLEFLYLVNDSL-AGPF-RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLV 668
                  +  L L ++ L    F  LP      ++ LD+ NN     IP ++   L +L 
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCLPPK----VKVLDLHNNRIM-SIPKDV-THLQALQ 476

Query: 669 YFNISMNALDGSIP-SSFGNVIFLQFLDLSNN 699
             N++ N L  S+P   F  +  LQ++ L +N
Sbjct: 477 ELNVASNQL-KSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  103 bits (259), Expect = 6e-23
 Identities = 90/468 (19%), Positives = 171/468 (36%), Gaps = 39/468 (8%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSL-- 131
           L     +   +L  L LS N I   + +  +       +L+ LD+S     +N L ++  
Sbjct: 67  LRMPDISFLSELRVLRLSHNRIR--SLDFHV--FLFNQDLEYLDVS-----HNRLQNISC 117

Query: 132 ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLS-KLKSLGLS 190
             ++SLR L LS N  +     KE  +L  L  L +   K  +  +       L  + L 
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 191 GTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSK-LKKLDLRGNLCNN 249
              +       E     N  VL +  +      V   +   +     L  + L    C  
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 250 SILSSVARLSSLTSLHLSHNILQGSIDAK----EFDSLSNLEELDINDNEI-DNVEVSRG 304
            +          T L+++   ++ +        +F     +E L+I +  I + ++    
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 305 YRGLRKLKSLDLSGVGIRDGNKLLQSMGS-FPSLNTLHLESNNFTATLTTTQELHNFTNL 363
                 LKSL +  V  +      +++ S F  +N   L  ++            + ++ 
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP--PSPSSF 355

Query: 364 EYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV--LSGQGFP--HFKSLEHLDMR 419
            +L    +        S+     +LK L     + NG+           +  SLE LD+ 
Sbjct: 356 TFLNFTQN----VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411

Query: 420 FARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR 479
               +LN+           S+  L+LS + L  +  R L         ++ L + NN + 
Sbjct: 412 LN--SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL------PPKVKVLDLHNNRIM 463

Query: 480 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 527
            S+P  + +  +L+ L+V+ NQL  S+       LTS++ + L +N +
Sbjct: 464 -SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  102 bits (256), Expect = 1e-22
 Identities = 71/428 (16%), Positives = 153/428 (35%), Gaps = 34/428 (7%)

Query: 636  IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 695
            I     LR L +S+N  +  +   +      L Y ++S N L  +I      +  L+ LD
Sbjct: 72   ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLD 127

Query: 696  LSNNKLT----GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR-NLRWLLLEGNHF 750
            LS N        +   +L      L FL LS    +      +  L  +   L L   H 
Sbjct: 128  LSFNDFDVLPVCKEFGNL----TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 751  VGEIPQSLS--KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP----IPV 804
             G   +SL     + L  ++  N+  S ++   +  L  LQ   +  N            
Sbjct: 184  KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 805  EFCRLDSLQILDISDNNISG----SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS-- 858
            E  R  +L  + +     +      L   F+P  ++ +++    +  ++    F      
Sbjct: 244  ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 859  --SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 916
              SL+   +       S        ++++   L+ ++      +     +    L+ + N
Sbjct: 304  LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 917  NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK-KILEIFEFTTKNIAY 975
                 +          ++           K  F ++    ++   + L++   +  + AY
Sbjct: 364  VFTDSVFQGCSTLKRLQTLILQR---NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 976  AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 1035
                     +  L+LS N L G +   +    +++ L+L +N +  +IP   ++L+ ++ 
Sbjct: 421  DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQE 477

Query: 1036 LDLSYNKL 1043
            L+++ N+L
Sbjct: 478  LNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =   99 bits (249), Expect = 1e-21
 Identities = 85/459 (18%), Positives = 171/459 (37%), Gaps = 41/459 (8%)

Query: 85  LESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSD 144
            ++L LS N+I+     +    +S L+ L++L LS N   +           L  L +S 
Sbjct: 54  TKALSLSQNSISELRMPD----ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109

Query: 145 NRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSK---GLSKLKSLGLSGTGFKGTFDVR 201
           NRL+ +I    + SLR    LD+  N  D   V K    L+KL  LGLS   F+      
Sbjct: 110 NRLQ-NISCCPMASLR---HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---- 161

Query: 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 261
           +     +L +  +  + + +  +  G     ++     L L  +  +   +     +++L
Sbjct: 162 DLLPVAHLHLSCILLD-LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220

Query: 262 TSLHLSHNILQGSIDAKEFDSLSN------------LEELDINDNEIDNVEVSRGYRGLR 309
             L LS+  L    + +   +  +            L+ ++        +      R + 
Sbjct: 221 GHLQLSNIKLN-DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 310 KLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLD 369
            L   +L+     D  +   S  +  SL   H+++  F  +      +  F  +    L 
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV--FAEMNIKMLS 337

Query: 370 DSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSF 429
            S     +         S   L+ +       +   G    K L+ L ++   +      
Sbjct: 338 ISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGL----KN 391

Query: 430 LQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT 489
              +     ++  L     +L + +S   D+       +  L + +N L GS+  CL   
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--P 449

Query: 490 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 528
             +++LD+  N++  SI    + HL +++EL +++N  +
Sbjct: 450 PKVKVLDLHNNRIM-SIPKD-VTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.5 bits (209), Expect = 6e-17
 Identities = 63/379 (16%), Positives = 113/379 (29%), Gaps = 26/379 (6%)

Query: 693  FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFV 751
             +D SN  LT  +P  L       + LSLS NS+   +       L  LR L L  N   
Sbjct: 35   MVDYSNRNLT-HVPKDL---PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI- 88

Query: 752  GEIPQSL-SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRL 809
              +   +      L+ L +++N L   I      +  L+H+ +  N  +  P+  EF  L
Sbjct: 89   RSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNL 145

Query: 810  DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 869
              L  L +S              L +  + L     H +  E       +   L L ++ 
Sbjct: 146  TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205

Query: 870  LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT 929
             +         ++ L HL L++  L  E   +L           +  N+           
Sbjct: 206  NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265

Query: 930  TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 989
            ++                  +I          I E  +       + Y    L  L    
Sbjct: 266  SV----KLFQFFWPRPVEYLNIYN------LTITERIDREE----FTYSETALKSLMIEH 311

Query: 990  LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 1049
            +     +            +    LS ++      +   +      L+ + N  +  + +
Sbjct: 312  VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 1050 QLVDLNTLAIFIVAYNNLS 1068
                L  L   I+  N L 
Sbjct: 372  GCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.8 bits (207), Expect = 1e-16
 Identities = 67/421 (15%), Positives = 144/421 (34%), Gaps = 67/421 (15%)

Query: 662  DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 721
            D+ P     ++S N++          +  L+ L LS+N++   +  H+ +   +LE+L +
Sbjct: 49   DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV 107

Query: 722  SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 781
            S+N L+        ++                   S    +SL+ L L+ N+        
Sbjct: 108  SHNRLQ--------NI-------------------SCCPMASLRHLDLSFNDFD------ 134

Query: 782  LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 841
                               P+  EF  L  L  L +S              L +  + L 
Sbjct: 135  -----------------VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 842  KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ 901
                H +  E       +   L L ++  +         ++ L HL L++  L  E   +
Sbjct: 178  LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 902  LCRLNQ------------LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF 949
            L                 LQ ++ +      L    +     + +  N +  ++  +  F
Sbjct: 238  LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 950  SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 1009
            + S  + +++  ++E  +      +      V + +    LS +           + +  
Sbjct: 298  TYS--ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

Query: 1010 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNNL 1067
              LN + N  T ++    S L+ +++L L  N L    K+     ++++L    V+ N+L
Sbjct: 356  TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415

Query: 1068 S 1068
            +
Sbjct: 416  N 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.0 bits (161), Expect = 4e-11
 Identities = 43/234 (18%), Positives = 91/234 (38%), Gaps = 26/234 (11%)

Query: 45  QWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNI----AGCAE 100
           + +  E + +   +  L +    +  + +   +L++ F ++    LS ++       C  
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP- 349

Query: 101 NEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEG-SIDVKELDSL 159
                     ++   L+ + N F ++V    + L  L++L L  N L+          ++
Sbjct: 350 -------PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402

Query: 160 RDLEELDIGGNKIDKFMVSK---GLSKLKSLGLSGTGFKGTFDVREFDSF-NNLEVLDMS 215
             LE LD+  N ++     +       +  L LS     G+     F      ++VLD+ 
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV----FRCLPPKVKVLDLH 458

Query: 216 GNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHN 269
            N I ++  P+ +     L  L++L++  N   +       RL+SL  + L  N
Sbjct: 459 NNRIMSI--PKDVT---HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  116 bits (291), Expect = 1e-26
 Identities = 75/379 (19%), Positives = 114/379 (30%), Gaps = 103/379 (27%)

Query: 666  SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 725
                 N+  + L  ++P        +  L + +N LT  +P         L  L +S N 
Sbjct: 41   GNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPALPP----ELRTLEVSGNQ 92

Query: 726  LKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 785
            L   +      L  L        H            S L  L++  N L+  +P     L
Sbjct: 93   LT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVLPPGL 143

Query: 786  KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNML 845
            + L    +  N L   +P        L  L   +N ++ SLP                  
Sbjct: 144  QELS---VSDNQLAS-LPALPS---ELCKLWAYNNQLT-SLPMLP--------------- 180

Query: 846  HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 905
                        S L  L +S N L  S+P      S+L  L   +N L   +P      
Sbjct: 181  ------------SGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPALPS-- 221

Query: 906  NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILE 964
              L+ L +S N L  L     +   L  S N  +S P                       
Sbjct: 222  -GLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM---------------------- 258

Query: 965  IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 1024
                            + S L  L +  N+L   +P  + +L+   T+NL  N L+    
Sbjct: 259  ----------------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS---E 298

Query: 1025 LTFSNLRHIESLDLSYNKL 1043
             T   LR I S       +
Sbjct: 299  RTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (283), Expect = 8e-26
 Identities = 74/352 (21%), Positives = 119/352 (33%), Gaps = 47/352 (13%)

Query: 593 LKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 652
                +     +   P+ L  +   +  L + +++L     LP      LR L+VS N  
Sbjct: 42  NAVLNVGE-SGLTTLPDCLPAH---ITTLVIPDNNLT---SLP-ALPPELRTLEVSGNQL 93

Query: 653 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC 712
              +PV     L  L  F+  +  L             L  L +  N+LT  +P      
Sbjct: 94  T-SLPVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP-- 141

Query: 713 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNN 772
              L+ LS+S+N L     S       L  L    N     +P   S    L+ L +++N
Sbjct: 142 --GLQELSVSDNQLA----SLPALPSELCKLWAYNNQLT-SLPMLPS---GLQELSVSDN 191

Query: 773 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 832
            L+  +P     L  L       N L   +P        L+ L +S N ++ SLP    P
Sbjct: 192 QLA-SLPTLPSELYKLW---AYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL--P 240

Query: 833 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 892
             +K++ +S N L   L        S L++L +  N L   +P+ +  LS  + +NL  N
Sbjct: 241 SELKELMVSGNRL-TSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 893 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP 944
            L       L  +                  S    T        +      
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  112 bits (281), Expect = 2e-25
 Identities = 72/354 (20%), Positives = 112/354 (31%), Gaps = 98/354 (27%)

Query: 691  LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 750
               L++  + LT  +PD L     ++  L + +N+L     S       LR L + GN  
Sbjct: 42   NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLT----SLPALPPELRTLEVSGNQL 93

Query: 751  VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 810
               +P        L        +L    P     L  L    +  N L   +PV      
Sbjct: 94   T-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLTS-LPVL---PP 141

Query: 811  SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 870
             LQ L +SDN ++ SLP+                             S L  L    N L
Sbjct: 142  GLQELSVSDNQLA-SLPALP---------------------------SELCKLWAYNNQL 173

Query: 871  NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 930
              S+P      S L  L+++ N L   +P     L +L   +    +L  L         
Sbjct: 174  T-SLPM---LPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGL---KE 225

Query: 931  LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 990
            L  S N                        ++  +                 S L  L +
Sbjct: 226  LIVSGN------------------------RLTSLPVL-------------PSELKELMV 248

Query: 991  SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
            S N+L   +P     L     L++  N LT  +P +  +L    +++L  N LS
Sbjct: 249  SGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (262), Expect = 3e-23
 Identities = 76/430 (17%), Positives = 129/430 (30%), Gaps = 105/430 (24%)

Query: 633  RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 692
            ++    +     L+V  +     +P  +      +    I  N L  S+P+       L+
Sbjct: 33   KMRACLNNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPALPPE---LR 84

Query: 693  FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 752
             L++S N+LT  +P       + L   S     L             L  L + GN    
Sbjct: 85   TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQL-T 134

Query: 753  EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
             +P        L+ L +++N L+  +P     L  L       N L   +P+       L
Sbjct: 135  SLPVLPP---GLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLTS-LPML---PSGL 183

Query: 813  QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 872
            Q L +SDN ++ SLP+                             S L  L    N L  
Sbjct: 184  QELSVSDNQLA-SLPTLP---------------------------SELYKLWAYNNRLT- 214

Query: 873  SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 932
            S+P      S L  L ++ N L   +P      ++L+ L +S N L  L        +L 
Sbjct: 215  SLPALP---SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPMLPSGLLSLS 267

Query: 933  ESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 991
               N  +  P+                      +                LS    ++L 
Sbjct: 268  VYRNQLTRLPE---------------------SLIH--------------LSSETTVNLE 292

Query: 992  CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS-YNKLSGKIPRQ 1050
             N L       +  +T           +        S  R   +L L+  + L      +
Sbjct: 293  GNPLSERTLQALREITS---APGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGE 349

Query: 1051 LVDLNTLAIF 1060
                +   +F
Sbjct: 350  PAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.4 bits (245), Expect = 4e-21
 Identities = 68/416 (16%), Positives = 125/416 (30%), Gaps = 64/416 (15%)

Query: 84  QLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSL-ARLSSLRSLYL 142
               L++  + +    +           ++  L +  N      L+SL A    LR+L +
Sbjct: 41  GNAVLNVGESGLTTLPDCLP-------AHITTLVIPDNN-----LTSLPALPPELRTLEV 88

Query: 143 SDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVRE 202
           S N+L  S+       L +L         +         S L  L + G           
Sbjct: 89  SGNQLT-SLP-VLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLT-----SL 136

Query: 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 262
                 L+ L +S N++ +L  P     L +L             NN + S     S L 
Sbjct: 137 PVLPPGLQELSVSDNQLASL--PALPSELCKL----------WAYNNQLTSLPMLPSGLQ 184

Query: 263 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 322
            L +S N L  S+        S L +L   +N + ++           LK L +S     
Sbjct: 185 ELSVSDNQLA-SLP----TLPSELYKLWAYNNRLTSLPAL-----PSGLKELIVS----- 229

Query: 323 DGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQEL-HNFTNLEYLTLDDSSLHISLLQSI 381
            GN+L         L  L +  N  T        L    + L  L++  + L   L +S+
Sbjct: 230 -GNRLTSLPVLPSELKELMVSGNRLT-------SLPMLPSGLLSLSVYRNQLT-RLPESL 280

Query: 382 GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLK 441
                S   +++ G  ++   + Q      S         R  +  +       ++    
Sbjct: 281 IH-LSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338

Query: 442 YLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 497
              L  +  G  +            +     +  + L  +  +        +I   
Sbjct: 339 ADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSW 394

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.3 bits (242), Expect = 8e-21
 Identities = 63/371 (16%), Positives = 115/371 (30%), Gaps = 70/371 (18%)

Query: 207 NNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHL 266
           N   VL++  + +  L  P  L      + +  L +     +N++ S  A    L +L +
Sbjct: 40  NGNAVLNVGESGLTTL--PDCL-----PAHITTLVIP----DNNLTSLPALPPELRTLEV 88

Query: 267 SHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNK 326
           S N L  S+       L  L         +  +           L  L +       GN+
Sbjct: 89  SGNQLT-SLPV-LPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIF------GNQ 132

Query: 327 LLQSMGSFPSLNTLHLESNNFT------ATLTTTQELHN--------FTNLEYLTLDDSS 372
           L       P L  L +  N         + L      +N         + L+ L++ D+ 
Sbjct: 133 LTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192

Query: 373 LHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQI 432
                L S+ ++   L  L      +  + +         L+ L        ++ + L  
Sbjct: 193 -----LASLPTLPSELYKLWAYNNRLTSLPALPS-----GLKELI-------VSGNRLTS 235

Query: 433 IGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSL 492
           +      LK L +SG     N    L         L  L +  N L   LP  L + +S 
Sbjct: 236 LPVLPSELKELMVSG-----NRLTSLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSE 286

Query: 493 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 552
             +++  N L+   +   L  +TS      S    R  ++       ++     A +  +
Sbjct: 287 TTVNLEGNPLS-ERTLQALREITSAPG--YSGPIIRFDMAGASAPRETRALHLAAADWLV 343

Query: 553 NGEINESHSLT 563
                E     
Sbjct: 344 PAREGEPAPAD 354

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.2 bits (234), Expect = 7e-20
 Identities = 69/413 (16%), Positives = 115/413 (27%), Gaps = 89/413 (21%)

Query: 411 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 470
                L++  + +   T+    +      +  L +       N+   L         L+ 
Sbjct: 40  NGNAVLNVGESGL---TTLPDCLP---AHITTLVIPD-----NNLTSLPALPP---ELRT 85

Query: 471 LYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-I 529
           L +  N L  SLP        L I       L            + + +L +  N    +
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTSL 136

Query: 530 PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF-QLKSLSLSSNYGDSVTFPKFLY 588
           PV          L+     +N++        SL     +L  L   +N            
Sbjct: 137 PVLP------PGLQELSVSDNQLA-------SLPALPSELCKLWAYNN------------ 171

Query: 589 HQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVS 648
                          +   P       + L+ L + ++ LA    LP      L  L   
Sbjct: 172 --------------QLTSLPMLP----SGLQELSVSDNQLA---SLP-TLPSELYKLWAY 209

Query: 649 NNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 708
           NN     +P         L    +S N L  S+P        L+ L +S N+LT  +P  
Sbjct: 210 NNRLT-SLPALPS----GLKELIVSGNRL-TSLPVLPSE---LKELMVSGNRLT-SLPML 259

Query: 709 LAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 768
            +     L  LS+  N L   +   +  L +   + LEGN    E      +  +    Y
Sbjct: 260 PS----GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGY 313

Query: 769 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 821
                                H+    + L      E    D   +    DN 
Sbjct: 314 SGPIIRFDMAGASAPRETRALHLAAA-DWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.1 bits (226), Expect = 8e-19
 Identities = 62/419 (14%), Positives = 118/419 (28%), Gaps = 91/419 (21%)

Query: 132 ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSG 191
              +    L + ++ L  ++          +  L I  N +                   
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPD---CLPAHITTLVIPDNNLTSLP--------------- 77

Query: 192 TGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI 251
                            L  L++SGN++ +L  P     L  LS         +     +
Sbjct: 78  ------------ALPPELRTLEVSGNQLTSL--PVLPPGLLELSIF-------SNPLTHL 116

Query: 252 LSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 311
            +     S L  L +  N L  S+          L+EL ++DN++ ++          +L
Sbjct: 117 PAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLPAL-----PSEL 163

Query: 312 KSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS 371
             L          N+L         L  L +  N    +L T       + L  L   ++
Sbjct: 164 CKLWAY------NNQLTSLPMLPSGLQELSVSDNQLA-SLPTL-----PSELYKLWAYNN 211

Query: 372 SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 431
            L  SL          LK L +SG  +  +           L+ L        ++ + L 
Sbjct: 212 RL-TSLPALPS----GLKELIVSGNRLTSL-----PVLPSELKELM-------VSGNRLT 254

Query: 432 IIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 491
            +      L  LS+       N    L + L  L+    + ++ N L             
Sbjct: 255 SLPMLPSGLLSLSVYR-----NQLTRLPESLIHLSSETTVNLEGNPLS-ERTLQ--ALRE 306

Query: 492 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 550
           +         +      +          L L+   + +P          +  +F  ++N
Sbjct: 307 ITSAPGYSGPII-RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.7 bits (225), Expect = 9e-19
 Identities = 54/289 (18%), Positives = 95/289 (32%), Gaps = 55/289 (19%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
              + +L +  NN+                 L+ L++SGN    ++      L  L    
Sbjct: 60  PAHITTLVIPDNNLTSLPAL--------PPELRTLEVSGNQL-TSLPVLPPGLLELSIFS 110

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVR 201
                L              L +L I GN++           L+ L +S           
Sbjct: 111 NPLTHLPALPS--------GLCKLWIFGNQLTSL--PVLPPGLQELSVSDNQLA-----S 155

Query: 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 261
                + L  L    N++ +L  P     L  L          ++ +N + S     S L
Sbjct: 156 LPALPSELCKLWAYNNQLTSL--PMLPSGLQEL----------SVSDNQLASLPTLPSEL 203

Query: 262 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGI 321
             L   +N L  S+ A      S L+EL ++ N + ++ V        +LK L +S    
Sbjct: 204 YKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTSLPVL-----PSELKELMVS---- 249

Query: 322 RDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 370
             GN+L         L +L +  N  T      + L + ++   + L+ 
Sbjct: 250 --GNRLTSLPMLPSGLLSLSVYRNQLT---RLPESLIHLSSETTVNLEG 293

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.9 bits (215), Expect = 1e-17
 Identities = 58/263 (22%), Positives = 90/263 (34%), Gaps = 66/263 (25%)

Query: 807  CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866
            C  +   +L++ ++ ++ +LP C  P  I  + +  N L   L          L TL++S
Sbjct: 37   CLNNGNAVLNVGESGLT-TLPDCL-PAHITTLVIPDNNLT-SLPA----LPPELRTLEVS 89

Query: 867  YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 926
             N L  S+P    GL +LS  +    +L           + L  L +  N L  L     
Sbjct: 90   GNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVLPP 141

Query: 927  DNTTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 985
                L  S N  +S P  P +                                      L
Sbjct: 142  GLQELSVSDNQLASLPALPSE--------------------------------------L 163

Query: 986  AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 1045
              L    N+L   +P     L   Q L++S N L  ++P   S L     L    N+L+ 
Sbjct: 164  CKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELY---KLWAYNNRLT- 214

Query: 1046 KIPRQLVDLNTLAIFIVAYNNLS 1068
             +P     L  L   IV+ N L+
Sbjct: 215  SLPALPSGLKEL---IVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.9 bits (197), Expect = 2e-15
 Identities = 52/295 (17%), Positives = 92/295 (31%), Gaps = 55/295 (18%)

Query: 78  LFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSL-ARLSS 136
           L     +L        ++            +  + L  L + GN      L+SL      
Sbjct: 99  LPPGLLELSIFSNPLTHLP-----------ALPSGLCKLWIFGNQ-----LTSLPVLPPG 142

Query: 137 LRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKG 196
           L+ L +SDN+L  S+         +L +L    N++    +    S L+ L +S      
Sbjct: 143 LQELSVSDNQLA-SLP----ALPSELCKLWAYNNQLTS--LPMLPSGLQELSVSDNQLA- 194

Query: 197 TFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA 256
           +         + L  L    N + +L  P     L  L           +  N + S   
Sbjct: 195 SLP----TLPSELYKLWAYNNRLTSL--PALPSGLKEL----------IVSGNRLTSLPV 238

Query: 257 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDL 316
             S L  L +S N L  S+        S L  L +  N++    +      L    +++L
Sbjct: 239 LPSELKELMVSGNRLT-SLP----MLPSGLLSLSVYRNQL--TRLPESLIHLSSETTVNL 291

Query: 317 SGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 370
                  GN L + ++ +   + +    S                T   +L   D
Sbjct: 292 E------GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 77.6 bits (191), Expect = 1e-14
 Identities = 61/316 (19%), Positives = 102/316 (32%), Gaps = 62/316 (19%)

Query: 82  FQQLESLDLSWNNIAGC-AENEGLEGLSRLNN-----------LKMLDLSGNAF------ 123
             +L +L++S N +        GL  LS  +N           L  L + GN        
Sbjct: 80  PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL 139

Query: 124 ---------NNNVLSSL-ARLSSLRSLYLSDNRLEGSIDVKEL-DSLRDLEELDIGGNKI 172
                    ++N L+SL A  S L  L+  +N+L        L      L+EL +  N++
Sbjct: 140 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT------SLPMLPSGLQELSVSDNQL 193

Query: 173 DKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLS 232
                    S+L  L         +         + L+ L +SGN + +L  P       
Sbjct: 194 ASL--PTLPSELYKLWAYNNRLT-SLP----ALPSGLKELIVSGNRLTSL--P------V 238

Query: 233 RLSKLKKLDLRGNLCNNSILSSV-ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI 291
             S+LK+L + GN      L+S+    S L SL +  N L   +       LS+   +++
Sbjct: 239 LPSELKELMVSGNR-----LTSLPMLPSGLLSLSVYRNQLT-RLPE-SLIHLSSETTVNL 291

Query: 292 NDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATL 351
             N +    +       R++ S       I   +    S         L        A  
Sbjct: 292 EGNPLSERTLQAL----REITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPARE 347

Query: 352 TTTQELHNFTNLEYLT 367
                   +       
Sbjct: 348 GEPAPADRWHMFGQED 363

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.2 bits (182), Expect = 1e-13
 Identities = 73/451 (16%), Positives = 133/451 (29%), Gaps = 94/451 (20%)

Query: 336 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 395
               L++  +  T   T    L    ++  L + D++L      S+ ++ P L+ L +SG
Sbjct: 41  GNAVLNVGESGLT---TLPDCL--PAHITTLVIPDNNL-----TSLPALPPELRTLEVSG 90

Query: 396 CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSS 455
            ++  +      P    L         +                L  L + G+ L +   
Sbjct: 91  NQLTSL--PVLPPGLLELSIFSNPLTHLP----------ALPSGLCKLWIFGNQLTSLPV 138

Query: 456 RILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 515
                       LQEL + +N L  SLP   +    L  L    NQLT S+        +
Sbjct: 139 LP--------PGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPML----PS 181

Query: 516 SIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLS 574
            ++EL +S+N    +P     L    KL  ++ +   +    +          LK L +S
Sbjct: 182 GLQELSVSDNQLASLPTLPSEL---YKLWAYNNRLTSLPALPS---------GLKELIVS 229

Query: 575 SNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRL 634
            N                           +   P       ++L+ L +  + L     L
Sbjct: 230 GN--------------------------RLTSLPVLP----SELKELMVSGNRLT---SL 256

Query: 635 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 694
           P+     L  L V  N     +P  +   L S    N+  N L      +      +   
Sbjct: 257 PMLPSG-LLSLSVYRNQLT-RLPESLIH-LSSETTVNLEGNPLSERTLQALRE---ITSA 310

Query: 695 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI 754
              +  +        +           + + L              RW +          
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD--RWHMFGQEDNADAF 368

Query: 755 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 785
              L + S  +  ++ +     +I  WL  L
Sbjct: 369 SLFLDRLSETEN-FIKDAGFKAQISSWLAQL 398

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.8 bits (137), Expect = 3e-08
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 982  LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041
             +  A L++  + L   +P  +     I TL +  NNLT ++P     LR   +L++S N
Sbjct: 39   NNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91

Query: 1042 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWT 1075
            +L+  +P     L  L+IF     +L        
Sbjct: 92   QLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLC 124

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 53/180 (29%)

Query: 900  IQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNN-NSSPDKPFKTSFSISGPQGS 957
            ++ C  N   +L++ ++ L  L      + TTL    NN  S P                
Sbjct: 34   MRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--------------- 78

Query: 958  VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 1017
                                   +   L  L++S N+L   +P     L  +   +    
Sbjct: 79   -----------------------LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114

Query: 1018 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077
            +L        +    +  L +  N+L+  +P     L  L    V+ N L+  +P   ++
Sbjct: 115  HLP-------ALPSGLCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-SLPALPSE 162

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  113 bits (285), Expect = 1e-26
 Identities = 58/244 (23%), Positives = 98/244 (40%), Gaps = 25/244 (10%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
                 L+L  N I     N        L +L++L LS N      + +   L++L +L 
Sbjct: 63  STNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGTGFKGTFD 199
           L DNRL  +I       L  L+EL +  N I+         +  L+ L L          
Sbjct: 119 LFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177

Query: 200 VREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV---- 255
              F+  +NL  L+++   +        +  L+ L KL +LDL GN      LS++    
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLRE------IPNLTPLIKLDELDLSGNH-----LSAIRPGS 226

Query: 256 -ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSL 314
              L  L  L +  + +Q  I+   FD+L +L E+++  N +  +     +  L  L+ +
Sbjct: 227 FQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLP-HDLFTPLHHLERI 284

Query: 315 DLSG 318
            L  
Sbjct: 285 HLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  112 bits (283), Expect = 2e-26
 Identities = 58/242 (23%), Positives = 97/242 (40%), Gaps = 13/242 (5%)

Query: 691 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 749
              +      L  E+PD ++    N   L+L  N ++  I    F  LR+L  L L  NH
Sbjct: 45  FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH 99

Query: 750 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCR 808
                  + +  ++L  L L +N L+         L  L+ + +  N +E  IP   F R
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNR 158

Query: 809 LDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866
           + SL+ LD+ +      +    F  L +++ ++L+   L    +         L  LDLS
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLS 215

Query: 867 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 926
            N+L+   P    GL  L  L +  + ++         L  L  ++L+ NNL  L    F
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

Query: 927 DN 928
             
Sbjct: 276 TP 277

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  110 bits (277), Expect = 1e-25
 Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 23/243 (9%)

Query: 112 NLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNK 171
           N ++L+L  N      ++S   L  L  L LS N +  +I++   + L +L  L++  N+
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 172 IDKF--MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSG-NEIDNLVVPQGL 228
           +          LSKLK L L     + +     F+   +L  LD+     +  +   +G 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYI--SEGA 180

Query: 229 ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 288
                LS L+ L+L     N   + ++  L  L  L LS N L  +I    F  L +L++
Sbjct: 181 --FEGLSNLRYLNLAMC--NLREIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQK 235

Query: 289 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL----LQSMGSFPSLNTLHLES 344
           L +  ++I  +E    +  L+ L  ++L+       N L             L  +HL  
Sbjct: 236 LWMIQSQIQVIE-RNAFDNLQSLVEINLA------HNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 345 NNF 347
           N +
Sbjct: 289 NPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  110 bits (276), Expect = 2e-25
 Identities = 59/260 (22%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 662 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 721
            I  +    N+  N +     +SF ++  L+ L LS N +   I         NL  L L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119

Query: 722 SNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 780
            +N L   I +  F  L  L+ L L  N        + ++  SL+ L L        I  
Sbjct: 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 781 -WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 839
                L  L+++ +   +L   IP     L  L  LD+S N++S                
Sbjct: 179 GAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS---------------- 220

Query: 840 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 899
                    ++ G+F     L  L +  + +     +  D L  L  +NLAHNNL     
Sbjct: 221 --------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272

Query: 900 IQLCRLNQLQLLDLSDNNLH 919
                L+ L+ + L  N  +
Sbjct: 273 DLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  108 bits (271), Expect = 6e-25
 Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 36/234 (15%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           +  + F   + LE L LS N+I            + L NL  L+L      +N L+++  
Sbjct: 79  IKVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLNTLELF-----DNRLTTIPN 129

Query: 134 -----LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGG-NKIDKFMVS--KGLSKLK 185
                LS L+ L+L +N +E SI     + +  L  LD+G   ++        +GLS L+
Sbjct: 130 GAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188

Query: 186 SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 245
            L L+    +   ++        L+ LD+SGN +  +    G      L  L+KL +  +
Sbjct: 189 YLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAI--RPGS--FQGLMHLQKLWMIQS 241

Query: 246 LCNNSILSSVAR-----LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
                 +  + R     L SL  ++L+HN L   +    F  L +LE + ++ N
Sbjct: 242 Q-----IQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (250), Expect = 3e-22
 Identities = 60/287 (20%), Positives = 102/287 (35%), Gaps = 47/287 (16%)

Query: 762  SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 821
            +    +     NL  ++P  +      + + + +N ++      F  L  L+IL +S N+
Sbjct: 43   NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 822  ISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 880
            I       F  L ++  + L  N L   +  G F   S L  L L  N +        + 
Sbjct: 100  IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 881  LSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE---SYN 936
            +  L  L+L        +       L+ L+ L+L+  NL   IP+      L E   S N
Sbjct: 159  IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGN 217

Query: 937  NNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 995
            + S+     F+                                   L  L  L +  +++
Sbjct: 218  HLSAIRPGSFQG----------------------------------LMHLQKLWMIQSQI 243

Query: 996  VGHIPPQ-IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041
               I      NL  +  +NL+HNNLT      F+ L H+E + L +N
Sbjct: 244  Q-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 53/251 (21%), Positives = 98/251 (39%), Gaps = 34/251 (13%)

Query: 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR-----LSS 260
             N  +L++  N+I  +           L  L+ L L  N      + ++       L++
Sbjct: 63  STNTRLLNLHENQIQII--KVNS--FKHLRHLEILQLSRNH-----IRTIEIGAFNGLAN 113

Query: 261 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 320
           L +L L  N L  +I    F  LS L+EL + +N I+++  S  +  +  L+ LDL    
Sbjct: 114 LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLG--- 168

Query: 321 IRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 376
             +  +L   S G+F    +L  L+L   N    L     L     L+ L L  + L  +
Sbjct: 169 --ELKRLSYISEGAFEGLSNLRYLNLAMCN----LREIPNLTPLIKLDELDLSGNHLS-A 221

Query: 377 LLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGES 436
           +          L+ L M   ++  V+    F + +SL  +++    +   T     +   
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL---TLLPHDLFTP 277

Query: 437 MPSLKYLSLSG 447
           +  L+ + L  
Sbjct: 278 LHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 61/289 (21%), Positives = 110/289 (38%), Gaps = 66/289 (22%)

Query: 811  SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 869
            + ++L++ +N I     + F  L  ++ + LS+N +   ++ G F   ++L TL+L  N 
Sbjct: 65   NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 870  LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL-CRLNQLQLLDLSDNN-LHGLIPSCFD 927
            L          LS+L  L L +N +E  +P     R+  L+ LDL +   L  +    F+
Sbjct: 124  LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 928  NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 987
                                                                  LS L  
Sbjct: 183  G-----------------------------------------------------LSNLRY 189

Query: 988  LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
            L+L+   L   IP  +  L ++  L+LS N+L+   P +F  L H++ L +  +++    
Sbjct: 190  LNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 1048 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 1093
                 +L +L    +A+NNL+  +P     F   +         NP+ C
Sbjct: 248  RNAFDNLQSLVEINLAHNNLT-LLPHDL--FTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 3e-20
 Identities = 63/288 (21%), Positives = 105/288 (36%), Gaps = 55/288 (19%)

Query: 246 LCNNSILSSV-ARLS-SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSR 303
           +C    L  V   +S +   L+L  N +Q  I    F  L +LE L ++ N I  +E+  
Sbjct: 49  ICVRKNLREVPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEI-- 105

Query: 304 GYRGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNF 360
                                       G+F    +LNTL L  N  T            
Sbjct: 106 ----------------------------GAFNGLANLNTLELFDNRLTTIPNGA--FVYL 135

Query: 361 TNLEYLTLDDSSLHISLLQSIGSIF---PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 417
           + L+ L L   +  I  + S    F   PSL+ L +   +    +S   F    +L +L+
Sbjct: 136 SKLKELWL--RNNPIESIPS--YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 418 MRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND 477
           +    +    +        +  L  L LSG+ L    S I       L HLQ+L++  + 
Sbjct: 192 LAMCNLREIPNL-----TPLIKLDELDLSGNHL----SAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 478 LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
           ++        N  SL  ++++ N LT  +       L  +E + L +N
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.7 bits (215), Expect = 9e-18
 Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 25/207 (12%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA 132
            +    F    +L+ L L  N I            +R+ +L+ LDL         LS ++
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSY----AFNRIPSLRRLDLG----ELKRLSYIS 177

Query: 133 R-----LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLK 185
                 LS+LR L L+   L    ++  L  L  L+ELD+ GN +        +GL  L+
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 186 SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 245
            L +  +  +   +   FD+  +L  ++++ N +  L  P  L   + L  L+++ L  N
Sbjct: 235 KLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLL--PHDL--FTPLHHLERIHLHHN 289

Query: 246 --LCNNSILSSVARLSSLTSLHLSHNI 270
              CN  IL     +  +   + +   
Sbjct: 290 PWNCNCDILWLSWWIKDMAPSNTACCA 316

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 2e-12
 Identities = 48/274 (17%), Positives = 93/274 (33%), Gaps = 45/274 (16%)

Query: 383 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSL 440
            I  + + L++   ++  +     F H + LE L +    I      +F       + +L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAF-----NGLANL 114

Query: 441 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS-F 499
             L L  + L    + I +     L+ L+EL++ NN +     +      SLR LD+   
Sbjct: 115 NTLELFDNRL----TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 500 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINES 559
            +L+  IS      L+++  L L+  + R    +  L    KL   D   N +       
Sbjct: 171 KRLS-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL--SAIRP 224

Query: 560 HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 619
            S      L+ L +  +                        I++I        +N   L 
Sbjct: 225 GSFQGLMHLQKLWMIQS-----------------------QIQVI---ERNAFDNLQSLV 258

Query: 620 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 653
            + L +++L             L  + + +N + 
Sbjct: 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.7 bits (163), Expect = 2e-11
 Identities = 40/213 (18%), Positives = 63/213 (29%), Gaps = 58/213 (27%)

Query: 858  SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 917
            ++   L+L  N +     +    L  L  L L+ N++          L  L  L+L DN 
Sbjct: 64   TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 918  LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977
            L  +    F                                                   
Sbjct: 124  LTTIPNGAFVY------------------------------------------------- 134

Query: 978  QGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIES 1035
                LS L  L L  N +   IP      +  ++ L+L        I    F  L ++  
Sbjct: 135  ----LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 1036 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068
            L+L+   L  +IP  L  L  L    ++ N+LS
Sbjct: 190  LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 998  HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 1057
             +P  I   T  + LNL  N +      +F +LRH+E L LS N +          L  L
Sbjct: 57   EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 1058 AIFIVAYNNLS 1068
                +  N L+
Sbjct: 115  NTLELFDNRLT 125

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  113 bits (284), Expect = 2e-26
 Identities = 57/244 (23%), Positives = 97/244 (39%), Gaps = 25/244 (10%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
                 L+L  NNI     +        L++L++L L  N+     + +   L+SL +L 
Sbjct: 74  PSNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGTGFKGTFD 199
           L DN L   I     + L  L EL +  N I+         +  L  L L          
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188

Query: 200 VREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV---- 255
              F+   NL+ L++    I +      +  L+ L  L++L++ GN         +    
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKD------MPNLTPLVGLEELEMSGNH-----FPEIRPGS 237

Query: 256 -ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSL 314
              LSSL  L + ++ +   I+   FD L++L EL++  N + ++     +  LR L  L
Sbjct: 238 FHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLP-HDLFTPLRYLVEL 295

Query: 315 DLSG 318
            L  
Sbjct: 296 HLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  112 bits (281), Expect = 4e-26
 Identities = 68/234 (29%), Positives = 97/234 (41%), Gaps = 36/234 (15%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           + A  F     LE L L  N+I            + L +L  L+L  N      L+ +  
Sbjct: 90  IQADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLNTLELFDNW-----LTVIPS 140

Query: 134 -----LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGG-NKIDKFMVS--KGLSKLK 185
                LS LR L+L +N +E SI     + +  L  LD+G   K++       +GL  LK
Sbjct: 141 GAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199

Query: 186 SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 245
            L L     K   D+        LE L+MSGN    +    G      LS LKKL +  +
Sbjct: 200 YLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPEI--RPGS--FHGLSSLKKLWVMNS 252

Query: 246 LCNNSILSSVAR-----LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
                 +S + R     L+SL  L+L+HN L  S+    F  L  L EL ++ N
Sbjct: 253 Q-----VSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  111 bits (280), Expect = 5e-26
 Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 12/257 (4%)

Query: 641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 700
           +   +  +       +P     I  +  Y N+  N +      +F ++  L+ L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 701 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLS 759
           +  +I         +L  L L +N L   I S  F  L  LR L L  N        + +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 760 KCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 818
           +  SL  L L        I       L  L+++ +   +++  +P     L  L+ L++S
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMS 226

Query: 819 DNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 877
            N+     P  F+ L S+K++ +  + +   ++   F   +SLV L+L++N L+    D 
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDL 285

Query: 878 IDGLSQLSHLNLAHNNL 894
              L  L  L+L HN  
Sbjct: 286 FTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  111 bits (280), Expect = 7e-26
 Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 13/242 (5%)

Query: 691 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 749
              +  +   L+ E+P  +     N  +L+L  N+++  I +  F  L +L  L L  N 
Sbjct: 56  FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 750 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCR 808
                  + +  +SL  L L +N L+         L  L+ + +  N +E  IP   F R
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNR 169

Query: 809 LDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866
           + SL  LD+ +      +    F  L ++K ++L    +              L  L++S
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMS 226

Query: 867 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 926
            N+     P    GLS L  L + ++ +          L  L  L+L+ NNL  L    F
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286

Query: 927 DN 928
             
Sbjct: 287 TP 288

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (278), Expect = 1e-25
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 29/246 (11%)

Query: 112 NLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNK 171
           N + L+L  N        +   L  L  L L  N +   I+V   + L  L  L++  N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 172 I-----DKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSG-NEIDNLVVP 225
           +       F   + LSKL+ L L     + +     F+   +L  LD+    +++ +   
Sbjct: 135 LTVIPSGAF---EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI--S 188

Query: 226 QGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSN 285
           +G      L  LK L+L     N   + ++  L  L  L +S N     I    F  LS+
Sbjct: 189 EGA--FEGLFNLKYLNLGMC--NIKDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSS 243

Query: 286 LEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL----LQSMGSFPSLNTLH 341
           L++L + ++++  +E    + GL  L  L+L+       N L             L  LH
Sbjct: 244 LKKLWVMNSQVSLIE-RNAFDGLASLVELNLA------HNNLSSLPHDLFTPLRYLVELH 296

Query: 342 LESNNF 347
           L  N +
Sbjct: 297 LHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 93.7 bits (233), Expect = 4e-20
 Identities = 64/287 (22%), Positives = 106/287 (36%), Gaps = 53/287 (18%)

Query: 246 LCNNSILSSV-ARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSR 303
           +C    LS V   + S+   L+L  N +Q  I A  F  L +LE L +  N I  +EV  
Sbjct: 60  VCTRRGLSEVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEV-- 116

Query: 304 GYRGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTATLTTTQE--LH 358
                                       G+F    SLNTL L  N     LT        
Sbjct: 117 ----------------------------GAFNGLASLNTLELFDNW----LTVIPSGAFE 144

Query: 359 NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 418
             + L  L L ++ +  S+     +  PSL  L +   +    +S   F    +L++L++
Sbjct: 145 YLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Query: 419 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 478
               I    +        +  L+ L +SG+        I       L+ L++L++ N+ +
Sbjct: 204 GMCNIKDMPNL-----TPLVGLEELEMSGNHF----PEIRPGSFHGLSSLKKLWVMNSQV 254

Query: 479 RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
                       SL  L+++ N L+ S+       L  + EL L +N
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 93.3 bits (232), Expect = 7e-20
 Identities = 58/288 (20%), Positives = 101/288 (35%), Gaps = 64/288 (22%)

Query: 811  SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 869
            + + L++ +NNI       F  L  ++ + L +N +  Q++ G F   +SL TL+L  N+
Sbjct: 76   NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 870  LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN-LHGLIPSCFDN 928
            L        + LS+L  L L +N +E        R+  L  LDL +   L  +    F+ 
Sbjct: 135  LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 929  TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 988
                                                                 L  L  L
Sbjct: 195  -----------------------------------------------------LFNLKYL 201

Query: 989  DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 1048
            +L    +   +P  +  L  ++ L +S N+     P +F  L  ++ L +  +++S    
Sbjct: 202  NLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 1049 RQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 1093
                 L +L    +A+NNLS  +P     F             NP+ C
Sbjct: 260  NAFDGLASLVELNLAHNNLS-SLPHDL--FTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.9 bits (218), Expect = 4e-18
 Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 23/180 (12%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA 132
            + +  F    +L  L L  N I            +R+ +L  LDL         L  ++
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSY----AFNRVPSLMRLDLG----ELKKLEYIS 188

Query: 133 R-----LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLK 185
                 L +L+ L L    ++   D+  L  L  LEEL++ GN   +       GLS LK
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 186 SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 245
            L +  +      +   FD   +L  L+++ N + +L  P  L   + L  L +L L  N
Sbjct: 246 KLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSL--PHDL--FTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.3 bits (201), Expect = 5e-16
 Identities = 67/252 (26%), Positives = 97/252 (38%), Gaps = 44/252 (17%)

Query: 604 IGEFPNWLLENNTKLEFLYLVNDSL----AGPFR-LPIHSHKRLRFLDVSNNNFQGHIPV 658
           I         +   LE L L  +S+     G F  L       L  L++ +N     IP 
Sbjct: 87  IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-----SLNTLELFDNWLT-VIPS 140

Query: 659 EIGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVNL 716
              + L  L    +  N +  SIPS +F  V  L  LDL    KL   I +       NL
Sbjct: 141 GAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNL 198

Query: 717 EFLSLSNNSLKG-HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS 775
           ++L+L   ++K     +    L  L  L + GNHF    P S    SSLK L++ N+ +S
Sbjct: 199 KYLNLGMCNIKDMPNLTP---LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 776 GKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-S 834
             I R                         F  L SL  L+++ NN+S      F PL  
Sbjct: 256 -LIERNA-----------------------FDGLASLVELNLAHNNLSSLPHDLFTPLRY 291

Query: 835 IKQVHLSKNMLH 846
           + ++HL  N  +
Sbjct: 292 LVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.9 bits (187), Expect = 3e-14
 Identities = 45/217 (20%), Positives = 68/217 (31%), Gaps = 42/217 (19%)

Query: 858  SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 917
            S+   L+L  N +     D    L  L  L L  N++          L  L  L+L DN 
Sbjct: 75   SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 918  LHGLIPSCFDN----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 972
            L  +    F+       L    N   S P   F                           
Sbjct: 135  LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR------------------------- 169

Query: 973  IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLR 1031
                     +  L  LDL   K + +I       L  ++ LNL   N+   +P   + L 
Sbjct: 170  ---------VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLV 218

Query: 1032 HIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068
             +E L++S N      P     L++L    V  + +S
Sbjct: 219  GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 5e-13
 Identities = 49/277 (17%), Positives = 90/277 (32%), Gaps = 51/277 (18%)

Query: 383 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSL 440
            I  + + L++    +  + +   F H   LE L +    I      +F       + SL
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAF-----NGLASL 125

Query: 441 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS-F 499
             L L  + L    + I       L+ L+EL++ NN +     +      SL  LD+   
Sbjct: 126 NTLELFDNWL----TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 500 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINES 559
            +L   IS      L +++ L L   + +    +  L     L+  +   N    EI   
Sbjct: 182 KKLE-YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFP-EI-RP 235

Query: 560 HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 619
            S      LK L + ++                           +        +    L 
Sbjct: 236 GSFHGLSSLKKLWVMNS--------------------------QVSLIERNAFDGLASLV 269

Query: 620 FLYLVNDSLAGPFRLP---IHSHKRLRFLDVSNNNFQ 653
            L L +++L+    LP       + L  L + +N + 
Sbjct: 270 ELNLAHNNLS---SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 36/213 (16%), Positives = 64/213 (30%), Gaps = 59/213 (27%)

Query: 858  SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 917
            +    +  +   L+  +P  I   S   +LNL  NN++         L+ L++L L  N+
Sbjct: 54   NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 918  LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977
            +  +    F+                                                  
Sbjct: 111  IRQIEVGAFNG------------------------------------------------- 121

Query: 978  QGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESL 1036
                L+ L  L+L  N L   IP      L++++ L L +N +       F+ +  +  L
Sbjct: 122  ----LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176

Query: 1037 DLS-YNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068
            DL    KL          L  L    +   N+ 
Sbjct: 177  DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 5e-04
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 72  WYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSL 131
             +    F     L+ L +  + ++    N        L +L  L+L+ N  ++      
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERN----AFDGLASLVELNLAHNNLSSLPHDLF 286

Query: 132 ARLSSLRSLYLSDN 145
             L  L  L+L  N
Sbjct: 287 TPLRYLVELHLHHN 300

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  105 bits (265), Expect = 1e-24
 Identities = 52/281 (18%), Positives = 110/281 (39%), Gaps = 23/281 (8%)

Query: 642 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNK 700
           ++ LD+SNN    +I         +L    ++ N ++ +I   SF ++  L+ LDLS N 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 701 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIP-QSL 758
           L+  +         +L FL+L  N  K    + +FS L  L+ L +       +I  +  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 759 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 818
           +  + L+ L ++ ++L    P+ L +++ + H+++        + +      S++ L++ 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 819 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 878
           D ++     S                        +     +   + ++   L   +   +
Sbjct: 231 DTDLDTFHFSELSTGET----------------NSLIKKFTFRNVKITDESLF-QVMKLL 273

Query: 879 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 919
           + +S L  L  + N L+        RL  LQ + L  N   
Sbjct: 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (261), Expect = 3e-24
 Identities = 63/298 (21%), Positives = 106/298 (35%), Gaps = 38/298 (12%)

Query: 754  IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSL 812
            IP  L+   ++K L L+NN ++      L     LQ +V+  N +   I  + F  L SL
Sbjct: 46   IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSL 102

Query: 813  QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 871
            + LD+S N +S    S F PL S+  ++L  N      +   F + + L  L +      
Sbjct: 103  EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 872  GSIPD-WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 930
              I      GL+ L  L +  ++L+   P  L  +  +  L L       L+    D T+
Sbjct: 163  TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 931  LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL-----L 985
                                      SVE   L   +  T + +    G   SL      
Sbjct: 223  --------------------------SVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 986  AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043
              + ++   L   +   +  ++ +  L  S N L       F  L  ++ + L  N  
Sbjct: 257  RNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (261), Expect = 5e-24
 Identities = 72/313 (23%), Positives = 114/313 (36%), Gaps = 52/313 (16%)

Query: 224 VPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL 283
           +P GL        +K LDL  N       S + R  +L +L L+ N +  +I+   F SL
Sbjct: 46  IPSGL-----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSL 99

Query: 284 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL--LQSMGSFPSLNTLH 341
            +LE LD++ N + N+  S  ++ L  L  L+L G      N    L     F  L  L 
Sbjct: 100 GSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLG------NPYKTLGETSLFSHLTKLQ 152

Query: 342 LESNNFTATLTTTQE--LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVN 399
           +       T T  Q       T LE L +D S L                          
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ------------------------- 187

Query: 400 GVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILD 459
                +     +++ HL +   +       L+I  +   S++ L L  + L T     L 
Sbjct: 188 -SYEPKSLKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 460 QG----LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 515
            G    L      + + I +  L   +   L   + L  L+ S NQL  S+       LT
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT 301

Query: 516 SIEELRLSNNHFR 528
           S++++ L  N + 
Sbjct: 302 SLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (256), Expect = 2e-23
 Identities = 61/281 (21%), Positives = 106/281 (37%), Gaps = 37/281 (13%)

Query: 85  LESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSD 144
           ++SLDLS N I   + ++    L R  NL+ L L+ N  N     S + L SL  L LS 
Sbjct: 54  VKSLDLSNNRITYISNSD----LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 145 NRLEGSIDVKELDSLRDLEELDIGGNKID---KFMVSKGLSKLKSLGLSGTGFKGTFDVR 201
           N L  ++       L  L  L++ GN      +  +   L+KL+ L +           +
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA--RLS 259
           +F     LE L++  +++ +         L  +  +  L L      + +L  +     S
Sbjct: 169 DFAGLTFLEELEIDASDLQSY--EPKS--LKSIQNVSHLILHMK--QHILLLEIFVDVTS 222

Query: 260 SLTSLHLSHNILQG----SIDAKEFDSLSN---LEELDINDNEIDNVEVSRGYRGLRKLK 312
           S+  L L    L       +   E +SL        + I D  +   +V +    +  L 
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL--FQVMKLLNQISGLL 280

Query: 313 SLDLSGVGIRDGNKLLQSMG-----SFPSLNTLHLESNNFT 348
            L+         N+ L+S+         SL  + L +N + 
Sbjct: 281 ELEF------SRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.9 bits (231), Expect = 3e-20
 Identities = 60/292 (20%), Positives = 112/292 (38%), Gaps = 45/292 (15%)

Query: 135 SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF 194
            +++SL LS+NR+   I   +L    +L+ L +  N I+                     
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN--------------------- 89

Query: 195 KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN-LCNNSILS 253
             T +   F S  +LE LD+S N + NL           LS L  L+L GN        S
Sbjct: 90  --TIEEDSFSSLGSLEHLDLSYNYLSNL--SSSW--FKPLSSLTFLNLLGNPYKTLGETS 143

Query: 254 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKS 313
             + L+ L  L + +      I  K+F  L+ LEEL+I+ +++ + E  +  + ++ +  
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSH 202

Query: 314 LDLSG-------VGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYL 366
           L L             D    ++ +     L    L++ +F+    +T E ++       
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECL----ELRDTDLDTFHFSE--LSTGETNSLIKKFTF 256

Query: 367 T-LDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 417
             +  +   +  +  + +    L  L  S  ++  V  G  F    SL+ + 
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI-FDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.1 bits (229), Expect = 6e-20
 Identities = 55/305 (18%), Positives = 105/305 (34%), Gaps = 54/305 (17%)

Query: 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSS 260
              ++ LD+S N I  +        L R   L+ L L  N      ++++     + L S
Sbjct: 51  TEAVKSLDLSNNRITYI--SNSD--LQRCVNLQALVLTSNG-----INTIEEDSFSSLGS 101

Query: 261 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 320
           L  L LS+N L  ++ +  F  LS+L  L++  N    +  +  +  L KL+ L +    
Sbjct: 102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN-- 158

Query: 321 IRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI 375
                     +    F     L  L +++++  +    +  L +  N+ +L L       
Sbjct: 159 ----MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS--LKSIQNVSHLILHMKQHI- 211

Query: 376 SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE 435
                                    +L         S+E L++R   +          GE
Sbjct: 212 -------------------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 436 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 495
           +   +K  +     +   S   + + L  ++ L EL    N L+          TSL+ +
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306

Query: 496 DVSFN 500
            +  N
Sbjct: 307 WLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.9 bits (218), Expect = 1e-18
 Identities = 41/230 (17%), Positives = 91/230 (39%), Gaps = 42/230 (18%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSL-- 131
           L++S F P   L  L+L  N      E      L++L  L++        N +  + +  
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG-------NMDTFTKIQR 167

Query: 132 ---ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLG 188
              A L+ L  L +  + L+ S + K L S++++  L +   +    ++ +         
Sbjct: 168 KDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI--LLLEIF------- 217

Query: 189 LSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNL---VVPQGL-ERLSRLSKLKKLDLRG 244
                          D  +++E L++   ++D      +  G    L +    + + +  
Sbjct: 218 --------------VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 245 NLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
                 ++  + ++S L  L  S N L+ S+    FD L++L+++ ++ N
Sbjct: 264 ESL-FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.5 bits (204), Expect = 8e-17
 Identities = 57/316 (18%), Positives = 105/316 (33%), Gaps = 75/316 (23%)

Query: 490 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 549
            +++ LD+S N++T  IS+S L    +++ L L++N      ++E          F    
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEE-------DSFS--- 97

Query: 550 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 609
                      SL     L+ L LS N                       ++  +    +
Sbjct: 98  -----------SLG---SLEHLDLSYN-----------------------YLSNL---SS 117

Query: 610 WLLENNTKLEFLYLVNDSL-----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL 664
              +  + L FL L+ +          F        +L+ L V N +    I  +    L
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFS----HLTKLQILRVGNMDTFTKIQRKDFAGL 173

Query: 665 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 724
             L    I  + L    P S  ++  +  L L   +    + +       ++E L L + 
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT 232

Query: 725 SLKGHIFSRIFS--------LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 776
            L    FS + +            R + +       ++ + L++ S L  L  + N L  
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

Query: 777 KIPRW-LGNLKGLQHI 791
            +P      L  LQ I
Sbjct: 292 -VPDGIFDRLTSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 41/255 (16%), Positives = 75/255 (29%), Gaps = 49/255 (19%)

Query: 858  SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL-CRLNQLQLLDLSDN 916
             ++ +LDLS N +       +     L  L L  N +   +       L  L+ LDLS N
Sbjct: 52   EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 917  NLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 972
             L  L  S F      T L+   N                            + E     
Sbjct: 111  YLSNLSSSWFKPLSSLTFLNLLGN------------------------PYKTLGE----- 141

Query: 973  IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLR 1031
                     L+ L  L +        I  +    LT ++ L +  ++L    P +  +++
Sbjct: 142  ---TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 1032 HIESLDLSYNKLSGKIPR---------QLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFN 1082
            ++  L L   +    +           + ++L    +    ++ LS        +  TF 
Sbjct: 199  NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 1083 KSSYDGNPFLCGLPL 1097
                        + L
Sbjct: 258  NVKITDESLFQVMKL 272

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 13/153 (8%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA 132
            +    F     LE L++  +++           L  + N+  L L        +   + 
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPK----SLKSIQNVSHLILHMKQHILLLEIFVD 219

Query: 133 RLSSLRSLYLSDNRLEG-------SIDVKELDSLRDLEELDIGGNKIDKFM-VSKGLSKL 184
             SS+  L L D  L+        + +   L        + I    + + M +   +S L
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279

Query: 185 KSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGN 217
             L  S    K +     FD   +L+ + +  N
Sbjct: 280 LELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 42/216 (19%), Positives = 66/216 (30%), Gaps = 62/216 (28%)

Query: 857  CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 916
            C        S   LN SIP  +     +  L+L++N +       L R   LQ L L+ N
Sbjct: 30   CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 917  NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 976
             ++ +    F +                                                
Sbjct: 87   GINTIEEDSFSS------------------------------------------------ 98

Query: 977  YQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIP--LTFSNLRHI 1033
                 L  L  LDLS N L  ++       L+ +  LNL  N    T+     FS+L  +
Sbjct: 99   -----LGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKL 151

Query: 1034 ESLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLS 1068
            + L +       KI R+    L  L    +  ++L 
Sbjct: 152  QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  107 bits (269), Expect = 2e-24
 Identities = 85/446 (19%), Positives = 161/446 (36%), Gaps = 56/446 (12%)

Query: 160 RDLEELDIGGNKIDKFMVS---KGLSKLKSLGLSGTGFKGTFDVREFDSF----NNLEVL 212
            D++ LDI   ++     +     L + + + L   G       ++  S       L  L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAEL 61

Query: 213 DMSGNEIDNLVVPQGLERLSRLS-KLKKLDLRGNL----CNNSILSSVARLSSLTSLHLS 267
           ++  NE+ ++ V   L+ L   S K++KL L+           + S++  L +L  LHLS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 268 HNILQGS----IDAKEFDSLSNLEELDINDNEIDNV---EVSRGYRGLRKLKSLDLSGVG 320
            N+L  +    +     D    LE+L +    +       ++   R     K L +S   
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 321 IRD-GNKLLQSMGSFP--SLNTLHLESNNFTATLTTT--QELHNFTNLEYLTLDDSSLH- 374
           I + G ++L          L  L LES   T+         + +  +L  L L  + L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 375 ---ISLLQSIGSIFPSLKNLSMSGCEV--NGVLS-GQGFPHFKSLEHLDMRFARIALNTS 428
                L   +      L+ L +  C +   G     +     +SL+ L +    +     
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL--GDE 299

Query: 429 FLQIIGESM----PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW 484
             +++ E++      L+ L +   +            L     L EL I NN L  +   
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 485 CLA-----NTTSLRILDVSFNQLT----GSISSSPLVHLTSIEELRLSNNHF------RI 529
            L        + LR+L ++   ++     S++++ L+   S+ EL LSNN        ++
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNNCLGDAGILQL 418

Query: 530 PVSLEPLFNHSKLKIFDAKNNEINGE 555
             S+        L+     +   + E
Sbjct: 419 VESVR--QPGCLLEQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  107 bits (269), Expect = 2e-24
 Identities = 91/490 (18%), Positives = 160/490 (32%), Gaps = 98/490 (20%)

Query: 83  QQLESLDLSWNNIAGCAENEGLEGLSR-LNNLKMLDLSGNAFNNNVLSSLARL----SSL 137
             ++SLD+    +     +     L   L   +++ L            ++       +L
Sbjct: 3   LDIQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 138 RSLYLSDNRLEGSIDVKEL-DSLRD----LEELDIGGNKIDKFMVSKGLSKLKSLGLSGT 192
             L L  N L G + V  +   L+     +++L +    +       G   L S      
Sbjct: 59  AELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLT----GAGCGVLSST----- 108

Query: 193 GFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL-----SKLKKLDLRGNL- 246
                       +   L+ L +S N + +     GL+ L         +L+KL L     
Sbjct: 109 ----------LRTLPTLQELHLSDNLLGD----AGLQLLCEGLLDPQCRLEKLQLEYCSL 154

Query: 247 ---CNNSILSSVARLSSLTSLHLSHNILQGSIDAKEF-----DSLSNLEELDINDNEIDN 298
                  + S +        L +S+N +      +       DS   LE L +    + +
Sbjct: 155 SAASCEPLASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213

Query: 299 ---VEVSRGYRGLRKLKSLDLSGVGIRD-GNKLLQSMGSFP--SLNTLHLESNNFTATLT 352
               ++         L+ L L    + D G   L      P   L TL +     TA   
Sbjct: 214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC 273

Query: 353 T--TQELHNFTNLEYLTLDDSSLH----ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG 406
               + L    +L+ L+L  + L       L +++      L++L +  C      +   
Sbjct: 274 GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS----FTAAC 329

Query: 407 FPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC-PL 465
             HF S            L              L  L +S + L     R L QGL  P 
Sbjct: 330 CSHFSS-----------VL---------AQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369

Query: 466 AHLQELYIDNNDLR----GSLPWCLANTTSLRILDVSFNQLTGS----ISSSPLVHLTSI 517
           + L+ L++ + D+      SL   L    SLR LD+S N L  +    +  S       +
Sbjct: 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 429

Query: 518 EELRLSNNHF 527
           E+L L + ++
Sbjct: 430 EQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  103 bits (259), Expect = 3e-23
 Identities = 94/473 (19%), Positives = 163/473 (34%), Gaps = 86/473 (18%)

Query: 76  ASLFTPFQQLESLDLSWNNI--AGCAENEGL-EGLSRLNNLKMLDLSGNAFNNNVLSSLA 132
           A L    QQ + + L    +  A C   + +   L     L  L+L  N   +  +  + 
Sbjct: 21  AELLPLLQQCQVVRLDDCGLTEARC---KDISSALRVNPALAELNLRSNELGDVGVHCVL 77

Query: 133 RL-----SSLRSLYLSDNRL--EGSIDVKE-LDSLRDLEELDIGGNKIDKF-------MV 177
           +        ++ L L +  L   G   +   L +L  L+EL +  N +           +
Sbjct: 78  QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137

Query: 178 SKGLSKLKSLGLSGTGFKGTFDVREF----DSFNNLEVLDMSGNEIDNLVVPQGLERLSR 233
                +L+ L L                   +  + + L +S N+I+      G+  L +
Sbjct: 138 LDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKELTVSNNDINE----AGVRVLCQ 192

Query: 234 L-----SKLKKLDLRGNLCNN----SILSSVARLSSLTSLHLSHNILQGSIDAKEF---- 280
                  +L+ L L      +     +   VA  +SL  L L  N L G +   E     
Sbjct: 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL-GDVGMAELCPGL 251

Query: 281 -DSLSNLEELDINDNEIDN---VEVSRGYRGLRKLKSLDLSGVGIRD-GNKLLQSMGSFP 335
               S L  L I +  I      ++ R  R    LK L L+G  + D G +LL      P
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311

Query: 336 --SLNTLHLESNNFTATLTT--TQELHNFTNLEYLTLDDSSLH----ISLLQSIGSIFPS 387
              L +L ++S +FTA   +  +  L     L  L + ++ L       L Q +G     
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 388 LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG 447
           L+ L ++ C+    +S        +            L  +          SL+ L LS 
Sbjct: 372 LRVLWLADCD----VSDSSCSSLAA-----------TLLAN---------HSLRELDLSN 407

Query: 448 STLGTNSSRILDQGL-CPLAHLQELYIDNNDLR----GSLPWCLANTTSLRIL 495
           + LG      L + +  P   L++L + +          L     +  SLR++
Sbjct: 408 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 97.3 bits (243), Expect = 3e-21
 Identities = 74/413 (17%), Positives = 140/413 (33%), Gaps = 52/413 (12%)

Query: 208 NLEVLDMSGNEIDNLVVPQGLERLSR-LSKLKKLDLRGN-LCNNS---ILSSVARLSSLT 262
           +++ LD+   E+           L   L + + + L    L       I S++    +L 
Sbjct: 4   DIQSLDIQCEELS----DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 263 SLHLSHNILQGSIDAKEF-----DSLSNLEELDINDNEIDNV---EVSRGYRGLRKLKSL 314
            L+L  N L G +               +++L + +  +       +S   R L  L+ L
Sbjct: 60  ELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 315 DLSGVGIRD-GNKLLQSMGSFP--SLNTLHLESNNFTATLTTT--QELHNFTNLEYLTLD 369
            LS   + D G +LL      P   L  L LE  + +A         L    + + LT+ 
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 370 DSSLHISLLQSIGSIFP----SLKNLSMSGCEVN--GVLS-GQGFPHFKSLEHLDMRFAR 422
           ++ ++ + ++ +          L+ L +  C V                SL  L +   +
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 423 IALNTSFLQIIGESM----PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 478
           +      +  +   +      L+ L +    +       L + L     L+EL +  N+L
Sbjct: 239 L--GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

Query: 479 R--GSLPWCLA---NTTSLRILDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHFR- 528
              G+   C         L  L V     T       SS  L     + EL++SNN    
Sbjct: 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISNNRLED 355

Query: 529 ---IPVSLEPLFNHSKLKIFDAKNNEINGEINE--SHSLTPKFQLKSLSLSSN 576
                +        S L++    + +++       + +L     L+ L LS+N
Sbjct: 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 91.6 bits (228), Expect = 2e-19
 Identities = 76/375 (20%), Positives = 127/375 (33%), Gaps = 57/375 (15%)

Query: 73  YLNASLFTPFQQLESLDLSWNNI--AGCAENEGL-EGLSRLNNLKMLDLSGNAFNNNVLS 129
            +   L TP  +++ L L    +  AGC     L   L  L  L+ L LS N   +  L 
Sbjct: 75  CVLQGLQTPSCKIQKLSLQNCCLTGAGC---GVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131

Query: 130 SLARL-----SSLRSLYLSDNRL--EGSIDV-KELDSLRDLEELDIGGNKIDKFMV---S 178
            L          L  L L    L       +   L +  D +EL +  N I++  V    
Sbjct: 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191

Query: 179 KGLS----KLKSLGLSGTGF--KGTFDVREFDSFN-NLEVLDMSGNEIDNLVVPQGLERL 231
           +GL     +L++L L   G       D+    +   +L  L +  N++ +     G+  L
Sbjct: 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD----VGMAEL 247

Query: 232 SR-----LSKLKKLDLRGNL----CNNSILSSVARLSSLTSLHLSHNILQGS----IDAK 278
                   S+L+ L +            +   +    SL  L L+ N L       +   
Sbjct: 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307

Query: 279 EFDSLSNLEELDINDNEIDN---VEVSRGYRGLRKLKSLDLSGVGIRD-GNKLLQSMGSF 334
             +    LE L +             S      R L  L +S   + D G + L      
Sbjct: 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367

Query: 335 P--SLNTLHLESNNFT----ATLTTTQELHNFTNLEYLTLDDSSLHIS----LLQSIGSI 384
           P   L  L L   + +    ++L  T  L    +L  L L ++ L  +    L++S+   
Sbjct: 368 PGSVLRVLWLADCDVSDSSCSSLAAT--LLANHSLRELDLSNNCLGDAGILQLVESVRQP 425

Query: 385 FPSLKNLSMSGCEVN 399
              L+ L +     +
Sbjct: 426 GCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.2 bits (214), Expect = 1e-17
 Identities = 74/464 (15%), Positives = 158/464 (34%), Gaps = 75/464 (16%)

Query: 361 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVN--GVLS-GQGFPHFKSLEHLD 417
            +++ L +    L  +    +  +    + + +  C +                +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 418 MRFARIALNTSFLQIIGESM----PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 473
           +R   +      +  + + +      ++ LSL    L      +L   L  L  LQEL++
Sbjct: 63  LRSNEL--GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 474 DNNDLRGSLPWCLA-----NTTSLRILDVSFNQLT----GSISSSPLVHLTSIEELRLSN 524
            +N L  +    L          L  L + +  L+      ++S  L      +EL +SN
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSN 179

Query: 525 NHFRIPVSLEPL-----FNHSKLKIFDAKNNEINGEINE--SHSLTPKFQLKSLSLSSNY 577
           N       +  L      +  +L+    ++  +  +        +  K  L+ L+L SN 
Sbjct: 180 NDI-NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 578 -GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL----AGPF 632
            GD                     +  +      LL  +++L  L++    +     G  
Sbjct: 239 LGD-------------------VGMAELCPG---LLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 633 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL----PSLVYFNISMNALDGSIPSSFGNV 688
              + + + L+ L ++ N         + + L      L    +   +   +  S F +V
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 689 I----FLQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLK----GHIFSRIFS 736
           +    FL  L +SNN+L       +   L      L  L L++  +       + + + +
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 737 LRNLRWLLLEGNHF----VGEIPQSLSKC-SSLKGLYLNNNNLS 775
             +LR L L  N      + ++ +S+ +    L+ L L +   S
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 84.2 bits (209), Expect = 6e-17
 Identities = 78/356 (21%), Positives = 125/356 (35%), Gaps = 62/356 (17%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGL-EGLSRLNNLKMLDLSGNAFNNNVLSSL 131
            L   L  P  +LE L L + ++   A  E L   L    + K L +S N  N   +  L
Sbjct: 132 LLCEGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL 190

Query: 132 ARL-----SSLRSLYLSDNRL--EGSIDVKE-LDSLRDLEELDIGGNKIDKFMVSKGLSK 183
            +        L +L L    +  +   D+   + S   L EL +G NK+       G+++
Sbjct: 191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG----DVGMAE 246

Query: 184 LKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL----SKLKK 239
           L    L                 + L  L +    I      +G   L R+      LK+
Sbjct: 247 LCPGLL--------------HPSSRLRTLWIWECGIT----AKGCGDLCRVLRAKESLKE 288

Query: 240 LDLRGNLCNNSILSSVARL-----SSLTSLHLSHNILQGSIDAKEFDSL----SNLEELD 290
           L L GN   +     +          L SL +       +     F S+      L EL 
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF-TAACCSHFSSVLAQNRFLLELQ 347

Query: 291 INDNEIDNVEVSRGYRGLR----KLKSLDLSGVGIRD--GNKLLQSMGSFPSLNTLHLES 344
           I++N +++  V    +GL      L+ L L+   + D   + L  ++ +  SL  L L +
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407

Query: 345 NNFTATLTTTQEL-----HNFTNLEYLTLDDSSLH---ISLLQSIGSIFPSLKNLS 392
           N          +L          LE L L D          LQ++    PSL+ +S
Sbjct: 408 NCLGD--AGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 83.1 bits (206), Expect = 1e-16
 Identities = 90/528 (17%), Positives = 158/528 (29%), Gaps = 140/528 (26%)

Query: 439 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR----GSLPWCLANTTSLRI 494
            ++ L +    L       L   L      Q + +D+  L       +   L    +L  
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQ---QCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 495 LDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 550
           L++  N+L       +          I++L L N           L              
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT-GAGCGVL-------------- 105

Query: 551 EINGEINESHSLTPKFQLKSLSLSSNY-GDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 609
                   S +L     L+ L LS N  GD+                    ++++ E   
Sbjct: 106 --------SSTLRTLPTLQELHLSDNLLGDAG-------------------LQLLCEG-- 136

Query: 610 WLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP 665
            LL+   +LE L L   SL      P    + +    + L VSNN+        +   L 
Sbjct: 137 -LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 195

Query: 666 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA---MCCVNLEFLSLS 722
                                +   L+ L L +  +T +    L        +L  L+L 
Sbjct: 196 D--------------------SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235

Query: 723 NNSLKGHIFSRI-----FSLRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYLNNNN 773
           +N L     + +          LR L +          G++ + L    SLK L L  N 
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

Query: 774 LSGKIPRWLGNLKGLQHI--VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY 831
           L           +G + +   + +                L+ L +   + +    +C  
Sbjct: 296 LGD---------EGARLLCETLLEPGC------------QLESLWVKSCSFT---AACCS 331

Query: 832 PLS--------IKQVHLSKNMLHG----QLKEGTFFNCSSLVTLDLSYNYLN----GSIP 875
             S        + ++ +S N L      +L +G     S L  L L+   ++     S+ 
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391

Query: 876 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRL-----NQLQLLDLSDNNL 918
             +     L  L+L++N L     +QL          L+ L L D   
Sbjct: 392 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.1 bits (193), Expect = 5e-15
 Identities = 76/460 (16%), Positives = 137/460 (29%), Gaps = 110/460 (23%)

Query: 642  LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALD----GSIPSSFGNVIFLQFLDLS 697
            ++ LD+           E+  +L       +    L       I S+      L  L+L 
Sbjct: 5    IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 698  NNKLTGE----IPDHLAMCCVNLEFLSLSNNSLK----GHIFSRIFSLRNLRWLLLEGNH 749
            +N+L       +   L      ++ LSL N  L     G + S + +L  L+ L L  N 
Sbjct: 65   SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 750  FVGEIPQSLSK-----CSSLKGLYLNNNNLSGKIPRWLGN-LKGLQHIVMPKNHLEGPIP 803
                  Q L +        L+ L L   +LS      L + L+                 
Sbjct: 125  LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD------------- 171

Query: 804  VEFCRLDSLQILDISDNNISGS--------LPSCFYPLSIKQVHLSKNMLHGQ----LKE 851
                     + L +S+N+I+ +        L     P  ++ + L    +       L  
Sbjct: 172  --------FKELTVSNNDINEAGVRVLCQGLKDS--PCQLEALKLESCGVTSDNCRDLCG 221

Query: 852  GTFFNCSSLVTLDLSYNYLNGS-----IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL- 905
                + +SL  L L  N L         P  +   S+L  L +    +  +    LCR+ 
Sbjct: 222  I-VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 906  ---NQLQLLDLSDNNLH---------GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG 953
                 L+ L L+ N L           L+       +L     +                
Sbjct: 281  RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS---------------- 324

Query: 954  PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG-----NLTR 1008
                              + +          L  L +S N+L      ++        + 
Sbjct: 325  -----------FTAACCSHFSSVLA--QNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 1009 IQTLNLSHNNLT----GTIPLTFSNLRHIESLDLSYNKLS 1044
            ++ L L+  +++     ++  T      +  LDLS N L 
Sbjct: 372  LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.0 bits (159), Expect = 7e-11
 Identities = 59/374 (15%), Positives = 123/374 (32%), Gaps = 67/374 (17%)

Query: 715  NLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYL 769
            +++ L +    L    ++ +   L+  + + L+          +I  +L    +L  L L
Sbjct: 4    DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 770  NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS----GS 825
             +N L            G+  ++     L+ P          +Q L + +  ++    G 
Sbjct: 64   RSNELGDV---------GVHCVL---QGLQTPSC-------KIQKLSLQNCCLTGAGCGV 104

Query: 826  LPSCFYPL-SIKQVHLSKNMLHGQ----LKEGTFFNCSSLVTLDLSYNYLN----GSIPD 876
            L S    L +++++HLS N+L       L EG       L  L L Y  L+      +  
Sbjct: 105  LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 877  WIDGLSQLSHLNLAHNNLEGEVPIQLCRL-----NQLQLLDLSDNNLHG--------LIP 923
             +        L +++N++       LC+       QL+ L L    +          ++ 
Sbjct: 165  VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 924  SCFDNTTLHESYNNNSSPDKPFKT-SFSISGPQGSVEKKILEIFEFTT---KNIAYAYQG 979
            S      L    N     D         +  P   +    +     T     ++    + 
Sbjct: 225  SKASLRELALGSNKLG--DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR- 281

Query: 980  RVLSLLAGLDLSCNKL----VGHIPPQIGN-LTRIQTLNLSHNNLT--GTIPLT--FSNL 1030
                 L  L L+ N+L       +   +     ++++L +   + T       +   +  
Sbjct: 282  -AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 1031 RHIESLDLSYNKLS 1044
            R +  L +S N+L 
Sbjct: 341  RFLLELQISNNRLE 354

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  101 bits (255), Expect = 7e-24
 Identities = 54/215 (25%), Positives = 80/215 (37%), Gaps = 21/215 (9%)

Query: 112 NLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNK 171
             + + L GN  ++   +S     +L  L+L  N L   ID      L  LE+LD+  N 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 172 IDKFMVS---KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL 228
             + +      GL +L +L L   G +       F     L+ L +  N +  L  P   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQAL--PDDT 148

Query: 229 ERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHNILQGSIDAKEFDSL 283
                L  L  L L GN      +SSV       L SL  L L  N +   +    F  L
Sbjct: 149 --FRDLGNLTHLFLHGNR-----ISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDL 200

Query: 284 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
             L  L +  N +  +  +     LR L+ L L+ 
Sbjct: 201 GRLMTLYLFANNLSALP-TEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (251), Expect = 3e-23
 Identities = 51/217 (23%), Positives = 81/217 (37%), Gaps = 22/217 (10%)

Query: 85  LESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSD 144
            + + L  N I+               NL +L L  N       ++   L+ L  L LSD
Sbjct: 34  SQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 145 NRLEGSIDVKELDSLRDLEELDIGGNKIDKF--MVSKGLSKLKSLGLSGTGFKGTFDVRE 202
           N    S+D      L  L  L +    + +    + +GL+ L+ L L     +       
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR----- 257
           F    NL  L + GN I ++  P+       L  L +L L  N      ++ V       
Sbjct: 149 FRDLGNLTHLFLHGNRISSV--PERA--FRGLHSLDRLLLHQNR-----VAHVHPHAFRD 199

Query: 258 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
           L  L +L+L  N L  ++  +    L  L+ L +NDN
Sbjct: 200 LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 99.7 bits (249), Expect = 4e-23
 Identities = 58/233 (24%), Positives = 84/233 (36%), Gaps = 32/233 (13%)

Query: 691 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 749
            Q + L  N+++  +P      C NL  L L +N L   I +  F+ L  L  L L  N 
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 750 FVGEIPQS-LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FC 807
            +  +  +       L  L+L+   L    P     L  LQ++ +  N L+  +P + F 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150

Query: 808 RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 867
            L +L  L +  N IS                         + E  F    SL  L L  
Sbjct: 151 DLGNLTHLFLHGNRIS------------------------SVPERAFRGLHSLDRLLLHQ 186

Query: 868 NYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 919
           N +   +       L +L  L L  NNL       L  L  LQ L L+DN   
Sbjct: 187 NRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.9 bits (247), Expect = 9e-23
 Identities = 54/261 (20%), Positives = 86/261 (32%), Gaps = 36/261 (13%)

Query: 638 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 697
            ++            Q  +P     I  +     +  N +     +SF     L  L L 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 698 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQ 756
           +N L   I          LE L LS+N+    +    F  L  L  L L+      E+  
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP 122

Query: 757 -SLSKCSSLKGLYLNNNNLSGKIP-RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 814
                 ++L+ LYL +N L   +P     +L  L H+ +  N +       F  L SL  
Sbjct: 123 GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 815 LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI 874
           L +  N ++                         +    F +   L+TL L  N L+ ++
Sbjct: 182 LLLHQNRVA------------------------HVHPHAFRDLGRLMTLYLFANNLS-AL 216

Query: 875 PDWI-DGLSQLSHLNLAHNNL 894
           P      L  L +L L  N  
Sbjct: 217 PTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.8 bits (239), Expect = 9e-22
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 29/224 (12%)

Query: 135 SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGT 192
           ++ + ++L  NR+   +      + R+L  L +  N + +   +   GL+ L+ L LS  
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 193 GFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSIL 252
               + D   F     L  L +    +  L    GL     L+ L+ L L+ N      L
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQEL--GPGL--FRGLAALQYLYLQDNA-----L 141

Query: 253 SSV-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG 307
            ++       L +LT L L  N +  S+  + F  L +L+ L ++ N + +V     +R 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRD 199

Query: 308 LRKLKSLDLSGVGIRDGNKL----LQSMGSFPSLNTLHLESNNF 347
           L +L +L L        N L     +++    +L  L L  N +
Sbjct: 200 LGRLMTLYLF------ANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 45/194 (23%), Positives = 70/194 (36%), Gaps = 5/194 (2%)

Query: 738 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 797
              + + L GN        S   C +L  L+L++N L+         L  L+ + +  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 798 LEGPIPVE-FCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTF 854
               +    F  L  L  L +    +   L    F  L +++ ++L  N L   L + TF
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 855 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 914
            +  +L  L L  N ++        GL  L  L L  N +    P     L +L  L L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 915 DNNLHGLIPSCFDN 928
            NNL  L       
Sbjct: 210 ANNLSALPTEALAP 223

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 11/192 (5%)

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
            +P  +   ++ + ++L+ N +S          + L  + +  N L       F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 813 QILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 870
           + LD+SDN    S+    F+ L  +  +HL +  L  +L  G F   ++L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 871 NGSIPD-WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN- 928
             ++PD     L  L+HL L  N +          L+ L  L L  N +  + P  F + 
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 929 ---TTLHESYNN 937
               TL+   NN
Sbjct: 201 GRLMTLYLFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 46/174 (26%), Positives = 64/174 (36%), Gaps = 11/174 (6%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           ++A+ FT    LE LDLS N      +     GL     L  L L               
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG---RLHTLHLDRCGLQELGPGLFRG 127

Query: 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSG 191
           L++L+ LYL DN L+ ++       L +L  L + GN+I        +GL  L  L L  
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 192 TGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 245
                      F     L  L +  N +  L  P     L+ L  L+ L L  N
Sbjct: 187 NRVA-HVHPHAFRDLGRLMTLYLFANNLSAL--PTEA--LAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 57/292 (19%), Positives = 89/292 (30%), Gaps = 65/292 (22%)

Query: 807  CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866
            C  +           +  ++P    P + +++ L  N +   +   +F  C +L  L L 
Sbjct: 8    CYNEPKVTTSCPQQGLQ-AVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLH 64

Query: 867  YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSC 925
             N L         GL+ L  L+L+ N     V       L +L  L L    L  L P  
Sbjct: 65   SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 926  FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 985
            F                                                       L+ L
Sbjct: 125  FRG-----------------------------------------------------LAAL 131

Query: 986  AGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
              L L  N L   +P     +L  +  L L  N ++      F  L  ++ L L  N+++
Sbjct: 132  QYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 1045 GKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 1093
               P    DL  L    +  NNLS  +P      A      Y   + NP++C
Sbjct: 191  HVHPHAFRDLGRLMTLYLFANNLS-ALPT--EALAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 53/290 (18%), Positives = 102/290 (35%), Gaps = 77/290 (26%)

Query: 247 CNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 304
           C    L +V     ++   + L  N +   + A  F +  NL  L ++ N +  ++ +  
Sbjct: 18  CPQQGLQAVPVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARID-AAA 75

Query: 305 YRGLRKLKSLDLSGVGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHN 359
           + GL  L+ LDLS       N  L+S+   +F     L+TLHL+                
Sbjct: 76  FTGLALLEQLDLSD------NAQLRSVDPATFHGLGRLHTLHLDRCGLQE---------- 119

Query: 360 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 419
                                                     L    F    +L++L ++
Sbjct: 120 ------------------------------------------LGPGLFRGLAALQYLYLQ 137

Query: 420 FARI-ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 478
              + AL     +     + +L +L L G+ +    S + ++    L  L  L +  N +
Sbjct: 138 DNALQALPDDTFR----DLGNLTHLFLHGNRI----SSVPERAFRGLHSLDRLLLHQNRV 189

Query: 479 RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 528
               P    +   L  L +  N L+ ++ +  L  L +++ LRL++N + 
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 42/223 (18%), Positives = 76/223 (34%), Gaps = 29/223 (13%)

Query: 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSS 260
               + + + GN I ++  P           L  L L  N+     L+ +       L+ 
Sbjct: 31  PAASQRIFLHGNRISHV--PAAS--FRACRNLTILWLHSNV-----LARIDAAAFTGLAL 81

Query: 261 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 320
           L  L LS N    S+D   F  L  L  L ++   +  +     +RGL  L+ L L    
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQ--- 137

Query: 321 IRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 376
               N L      +F    +L  L L  N  ++            +L+ L L  + +   
Sbjct: 138 ---DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNRVA-H 191

Query: 377 LLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 419
           +          L  L +    ++  L  +     ++L++L + 
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 52/284 (18%), Positives = 89/284 (31%), Gaps = 81/284 (28%)

Query: 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
           A  Q +++  N +            +L IL +  N L   I ++    L  +E+L LS+N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 526 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 585
             ++  S++P         F              H L    +L +L L            
Sbjct: 91  A-QL-RSVDP-------ATF--------------HGLG---RLHTLHLDRC--------- 115

Query: 586 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 645
                       L  +         L      L++LYL                      
Sbjct: 116 -----------GLQEL------GPGLFRGLAALQYLYL---------------------- 136

Query: 646 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 705
              +N  Q  +P +    L +L +  +  N +      +F  +  L  L L  N++   +
Sbjct: 137 --QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HV 192

Query: 706 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGN 748
             H       L  L L  N+L   + +     LR L++L L  N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 45/248 (18%), Positives = 77/248 (31%), Gaps = 48/248 (19%)

Query: 438 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 497
            + + + L G+ +    S +         +L  L++ +N L             L  LD+
Sbjct: 32  AASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 498 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDAKNNEINGE 555
           S N    S+  +    L  +  L L     +    L P LF   + L+    ++N +   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQDNALQ-A 143

Query: 556 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 615
           +    +      L  L L  N                     +S +      P       
Sbjct: 144 L-PDDTFRDLGNLTHLFLHGN--------------------RISSV------PERAFRGL 176

Query: 616 TKLEFLYLVNDSL----AGPFR-LPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 670
             L+ L L  + +       FR L      RL  L +  NN    +P E    L +L Y 
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLG-----RLMTLYLFANNLS-ALPTEALAPLRALQYL 230

Query: 671 NISMNALD 678
            ++ N   
Sbjct: 231 RLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA 132
            L    F     L  L L  N I+   E         L++L  L L  N   +    +  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPER----AFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 133 RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGN 170
            L  L +LYL  N L  ++  + L  LR L+ L +  N
Sbjct: 199 DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 97.3 bits (242), Expect = 5e-22
 Identities = 58/277 (20%), Positives = 92/277 (33%), Gaps = 23/277 (8%)

Query: 84  QLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLS 143
            LE L    +  A   +   +     L  L +      +        +  +S L+ L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 144 DNRLEGSIDVKELD-SLRDLEELDIGGNKIDKF------MVSKGLSKLKSLGLSGTGFKG 196
           +  + G+     L+ +  DL  L++              +       LK L ++      
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-L 162

Query: 197 TFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCN---NSILS 253
            F   +   F  L  LD+S N               +   L+ L LR            +
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 254 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKS 313
             A    L  L LSHN L+ +  A   D  S L  L+++   +   +V +G     KL  
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGL--PAKLSV 278

Query: 314 LDLSGVGIRDGNKL--LQSMGSFPSLNTLHLESNNFT 348
           LDLS       N+L    S    P +  L L+ N F 
Sbjct: 279 LDLS------YNRLDRNPSPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 97.3 bits (242), Expect = 5e-22
 Identities = 66/301 (21%), Positives = 105/301 (34%), Gaps = 43/301 (14%)

Query: 611 LLENNTKLEFLYLVNDSLAGPFRLPIHSHK-RLRFLDVSNNNFQGHIPVEIGDILPSLVY 669
           L      LE+L    D+ A   +         L+ L V        I      +L     
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVL----- 92

Query: 670 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP-DHLAMCCVNLEFLSLSNNSLKG 728
                             +  LQ L L N ++TG  P   L     +L  L+L N S   
Sbjct: 93  -----------------GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 729 HIFS----RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW--- 781
                   + +    L+ L +   H +    + +    +L  L L++N   G+       
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 782 -LGNLKGLQHIVMPKNHLE---GPIPVEFCRLDSLQILDISDNNISGSLP--SCFYPLSI 835
                  LQ + +    +E   G           LQ LD+S N++  +    SC +P  +
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 836 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE 895
             ++LS   L  Q+ +G     + L  LDLSYN L+   P   D L Q+ +L+L  N   
Sbjct: 256 NSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFL 309

Query: 896 G 896
            
Sbjct: 310 D 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.5 bits (214), Expect = 2e-18
 Identities = 52/299 (17%), Positives = 84/299 (28%), Gaps = 35/299 (11%)

Query: 486 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLK 543
                SL  L    +        + ++   S++ L +       RI      +   S L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 544 IFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKM 603
               +N E+ G             L  L+L +      T   +L                
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNV--SWATRDAWL---------------- 140

Query: 604 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE---I 660
             E   WL      L      + + +      +     L  LD+S+N   G   +     
Sbjct: 141 -AELQQWLKPGLKVLSIAQAHSLNFSCEQ---VRVFPALSTLDLSDNPELGERGLISALC 196

Query: 661 GDILPSLVYFNISMN---ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 717
               P+L    +         G   +     + LQ LDLS+N L              L 
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 718 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 776
            L+LS   LK  +   + +   L  L L  N      P    +   +  L L  N    
Sbjct: 257 SLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 1e-15
 Identities = 57/309 (18%), Positives = 96/309 (31%), Gaps = 62/309 (20%)

Query: 736  SLRNLRWLLLEGNHFVGEIP-QSLSKCSSLKGLYLNNNNLSGKIPRW---LGNLKGLQHI 791
              R+L +LL   +          + K  SLK L +    +  +I      +  + GLQ +
Sbjct: 41   GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 792  VMPKNHLEGPIPVEFCRLD--SLQILDISDNNISGSLP-----SCFYPLSIKQVHLSKNM 844
             +    + G  P          L IL++ + + +           +    +K + +++  
Sbjct: 101  TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 845  LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI----DGLSQLSHLNLAHNNLE---GE 897
                          +L TLDLS N   G               L  L L +  +E   G 
Sbjct: 161  S-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 898  VPIQLCRLNQLQLLDLSDNNLHGLIP--SCFDNTTLHE---SYNNNSSPDKPFKTSFSIS 952
                     QLQ LDLS N+L       SC   + L+    S+                 
Sbjct: 220  CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT---------------- 263

Query: 953  GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 1012
                     + ++ +                 L+ LDLS N+L     P    L ++  L
Sbjct: 264  --------GLKQVPKGLPAK------------LSVLDLSYNRLDR--NPSPDELPQVGNL 301

Query: 1013 NLSHNNLTG 1021
            +L  N    
Sbjct: 302  SLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.8 bits (181), Expect = 5e-14
 Identities = 49/294 (16%), Positives = 94/294 (31%), Gaps = 34/294 (11%)

Query: 240 LDLRGNLCNNSILSSVARLSSLTSLHLSHNIL--QGSIDAKEFDSLSNLEELDINDNEI- 296
           L       +    + + +  SL  L +    +  +    A     +S L+EL + + E+ 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 297 DNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQE 356
                         L  L+L  V     +  L  +  +       L      +   + ++
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 357 LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHL 416
           +  F  L  L L D+   +     I ++ P                       F +L+ L
Sbjct: 169 VRVFPALSTLDLSDNPE-LGERGLISALCPL---------------------KFPTLQVL 206

Query: 417 DMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 476
            +R A +   +     +  +   L+ L LS ++L               + L  L +   
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL---RDAAGAPSCDWPSQLNSLNLSFT 263

Query: 477 DLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIP 530
            L+  +P  L     L +LD+S+N+L     +     L  +  L L  N F   
Sbjct: 264 GLK-QVPKGLP--AKLSVLDLSYNRLD---RNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.2 bits (169), Expect = 1e-12
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 10/201 (4%)

Query: 387 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 446
           +++   +    + G L   G    + L   ++        T+   ++  + P L  L+L 
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEV----TGTAPPPLLEATGPDLNILNLR 129

Query: 447 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 506
             +  T  + + +        L+ L I            +    +L  LD+S N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 507 S---SSPLVHLTSIEELRLSNNHFRIPVSLEP--LFNHSKLKIFDAKNNEINGEINESHS 561
               +   +   +++ L L N     P  +         +L+  D  +N +         
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 562 LTPKFQLKSLSLSSNYGDSVT 582
             P  QL SL+LS      V 
Sbjct: 250 DWPS-QLNSLNLSFTGLKQVP 269

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.2 bits (164), Expect = 5e-12
 Identities = 36/175 (20%), Positives = 53/175 (30%), Gaps = 35/175 (20%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFN---NNVLSS 130
            +      F  L +LDLS N   G           +   L++L L             + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 131 LARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLS 190
            A    L+ L LS N L  +      D    L  L++    + +  V KGL         
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGL--------- 272

Query: 191 GTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 245
                             L VLD+S N +              L ++  L L+GN
Sbjct: 273 ---------------PAKLSVLDLSYNRL------DRNPSPDELPQVGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 34/247 (13%)

Query: 833  LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW---IDGLSQLSHLNL 889
             S++ +    +      +        SL  L +    +   I      + G+S L  L L
Sbjct: 43   RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 890  AHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF 949
             +  + G  P  L       L  L+  N+           T            KP     
Sbjct: 103  ENLEVTGTAPPPLLEATGPDLNILNLRNVS--------WATRDAWLAELQQWLKPGLKVL 154

Query: 950  SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP----PQIGN 1005
            SI+             F           Q RV   L+ LDLS N  +G            
Sbjct: 155  SIAQAH-------SLNFSCE--------QVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 1006 LTRIQTLNLSHNNLT---GTIPLTFSNLRHIESLDLSYNKLSGKIPRQL-VDLNTLAIFI 1061
               +Q L L +  +    G      +    ++ LDLS+N L            + L    
Sbjct: 200  FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 1062 VAYNNLS 1068
            +++  L 
Sbjct: 260  LSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 6/125 (4%)

Query: 68  SGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNV 127
            GE   ++A     F  L+ L L    +            +    L+ LDLS N+  +  
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGME-TPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 128 -LSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKS 186
              S    S L SL LS   L+             L  LD+  N++D+      L ++ +
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLKQVPK----GLPAKLSVLDLSYNRLDRNPSPDELPQVGN 300

Query: 187 LGLSG 191
           L L G
Sbjct: 301 LSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 20/92 (21%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLN------------------NLKMLDL 118
           +L     QL+ LDLS N++   A     +  S+LN                   L +LDL
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDL 281

Query: 119 SGNAFNNNVLSSLARLSSLRSLYLSDNRLEGS 150
           S N  +     S   L  + +L L  N    S
Sbjct: 282 SYNRLDR--NPSPDELPQVGNLSLKGNPFLDS 311

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (250), Expect = 6e-22
 Identities = 53/332 (15%), Positives = 99/332 (29%), Gaps = 73/332 (21%)

Query: 611 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 670
             +   K        +       L      +   L ++  N    +P  +    P +   
Sbjct: 32  AWDKWEKQALPGENRNEA--VSLLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVL 85

Query: 671 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 730
            I+ NAL  S+P    +   L++LD  +N+L+  +P+  A    +L+ L + NN L   +
Sbjct: 86  EITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLT--M 134

Query: 731 FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 790
                    L ++  + N     +P+  +   SL+ L + NN L+  +P    +L     
Sbjct: 135 LPE--LPALLEYINADNNQLT-MLPELPT---SLEVLSVRNNQLT-FLPELPESL----- 182

Query: 791 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK 850
                                 + LD+S N +  SLP+                     +
Sbjct: 183 ----------------------EALDVSTNLLE-SLPAVPVRNH-------------HSE 206

Query: 851 EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL 910
           E       + +      N +   IP+ I  L     + L  N L   +   L +      
Sbjct: 207 E-------TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 911 LDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 942
                                         P+
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADAVTAWFPE 290

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 93.1 bits (231), Expect = 2e-19
 Identities = 58/367 (15%), Positives = 98/367 (26%), Gaps = 103/367 (28%)

Query: 680  SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI--FSL 737
            SI     N   L   +   N ++              E  +L   + +    S +    +
Sbjct: 2    SIMLPINNNFSLS-QNSFYNTIS-GTYADYFSAWDKWEKQALPGEN-RNEAVSLLKECLI 58

Query: 738  RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 797
                 L L   +    +P +L     +  L +  N L   +P    +L+ L       N 
Sbjct: 59   NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACDNR 111

Query: 798  LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 857
            L   +P       SL+ LD+ +N ++  LP                              
Sbjct: 112  LST-LPELPA---SLKHLDVDNNQLT-MLPELP--------------------------- 139

Query: 858  SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 917
            + L  ++   N L   +P+     + L  L++ +N L   +P        L+ LD+S N 
Sbjct: 140  ALLEYINADNNQLT-MLPELP---TSLEVLSVRNNQLT-FLPELP---ESLEALDVSTNL 191

Query: 918  LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977
            L  L      N                                                 
Sbjct: 192  LESLPAVPVRNHHS---------------------------------------------- 205

Query: 978  QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037
                           N++  HIP  I +L    T+ L  N L+  I  + S         
Sbjct: 206  ----EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

Query: 1038 LSYNKLS 1044
                  S
Sbjct: 261  GPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 87.7 bits (217), Expect = 7e-18
 Identities = 57/295 (19%), Positives = 96/295 (32%), Gaps = 61/295 (20%)

Query: 769  LNNNNLSGKIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLP 827
               N +SG    +       +   +P  N  E    ++ C ++    L ++  N+S SLP
Sbjct: 17   SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLP 75

Query: 828  SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL 887
                P  I  + +++N L   L E      +SL  LD   N L+ ++P+     + L HL
Sbjct: 76   DNLPP-QITVLEITQNALI-SLPE----LPASLEYLDACDNRLS-TLPELP---ASLKHL 125

Query: 888  NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN-NSSPDKPFK 946
            ++ +N L   +P        L+ ++  +N L  L         L    N     P+    
Sbjct: 126  DVDNNQLT-MLPELPA---LLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE---- 177

Query: 947  TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 1006
                                              +   L  LD+S N L   +P      
Sbjct: 178  ----------------------------------LPESLEALDVSTNLLE-SLPAVPVRN 202

Query: 1007 TRIQT----LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 1057
               +          N +T  IP    +L    ++ L  N LS +I   L      
Sbjct: 203  HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.9 bits (202), Expect = 5e-16
 Identities = 48/304 (15%), Positives = 96/304 (31%), Gaps = 54/304 (17%)

Query: 87  SLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNV-LSSLARLSSLRSLYLSDN 145
           S +  +N I         +  S  +  +   L G   N  V L     ++    L L+  
Sbjct: 14  SQNSFYNTI----SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL 69

Query: 146 RLEGSIDVKELDS--LRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREF 203
            L        L       +  L+I  N +      +  + L+ L                
Sbjct: 70  NL------SSLPDNLPPQITVLEITQNALISL--PELPASLEYLDACDNRL------STL 115

Query: 204 -DSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-ARLSSL 261
            +   +L+ LD+  N++  L  P+        + L+ ++   N      L+ +    +SL
Sbjct: 116 PELPASLKHLDVDNNQLTML--PEL------PALLEYINADNNQ-----LTMLPELPTSL 162

Query: 262 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV--EVSRGYRGLRKLKSLDLSGV 319
             L + +N L         +   +LE LD++ N ++++     R +              
Sbjct: 163 EVLSVRNNQLTFL-----PELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR-- 215

Query: 320 GIRDGNKLLQ---SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 376
                N++     ++ S     T+ LE N  ++     + L   T             +S
Sbjct: 216 ----ENRITHIPENILSLDPTCTIILEDNPLSS--RIRESLSQQTAQPDYHGPRIYFSMS 269

Query: 377 LLQS 380
             Q 
Sbjct: 270 DGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.8 bits (199), Expect = 1e-15
 Identities = 49/282 (17%), Positives = 94/282 (33%), Gaps = 64/282 (22%)

Query: 802  IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 861
                + + +   +   + N     L  C       ++ L++  L   L +        + 
Sbjct: 29   YFSAWDKWEKQALPGENRNEAVSLLKECLIN-QFSELQLNRLNLS-SLPDNLP---PQIT 83

Query: 862  TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 921
             L+++ N L  S+P+     + L +L+   N L   +P        L+ LD+ +N L  L
Sbjct: 84   VLEITQNAL-ISLPELP---ASLEYLDACDNRLS-TLPELPA---SLKHLDVDNNQLTML 135

Query: 922  IPSCFDN-TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 979
             P        ++   N  +  P+                                     
Sbjct: 136  -PELPALLEYINADNNQLTMLPEL------------------------------------ 158

Query: 980  RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES---- 1035
               + L  L +  N+L   +P    +L     L++S N L  ++P       H E     
Sbjct: 159  --PTSLEVLSVRNNQL-TFLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIF 211

Query: 1036 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077
                 N+++  IP  ++ L+     I+  N LS +I E  +Q
Sbjct: 212  FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.1 bits (192), Expect = 8e-15
 Identities = 53/305 (17%), Positives = 99/305 (32%), Gaps = 51/305 (16%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSL-ARLSSLRSL 140
             Q   L L+  N++   +N           + +L+++ NA     L SL    +SL  L
Sbjct: 58  INQFSELQLNRLNLSSLPDNLP-------PQITVLEITQNA-----LISLPELPASLEYL 105

Query: 141 YLSDNRLEGSIDVKEL-DSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFD 199
              DNRL        L +    L+ LD+  N++      +  + L+ +            
Sbjct: 106 DACDNRLS------TLPELPASLKHLDVDNNQLTML--PELPALLEYINADNNQLTML-- 155

Query: 200 VREFDSFNNLEVLDMSGNEIDNL-VVPQGLERLS--------------RLSKLKKLDLRG 244
               +   +LEVL +  N++  L  +P+ LE L               R    ++ ++  
Sbjct: 156 ---PELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFF 212

Query: 245 NLCNNSILS---SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEV 301
               N I     ++  L    ++ L  N L   I   E  S    +          ++  
Sbjct: 213 RCRENRITHIPENILSLDPTCTIILEDNPLSSRIR--ESLSQQTAQPDYHGPRIYFSMSD 270

Query: 302 SRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFT 361
            +     R L     +       + + Q   +F         +N F+A L    +  +  
Sbjct: 271 GQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHE----EHANTFSAFLDRLSDTVSAR 326

Query: 362 NLEYL 366
           N    
Sbjct: 327 NTSGF 331

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.4 bits (185), Expect = 6e-14
 Identities = 57/320 (17%), Positives = 109/320 (34%), Gaps = 43/320 (13%)

Query: 205 SFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI-LSSVARLSSLTS 263
             NN     +S N   N +     +  S   K +K  L G   N ++ L     ++  + 
Sbjct: 6   PINNN--FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSE 63

Query: 264 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 323
           L L+   L  S+     +    +  L+I  N + ++           L+ LD        
Sbjct: 64  LQLNRLNLS-SLPD---NLPPQITVLEITQNALISLPEL-----PASLEYLDACD----- 109

Query: 324 GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGS 383
            N+L        SL  L +++N     LT   EL     LEY+  D++ L   L +   S
Sbjct: 110 -NRLSTLPELPASLKHLDVDNNQ----LTMLPEL--PALLEYINADNNQLT-MLPELPTS 161

Query: 384 IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 443
               L+ LS+   ++  +         +SLE LD+           L+ +        + 
Sbjct: 162 ----LEVLSVRNNQLTFL-----PELPESLEALDVSTNL-------LESLPAVPVRNHHS 205

Query: 444 SLSGSTLGTNSSRI--LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ 501
             +        +RI  + + +  L     + +++N L   +   L+  T+          
Sbjct: 206 EETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265

Query: 502 LTGSISSSPLVHLTSIEELR 521
            + S      +H    + + 
Sbjct: 266 FSMSDGQQNTLHRPLADAVT 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.3 bits (164), Expect = 2e-11
 Identities = 44/217 (20%), Positives = 75/217 (34%), Gaps = 54/217 (24%)

Query: 861  VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLH 919
            ++ +  YN ++G+  D+     +     L   N    V  ++ C +NQ   L L+  NL 
Sbjct: 13   LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72

Query: 920  GLIPSCFDN-TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977
             L  +     T L  + N   S P+ P                                 
Sbjct: 73   SLPDNLPPQITVLEITQNALISLPELPAS------------------------------- 101

Query: 978  QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037
                   L  LD   N+L   +P    +L     L++ +N LT  +P   + L +   ++
Sbjct: 102  -------LEYLDACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALLEY---IN 146

Query: 1038 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 1074
               N+L+  +P     L  L    V  N L+  +PE 
Sbjct: 147  ADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPEL 178

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  100 bits (250), Expect = 8e-22
 Identities = 78/508 (15%), Positives = 162/508 (31%), Gaps = 69/508 (13%)

Query: 43  CCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSW---------- 92
           C +W  ++        + L  + T           L   F  L SL L            
Sbjct: 41  CRRWFKIDSETREHVTMALCYTAT--------PDRLSRRFPNLRSLKLKGKPRAAMFNLI 92

Query: 93  NNIAGCAENEGLEGLSR-LNNLKMLDLSGNAFNNNVLSSLAR--LSSLRSLYLSDNRLEG 149
               G      +  +S  L  LK +       ++  L  LA+     L +L L       
Sbjct: 93  PENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152

Query: 150 SIDVKEL-DSLRDLEELDIGGNKIDK------FMVSKGLSKLKSLGLSGTGFKGTFD--- 199
           +  +  +    R ++ L +  +   +        +++  + L+ L    T F        
Sbjct: 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212

Query: 200 VREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLS 259
                +  +L  + +   EI  LV     +  + L +     L  ++       ++    
Sbjct: 213 ETIARNCRSLVSVKVGDFEILELVGF--FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270

Query: 260 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGV 319
            L  L LS+  +  +     F   + + +LD+    ++  +     +    L+ L+   V
Sbjct: 271 KLCRLGLSY--MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV 328

Query: 320 GIRDGNKLLQSMGSF-PSLNTLHLESNNFTATLTTTQEL----------HNFTNLEYLTL 368
               G++ L+ +  +   L  L +E       +   + L               LEY+ +
Sbjct: 329 I---GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385

Query: 369 DDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP--------HFKSLEHLDMRF 420
             S +    L+SIG+   +L +  +   +    ++               K L       
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445

Query: 421 ARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH----LQELYIDNN 476
            +  L    L  IG+  P+++++ L             D+GL   +     LQ+L +   
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGY-------VGESDEGLMEFSRGCPNLQKLEMRGC 498

Query: 477 DL-RGSLPWCLANTTSLRILDVSFNQLT 503
                ++   +    SLR L V   + +
Sbjct: 499 CFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 93.1 bits (231), Expect = 2e-19
 Identities = 63/418 (15%), Positives = 134/418 (32%), Gaps = 37/418 (8%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLN-NLKMLDLS---GNAFNNNVLSSL 131
            S+ T  +++++L +  ++ +   + + L  L++ N +L++L+         +   L ++
Sbjct: 157 LSIVTHCRKIKTLLMEESSFSE-KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215

Query: 132 A-RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGG-----NKIDKFMVSKGLSKLK 185
           A    SL S+ + D  +     V    +  +LEE   G         +K+M      KL 
Sbjct: 216 ARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273

Query: 186 SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 245
            LGLS  G      +  F     +  LD+       L        + +   L+ L+ R  
Sbjct: 274 RLGLSYMGPNEMPIL--FPFAAQIRKLDLLYA---LLETEDHCTLIQKCPNLEVLETRNV 328

Query: 246 LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKE-----------FDSLSNLEELDINDN 294
           + +  +         L  L +     +  ++ +E                 LE + +  +
Sbjct: 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388

Query: 295 EIDNVEVSRGYRGLRKLKSLDLSGVGIRDG-------NKLLQSMGSFPSLNTLHLESNNF 347
           +I N  +      L+ L    L  +   +        N +   +     L          
Sbjct: 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448

Query: 348 TATLTTTQEL-HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG 406
             T      +     N+ ++ L         L       P+L+ L M GC  +       
Sbjct: 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508

Query: 407 FPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCP 464
                SL +L ++  R ++    L  +     +++ +             I +     
Sbjct: 509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPA 566

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 68.0 bits (166), Expect = 1e-11
 Identities = 76/540 (14%), Positives = 166/540 (30%), Gaps = 82/540 (15%)

Query: 230 RLSRLSKLKKLDLRGNLCNNSILSSVA-RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 288
           R  ++    +  +   LC  +    ++ R  +L SL L                 +    
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKG-----------KPRAAMFNL 91

Query: 289 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 348
           +  N        V+     LR+LKS+    + + D +    +      L TL L+  +  
Sbjct: 92  IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151

Query: 349 ATLTTTQELHNFTNLEYLTLDDSSLH---ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQ 405
            T      + +   ++ L +++SS        L  +     SL+ L+    E   + S +
Sbjct: 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI-SPK 210

Query: 406 GFPHF----KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQ- 460
                    +SL  + +    I     F +       +L+                    
Sbjct: 211 DLETIARNCRSLVSVKVGDFEILELVGFFKA----AANLEEFCGGSLNEDIGMPEKYMNL 266

Query: 461 -GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEE 519
                L  L   Y+  N++    P+       +R LD+ +  L      + +    ++E 
Sbjct: 267 VFPRKLCRLGLSYMGPNEMPILFPFA----AQIRKLDLLYALLETEDHCTLIQKCPNLEV 322

Query: 520 LRLSNNHFRIPVSLEPLFNH-SKLKIFD-AKNNEINGEINESHSLTPK---------FQL 568
           L   N        LE L  +  +LK     +  +  G  +E   ++ +          +L
Sbjct: 323 LETRNVIGD--RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380

Query: 569 KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 628
           + +++  +   + +      +   L +  L  +       +  L+N              
Sbjct: 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG------------- 427

Query: 629 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 688
               R  +   K+LR                + D+          ++ +    P+     
Sbjct: 428 ---VRSLLIGCKKLRRFAFYLR------QGGLTDL---------GLSYIGQYSPN----- 464

Query: 689 IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEG 747
             ++++ L     + E     +  C NL+ L +          +     L +LR+L ++G
Sbjct: 465 --VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 62.7 bits (152), Expect = 4e-10
 Identities = 79/584 (13%), Positives = 159/584 (27%), Gaps = 128/584 (21%)

Query: 357 LHNFTNLEYLTL--------------DDSSLHISLLQSIGSIFPSLKNLSMSGCEV-NGV 401
              F NL  L L              +        +  I +    LK++      V +  
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 402 LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 461
           L          LE L +        T  L  I      +K L +  S+      + L + 
Sbjct: 129 LDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187

Query: 462 LCPLAHLQELYIDNNDLRG----SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
                 L+ L     +        L     N  SL  + V   ++   +         ++
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG--FFKAAANL 245

Query: 518 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 577
           EE    + +  I +  + +                        +L    +L  L LS   
Sbjct: 246 EEFCGGSLNEDIGMPEKYM------------------------NLVFPRKLCRLGLSYMG 281

Query: 578 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND-SLAGPFRLPI 636
            + +  P       ++++ +L +  +  E    L++    LE L   N     G   L  
Sbjct: 282 PNEM--PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL-A 338

Query: 637 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL 696
              K+L+ L +     +  +  E G +          + AL             L+++ +
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVS------QRGLIALAQGCQE-------LEYMAV 385

Query: 697 SNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ 756
             + +T E  + +     NL    L     +  I              L  ++ V  +  
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERI------------TDLPLDNGVRSL-- 431

Query: 757 SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILD 816
            L  C  L+                L +  GL +I                   +++ + 
Sbjct: 432 -LIGCKKLRRFAFYLR------QGGLTD-LGLSYIGQ--------------YSPNVRWML 469

Query: 817 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL-NGSIP 875
           +     S           +     S+              C +L  L++        +I 
Sbjct: 470 LGYVGESDE--------GLM--EFSRG-------------CPNLQKLEMRGCCFSERAIA 506

Query: 876 DWIDGLSQLSHLNLAHNNL----EGEVPIQLCRLNQLQLLDLSD 915
             +  L  L +L +         +  + +     N ++L+    
Sbjct: 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN-IELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.5 bits (136), Expect = 4e-08
 Identities = 50/428 (11%), Positives = 123/428 (28%), Gaps = 49/428 (11%)

Query: 659  EIGDILPSLVYFNIS-MNALDGSIPS-SFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVN 715
            EI + L  L   +   M   D  +   +      L+ L L   +  T +    +   C  
Sbjct: 106  EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK 165

Query: 716  LEFLSLSNNSLKGHIFSRIFSL----RNLRWLLLEGNHFVGEIPQSL----SKCSSLKGL 767
            ++ L +  +S        +  L     +L  L      F    P+ L      C SL  +
Sbjct: 166  IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 768  YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC------RLDSLQILDISDNN 821
             + +  +  ++  +      L+       + +  +P ++       +L  L +  +  N 
Sbjct: 226  KVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 822  ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 881
            +    P       I+++ L   +L  +        C +L  L+      +  +       
Sbjct: 285  MPILFPFAA---QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341

Query: 882  SQLSHLNLAHNNLEGEVPIQLCRLN------------QLQLLDLSDNN-----LHGLIPS 924
             QL  L +     E  +  +   ++            +L+ + +  ++     L  +   
Sbjct: 342  KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401

Query: 925  CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK-KILEIFEFTTK--NIAYAYQGRV 981
              +         +             +       +K +    +       ++  +Y G+ 
Sbjct: 402  LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 982  LSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRHIESL 1036
               +  + L         +            +Q L +     +   I    + L  +  L
Sbjct: 462  SPNVRWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518

Query: 1037 DLSYNKLS 1044
             +   + S
Sbjct: 519  WVQGYRAS 526

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 98.8 bits (246), Expect = 3e-21
 Identities = 71/478 (14%), Positives = 156/478 (32%), Gaps = 63/478 (13%)

Query: 74  LNASLFTPFQQLESLDLSW-----------NNIAGCAENEGLEGLSRLNNLKMLDLSGNA 122
             A++   F ++ S++L             +   G          S    L+ + L    
Sbjct: 57  SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV 116

Query: 123 FNNNVLSSLAR-LSSLRSLYLSDNRLEGSIDVKEL-DSLRDLEELDIGGNKIDKF----- 175
             ++ L  +A+   + + L LS      +  +  +  + R+L+ELD+  + +D       
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176

Query: 176 -MVSKGLSKLKSLGLSGTGFKGTFD--VREFDSFNNLEVLDMSGNEIDNLVVPQGLERLS 232
                  + L SL +S    + +F    R      NL+ L ++       +       L 
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL----LQ 232

Query: 233 RLSKLKKLDLRG------NLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNL 286
           R  +L++L   G          + +  +++    L  L    + +   + A  +   S L
Sbjct: 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV-YSVCSRL 291

Query: 287 EELDINDNEIDNVEVSRGYRGLRKLKSLDL-SGVGIRDGNKLLQSMGSFPSLNTLHLESN 345
             L+++   + + ++ +      KL+ L +   +       L  +      L     E  
Sbjct: 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPF 351

Query: 346 NFTATLTTTQE-----LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNG 400
                +  T++           LE +      +  + L +I    P++    +   E   
Sbjct: 352 VMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411

Query: 401 VLSGQGFP----------HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 450
                  P          H K L  L +      L     + IG     ++ LS++    
Sbjct: 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG---LLTDKVFEYIGTYAKKMEMLSVAF--- 465

Query: 451 GTNSSRILDQGLCPLA----HLQELYIDNNDLRG-SLPWCLANTTSLRILDVSFNQLT 503
               +   D G+  +      L++L I +      +L    +   ++R L +S   ++
Sbjct: 466 ----AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 83.0 bits (205), Expect = 2e-16
 Identities = 88/535 (16%), Positives = 169/535 (31%), Gaps = 87/535 (16%)

Query: 278 KEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGV-GIRDGNKLLQSMG---- 332
           K +  +       +       V  +   R   K++S++L G     D N +    G    
Sbjct: 35  KSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVY 94

Query: 333 --------SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD-SSLHISLLQSIGS 383
                   S+  L  + L+    T          +F N + L L          L +I +
Sbjct: 95  PWIEAMSSSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA 153

Query: 384 IFPSLKNLSMSGCEVNGVLSGQGFPHF----KSLEHLDMRFARIALNTSFLQIIGESMPS 439
              +LK L +   +V+ V SG    HF     SL  L++      ++ S L+ +    P+
Sbjct: 154 TCRNLKELDLRESDVDDV-SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212

Query: 440 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELY------IDNNDLRGSLPWCLANTTSLR 493
           LK L L+ +      + +L +   P   L+EL           D+   L   L+    LR
Sbjct: 213 LKSLKLNRAVPLEKLATLLQR--AP--QLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268

Query: 494 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 553
            L   F     +   +     + +  L LS         L  L                 
Sbjct: 269 CLS-GFWDAVPAYLPAVYSVCSRLTTLNLSYATV-QSYDLVKLLCQCP------------ 314

Query: 554 GEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLE 613
                        +L+ L +     D+           +L+E  +   +     PN  L 
Sbjct: 315 -------------KLQRLWVLDYIEDA-GLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360

Query: 614 NNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNIS 673
               L  +                   +L  +            + I    P++  F + 
Sbjct: 361 EQG-LVSV--------------SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 674 -----------MNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 722
                      +  LD    +   +   L+ L LS   LT ++ +++      +E LS++
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVA 464

Query: 723 NNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGE-IPQSLSKCSSLKGLYLNNNNLS 775
                      +     +LR L +    F  + +  + SK  +++ L++++ ++S
Sbjct: 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 78.0 bits (192), Expect = 8e-15
 Identities = 76/552 (13%), Positives = 154/552 (27%), Gaps = 106/552 (19%)

Query: 230 RLSRLSKLKKLDLRGNLCNNSILSSVA-RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 288
               + +  +  +    C     ++V  R   + S+ L                 ++   
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKG-----------KPHFADFNL 84

Query: 289 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 348
           +           +         L+ + L  + + D             L  +        
Sbjct: 85  VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-----------CLELI-------- 125

Query: 349 ATLTTTQELHNFTNLEYLTLDD-SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 407
                     +F N + L L          L +I +   +LK L +   +V+ V SG   
Sbjct: 126 --------AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV-SGHWL 176

Query: 408 PHF----KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 463
            HF     SL  L++      ++ S L+ +    P+LK L L+ +      + +L +   
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR--A 234

Query: 464 PLAHLQELY------IDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
           P   L+EL           D+   L   L+    LR L   F     +   +     + +
Sbjct: 235 P--QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWDAVPAYLPAVYSVCSRL 291

Query: 518 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 577
             L LS         L  L                              +L+ L +    
Sbjct: 292 TTLNLSYATV-QSYDLVKLLCQCP-------------------------KLQRLWVLDYI 325

Query: 578 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW---------LLENNTKLEFL--YLVND 626
            D+           +L+E  +   +     PN          +     KLE +  +    
Sbjct: 326 EDA-GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384

Query: 627 SLAGPFRLPIHSHKRLRFLDVSNNNFQG--HIPVEIGDI--------LPSLVYFNISMNA 676
           + A        +   +    +     +   ++ +E  DI           L   ++S   
Sbjct: 385 TNAA-LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL 443

Query: 677 LDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN-NSLKGHIFSRIF 735
            D            ++ L ++    +     H+   C +L  L + +       + +   
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503

Query: 736 SLRNLRWLLLEG 747
            L  +R L +  
Sbjct: 504 KLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.8 bits (150), Expect = 8e-10
 Identities = 75/564 (13%), Positives = 158/564 (28%), Gaps = 110/564 (19%)

Query: 358 HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 417
           +         +   + +     ++   FP ++++ + G            PHF     + 
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK-----------PHFADFNLVP 86

Query: 418 MRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA----HLQELYI 473
             +        +++ +  S   L+ + L           + D  L  +A    + + L +
Sbjct: 87  DGWG--GYVYPWIEAMSSSYTWLEEIRLKRMV-------VTDDCLELIAKSFKNFKVLVL 137

Query: 474 DNNDL--RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL----TSIEELRLSNNHF 527
            + +      L    A   +L+ LD+  + +   +S   L H     TS+  L +S    
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVSLNISCLAS 196

Query: 528 RI-PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 586
            +   +LE L                               LKSL L+            
Sbjct: 197 EVSFSALERLVTRCP-------------------------NLKSLKLNRAVPLE-KLATL 230

Query: 587 LYHQHELKEAELSHIKMIGEFPNW-----LLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 641
           L    +L+E              +      L    +L  L    D++            R
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 642 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS---- 697
           L  L++S    Q +  V++    P L    +     D  +         L+ L +     
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEP 350

Query: 698 -----NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI-FSLRNLRWLLLEGNHFV 751
                N  LT +    ++M C  LE +      +       I  +  N+           
Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF-------- 402

Query: 752 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 811
                 L         YL    L       + + K L+ + +     +            
Sbjct: 403 -----RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKK 457

Query: 812 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY-NYL 870
           +++L ++    S           +   H+                C SL  L++    + 
Sbjct: 458 MEMLSVAFAGDSDL--------GMH--HVLSG-------------CDSLRKLEIRDCPFG 494

Query: 871 NGSIPDWIDGLSQLSHLNLAHNNL 894
           + ++      L  +  L ++  ++
Sbjct: 495 DKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 6e-06
 Identities = 59/451 (13%), Positives = 126/451 (27%), Gaps = 76/451 (16%)

Query: 660  IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 719
              D       +   +     ++ SS+     L+ + L    +T +  + +A    N + L
Sbjct: 79   FADFNLVPDGWGGYVYPWIEAMSSSYTW---LEEIRLKRMVVTDDCLELIAKSFKNFKVL 135

Query: 720  SLSN-NSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLS------------------ 759
             LS+         + I +  RNL+ L L  +         LS                  
Sbjct: 136  VLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195

Query: 760  -------------KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM------PKNHLEG 800
                         +C +LK L LN      K+   L     L+ +         +  +  
Sbjct: 196  SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255

Query: 801  PIPVEFCRLDSLQIL----DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 856
             + V       L+ L    D     +      C     +  ++LS   +           
Sbjct: 256  GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC---SRLTTLNLSYATVQSYDLVKLLCQ 312

Query: 857  CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP---------IQLCR-LN 906
            C  L  L +     +  +         L  L +  +      P         + +     
Sbjct: 313  CPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372

Query: 907  QLQLL-----DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFK--TSFSISG-PQGSV 958
            +L+ +      +++  L  +  +  + T          +PD               +   
Sbjct: 373  KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432

Query: 959  EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNL 1014
            + + L +    T +  + Y G     +  L ++        + H+   +     ++ L +
Sbjct: 433  DLRRLSLSGLLT-DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV---LSGCDSLRKLEI 488

Query: 1015 SH-NNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
                     +    S L  + SL +S   +S
Sbjct: 489  RDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 60/229 (26%), Positives = 96/229 (41%), Gaps = 45/229 (19%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA- 132
           L +  F  F +L+ LDLS   I      +G      L++L  L L+GN      + SLA 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQ--TIEDGA--YQSLSHLSTLILTGNP-----IQSLAL 93

Query: 133 ----RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLG 188
                LSSL+ L   +  L  S++   +  L+ L+EL++  N I            K   
Sbjct: 94  GAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI---------QSFKLPE 143

Query: 189 LSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCN 248
                         F +  NLE LD+S N+I ++        L  L ++  L+L  +L  
Sbjct: 144 Y-------------FSNLTNLEHLDLSSNKIQSI--YCTD--LRVLHQMPLLNLSLDLSL 186

Query: 249 N---SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
           N    I     +   L  L L  N L+ S+    FD L++L+++ ++ N
Sbjct: 187 NPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 87.3 bits (217), Expect = 5e-19
 Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 40/241 (16%)

Query: 135 SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF 194
            S ++L LS N L   +      S  +L+ LD+   +I                      
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ--------------------- 65

Query: 195 KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSS 254
             T +   + S ++L  L ++GN I +L    G    S LS L+KL       N + L +
Sbjct: 66  --TIEDGAYQSLSHLSTLILTGNPIQSL--ALGA--FSGLSSLQKLVAVET--NLASLEN 117

Query: 255 VA--RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 312
                L +L  L+++HN++Q     + F +L+NLE LD++ N+I ++      R L ++ 
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMP 176

Query: 313 SLDLSGVGIRDGNKLLQ-SMGSFPSLN--TLHLESNNFTATLTTTQELHNFTNLEYLTLD 369
            L+LS       N +     G+F  +    L L++N   +           T+L+ + L 
Sbjct: 177 LLNLSLD--LSLNPMNFIQPGAFKEIRLKELALDTNQLKS--VPDGIFDRLTSLQKIWLH 232

Query: 370 D 370
            
Sbjct: 233 T 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 81.6 bits (202), Expect = 6e-17
 Identities = 60/293 (20%), Positives = 92/293 (31%), Gaps = 83/293 (28%)

Query: 753  EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
            +IP +L    S K L L+ N L   +                           F     L
Sbjct: 21   KIPDNLP--FSTKNLDLSFNPLR-HLG-----------------------SYSFFSFPEL 54

Query: 813  QILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 870
            Q+LD+S   I  ++    +  L  +  + L+ N +   L  G F   SSL  L      L
Sbjct: 55   QVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112

Query: 871  NGSIPDWI-DGLSQLSHLNLAHNNL-EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928
              S+ ++    L  L  LN+AHN +   ++P     L  L+ LDLS N +  +  +    
Sbjct: 113  A-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 929  TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 988
                                                               ++  L   L
Sbjct: 172  LH-------------------------------------------------QMPLLNLSL 182

Query: 989  DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041
            DLS N +   I P      R++ L L  N L       F  L  ++ + L  N
Sbjct: 183  DLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 17/197 (8%)

Query: 682 PSSFGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIFS- 736
             SF +   LQ LDLS  ++   I       L     +L  L L+ N ++  +    FS 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSL----SHLSTLILTGNPIQ-SLALGAFSG 98

Query: 737 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL-SGKIPRWLGNLKGLQHIVMPK 795
           L +L+ L+    +        +    +LK L + +N + S K+P +  NL  L+H+ +  
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 796 NHLEGPIPVEFCRLDSLQI----LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE 851
           N ++     +   L  + +    LD+S N ++   P  F  + +K++ L  N L   + +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPD 217

Query: 852 GTFFNCSSLVTLDLSYN 868
           G F   +SL  + L  N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.5 bits (194), Expect = 6e-16
 Identities = 55/267 (20%), Positives = 88/267 (32%), Gaps = 69/267 (25%)

Query: 681 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRN 739
           +P S       + LDLS N L   +  +       L+ L LS   ++  I    +  L +
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 740 LRWLLLEGNHFVGEIPQSL-SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 798
           L  L+L GN  +  +     S  SSL+ L     NL+  +                    
Sbjct: 78  LSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLA-SLE------------------- 116

Query: 799 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS 858
                     L +L+ L+++ N I  S                            F N +
Sbjct: 117 ----NFPIGHLKTLKELNVAHNLIQ-SFKL----------------------PEYFSNLT 149

Query: 859 SLVTLDLSYNYLNGSIPDWI-DGLSQL----SHLNLAHNNLEGEVPIQLCRLNQLQLLDL 913
           +L  LDLS N +  SI       L Q+      L+L+ N +   +     +  +L+ L L
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELAL 207

Query: 914 SDNNLHGLIPSCFDN----TTLHESYN 936
             N L  +    FD       +    N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 59/261 (22%), Positives = 97/261 (37%), Gaps = 47/261 (18%)

Query: 247 CNNSILSSV-ARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 304
           C       +   L  S  +L LS N L+  + +  F S   L+ LD++  EI  +E    
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDG-A 71

Query: 305 YRGLRKLKSLDLSGVGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHN 359
           Y+ L  L +L L+G      N + QS+  G+F    SL  L     N  +       + +
Sbjct: 72  YQSLSHLSTLILTG------NPI-QSLALGAFSGLSSLQKLVAVETNLASLENFP--IGH 122

Query: 360 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 419
              L+ L +  + +     QS                ++        F +  +LEHLD+ 
Sbjct: 123 LKTLKELNVAHNLI-----QSF---------------KLPEY-----FSNLTNLEHLDLS 157

Query: 420 FARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR 479
             +I    S        +  +  L+LS   L  N    +  G      L+EL +D N L+
Sbjct: 158 SNKI---QSIYCTDLRVLHQMPLLNLSLD-LSLNPMNFIQPGAFKEIRLKELALDTNQLK 213

Query: 480 GSLPWCLANTTSLRILDVSFN 500
                     TSL+ + +  N
Sbjct: 214 SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 54/243 (22%), Positives = 77/243 (31%), Gaps = 62/243 (25%)

Query: 832  PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 890
            P S K + LS N L   L   +FF+   L  LDLS   +  +I D     LS LS L L 
Sbjct: 27   PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 891  HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFS 950
             N ++         L+ LQ L   + NL  L      +                      
Sbjct: 85   GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH---------------------- 122

Query: 951  ISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRI 1009
                                           L  L  L+++ N +     P+   NLT +
Sbjct: 123  -------------------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 1010 QTLNLSHNNLTGTIPLTFSNLRHIE----SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 1065
            + L+LS N +          L  +     SLDLS N ++  I         L    +  N
Sbjct: 152  EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTN 210

Query: 1066 NLS 1068
             L 
Sbjct: 211  QLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 9e-08
 Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 73/252 (28%)

Query: 436 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRI 494
           S P L+ L LS   + T            L+HL  L +  N ++ SL     +  +SL+ 
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQS----LSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104

Query: 495 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING 554
           L      L  S+ + P+ HL +++EL +++N  +   S +        + F         
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ---SFK------LPEYFS-------- 146

Query: 555 EINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLEN 614
                 +LT    L+ L LSSN                        I+ I       L  
Sbjct: 147 ------NLT---NLEHLDLSSN-----------------------KIQSI---YCTDLRV 171

Query: 615 NTKLEF----LYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS 666
             ++      L L  + +     G F+       RL+ L +  N  +  +P  I D L S
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLKELALDTNQLK-SVPDGIFDRLTS 225

Query: 667 LVYFNISMNALD 678
           L    +  N  D
Sbjct: 226 LQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 25/179 (13%)

Query: 407 FPHFKSLEHLDMRFARIALNTSFLQIIGE----SMPSLKYLSLSGSTLGTNSSRILDQGL 462
           F  F  L+ LD       L+   +Q I +    S+  L  L L+G+ + + +        
Sbjct: 48  FFSFPELQVLD-------LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-- 98

Query: 463 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 522
             L+ LQ+L     +L     + + +  +L+ L+V+ N +          +LT++E L L
Sbjct: 99  --LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 523 SNNHFRIPVSLEP-LFNHSKLKIFDAKNNEINGEINESHSLTP----KFQLKSLSLSSN 576
           S+N  +   S+         L      N  ++  +N  + + P    + +LK L+L +N
Sbjct: 157 SSNKIQ---SIYCTDL--RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 93.6 bits (233), Expect = 4e-21
 Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 104 LEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLE 163
           +     L N    +L   +  +  L S   LS +++    ++ ++    +  +    +L+
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLK 66

Query: 164 ELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLV 223
           EL +  N+I      K L+KL+ L ++    K             L  L +  NE+ +  
Sbjct: 67  ELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL----NGIPSACLSRLFLDNNELRD-- 120

Query: 224 VPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL 283
                + L  L  L+ L +R N      +  +  LS L  L L  N +    +      L
Sbjct: 121 ----TDSLIHLKNLEILSIRNN--KLKSIVMLGFLSKLEVLDLHGNEIT---NTGGLTRL 171

Query: 284 SNLEELDINDNEIDNVEVSR 303
             +  +D+   +  N  V  
Sbjct: 172 KKVNWIDLTGQKCVNEPVKY 191

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 49/219 (22%), Positives = 84/219 (38%), Gaps = 24/219 (10%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
              +++ +   +NI      + L G+    NLK L LS N  ++  LS L  L+ L  L 
Sbjct: 40  LSGVQNFNGDNSNI------QSLAGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELS 91

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVR 201
           ++ NRL+   ++  + S   L  L +  N++        L  L+ L +     K    + 
Sbjct: 92  VNRNRLK---NLNGIPSAC-LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK---SIV 144

Query: 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 261
                + LEVLD+ GNEI N         L+RL K+  +DL G  C N  +        L
Sbjct: 145 MLGFLSKLEVLDLHGNEITN------TGGLTRLKKVNWIDLTGQKCVNEPVK---YQPEL 195

Query: 262 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVE 300
              +   +     I      +  +  +  +        +
Sbjct: 196 YITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTD 234

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 22/197 (11%)

Query: 152 DVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEV 211
            V     L +  + ++G   +   +  K LS +++     +  +    +     F NL+ 
Sbjct: 11  QVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKE 67

Query: 212 LDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNIL 271
           L +S N+I +      L  L  L+KL++L +  N      L+ +     L+ L L +N L
Sbjct: 68  LHLSHNQISD------LSPLKDLTKLEELSVNRN--RLKNLNGIPSA-CLSRLFLDNNEL 118

Query: 272 QGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM 331
           +   D      L NLE L I +N++ ++        L KL+ LDL G  I +       +
Sbjct: 119 R---DTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITN----TGGL 168

Query: 332 GSFPSLNTLHLESNNFT 348
                +N + L      
Sbjct: 169 TRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 28/197 (14%)

Query: 357 LHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEH 415
                N     L   S+  +   +        ++N +      + + S  G   F +L+ 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKE----LSGVQNFNGDN---SNIQSLAGMQFFTNLKE 67

Query: 416 LDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDN 475
           L +   +I+ + S L    + +  L+ LS++ +       R+ +    P A L  L++DN
Sbjct: 68  LHLSHNQIS-DLSPL----KDLTKLEELSVNRN-------RLKNLNGIPSACLSRLFLDN 115

Query: 476 NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 535
           N+LR +    L +  +L IL +  N+L    S   L  L+ +E L L  N      +   
Sbjct: 116 NELRDTDS--LIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT---NTGG 167

Query: 536 LFNHSKLKIFDAKNNEI 552
           L    K+   D    + 
Sbjct: 168 LTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 40/228 (17%)

Query: 691 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 750
               +L    +T  +          ++  +  N++++    + +    NL+ L L  N  
Sbjct: 21  AVKQNLGKQSVTDLVS--QK-ELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQ- 74

Query: 751 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 810
           + ++   L   + L+ L +N N L   +   + +   L  + +  N L          L 
Sbjct: 75  ISDLS-PLKDLTKLEELSVNRNRLK-NLNG-IPSAC-LSRLFLDNNELRDTDS--LIHLK 128

Query: 811 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 870
           +L+IL I +N +           SI  +                   S L  LDL  N +
Sbjct: 129 NLEILSIRNNKLK----------SIVMLG----------------FLSKLEVLDLHGNEI 162

Query: 871 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 918
             +    +  L +++ ++L       E       L     +   D   
Sbjct: 163 T-NTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 21/191 (10%)

Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
               LA+  +  +    +   +       + ++  +   + +    S + +   T+++EL
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDS 580
            LS+N       L PL + +KL+      N +   +N   S      L  L L +N    
Sbjct: 69  HLSHNQIS---DLSPLKDLTKLEELSVNRNRLK-NLNGIPSAC----LSRLFLDNN---E 117

Query: 581 VTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK 640
           +     L H   L+   + + K +       L   +KLE L L  + +       +   K
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITNT--GGLTRLK 172

Query: 641 RLRFLDVSNNN 651
           ++ ++D++   
Sbjct: 173 KVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 21/191 (10%)

Query: 635 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 694
           P          ++   +    +  +    L  +  FN   + +     +       L+ L
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVSQKE---LSGVQNFNGDNSNI--QSLAGMQFFTNLKEL 68

Query: 695 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR--NLRWLLLEGNHFVG 752
            LS+N+++ ++   L      LE LS++ N L       +  +    L  L L+ N    
Sbjct: 69  HLSHNQIS-DLSP-LKDL-TKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNEL-- 118

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
               SL    +L+ L + NN L   I   LG L  L+ + +  N +     +   RL  +
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGLT--RLKKV 174

Query: 813 QILDISDNNIS 823
             +D++     
Sbjct: 175 NWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 44/190 (23%)

Query: 856  NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 915
              S +   +   + +  S+   +   + L  L+L+HN +    P  L  L +L+ L ++ 
Sbjct: 39   ELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94

Query: 916  NNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 974
            N L  L        + L    N     D       S+                       
Sbjct: 95   NRLKNLNGIPSACLSRLFLDNNELRDTD-------SLIH--------------------- 126

Query: 975  YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 1034
                   L  L  L +  NKL   I   +G L++++ L+L  N +T T  L  + L+ + 
Sbjct: 127  -------LKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGL--TRLKKVN 175

Query: 1035 SLDLSYNKLS 1044
             +DL+  K  
Sbjct: 176  WIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 48/274 (17%), Positives = 79/274 (28%), Gaps = 58/274 (21%)

Query: 509 SPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL 568
            P   L +  +  L          L      S ++ F+  N+ I   +      T    L
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFT---NL 65

Query: 569 KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 628
           K L LS N                    ++S +          L++ TKLE L +  + L
Sbjct: 66  KELHLSHN--------------------QISDLSP--------LKDLTKLEELSVNRNRL 97

Query: 629 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALDGSIPS 683
                L       L  L + NN         + D      L +L   +I  N L  SI  
Sbjct: 98  K---NLNGIPSACLSRLFLDNNE--------LRDTDSLIHLKNLEILSIRNNKLK-SI-V 144

Query: 684 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 743
             G +  L+ LDL  N++T             + ++ L+              L     +
Sbjct: 145 MLGFLSKLEVLDLHGNEITNTGGLT---RLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 744 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK 777
                 ++   P  +S   S     +        
Sbjct: 202 KDPDGRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 24/193 (12%)

Query: 878  IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFDN-TTLHESY 935
              GL+     NL   ++   V  +   L+ +Q  +  ++N+  L     F N   LH S+
Sbjct: 15   DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSH 72

Query: 936  NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 995
            N  S           +S  +   + + L +     KN+     G   + L+ L L  N+L
Sbjct: 73   NQIS----------DLSPLKDLTKLEELSVNRNRLKNL----NGIPSACLSRLFLDNNEL 118

Query: 996  VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 1055
                   + +L  ++ L++ +N L   + L    L  +E LDL  N+++      L  L 
Sbjct: 119  R-DTDS-LIHLKNLEILSIRNNKLKSIVML--GFLSKLEVLDLHGNEITNTGG--LTRLK 172

Query: 1056 TLAIFIVAYNNLS 1068
             +    +      
Sbjct: 173  KVNWIDLTGQKCV 185

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 90.0 bits (224), Expect = 1e-20
 Identities = 33/171 (19%), Positives = 72/171 (42%), Gaps = 12/171 (7%)

Query: 130 SLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGL 189
           + A+++SL  + L++  +    D+  ++   ++++L I       +    GLS L+ L +
Sbjct: 39  TEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRI 95

Query: 190 SGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNN 249
            G     +  +       +L +LD+S +  D+      L +++ L K+  +DL  N    
Sbjct: 96  MGKDVT-SDKIPNLSGLTSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAIT 150

Query: 250 SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVE 300
            I   +  L  L SL++  + +    D +  +    L +L      I   +
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 89.2 bits (222), Expect = 2e-20
 Identities = 38/205 (18%), Positives = 77/205 (37%), Gaps = 16/205 (7%)

Query: 119 SGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS 178
              A  +NV    +   +  +  L  +    +I   +++SL     + +    +      
Sbjct: 7   GLKASQDNVNIPDSTFKAYLNGLLGQSST-ANITEAQMNSL---TYITLANINVTDLTGI 62

Query: 179 KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLK 238
           +    +K L ++        +       +NLE L + G ++ +      +  LS L+ L 
Sbjct: 63  EYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSD----KIPNLSGLTSLT 115

Query: 239 KLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDN 298
            LD+  +  ++SIL+ +  L  + S+ LS+N     I      +L  L+ L+I  + + +
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD 173

Query: 299 VEVSRGYRGLRKLKSLDLSGVGIRD 323
                G     KL  L      I  
Sbjct: 174 YR---GIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
              ++ L ++  +            +S L+NL+ L + G    ++ + +L+ L+SL  L 
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGN-KIDKFMVSKGLSKLKSLGLSGTGFKGTFDV 200
           +S +  +    + ++++L  +  +D+  N  I   M  K L +LKSL +   G     D 
Sbjct: 119 ISHSAHD-DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH---DY 174

Query: 201 REFDSFNNLEVLDMSGNEIDNL 222
           R  + F  L  L      I   
Sbjct: 175 RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 17/171 (9%)

Query: 385 FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLS 444
             SL  ++++   V  +    G  +  +++ L +       N + +      + +L+ L 
Sbjct: 43  MNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHAT-NYNPI----SGLSNLERLR 94

Query: 445 LSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 504
           + G  + ++        L  L  L  L I ++    S+   +     +  +D+S+N    
Sbjct: 95  IMGKDVTSDKI----PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 505 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 555
            I   PL  L  ++ L +  +          + +  KL    A +  I G+
Sbjct: 151 DI--MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 4e-13
 Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 14/170 (8%)

Query: 232 SRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI 291
           ++++ L  + L     N + L+ +    ++  L +++       +      LSNLE L I
Sbjct: 41  AQMNSLTYITLANI--NVTDLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRI 95

Query: 292 NDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATL 351
              ++ + ++     GL  L  LD+S     D    L  + + P +N++ L  N     +
Sbjct: 96  MGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGA---I 149

Query: 352 TTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV 401
           T    L     L+ L +      +   + I   FP L  L      + G 
Sbjct: 150 TDIMPLKTLPELKSLNIQFD--GVHDYRGIED-FPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 8/135 (5%)

Query: 691 LQFLDLSNNKLTGEIP-DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 749
           ++ L ++N   T   P   L     NLE L +    +       +  L +L  L +  + 
Sbjct: 68  IKDLTINNIHATNYNPISGL----SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 750 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL 809
               I   ++    +  + L+ N     I   L  L  L+ + +  + +     +E    
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DF 180

Query: 810 DSLQILDISDNNISG 824
             L  L      I G
Sbjct: 181 PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 31/182 (17%)

Query: 737 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN 796
           + +L ++ L   + V ++   +    ++K L +NN + +   P  +  L  L+ + +   
Sbjct: 43  MNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 797 HLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 856
            +          L SL +LDIS +    S+ +                            
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN------------------------T 134

Query: 857 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 916
              + ++DLSYN     I   +  L +L  LN+  + +     I+     +L  L     
Sbjct: 135 LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQ 191

Query: 917 NL 918
            +
Sbjct: 192 TI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
            +    L  LD+S +      ++  L  ++ L  +  +DLS N    + +  L  L  L+
Sbjct: 108 LSGLTSLTLLDISHSAH----DDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELK 162

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKI 172
           SL +  + +    D + ++    L +L      I
Sbjct: 163 SLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 32/262 (12%), Positives = 76/262 (29%), Gaps = 87/262 (33%)

Query: 784  NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 843
              K   + ++ ++       +   +++SL  + +++ N++           +    +   
Sbjct: 21   TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT----------DLT--GIE-- 63

Query: 844  MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 903
                           ++  L ++  +     P  I GLS L  L +   ++  +    L 
Sbjct: 64   ------------YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLS 109

Query: 904  RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 963
             L  L LLD+S +     I +  +                                    
Sbjct: 110  GLTSLTLLDISHSAHDDSILTKINT----------------------------------- 134

Query: 964  EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 1023
                              L  +  +DLS N  +  I P +  L  +++LN+  + +    
Sbjct: 135  ------------------LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYR 175

Query: 1024 PLTFSNLRHIESLDLSYNKLSG 1045
             +   +   +  L      + G
Sbjct: 176  GI--EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 30/190 (15%), Positives = 70/190 (36%), Gaps = 29/190 (15%)

Query: 734 IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 793
                  +  L            + ++ +SL  + L N N++      +     ++ + +
Sbjct: 16  NIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTI 73

Query: 794 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 853
              H     P+    L +L+ L I   +++         LS                   
Sbjct: 74  NNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIP---NLS------------------- 109

Query: 854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 913
               +SL  LD+S++  + SI   I+ L +++ ++L++N    ++   L  L +L+ L++
Sbjct: 110 --GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI 166

Query: 914 SDNNLHGLIP 923
             + +H    
Sbjct: 167 QFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 982  LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041
            LS L  L +    +     P +  LT +  L++SH+    +I    + L  + S+DLSYN
Sbjct: 87   LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 1042 KLSGKIPRQLVDLNTLAIFIVAYNNLS 1068
                 I   L  L  L    + ++ + 
Sbjct: 147  GAITDIM-PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 30/205 (14%), Positives = 62/205 (30%), Gaps = 47/205 (22%)

Query: 505 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTP 564
           S ++     + S+  + L+N +      L  +     +K     N       N    L+ 
Sbjct: 34  STANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT-NYNPISGLS- 88

Query: 565 KFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 624
              L+ L +                  ++   ++ +           L   T L  L + 
Sbjct: 89  --NLERLRIMGK---------------DVTSDKIPN-----------LSGLTSLTLLDIS 120

Query: 625 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALDG 679
           + +        I++  ++  +D+S N         I DI     LP L   NI  + +  
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNG-------AITDIMPLKTLPELKSLNIQFDGVHD 173

Query: 680 SIPSSFGNVIFLQFLDLSNNKLTGE 704
                  +   L  L   +  + G+
Sbjct: 174 Y--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 982  LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041
               +  L ++      +  P I  L+ ++ L +   ++T       S L  +  LD+S++
Sbjct: 65   AHNIKDLTINNIHA-TNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 1042 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 1071
                 I  ++  L  +    ++YN     I
Sbjct: 123  AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 982  LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041
            ++ L  + L+    V  +   I     I+ L +++ + T   P+  S L ++E L +   
Sbjct: 43   MNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMGK 98

Query: 1042 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073
             ++      L  L +L +  ++++     I  
Sbjct: 99   DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 87.6 bits (217), Expect = 2e-18
 Identities = 55/276 (19%), Positives = 89/276 (32%), Gaps = 20/276 (7%)

Query: 112 NLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDI-GGN 170
           N   L             + +    L  + +S N +   I+     +L  L E+ I   N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 171 KIDKF--MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL 228
            +        + L  L+ L +S TG K               +LD+  N   + +     
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 229 ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 288
             LS   +   L L  N     I +S    + L  L+LS N     +    F   S    
Sbjct: 150 VGLS--FESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 289 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNN-- 346
           LDI+   I ++  S G   L+KL++            K L ++    +L    L +    
Sbjct: 207 LDISRTRIHSLP-SYGLENLKKLRARSTY------NLKKLPTLEKLVALMEASL-TYPSH 258

Query: 347 ---FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQ 379
              F        ELH   N   L  +   +  +  Q
Sbjct: 259 CCAFANWRRQISELHPICNKSILRQEVDYMTQARGQ 294

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 83.0 bits (205), Expect = 6e-17
 Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 12/234 (5%)

Query: 691 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 749
              L     KL   I         +LE + +S N +   I + +FS L  L  + +E  +
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 750 FVGEIP-QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN-HLEGPIPVEFC 807
            +  I  ++     +L+ L ++N  +         +      + +  N ++       F 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 808 RL-DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866
            L     IL ++ N I     S F    + +++LS N    +L    F   S  V LD+S
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 867 YNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 919
              ++ S+P +  + L +L   +    NL+ ++P  L +L  L    L+    H
Sbjct: 211 RTRIH-SLPSYGLENLKKLRARST--YNLK-KLPT-LEKLVALMEASLT-YPSH 258

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 38/249 (15%), Positives = 78/249 (31%), Gaps = 23/249 (9%)

Query: 803  PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 862
                C   S ++    ++ ++  +PS   P +  ++      L   +++G F     L  
Sbjct: 3    HHRICHC-SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEK 58

Query: 863  LDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHG 920
            +++S N +   I   +   L +L  + +   N    +  +  + L  LQ L +S+  +  
Sbjct: 59   IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118

Query: 921  LIPSCFDN----TTLHESYNNN--SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 974
            L      +      L    N N  +     F       G         L        +  
Sbjct: 119  LPDVHKIHSLQKVLLDIQDNINIHTIERNSF------VGLSFESVILWLNKNGIQEIH-N 171

Query: 975  YAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 1033
             A+ G    L        N L   +P  +    +    L++S   +         NL+ +
Sbjct: 172  SAFNG--TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228

Query: 1034 ESLDLSYNK 1042
             +      K
Sbjct: 229  RARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 8e-10
 Identities = 48/278 (17%), Positives = 86/278 (30%), Gaps = 40/278 (14%)

Query: 208 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA--RLSSLTSLH 265
           +  V     +++    +P  L          +L          ++   A      L  + 
Sbjct: 10  SNRVFLCQESKVTE--IPSDL-----PRNAIELRFVLT--KLRVIQKGAFSGFGDLEKIE 60

Query: 266 LSHNILQGSIDAKEFDSLSNLEELDI-NDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDG 324
           +S N +   I+A  F +L  L E+ I   N +  +     ++ L  L+ L +S  GI+  
Sbjct: 61  ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNTGIKH- 118

Query: 325 NKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI 381
              L              L ++ N    T+     +        L L+ +   I  + + 
Sbjct: 119 ---LPD-VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN--GIQEIHN- 171

Query: 382 GSIFPSLKNLSMSGCEVNG--VLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPS 439
            S F   +   ++  + N    L    F        LD+   RI    S      E++  
Sbjct: 172 -SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI---HSLPSYGLENLKK 227

Query: 440 LKYLSLSG-STLGTNSSRILDQGLCPLAHLQELYIDNN 476
           L+  S      L T         L  L  L E  +   
Sbjct: 228 LRARSTYNLKKLPT---------LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 42/262 (16%), Positives = 77/262 (29%), Gaps = 47/262 (17%)

Query: 136 SLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGTG 193
           S R     ++++   I     D  R+  EL     K+         G   L+ + +S   
Sbjct: 10  SNRVFLCQESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 194 FKGTFDVREFDSFNNLEVLDMS-GNEIDNLVVPQGLERLSRLSKLKKLDLRGN------- 245
                +   F +   L  + +   N +  +           L  L+ L +          
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYI--NPEA--FQNLPNLQYLLISNTGIKHLPD 121

Query: 246 -------------LCNNSILSSVARLS------SLTSLHLSHNILQGSIDAKEFDSLSNL 286
                        + +N  + ++ R S          L L+ N +Q  I    F+     
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLD 180

Query: 287 EELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNN 346
           E    ++N ++ +  +  + G      LD+S   I      L S     +L  L   S  
Sbjct: 181 ELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIHS----LPS-YGLENLKKLRARSTY 234

Query: 347 FTATLTTTQELHNFTNLEYLTL 368
               L     L     L   +L
Sbjct: 235 ---NLKKLPTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 35/202 (17%), Positives = 66/202 (32%), Gaps = 44/202 (21%)

Query: 73  YLNASLFTPFQQLESLDLSWNNI-----AGCAENEGLEGLSRLNNLKMLDLSGNAFNNNV 127
           Y+N   F     L+ L +S   I          +     L   +N+ +  +  N+F    
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG-- 151

Query: 128 LSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSL 187
           LS          L+L+ N ++  I     +  +  E      N +++  +   +      
Sbjct: 152 LSFE-----SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEE--LPNDV------ 197

Query: 188 GLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLC 247
                          F   +   +LD+S   I +L  P     L  L KL+         
Sbjct: 198 ---------------FHGASGPVILDISRTRIHSL--PSYG--LENLKKLRARSTY---- 234

Query: 248 NNSILSSVARLSSLTSLHLSHN 269
           N   L ++ +L +L    L++ 
Sbjct: 235 NLKKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 37/288 (12%), Positives = 70/288 (24%), Gaps = 66/288 (22%)

Query: 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
            +  EL      LR       +    L  +++S N +   I +    +L  + E+R+   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 526 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 585
                         + L                  +      L+ L +S+          
Sbjct: 90  --------------NNLLYI------------NPEAFQNLPNLQYLLISNTG-------- 115

Query: 586 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV-NDSL----AGPFRLPIHSHK 640
                             I   P+    ++ +   L +  N ++       F        
Sbjct: 116 ------------------IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---GLSF 154

Query: 641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 700
               L ++ N  Q  I     +            N L+      F        LD+S  +
Sbjct: 155 ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 701 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 748
           +   +P +       L   S  N          +  L  L    L   
Sbjct: 214 IH-SLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 988  LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
                 +K+   IP  +        L      L       FS    +E +++S N +   I
Sbjct: 14   FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 1048 PRQ----LVDLNTLAIFIVAYNNLS 1068
                   L  L+ +   I   NNL 
Sbjct: 71   EADVFSNLPKLHEI--RIEKANNLL 93

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 62/328 (18%), Positives = 104/328 (31%), Gaps = 57/328 (17%)

Query: 83  QQLESLDLSWNNI--AGCAENEGL-EGLSRLNNLKMLDLSGNAFNN----------NVLS 129
             ++ + LS N I          L E ++   +L++ + S                 +L 
Sbjct: 32  DSVKEIVLSGNTIGTEAA---RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 130 SLARLSSLRSLYLSDNRLEGSIDVKE----LDSLRDLEELDIGGNKIDKF---MVSKGLS 182
           +L +   L ++ LSDN   G    +     L     LE L +  N +       +++ L 
Sbjct: 89  ALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 183 KLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDL 242
           +L     +                  L  +    N ++N  + +  +       L  + +
Sbjct: 148 ELAVNKKAKNA-------------PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194

Query: 243 RGNL-----CNNSILSSVARLSSLTSLHLSHNIL--QGSID-AKEFDSLSNLEELDINDN 294
             N        + +L  +A    L  L L  N     GS   A    S  NL EL +ND 
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

Query: 295 EIDN---VEVSRGYRGL--RKLKSLDLSGVGIRD--GNKLLQSMGS-FPSLNTLHLESNN 346
            +       V   +  L    L++L L    I       L   +    P L  L L  N 
Sbjct: 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314

Query: 347 FT---ATLTTTQE-LHNFTNLEYLTLDD 370
           F+     +   +E        E   LDD
Sbjct: 315 FSEEDDVVDEIREVFSTRGRGELDELDD 342

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 83.2 bits (206), Expect = 8e-17
 Identities = 54/313 (17%), Positives = 105/313 (33%), Gaps = 47/313 (15%)

Query: 260 SLTSLHLSHNILQGSIDAKEF----DSLSNLEELDINDNEIDNV---EVSRGYRGLRKLK 312
           S+    L  + +  + D K          +++E+ ++ N I       +S      + L+
Sbjct: 5   SIEGKSLKLDAI-TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 313 SLDLSGVGIRDGNK--------LLQSMGSFPSLNTLHLESNNFTAT--LTTTQELHNFTN 362
             + S +               LLQ++   P L+T+ L  N F  T        L   T 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 363 LEYLTLDD------------SSLHISLLQSIGSIFPSLKNLSMSGC--EVNGVLS-GQGF 407
           LE+L L +             +L    +       P L+++       E   +    + F
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 408 PHFKSLEHLDMRFARIALNTSFLQIIGE---SMPSLKYLSLSGSTLGTNSSRILDQGLCP 464
              + L  + M    I        ++ E       LK L L  +T     S  L   L  
Sbjct: 184 QSHRLLHTVKMVQNGIR-PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 465 LAHLQELYIDNNDLRGSLPWCLANT------TSLRILDVSFNQLTG----SISSSPLVHL 514
             +L+EL +++  L       + +         L+ L + +N++      ++ +     +
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 515 TSIEELRLSNNHF 527
             +  L L+ N F
Sbjct: 303 PDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 52/322 (16%), Positives = 97/322 (30%), Gaps = 51/322 (15%)

Query: 85  LESLDLSWNNIAGCAENEGL-EGLSRLNNLKMLDLSGNAFNNNVLSSLARL----SSLRS 139
           +E   L  + I    + + +   L   +++K + LSGN         L+        L  
Sbjct: 6   IEGKSLKLDAI-TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 140 LYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFD 199
              SD    G +  +  ++LR L +                  KL ++ LS   F G   
Sbjct: 65  AEFSDIFT-GRVKDEIPEALRLLLQ------------ALLKCPKLHTVRLSDNAF-GPTA 110

Query: 200 VREFDSF----NNLEVLDMSGNEI---------DNLVVPQGLERLSRLSKLKKLDLRGNL 246
                 F      LE L +  N +           L      ++      L+ +    N 
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 247 CNN----SILSSVARLSSLTSLHLSHNILQ----GSIDAKEFDSLSNLEELDINDNEIDN 298
             N        +      L ++ +  N ++      +  +       L+ LD+ DN   +
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

Query: 299 ---VEVSRGYRGLRKLKSLDLSGVGIRD-GNKLLQSM---GSFPSLNTLHLESNNFT--- 348
                ++   +    L+ L L+   +   G   +           L TL L+ N      
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290

Query: 349 ATLTTTQELHNFTNLEYLTLDD 370
                T       +L +L L+ 
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNG 312

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 56/305 (18%), Positives = 102/305 (33%), Gaps = 61/305 (20%)

Query: 83  QQLESLDLSWNNIAGCAENEGLEG-------LSRLNNLKMLDLSGNAFNNNVLSSLARL- 134
           + LE  + S     G  ++E  E        L +   L  + LS NAF       L    
Sbjct: 60  KDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 135 ---SSLRSLYLSDNR------------LEGSIDVKELDSLRDLEELDIGGNKIDKFMVSK 179
              + L  LYL +N             L+     K+  +   L  +  G N+++    + 
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE----NG 174

Query: 180 GLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL-ERLSRLSKLK 238
            + +          F+         S   L  + M  N I    +   L E L+   +LK
Sbjct: 175 SMKEW------AKTFQ---------SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219

Query: 239 KLDLRGNLCNN----SILSSVARLSSLTSLHLSHNILQGS-----IDAKEFDSLSNLEEL 289
            LDL+ N   +    ++  ++    +L  L L+  +L        +DA        L+ L
Sbjct: 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279

Query: 290 DINDNEIDNVEVSRGYRGLR----KLKSLDLSGVGIRDG----NKLLQSMGSFPSLNTLH 341
            +  NEI+   V      +      L  L+L+G    +     +++ +   +        
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339

Query: 342 LESNN 346
           L+   
Sbjct: 340 LDDME 344

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.0 bits (151), Expect = 5e-10
 Identities = 49/269 (18%), Positives = 85/269 (31%), Gaps = 57/269 (21%)

Query: 691 LQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLK----------GHIFSRIFS 736
           ++ + LS N +  E    + +++A    +LE    S+                +   +  
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 737 LRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 792
              L  + L  N F       +   LSK + L+ LYL+NN L  +    +   + LQ + 
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--RALQELA 150

Query: 793 MPKNHLEGPIPVEFCRLDSLQILDISDNNI--------SGSLPSCFYPLSIKQVHLSKNM 844
           + K     P          L+ +    N +        + +  S      +  V + +N 
Sbjct: 151 VNKKAKNAP---------PLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNG 198

Query: 845 LHGQ-----LKEGTFFNCSSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLNLAHNNLE 895
           +  +     L EG    C  L  LDL  N        ++   +     L  L L    L 
Sbjct: 199 IRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 896 GE------VPIQLCRLNQLQLLDLSDNNL 918
                             LQ L L  N +
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 61/359 (16%), Positives = 118/359 (32%), Gaps = 93/359 (25%)

Query: 612 LENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 667
           L  +  ++ + L  +++    A      I S K L   + S+  F G +  EI + L  L
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLL 86

Query: 668 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSLSNN 724
           +               +      L  + LS+N       + L         LE L L NN
Sbjct: 87  L--------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132

Query: 725 SL-------------KGHIFSRIFSLRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGL 767
            L             +  +  +  +   LR ++   N      + E  ++      L  +
Sbjct: 133 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192

Query: 768 YLNNNNLSGK-IPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI---- 822
            +  N +  + I   L   +GL +                     L++LD+ DN      
Sbjct: 193 KMVQNGIRPEGIEHLLL--EGLAY------------------CQELKVLDLQDNTFTHLG 232

Query: 823 ----SGSLPSCFYPLSIKQVHLSKNMLHGQ--------LKEGTFFNCSSLVTLDLSYNYL 870
               + +L S     +++++ L+  +L  +          +        L TL L YN +
Sbjct: 233 SSALAIALKSW---PNLRELGLNDCLLSARGAAAVVDAFSKLEN---IGLQTLRLQYNEI 286

Query: 871 NG----SIPDWI-DGLSQLSHLNLAHNNL--EGEVPIQLCRL----NQLQLLDLSDNNL 918
                 ++   I + +  L  L L  N    E +V  ++  +     + +L +L D   
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 34/159 (21%)

Query: 76  ASLFTPFQQLESLDLSWNNI--AGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133
           A  F   + L ++ +  N I   G       EGL+    LK+LDL  N F +   S+LA 
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 134 ----LSSLRSLYLSDNRLEGSIDVKEL-DSLRD-----LEELDIGGNKIDKFMVSKGLSK 183
                 +LR L L+D  L  +     + D+        L+ L +  N+I+       +  
Sbjct: 239 ALKSWPNLRELGLNDCLL-SARGAAAVVDAFSKLENIGLQTLRLQYNEIE----LDAVRT 293

Query: 184 L-KSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDN 221
           L   +                    +L  L+++GN    
Sbjct: 294 LKTVIDEKMP---------------DLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.6 bits (137), Expect = 3e-08
 Identities = 61/392 (15%), Positives = 114/392 (29%), Gaps = 119/392 (30%)

Query: 691  LQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSLSNNSLK-------GHIFSRIFSLRNL 740
            ++   L  + +T E    +        +++ + LS N++            +    L   
Sbjct: 6    IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 741  RWLLLEGNHFVGEIP-------QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 793
             +  +       EIP       Q+L KC  L  + L++N                + ++ 
Sbjct: 66   EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---------PTAQEPLI- 115

Query: 794  PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 853
              + L             L+ L + +N +    P     ++          L        
Sbjct: 116  --DFLSKHT--------PLEHLYLHNNGLG---PQAGAKIA--------RALQELAVNKK 154

Query: 854  FFNCSSLVTLDLSYNYL-NGSIPDWIDGLSQ---LSHLNLAHNNLEGE-VPIQLCRL--- 905
              N   L ++    N L NGS+ +W         L  + +  N +  E +   L      
Sbjct: 155  AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 906  -NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 964
              +L++LDL DN                                       GS       
Sbjct: 215  CQELKVLDLQDNTF----------------------------------THLGS------- 233

Query: 965  IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL-------VGHIPPQIGNLTRIQTLNLSHN 1017
                    +A A   +    L  L L+   L       V     ++ N+  +QTL L +N
Sbjct: 234  ------SALAIAL--KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYN 284

Query: 1018 NLT--GTIPLTFS---NLRHIESLDLSYNKLS 1044
             +       L       +  +  L+L+ N+ S
Sbjct: 285  EIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 5e-08
 Identities = 63/380 (16%), Positives = 117/380 (30%), Gaps = 106/380 (27%)

Query: 486 LANTTSLRILDVSFNQLTG---SISSSPLVHLTSIEELRLSNNHFRIPVSL---EPLFNH 539
           +A   S+    +  + +T        + L+   S++E+ LS N      +    E + + 
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 540 SKLKIFDAKNNEINGEINE--------SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQH 591
             L+I +  +       +E          +L    +L ++ LS N               
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA--------- 110

Query: 592 ELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL-------------AGPFRLPIHS 638
                     + + +F    L  +T LE LYL N+ L                      +
Sbjct: 111 ---------QEPLIDF----LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKN 157

Query: 639 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 698
              LR +    N  +                 N SM         +F +   L  + +  
Sbjct: 158 APPLRSIICGRNRLE-----------------NGSMKEWA----KTFQSHRLLHTVKMVQ 196

Query: 699 NKLTGE-----IPDHLAMCCVNLEFLSLSNNSL--KG--HIFSRIFSLRNLRWLLLEGNH 749
           N +  E     + + LA C   L+ L L +N+    G   +   + S  NLR L L    
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

Query: 750 F----VGEIPQSLSKCS--SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 803
                   +  + SK     L+ L L  N +             ++ +      ++  +P
Sbjct: 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD---------AVRTLK---TVIDEKMP 303

Query: 804 VEFCRLDSLQILDISDNNIS 823
                   L  L+++ N  S
Sbjct: 304 -------DLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 52/276 (18%)

Query: 331 MGSFPSLNTLHLESNNFTATLTTT--QELHNFTNLEYLTLDDSSLHISLLQSIGSIF--- 385
           M  F S+    L+ +  T     +    L    +++ + L  +++     + +       
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 386 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM---PSLKY 442
             L+    S      V                            L+++ +++   P L  
Sbjct: 60  KDLEIAEFSDIFTGRVKD---------------------EIPEALRLLLQALLKCPKLHT 98

Query: 443 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL-------------RGSLPWCLANT 489
           + LS +  G  +   L   L     L+ LY+ NN L               ++     N 
Sbjct: 99  VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA 158

Query: 490 TSLRILDVSFNQLT--GSIS-SSPLVHLTSIEELRLSNNHFR----IPVSLEPLFNHSKL 542
             LR +    N+L        +        +  +++  N  R      + LE L    +L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 543 KIFDAKNNEI--NGEINESHSLTPKFQLKSLSLSSN 576
           K+ D ++N     G    + +L     L+ L L+  
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 47/229 (20%)

Query: 734 IFSLRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYLNNNNLSGK----IPRWLGNL 785
            FS+       L+ +         +   L +  S+K + L+ N +  +    +   + + 
Sbjct: 3   RFSIEGKS---LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 786 KGLQHIVMPKNHL-----EGPIPVE-----FCRLDSLQILDISDNNISGSLPSCFYPL-- 833
           K L+              E P  +        +   L  + +SDN    +          
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 834 ---SIKQVHLSKN------------MLHGQLKEGTFFNCSSLVTLDLSYNYL-NGSIPDW 877
               ++ ++L  N             L          N   L ++    N L NGS+ +W
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 878 IDGLSQ---LSHLNLAHNNLEGE-VPIQLCRL----NQLQLLDLSDNNL 918
                    L  + +  N +  E +   L        +L++LDL DN  
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 19/190 (10%)

Query: 112 NLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNK 171
           + K LDL  N  ++    +  RL+ LR LYL+DN+L+ ++       L++LE L +  NK
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 172 IDKF--MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 229
           +      V   L  L  L L     K +   R FDS   L  L +  NE+ +L  P+G+ 
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL--PKGV- 152

Query: 230 RLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHNILQGSIDAKEFDSLS 284
              +L+ LK+L L  N      L  V      +L+ L +L L +N L+  +    FDSL 
Sbjct: 153 -FDKLTSLKELRLYNNQ-----LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLE 205

Query: 285 NLEELDINDN 294
            L+ L + +N
Sbjct: 206 KLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 36/199 (18%)

Query: 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSS 260
             + + LD+  N++ +L  P       RL+KL+ L L  N      L ++       L +
Sbjct: 36  PADTKKLDLQSNKLSSL--PSKA--FHRLTKLRLLYLNDNK-----LQTLPAGIFKELKN 86

Query: 261 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 320
           L +L ++ N LQ ++    FD L NL EL ++ N++ ++   R +  L KL  L L    
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLG--- 141

Query: 321 IRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI 375
               N+ LQS+  G F    SL  L L +N               T L+ L LD++    
Sbjct: 142 ---YNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA--FDKLTELKTLKLDNNQ--- 192

Query: 376 SLLQSI-GSIFPSLKNLSM 393
             L+ +    F SL+ L M
Sbjct: 193 --LKRVPEGAFDSLEKLKM 209

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 762 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDN 820
           +  K L L +N LS    +    L  L+ + +  N L+  +P   F  L +L+ L ++DN
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95

Query: 821 NISGSLPSCF--YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 878
            +  +LP       +++ ++ L +N L   L    F + + L  L L YN L  S+P  +
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152

Query: 879 -DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 930
            D L+ L  L L +N L+        +L +L+ L L +N L  +    FD+  
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 60/221 (27%), Positives = 89/221 (40%), Gaps = 49/221 (22%)

Query: 681 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRN 739
           IP+        + LDL +NKL+  +P         L  L L++N L+  + + IF  L+N
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 740 LRWLLLEGNHFVGEIPQSL-----SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794
           L  L +  N       Q+L      +  +L  L L+ N L   +P  +            
Sbjct: 87  LETLWVTDNKL-----QALPIGVFDQLVNLAELRLDRNQLK-SLPPRV------------ 128

Query: 795 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEG 852
                      F  L  L  L +  N +  SLP   F  L S+K++ L  N L  ++ EG
Sbjct: 129 -----------FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEG 175

Query: 853 TFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHN 892
            F   + L TL L  N L   +P+   D L +L  L L  N
Sbjct: 176 AFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 22/192 (11%)

Query: 663 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFL 719
           I       ++  N L      +F  +  L+ L L++NKL      I   L     NLE L
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL----KNLETL 90

Query: 720 SLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNN 773
            +++N L+  +   +F  L NL  L L+ N       +SL        + L  L L  N 
Sbjct: 91  WVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNE 144

Query: 774 LSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 832
           L   +P+ +   L  L+ + +  N L+      F +L  L+ L + +N +       F  
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 833 L-SIKQVHLSKN 843
           L  +K + L +N
Sbjct: 204 LEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 53/238 (22%), Positives = 79/238 (33%), Gaps = 61/238 (25%)

Query: 832  PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 890
            P   K++ L  N L   L    F   + L  L L+ N L  ++P  I   L  L  L + 
Sbjct: 36   PADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 891  HNNLEGEVPIQL-CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF 949
             N L+  +PI +  +L  L  L L  N L  L P  FD+                     
Sbjct: 94   DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------------------- 131

Query: 950  SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTR 1008
                                            L+ L  L L  N+L   +P  +   LT 
Sbjct: 132  --------------------------------LTKLTYLSLGYNELQ-SLPKGVFDKLTS 158

Query: 1009 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 1066
            ++ L L +N L       F  L  +++L L  N+L  ++P    D       +    N
Sbjct: 159  LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 56/243 (23%), Positives = 87/243 (35%), Gaps = 67/243 (27%)

Query: 858  SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDN 916
            +    LDL  N L+         L++L  L L  N L+  +P  +   L  L+ L ++DN
Sbjct: 37   ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 917  NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 976
             L  L    FD                                                 
Sbjct: 96   KLQALPIGVFDQ------------------------------------------------ 107

Query: 977  YQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIE 1034
                 L  LA L L  N+L   +PP++  +LT++  L+L +N L  ++P   F  L  ++
Sbjct: 108  -----LVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160

Query: 1035 SLDLSYNKLSGKIPRQLVD-LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNP 1090
             L L  N+L  ++P    D L  L    +  N L  ++PE    F +  K        NP
Sbjct: 161  ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGA--FDSLEKLKMLQLQENP 216

Query: 1091 FLC 1093
            + C
Sbjct: 217  WDC 219

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 66/240 (27%)

Query: 490 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 549
              + LD+  N+L+ S+ S     LT +  L L++N  +   +L          IF    
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPA-------GIFK--- 82

Query: 550 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 609
                       L     L++L ++ N                        ++ +   P 
Sbjct: 83  -----------ELK---NLETLWVTDN-----------------------KLQAL---PI 102

Query: 610 WLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP 665
            + +    L  L L  + L       F     S  +L +L +  N  Q  +P  + D L 
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVF----DSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 666 SLVYFNISMNALDGSIPSS-FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 724
           SL    +  N L   +P   F  +  L+ L L NN+L   +P+        L+ L L  N
Sbjct: 158 SLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 54/247 (21%), Positives = 88/247 (35%), Gaps = 73/247 (29%)

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
           +    L L  N L  S+ +K F  L+ L  L +NDN++  +     ++ L+ L++L ++ 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAG-IFKELKNLETLWVT- 93

Query: 319 VGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL 373
                 +  LQ++  G F    +L  L L+ N   +         + T L YL+L  + L
Sbjct: 94  ------DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYNEL 145

Query: 374 HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQII 433
                QS+    P             GV        F  L                    
Sbjct: 146 -----QSL----P------------KGV--------FDKL-------------------- 156

Query: 434 GESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 493
                SLK L L  + L        D+    L  L+ L +DNN L+        +   L+
Sbjct: 157 ----TSLKELRLYNNQLKRVPEGAFDK----LTELKTLKLDNNQLKRVPEGAFDSLEKLK 208

Query: 494 ILDVSFN 500
           +L +  N
Sbjct: 209 MLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 50/236 (21%), Positives = 80/236 (33%), Gaps = 81/236 (34%)

Query: 465 LAHLQELYIDNNDLRGSLP-WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 523
           L  L+ LY+++N L+ +LP        +L  L V+ N+L  ++       L ++ ELRL 
Sbjct: 60  LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 524 NNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 583
            N  +   SL P       ++FD              SLT   +L  LSL  N       
Sbjct: 118 RNQLK---SLPP-------RVFD--------------SLT---KLTYLSLGYN------- 143

Query: 584 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 643
                            ++ +   P  + +  T L+ L L                    
Sbjct: 144 ----------------ELQSL---PKGVFDKLTSLKELRL-------------------- 164

Query: 644 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 699
                NN  +  +P    D L  L    +  N L      +F ++  L+ L L  N
Sbjct: 165 ----YNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 25/129 (19%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEG--LSRLNNLKMLDLSGNAFNNNVLSSL 131
           L   +F     L  L L  N +      + L       L  L  L L  N      L SL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQL------KSLPPRVFDSLTKLTYLSLGYNE-----LQSL 148

Query: 132 -----ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKG----LS 182
                 +L+SL+ L L +N+L+  +     D L +L+ L +  N++    V +G    L 
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK--RVPEGAFDSLE 205

Query: 183 KLKSLGLSG 191
           KLK L L  
Sbjct: 206 KLKMLQLQE 214

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 79.8 bits (197), Expect = 3e-16
 Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 44/212 (20%)

Query: 112 NLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNK 171
           +  +L LS N      L++L   + L  L L    L   + V    +L  L  LD+  N 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN- 87

Query: 172 IDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERL 231
                      +L+SL L               +   L VLD+S N + +L  P G   L
Sbjct: 88  -----------QLQSLPLL------------GQTLPALTVLDVSFNRLTSL--PLGA--L 120

Query: 232 SRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNL 286
             L +L++L L+GN      L ++          L  L L++N L   + A   + L NL
Sbjct: 121 RGLGELQELYLKGNE-----LKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENL 174

Query: 287 EELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
           + L + +N +    + +G+ G   L    L G
Sbjct: 175 DTLLLQENSLYT--IPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 18/187 (9%)

Query: 616 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 675
                L+L  + L       +  + RL  L++        + V     LP L   ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN 87

Query: 676 ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIF 731
            L  S+P     +  L  LD+S N+LT  +P      L      L+ L L  N LK  + 
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGL----GELQELYLKGNELK-TLP 140

Query: 732 SRIF-SLRNLRWLLLEGNHFVGEIPQSL-SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 789
             +      L  L L  N+   E+P  L +   +L  L L  N+L   IP+       L 
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLP 198

Query: 790 HIVMPKN 796
              +  N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 49/213 (23%), Positives = 75/213 (35%), Gaps = 16/213 (7%)

Query: 684 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRW 742
               V     ++     LT  +P  L     +   L LS N L              L  
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLY-TFSLATLMPYTRLTQ 59

Query: 743 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 802
           L L+    + ++         L  L L++N L   +P     L  L  + +  N L   +
Sbjct: 60  LNLDRAE-LTKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-L 115

Query: 803 PVE-FCRLDSLQILDISDNNISGSLPS-CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSS 859
           P+     L  LQ L +  N +  +LP     P   ++++ L+ N L  +L  G      +
Sbjct: 116 PLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLEN 173

Query: 860 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 892
           L TL L  N L  +IP    G   L    L  N
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.4 bits (178), Expect = 8e-14
 Identities = 51/204 (25%), Positives = 75/204 (36%), Gaps = 52/204 (25%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSL-- 131
            + +   P+ +L  L+L    +        L+    L  L  LDLS N      L SL  
Sbjct: 46  FSLATLMPYTRLTQLNLDRAELT------KLQVDGTLPVLGTLDLSHNQ-----LQSLPL 94

Query: 132 --ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGL 189
               L +L  L +S NRL  S+ +  L  L +L+EL + GN            +LK+L  
Sbjct: 95  LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN------------ELKTL-- 139

Query: 190 SGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNN 249
                              LE L ++ N +  L  P GL  L+ L  L  L L+ N    
Sbjct: 140 ---------PPGLLTPTPKLEKLSLANNNLTEL--PAGL--LNGLENLDTLLLQENS--- 183

Query: 250 SILSSVAR----LSSLTSLHLSHN 269
             L ++ +       L    L  N
Sbjct: 184 --LYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 48/222 (21%), Positives = 80/222 (36%), Gaps = 32/222 (14%)

Query: 335 PSLNTLHLESNNFTA----TLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 390
            S   ++ +  N TA        T  LH   N            +       +       
Sbjct: 10  ASHLEVNCDKRNLTALPPDLPKDTTILHLSEN-----------LLYTFSL--ATLMPYTR 56

Query: 391 LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 450
           L+    +   +   Q       L  LD+   ++      L ++G+++P+L  L +S + L
Sbjct: 57  LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL----QSLPLLGQTLPALTVLDVSFNRL 112

Query: 451 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP-WCLANTTSLRILDVSFNQLTGSISSS 509
            +     L      L  LQELY+  N+L+ +LP   L  T  L  L ++ N LT  + + 
Sbjct: 113 TSLPLGALRG----LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166

Query: 510 PLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNN 550
            L  L +++ L L  N    IP   +  F    L       N
Sbjct: 167 LLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 20/190 (10%)

Query: 662 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP--DHLAMCCVNLEFL 719
           D+       ++S N L     ++      L  L+L   +LT ++     L      L  L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTL----PVLGTL 82

Query: 720 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNL 774
            LS+N L+  +     +L  L  L +  N        SL          L+ LYL  N L
Sbjct: 83  DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-----TSLPLGALRGLGELQELYLKGNEL 136

Query: 775 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPL 833
               P  L     L+ + +  N+L   +P      L++L  L + +N++       F   
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH 195

Query: 834 SIKQVHLSKN 843
            +    L  N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 52/216 (24%), Positives = 79/216 (36%), Gaps = 48/216 (22%)

Query: 858  SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 917
                 L LS N L       +   ++L+ LNL    L  ++ +    L  L  LDLS N 
Sbjct: 31   KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQ 88

Query: 918  LHGLIPSCFDN----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 972
            L  L P         T L  S+N  +S P                               
Sbjct: 89   LQSL-PLLGQTLPALTVLDVSFNRLTSLPLGAL--------------------------- 120

Query: 973  IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNL 1030
                   R L  L  L L  N+L   +PP +     +++ L+L++NNLT  +P    + L
Sbjct: 121  -------RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171

Query: 1031 RHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 1066
             ++++L L  N L   IP+     + L  F   + N
Sbjct: 172  ENLDTLLLQENSLYT-IPKGFFGSHLLP-FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 811 SLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKE-GTFFNCSSLVTLDLSYN 868
              IL +S+N +     +   P + + Q++L +     +L +         L TLDLS+N
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA----ELTKLQVDGTLPVLGTLDLSHN 87

Query: 869 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928
            L  S+P     L  L+ L+++ N L       L  L +LQ L L  N L  L P     
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 929 TT 930
           T 
Sbjct: 147 TP 148

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 44/213 (20%), Positives = 70/213 (32%), Gaps = 51/213 (23%)

Query: 855  FNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 913
             +   S + ++     L  ++P  +      + L+L+ N L       L    +L  L+L
Sbjct: 6    VSKVASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 914  SDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 969
                L  L            TL  S+N   S                             
Sbjct: 63   DRAELTKL--QVDGTLPVLGTLDLSHNQLQS----------------------------- 91

Query: 970  TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFS 1028
               +    Q   L  L  LD+S N+L   +P      L  +Q L L  N L    P   +
Sbjct: 92   ---LPLLGQT--LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 1029 NLRHIESLDLSYNKLSGKIP----RQLVDLNTL 1057
                +E L L+ N L+ ++P      L +L+TL
Sbjct: 146  PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 49/239 (20%), Positives = 74/239 (30%), Gaps = 69/239 (28%)

Query: 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
                L++  N L       L   T L  L++   +LT          L  +  L LS+N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87

Query: 526 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 585
             +   SL  L                        +L     L  L +S N         
Sbjct: 88  QLQ---SLPLLG----------------------QTLP---ALTVLDVSFN--------- 110

Query: 586 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL----AGPF-RLPIHSHK 640
                       L+ +      P   L    +L+ LYL  + L     G     P     
Sbjct: 111 -----------RLTSL------PLGALRGLGELQELYLKGNELKTLPPGLLTPTP----- 148

Query: 641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 699
           +L  L ++NNN    +P  + + L +L    +  N+L  +IP  F     L F  L  N
Sbjct: 149 KLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 46/248 (18%), Positives = 79/248 (31%), Gaps = 67/248 (27%)

Query: 247 CNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 304
           C+   L+++        T LHLS N+L  +         + L +L+++  E+  ++V   
Sbjct: 17  CDKRNLTALPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV--- 72

Query: 305 YRGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNFT 361
              L  L +LDLS       N+L          P+L  L +  N  T+       L    
Sbjct: 73  DGTLPVLGTLDLS------HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLG 124

Query: 362 NLEYLTLDDSSLHISLLQSI-GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 420
            L+ L L  +      L+++   +                            LE L    
Sbjct: 125 ELQELYLKGNE-----LKTLPPGLLTPTPK----------------------LEKLS--- 154

Query: 421 ARIALNTSFLQIIGE----SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 476
               L  + L  +       + +L  L L       NS   + +G      L   ++  N
Sbjct: 155 ----LANNNLTELPAGLLNGLENLDTLLLQ-----ENSLYTIPKGFFGSHLLPFAFLHGN 205

Query: 477 DLRGSLPW 484
                 PW
Sbjct: 206 ------PW 207

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 58/333 (17%), Positives = 121/333 (36%), Gaps = 57/333 (17%)

Query: 83  QQLESLDLSWNNIAGCAENEGLEGLSRL-----NNLKMLDLSGNAFNNNVLSSLARL--- 134
             + SLDLS NN+     +     L +       ++  L+LSGN+        L ++   
Sbjct: 22  HGVTSLDLSLNNL----YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 135 --SSLRSLYLSDNRLEGSIDVKEL-----DSLRDLEELDIGGNKIDKFMV---SKGL--- 181
             +++ SL LS N L       EL          +  LD+G N           +     
Sbjct: 78  IPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 182 -SKLKSLGLSGTGF--KGTFDVREFDSFNN--LEVLDMSGNEIDNLVVPQGLERLSRL-- 234
            + + SL L G     K + ++ +  +     +  L++ GN + +    +    L++   
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS----KNCAELAKFLA 192

Query: 235 ---SKLKKLDLRGNLCNNSILSSVARL-----SSLTSLHLSHNILQGSID---AKEFDSL 283
              + +  LDL  NL      + +A +     + + SL+L  N L G          DSL
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 284 SNLEELDINDNEIDNV------EVSRGYRGLRKLKSLDLSGVGIRD-GNKLLQSMGSFP- 335
            +L+ + ++ + + N+       +   +  ++K+  +D +G  I    +  + ++     
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELS 312

Query: 336 -SLNTLHLESNNFTATLTTTQELHNFTNLEYLT 367
              +   L +            + +    + L 
Sbjct: 313 GKADVPSLLNQCLIFAQKHQTNIEDLNIPDELR 345

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 53/303 (17%), Positives = 100/303 (33%), Gaps = 63/303 (20%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRL-----NNLKMLDLSGNAFNNNV 127
            L   L      + SL+LS N +      +  + L +        + +LDL  N F++  
Sbjct: 70  ELVQILAAIPANVTSLNLSGNFL----SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125

Query: 128 LSSLARL-----SSLRSLYLSDNRLEGSIDVKEL-DSLRD----LEELDIGGNKIDKFMV 177
            S   +      +S+ SL L  N L G     EL   L      +  L++ GN +     
Sbjct: 126 SSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAAIPANVNSLNLRGNNLA---- 180

Query: 178 SKGLSKLKSLGLSGTGFKGTFDVREFDSFN-NLEVLDMSGNEIDNLVVPQGLERLSRL-- 234
           SK  ++L                    S   ++  LD+S N +      +    L+ +  
Sbjct: 181 SKNCAELAKF---------------LASIPASVTSLDLSANLLGL----KSYAELAYIFS 221

Query: 235 ---SKLKKLDLRGN----LCNNSILSSVARLSSLTSLHLSHNILQGSID------AKEFD 281
              + +  L+L  N        ++      L  L +++L ++I++             F 
Sbjct: 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281

Query: 282 SLSNLEELDINDNEIDNVEVSRGYRGLR----KLKSLDLSGVGIRDGNKLLQSMGSFPSL 337
           ++  +  +D N  EI           +R    K     L    +    K   ++      
Sbjct: 282 NIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341

Query: 338 NTL 340
           + L
Sbjct: 342 DEL 344

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 71.3 bits (175), Expect = 4e-13
 Identities = 54/287 (18%), Positives = 113/287 (39%), Gaps = 50/287 (17%)

Query: 105 EGLSRLNNLKMLDLSGNAFNNNVLSSLARL-----SSLRSLYLSDNRLEGSIDVKELDSL 159
           E  S  + +  LDLS N   +     L +      +S+ SL LS N L G  +  EL  +
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQI 74

Query: 160 -----RDLEELDIGGNKIDKFMV---SKGL----SKLKSLGLSGTGF--KGTFDVREFDS 205
                 ++  L++ GN +         K L      +  L L    F  K + + ++  S
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 206 FNN--LEVLDMSGNEIDNLVVPQGLERLSRL-----SKLKKLDLRGNLCNNSILSSVARL 258
                +  L++ GN++      +  + L ++     + +  L+LRGN   +   + +A+ 
Sbjct: 135 NLPASITSLNLRGNDLGI----KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF 190

Query: 259 -----SSLTSLHLSHNILQGSIDAKEFDSL-----SNLEELDINDNEIDNV---EVSRGY 305
                +S+TSL LS N+L G     E   +     +++  L++  N +       +    
Sbjct: 191 LASIPASVTSLDLSANLL-GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249

Query: 306 RGLRKLKSLDLSGVGIRD-GNKLLQSMGSF----PSLNTLHLESNNF 347
             L+ L+++ L    +++   +  +++G+       +  +       
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 67.4 bits (165), Expect = 7e-12
 Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 51/251 (20%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGL----EGLSRLN-NLKMLDLSGNAFNNNV 127
               +       + SL+L  N++      +      + L+ +  N+  L+L GN   +  
Sbjct: 128 EFKQAFSNLPASITSLNLRGNDL----GIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183

Query: 128 LSSLARL-----SSLRSLYLSDNRLEGSIDVKELDSL-----RDLEELDIGGNKIDKFMV 177
            + LA+      +S+ SL LS N L G     EL  +       +  L++  N +     
Sbjct: 184 CAELAKFLASIPASVTSLDLSANLL-GLKSYAELAYIFSSIPNHVVSLNLCLNCLH---- 238

Query: 178 SKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQG---LERLSRL 234
              L  LK L                DS  +L+ + +  + + N+   Q          +
Sbjct: 239 GPSLENLKLL---------------KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283

Query: 235 SKLKKLDLRGNLCNNSILSSVARL-----SSLTSLHLSHN----ILQGSIDAKEFDSLSN 285
            K+  +D  G   + S    ++ L            L +       +   + ++ +    
Sbjct: 284 QKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDE 343

Query: 286 LEELDINDNEI 296
           L E       +
Sbjct: 344 LRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 55/305 (18%), Positives = 111/305 (36%), Gaps = 41/305 (13%)

Query: 259 SSLTSLHLSHNILQGSIDAKEF-----DSLSNLEELDINDNEIDNVEVSRGYRGLRK--- 310
             +TSL LS N L  SI   E      ++ +++  L+++ N +         + L     
Sbjct: 22  HGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 311 -LKSLDLSGVGIRD-GNKLLQSMGSFP--SLNTLHLESNNFTATLTTTQEL-----HNFT 361
            + SL+LSG  +    +  L    +    ++  L L  N+F++   ++ E      +   
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK--SSSEFKQAFSNLPA 138

Query: 362 NLEYLTLDDSSLH----ISLLQSIGSIFPSLKNLSMSGCEV--NGVLS-GQGFPHF-KSL 413
           ++  L L  + L       L+Q + +I  ++ +L++ G  +         +       S+
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 414 EHLDMRFARIALN--TSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQEL 471
             LD+    + L        I       +  L+L  + L   S   L      L HLQ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 472 YIDNNDLRGSLPWC-------LANTTSLRILDVSFNQLTGS----ISSSPLVHLTSIEEL 520
           Y+D + ++               N   + ++D +  ++  S    IS+         +  
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 521 RLSNN 525
            L N 
Sbjct: 319 SLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 49/276 (17%)

Query: 691 LQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL-----RNLR 741
           +  LDLS N L       +    A    ++  L+LS NSL       +  +      N+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 742 WLLLEGNHF----VGEIPQSLSKC-SSLKGLYLNNNNLSGKIPRWLGNL-----KGLQHI 791
            L L GN        E+ ++L+    ++  L L  N+ S K               +  +
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 792 VMPKNHLEGPIPVEFCRL-----DSLQILDISDNNI--------SGSLPSCFYPLSIKQV 838
            +  N L      E  ++      ++  L++  NN+        +  L S   P S+  +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI--PASVTSL 201

Query: 839 HLSKNMLHGQ----LKEGTFFNCSSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLA 890
            LS N+L  +    L        + +V+L+L  N L+G     +    D L  L  + L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 891 HNNLEGEVPIQ-------LCRLNQLQLLDLSDNNLH 919
           ++ ++     Q          + ++ L+D +   +H
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 54/329 (16%), Positives = 110/329 (33%), Gaps = 91/329 (27%)

Query: 758  LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 817
             S    +  L L+ NNL       L   +   +                    S+  L++
Sbjct: 18   TSIPHGVTSLDLSLNNLYSISTVELI--QAFANTPA-----------------SVTSLNL 58

Query: 818  SDNNISGS--------LPSCFYPLSIKQVHLSKNMLHGQ----LKEGTFFNCSSLVTLDL 865
            S N++           L +   P ++  ++LS N L  +    L +       ++  LDL
Sbjct: 59   SGNSLGFKNSDELVQILAAI--PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 866  SYNYL-NGSIPDWIDGL----SQLSHLNLAHNNLEGEVPIQLCRL-----NQLQLLDLSD 915
             +N   + S  ++        + ++ LNL  N+L  +   +L ++       +  L+L  
Sbjct: 117  GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 916  NNL---------HGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIF 966
            NNL           L       T+L  S N              + G +     ++  IF
Sbjct: 177  NNLASKNCAELAKFLASIPASVTSLDLSANL-------------L-GLKSY--AELAYIF 220

Query: 967  EFTTKNIAYAYQGRVLSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNLSHNNLTGT 1022
                 +            +  L+L  N L    + ++     +L  +QT+ L ++ +   
Sbjct: 221  SSIPNH------------VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268

Query: 1023 -------IPLTFSNLRHIESLDLSYNKLS 1044
                   +   F N++ I  +D +  ++ 
Sbjct: 269  SKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 50/302 (16%), Positives = 94/302 (31%), Gaps = 64/302 (21%)

Query: 611 LLENNTKLEFLYLVN--------DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 662
                  +  L L            L   F    ++   +  L++S N+       E+  
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFA---NTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 663 ILPS----LVYFNISMNALDGSIPSSFGNVIF-----LQFLDLSNNKLTGE----IPDHL 709
           IL +    +   N+S N L           +      +  LDL  N  + +         
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 710 AMCCVNLEFLSLSNNSLK---GHIFSRIFSLRN--LRWLLLEGNHF----VGEIPQSL-S 759
           +    ++  L+L  N L         +I +     +  L L GN+       E+ + L S
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 760 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 819
             +S+  L L+ N L  K    L        I                  + +  L++  
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELA--YIFSSI-----------------PNHVVSLNLCL 234

Query: 820 NNISGS----LPSCFYPL-SIKQVHLSKNMLHGQLKEG------TFFNCSSLVTLDLSYN 868
           N + G     L      L  ++ V+L  +++    KE        F N   ++ +D +  
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

Query: 869 YL 870
            +
Sbjct: 295 EI 296

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 54/189 (28%), Positives = 74/189 (39%), Gaps = 49/189 (25%)

Query: 87  SLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNR 146
            L      I           LS L   K L LS N      +SSL+ + +LR L L  N 
Sbjct: 29  ELHGMIPPIEKMDAT-----LSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNL 81

Query: 147 LEGSIDVKELDSLRD-LEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDS 205
           ++    ++ LD++ D LEEL I  N+I       G+ KL                     
Sbjct: 82  IK---KIENLDAVADTLEELWISYNQIASL---SGIEKLV-------------------- 115

Query: 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSS----------V 255
             NL VL MS N+I N      +++L+ L KL+ L L GN   N    +          V
Sbjct: 116 --NLRVLYMSNNKITNW---GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170

Query: 256 ARLSSLTSL 264
            RL +L  L
Sbjct: 171 KRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 40/167 (23%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLS-SLRSL 140
            +  + L LS NNI      E +  LS + NL++L L  N      + +L  ++ +L  L
Sbjct: 47  LKACKHLALSTNNI------EKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEEL 98

Query: 141 YLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDV 200
           ++S N++     +  ++ L +L  L +  NKI  +     + KL +L             
Sbjct: 99  WISYNQIA---SLSGIEKLVNLRVLYMSNNKITNW---GEIDKLAAL------------- 139

Query: 201 REFDSFNNLEVLDMSGNEIDNLVVPQGLER------LSRLSKLKKLD 241
                 + LE L ++GN + N               + RL  LKKLD
Sbjct: 140 ------DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 43/186 (23%)

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTF 198
            L+     +E  +D   L +L+  + L +  N I+K      LS ++             
Sbjct: 29  ELHGMIPPIEK-MD-ATLSTLKACKHLALSTNNIEKI---SSLSGME------------- 70

Query: 199 DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL 258
                    NL +L +  N I  +   + L+ +     L++L +  N    + LS + +L
Sbjct: 71  ---------NLRILSLGRNLIKKI---ENLDAV--ADTLEELWISYN--QIASLSGIEKL 114

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEI----DNVEVSRGYRG-----LR 309
            +L  L++S+N +    +  +  +L  LE+L +  N +         +  YR      L 
Sbjct: 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174

Query: 310 KLKSLD 315
            LK LD
Sbjct: 175 NLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 204 DSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTS 263
            +    + L +S N I+ +        LS +  L+ L L  NL    I +  A   +L  
Sbjct: 45  STLKACKHLALSTNNIEKI------SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 264 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
           L +S+N +         + L NL  L +++N+I N         L KL+ L L+G
Sbjct: 98  LWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 234 LSKLKKLDLRGNLCN-NSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIN 292
            ++ +K++L G +     + ++++ L +   L LS N ++  I +     + NL  L + 
Sbjct: 22  ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRILSLG 78

Query: 293 DNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLT 352
            N I  +E          L+ L +S   I      L  +    +L  L++ SNN      
Sbjct: 79  RNLIKKIENLDAV--ADTLEELWISYNQIAS----LSGIEKLVNLRVLYM-SNNKITNWG 131

Query: 353 TTQELHNFTNLEYLTLDD 370
              +L     LE L L  
Sbjct: 132 EIDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 10/129 (7%)

Query: 435 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRI 494
            ++ + K+L+LS + +     +I    L  + +L+ L +  N ++  +    A   +L  
Sbjct: 45  STLKACKHLALSTNNI----EKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 495 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING 554
           L +S+NQ+    S S +  L ++  L +SNN       ++ L    KL+      N +  
Sbjct: 98  LWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154

Query: 555 EINESHSLT 563
           +  E+++ +
Sbjct: 155 DYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 16/99 (16%)

Query: 78  LFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNN-NVLSSLARLSS 136
           L      LE L +S+N I        L G+ +L NL++L +S N   N   +  LA L  
Sbjct: 88  LDAVADTLEELWISYNQI------ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 137 LRSLYLSDNRLEGSIDVKE---------LDSLRDLEELD 166
           L  L L+ N L                 +  L +L++LD
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 54/165 (32%)

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
           ++  +LS   + K L L+ NN+          +  L                    +++L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE--------KISSLSG------------------MENL 72

Query: 813 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 872
           +IL +  N I            I               E       +L  L +SYN +  
Sbjct: 73  RILSLGRNLIK----------KI---------------ENLDAVADTLEELWISYNQIA- 106

Query: 873 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDN 916
           S+   I+ L  L  L +++N +     I  L  L++L+ L L+ N
Sbjct: 107 SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 715 NLEFLSLSNNSLK-GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 773
             E + L         + + + +L+  + L L  N+   +I  SLS   +L+ L L  N 
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNL 81

Query: 774 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 823
           +  KI         L+ + +  N +     +E  +L +L++L +S+N I+
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 17/147 (11%)

Query: 681 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNL 740
           + ++   +   + L LS N +  +I   L+    NL  LSL  N +K  I +       L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 741 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKNHLE 799
             L +  N         + K  +L+ LY++NN ++       L  L  L+ +++  N L 
Sbjct: 96  EELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

Query: 800 GPIPVEFC----------RLDSLQILD 816
                             RL +L+ LD
Sbjct: 154 NDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 20/121 (16%)

Query: 409 HFKSLEHLDMRFARIALNTSFLQIIG-ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 467
             K+ +HL +    I       +I     M +L+ LSL       N  + ++        
Sbjct: 46  TLKACKHLALSTNNIE------KISSLSGMENLRILSLGR-----NLIKKIENLDAVADT 94

Query: 468 LQELYIDNN---DLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
           L+EL+I  N    L G     +    +LR+L +S N++T       L  L  +E+L L+ 
Sbjct: 95  LEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 525 N 525
           N
Sbjct: 150 N 150

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 74.7 bits (184), Expect = 7e-15
 Identities = 44/243 (18%), Positives = 74/243 (30%), Gaps = 53/243 (21%)

Query: 691 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 749
            Q L L    L   IP H      N+  + +S +     + S  F  L  +  + +    
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 750 FVGEIPQS-LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 808
            +  I    L +   LK L + N               GL+           P   +   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNT--------------GLKMF---------PDLTKVYS 128

Query: 809 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN-CSSLVTLDLSY 867
            D   IL+I+DN    S+P                          F   C+  +TL L  
Sbjct: 129 TDIFFILEITDNPYMTSIP-----------------------VNAFQGLCNETLTLKLYN 165

Query: 868 NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR--LNQLQLLDLSDNNLHGLIPSC 925
           N    S+  +    ++L  + L  N     +         +   LLD+S  ++  L    
Sbjct: 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG 224

Query: 926 FDN 928
            ++
Sbjct: 225 LEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 41/238 (17%), Positives = 81/238 (34%), Gaps = 40/238 (16%)

Query: 85  LESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR-----LSSLRS 139
            ++L L   ++     +      S L N+  + +S +      L  L       LS +  
Sbjct: 33  TQTLKLIETHLRTIPSHA----FSNLPNISRIYVSID----VTLQQLESHSFYNLSKVTH 84

Query: 140 LYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFD 199
           + + + R    ID   L  L  L+ L I    +  F                       D
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF----------------------PD 122

Query: 200 VREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLS 259
           + +  S +   +L+++ N     +     + L        L L  N    S+       +
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNNGF-TSVQGYAFNGT 179

Query: 260 SLTSLHLSHNILQGSIDAKEFDSL-SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDL 316
            L +++L+ N     ID   F  + S    LD++   +  +  S+G   L++L + + 
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP-SKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 34/247 (13%), Positives = 75/247 (30%), Gaps = 45/247 (18%)

Query: 807  CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866
            C     +   ++  +I   +PS   P S + + L +  L   +    F N  ++  + +S
Sbjct: 8    CECHQEEDFRVTCKDIQ-RIPSL--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVS 63

Query: 867  YNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGL--- 921
             +     +       LS+++H+ + +      +     + L  L+ L + +  L      
Sbjct: 64   IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDL 123

Query: 922  --IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 979
              + S      L  + N                         +  I     + +      
Sbjct: 124  TKVYSTDIFFILEITDNP-----------------------YMTSIPVNAFQGLC----- 155

Query: 980  RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP-LTFSNLRH-IESLD 1037
               +    L L  N     +     N T++  + L+ N     I    F  +      LD
Sbjct: 156  ---NETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 1038 LSYNKLS 1044
            +S   ++
Sbjct: 212  VSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 17/148 (11%)

Query: 208 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-ARLSSLTSLHL 266
           + + L +    +  +  P      S L  + ++ +  ++    + S     LS +T + +
Sbjct: 32  STQTLKLIETHLRTI--PSHA--FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 267 SHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNK 326
            +      ID      L  L+ L I +  +                 L+++       N 
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT------DNP 141

Query: 327 LLQSM--GSFPSLN----TLHLESNNFT 348
            + S+   +F  L     TL L +N FT
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 38/241 (15%), Positives = 84/241 (34%), Gaps = 49/241 (20%)

Query: 811  SLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 869
            S Q L + + ++       F  L  I ++++S ++   QL+  +F+N S +  +++    
Sbjct: 32   STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 870  LNGSIP-DWIDGLSQLSHLNLAHNNLEGEVP--IQLCRLNQLQLLDLSDNN-LHGLIPSC 925
                I  D +  L  L  L + +  L+   P   ++   +   +L+++DN  +  +  + 
Sbjct: 92   NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 926  FDN-----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 979
            F        TL    N  +S     F                                  
Sbjct: 151  FQGLCNETLTLKLYNNGFTSVQGYAFN--------------------------------- 177

Query: 980  RVLSLLAGLDLSCNKLVGHIPPQI--GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037
               + L  + L+ NK +  I      G  +    L++S  ++T        +L+ + + +
Sbjct: 178  --GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

Query: 1038 L 1038
             
Sbjct: 236  T 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 33/196 (16%), Positives = 72/196 (36%), Gaps = 16/196 (8%)

Query: 604 IGEFPNWLLENNTKLEFLYL-VNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPV 658
           +   P+    N   +  +Y+ ++ +L    +  F    ++  ++  +++ N     +I  
Sbjct: 43  LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF----YNLSKVTHIEIRNTRNLTYIDP 98

Query: 659 EIGDILPSLVYFNISMNALDGSIP--SSFGNVIFLQFLDLSNNKLTGEIPDH-LAMCCVN 715
           +    LP L +  I    L    P  +   +      L++++N     IP +     C  
Sbjct: 99  DALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 716 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL--SKCSSLKGLYLNNNN 773
              L L NN     +    F+   L  + L  N ++  I +       S    L ++  +
Sbjct: 158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 774 LSGKIPRWLGNLKGLQ 789
           ++    + L +LK L 
Sbjct: 217 VTALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 38/291 (13%), Positives = 73/291 (25%), Gaps = 82/291 (28%)

Query: 247 CNNSILSSVARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 305
                +  +  L  S  +L L    L+ +I +  F +L N+  + ++ +           
Sbjct: 18  VTCKDIQRIPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID----------- 65

Query: 306 RGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNFTN 362
                L+ L+                 SF     +  + + +      +           
Sbjct: 66  ---VTLQQLE---------------SHSFYNLSKVTHIEIRNTRNLTYIDPDA----LKE 103

Query: 363 LEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFAR 422
           L                      P LK L +    +                 L++    
Sbjct: 104 L----------------------PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI---- 137

Query: 423 IALNTSFLQIIGESM-----PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI-DNN 476
              +  ++  I  +           L L       N    +         L  +Y+  N 
Sbjct: 138 --TDNPYMTSIPVNAFQGLCNETLTLKLYN-----NGFTSVQGYAFNGTKLDAVYLNKNK 190

Query: 477 DLRGSLPWCLAN-TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 526
            L            +   +LDVS   +T ++ S  L HL     L   N  
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKE---LIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 982  LSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLS 1039
            L  ++ + +S +  +  +      NL+++  + + +      I       L  ++ L + 
Sbjct: 54   LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 1040 YNKLSGKIP--RQLVDLNTLAIFIVAYNNLSGKIPE 1073
               L    P   ++   +   I  +  N     IP 
Sbjct: 114  NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 9/142 (6%)

Query: 438 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILD 496
           PS + L L  + L      I       L ++  +Y+  +     L      N + +  ++
Sbjct: 31  PSTQTLKLIETHL----RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 497 VSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEI 556
           +   +    I    L  L  ++ L + N   ++   L  +++     I +  +N     I
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 557 NES--HSLTPKFQLKSLSLSSN 576
             +    L    +  +L L +N
Sbjct: 147 PVNAFQGLCN--ETLTLKLYNN 166

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 24/138 (17%)

Query: 73  YLNASLFTPFQQLESLDLSWNNI------AGCAENEGLEGLSRLNNLKMLDLSGNAF--- 123
           Y++         L+ L +    +            +    L   +N  M  +  NAF   
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154

Query: 124 ---------NNNVLSSLA----RLSSLRSLYLSDNRLEGSIDVKELDSLR-DLEELDIGG 169
                     NN  +S+       + L ++YL+ N+    ID      +      LD+  
Sbjct: 155 CNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214

Query: 170 NKIDKFMVSKGLSKLKSL 187
             +     SKGL  LK L
Sbjct: 215 TSVTALP-SKGLEHLKEL 231

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.4 bits (188), Expect = 1e-14
 Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 35/192 (18%)

Query: 112 NLKMLDLSGNAFNN-NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGN 170
              +LDLS N  +      +  RL++L SL LS N L   I  +    + +L  LD+  N
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 171 KIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLER 230
                        L +L               F     LEVL +  N I  +   +    
Sbjct: 99  ------------HLHTLD-EFL----------FSDLQALEVLLLYNNHIVVV--DRNA-- 131

Query: 231 LSRLSKLKKLDLRGNLCNN---SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNL- 286
              +++L+KL L  N  +     ++    +L  L  L LS N L+  +   +   L    
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWV 190

Query: 287 -EELDINDNEID 297
              L +++N ++
Sbjct: 191 KNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 33/181 (18%)

Query: 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR-----LSS 260
            +   +LD+S N +  L   +     +RL+ L  L L  N      L+ ++      + +
Sbjct: 38  PSYTALLDLSHNNLSRL---RAEWTPTRLTNLHSLLLSHNH-----LNFISSEAFVPVPN 89

Query: 261 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 320
           L  L LS N L  ++D   F  L  LE L + +N I  V+    +  + +L+ L LS   
Sbjct: 90  LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLS--- 144

Query: 321 IRDGNKL-------LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL 373
               N++       ++     P L  L L SN           L +   L     +   L
Sbjct: 145 ---QNQISRFPVELIKDGNKLPKLMLLDLSSNKL-----KKLPLTDLQKLPAWVKNGLYL 196

Query: 374 H 374
           H
Sbjct: 197 H 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSGKIPRW-LGNLKGLQHIVMPKNHLEGPIPVE-FCRLD 810
            +PQSL   S    L L++NNLS     W    L  L  +++  NHL   I  E F  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 811 SLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 868
           +L+ LD+S N++  +L    F  L +++ + L  N +   +    F + + L  L LS N
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 869 YLNGSIP----DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL--LDLSDNNLH 919
            ++   P       + L +L  L+L+ N L+      L +L       L L +N L 
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.9 bits (184), Expect = 3e-14
 Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 39/196 (19%)

Query: 160 RDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEI 219
                LD+  N + +              L                  NL  L +S N +
Sbjct: 39  SYTALLDLSHNNLSR--------------LRAEWT--------PTRLTNLHSLLLSHNHL 76

Query: 220 DNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHNILQGS 274
           + +           +  L+ LDL  N      L ++     + L +L  L L +N +   
Sbjct: 77  NFI--SSEA--FVPVPNLRYLDLSSNH-----LHTLDEFLFSDLQALEVLLLYNNHIV-V 126

Query: 275 IDAKEFDSLSNLEELDINDNEIDNVEVS--RGYRGLRKLKSLDLSGVGIRDGNKLLQSMG 332
           +D   F+ ++ L++L ++ N+I    V   +    L KL  LDLS   ++          
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 333 SFPSLNTLHLESNNFT 348
                N L+L +N   
Sbjct: 187 PAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 14/141 (9%)

Query: 811 SLQILDISDNNISGSLPS--CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 867
              +LD+S NN+S  L +      L+ +  + LS N L+  +    F    +L  LDLS 
Sbjct: 40  YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 868 NYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 926
           N+L+ ++ +++   L  L  L L +N++          + QLQ L LS N +        
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 927 DN-------TTLHESYNNNSS 940
            +         L  S N    
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKK 177

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 10/164 (6%)

Query: 691 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 749
              LDLS+N L+    +       NL  L LS+N L   I S  F  + NLR+L L  NH
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 750 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE---- 805
                    S   +L+ L L NN++         ++  LQ + + +N +    PVE    
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKD 158

Query: 806 FCRLDSLQILDISDNNISGSLPSCFYPLS---IKQVHLSKNMLH 846
             +L  L +LD+S N +     +    L       ++L  N L 
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 47/215 (21%), Positives = 71/215 (33%), Gaps = 61/215 (28%)

Query: 858  SSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSD 915
            S    LDLS+N L+    +W    L+ L  L L+HN+L   +  +    +  L+ LDLS 
Sbjct: 39   SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 916  NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 975
            N+LH L    F +                                               
Sbjct: 98   NHLHTLDEFLFSD----------------------------------------------- 110

Query: 976  AYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSN---LR 1031
                  L  L  L L  N +V  +      ++ ++Q L LS N ++        +   L 
Sbjct: 111  ------LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 1032 HIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 1066
             +  LDLS NKL       L  L       +  +N
Sbjct: 164  KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.6 bits (160), Expect = 3e-11
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 437 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRIL 495
           + +L  L LS + L   SS         + +L+ L + +N L  +L     ++  +L +L
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVP----VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVL 117

Query: 496 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHF-RIPV-SLEPLFNHSKLKIFDAKNNEIN 553
            +  N +   +  +    +  +++L LS N   R PV  ++      KL + D  +N++ 
Sbjct: 118 LLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

Query: 554 GEINESHSLTPKFQLKSLSLSSN 576
                     P +    L L +N
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 50/248 (20%), Positives = 82/248 (33%), Gaps = 69/248 (27%)

Query: 856  NCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDL 913
            NC  +   L  S   L  ++P  +   S  + L+L+HNNL          RL  L  L L
Sbjct: 15   NCLCASNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL 71

Query: 914  SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 973
            S N+L+ +    F                                               
Sbjct: 72   SHNHLNFISSEAFVP--------------------------------------------- 86

Query: 974  AYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRH 1032
                    +  L  LDLS N L   +   +  +L  ++ L L +N++       F ++  
Sbjct: 87   --------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 1033 IESLDLSYNKLSGKIPRQ----LVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY-- 1086
            ++ L LS N++S + P +       L  L +  ++ N L  K+P    Q       +   
Sbjct: 138  LQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLY 195

Query: 1087 -DGNPFLC 1093
               NP  C
Sbjct: 196  LHNNPLEC 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 43/193 (22%), Positives = 69/193 (35%), Gaps = 55/193 (28%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
            T    L SL LS N++                      +S  AF          + +LR
Sbjct: 60  PTRLTNLHSLLLSHNHLN--------------------FISSEAFVP--------VPNLR 91

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTF 198
            L LS N L  ++D      L+ LE L +  N I   +V +                   
Sbjct: 92  YLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV--VVDRNA----------------- 131

Query: 199 DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL 258
               F+    L+ L +S N+I      + ++  ++L KL  LDL  N      L+ + +L
Sbjct: 132 ----FEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 259 SSLT--SLHLSHN 269
            +     L+L +N
Sbjct: 187 PAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 608 PNWLLENNTKLEFLYLVNDSL----AGPFR-LPIHSHKRLRFLDVSNNNFQGHIPVEIGD 662
             W     T L  L L ++ L    +  F  +P      LR+LD+S+N+    +   +  
Sbjct: 56  AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-----NLRYLDLSSNHLH-TLDEFLFS 109

Query: 663 ILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 721
            L +L    +  N +   +   +F ++  LQ L LS N+++   P               
Sbjct: 110 DLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPV-------------- 153

Query: 722 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLK--GLYLNNNNL 774
                   +      L  L  L L  N         L K  +    GLYL+NN L
Sbjct: 154 -------ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 24/130 (18%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEG--LSRLNNLKMLDLSGNAFNNNVLSS 130
           ++++  F P   L  LDLS N++        L+    S L  L++L L      NN +  
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHL------HTLDEFLFSDLQALEVLLL-----YNNHIVV 126

Query: 131 LAR-----LSSLRSLYLSDNRLEGSIDV---KELDSLRDLEELDIGGNKIDKFMVS--KG 180
           + R     ++ L+ LYLS N++     V   K+ + L  L  LD+  NK+ K  ++  + 
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185

Query: 181 LSKLKSLGLS 190
           L      GL 
Sbjct: 186 LPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 438 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 497
                L LS + L    +   +     L +L  L + +N L            +LR LD+
Sbjct: 39  SYTALLDLSHNNLSRLRA---EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 498 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDAKNNEI--- 552
           S N L  ++       L ++E L L NNH      ++   F   ++L+      N+I   
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQISRF 151

Query: 553 -NGEINESHSLTPKFQLKSLSLSSN 576
               I + + L    +L  L LSSN
Sbjct: 152 PVELIKDGNKLP---KLMLLDLSSN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGN---AFNNNVLSS 130
           L+  LF+  Q LE L L  N+I     N        +  L+ L LS N    F   ++  
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRN----AFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 131 LARLSSLRSLYLSDNRLEGSIDVKELDSLRDL--EELDIGGNKID 173
             +L  L  L LS N+L+  + + +L  L       L +  N ++
Sbjct: 159 GNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 17/172 (9%)

Query: 334 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSLKN 390
                 L L  NN +  L         TNL  L L  +  H++ + S    F   P+L+ 
Sbjct: 38  PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHN--HLNFISS--EAFVPVPNLRY 92

Query: 391 LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSLKYLSLSGS 448
           L +S   ++  L    F   ++LE L +    I +    +F     E M  L+ L LS +
Sbjct: 93  LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAF-----EDMAQLQKLYLSQN 146

Query: 449 TLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 500
            +      ++      L  L  L + +N L+      L    +     +  +
Sbjct: 147 QISRFPVELIK-DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 43/194 (22%)

Query: 490 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDA 547
           +   +LD+S N L+   +      LT++  L LS+NH      +    F     L+  D 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLRYLDL 95

Query: 548 KNNEINGEINES--HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIG 605
            +N ++  ++E     L     L+ L L +N                       HI ++ 
Sbjct: 96  SSNHLH-TLDEFLFSDLQ---ALEVLLLYNN-----------------------HIVVV- 127

Query: 606 EFPNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG 661
                  E+  +L+ LYL  + +        +   +   +L  LD+S+N  +  +P+   
Sbjct: 128 --DRNAFEDMAQLQKLYLSQNQISRFPVELIK-DGNKLPKLMLLDLSSNKLK-KLPLTDL 183

Query: 662 DILPSLVYFNISMN 675
             LP+ V   + ++
Sbjct: 184 QKLPAWVKNGLYLH 197

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.5 bits (190), Expect = 1e-14
 Identities = 44/240 (18%), Positives = 79/240 (32%), Gaps = 42/240 (17%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLR 138
               +QL   +LS               L     L+ L+        N    L  +  +R
Sbjct: 345 SATDEQLFRCELSVEKS-----TVLQSELESCKELQELEP------ENKWCLLTIILLMR 393

Query: 139 SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTF 198
           +L       E       L     L+ +D         + SK L +               
Sbjct: 394 ALDPLLYEKET------LQYFSTLKAVDPMRAAYLDDLRSKFLLENSV------------ 435

Query: 199 DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL 258
                  + ++ VL ++  ++  L        L +L  +  LDL  N    ++  ++A L
Sbjct: 436 ---LKMEYADVRVLHLAHKDLTVL------CHLEQLLLVTHLDLSHNRLR-ALPPALAAL 485

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
             L  L  S N L+ ++D     +L  L+EL + +N +      +      +L  L+L G
Sbjct: 486 RCLEVLQASDNALE-NVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.3 bits (174), Expect = 1e-12
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 36/168 (21%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEG----LSRLNNLKMLDLSGNAFNNNVLSSLARLSSL 137
           F  L+++D           ++ L           ++++L L+        L  L +L  +
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLLV 465

Query: 138 RSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGT 197
             L LS NRL  ++    L +LR LE L    N ++      G++ L             
Sbjct: 466 THLDLSHNRLR-ALP-PALAALRCLEVLQASDNALENV---DGVANLP------------ 508

Query: 198 FDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 245
                      L+ L +  N +        ++ L    +L  L+L+GN
Sbjct: 509 ----------RLQELLLCNNRLQQS---AAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 2e-12
 Identities = 50/335 (14%), Positives = 96/335 (28%), Gaps = 17/335 (5%)

Query: 736  SLRN-LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794
            S     RWLL             +S+  +   +  +     G     L  +     + + 
Sbjct: 227  SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVE 286

Query: 795  KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 854
                +G        L  L    ++D           +  S  Q          +      
Sbjct: 287  WRTPDGRNRPSHVWLCDLPAASLNDQLPQ-HTFRVIWTGSDSQKECVLLKDRPECWCRDS 345

Query: 855  FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 914
                 L   +LS       +   ++   +L  L   +      + + +  L+ L     +
Sbjct: 346  ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 915  DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 974
                  L           +   +    +               +  K L +      ++ 
Sbjct: 405  LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC----HLE 460

Query: 975  YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 1034
                   L L+  LDLS N+L   +PP +  L  ++ L  S N L   +    +NL  ++
Sbjct: 461  Q------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQ 511

Query: 1035 SLDLSYNKLSG-KIPRQLVDLNTLAIFIVAYNNLS 1068
             L L  N+L      + LV    L +  +  N+L 
Sbjct: 512  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 1e-11
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
              +  LDLS N +           L+ L  L++L  S NA  N  +  +A L  L+ L 
Sbjct: 462 LLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALEN--VDGVANLPRLQELL 514

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF-----MVSKGLSKLKSL 187
           L +NRL+ S  ++ L S   L  L++ GN + +       +++ L  + S+
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 3e-11
 Identities = 38/239 (15%), Positives = 83/239 (34%), Gaps = 19/239 (7%)

Query: 334 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSM 393
             +   L     +   +     EL +   L+ L  ++    ++++         ++ L  
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL-------MRALDP 397

Query: 394 SGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTN 453
              E   +           +          +       ++      ++ L L+   L   
Sbjct: 398 LLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--- 453

Query: 454 SSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVH 513
            + +    L  L  +  L + +N LR +LP  LA    L +L  S N L    +   + +
Sbjct: 454 -TVL--CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVAN 506

Query: 514 LTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF-QLKSL 571
           L  ++EL L NN  +   +++PL +  +L + + + N +  E      L      + S+
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 1e-09
 Identities = 43/310 (13%), Positives = 88/310 (28%), Gaps = 34/310 (10%)

Query: 464 PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 523
            +     +  +   L       L   + +  L +  ++   S+             + L 
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302

Query: 524 NNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF----QLKSLSLSSNYGD 579
           +          P      +        E     +             QL    LS     
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK-- 360

Query: 580 SVTFPKFLYHQHELKEAE-------------LSHIKMIGEFPNWL--LENNTKLEFLYLV 624
           S      L    EL+E E             +  +  +      L        ++ +   
Sbjct: 361 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420

Query: 625 NDSLA-----GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG 679
                         +    +  +R L +++ +      +   + L  + + ++S N L  
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLR- 476

Query: 680 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH-IFSRIFSLR 738
           ++P +   +  L+ L  S+N L   +   +A     L+ L L NN L+       + S  
Sbjct: 477 ALPPALAALRCLEVLQASDNALE-NVD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCP 533

Query: 739 NLRWLLLEGN 748
            L  L L+GN
Sbjct: 534 RLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 2e-09
 Identities = 54/329 (16%), Positives = 98/329 (29%), Gaps = 24/329 (7%)

Query: 200 VREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLS 259
           +   +  + L  + +S  E    +       L+  S++  L L  +    S+        
Sbjct: 236 LGRAEPHDVLCCVHVSREE--ACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293

Query: 260 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGV 319
           +  S     ++   S++ +       +     +  +   +   R     R   + +    
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR 353

Query: 320 GIRDGNKLLQSMGSFPSLNTL-HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLL 378
                 K         S   L  LE  N    LT    +     L Y             
Sbjct: 354 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS---- 409

Query: 379 QSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG--ES 436
                   +LK +          L  +       L+        + L    L ++   E 
Sbjct: 410 --------TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ 461

Query: 437 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILD 496
           +  + +L LS      N  R L   L  L  L+ L   +N L  ++   +AN   L+ L 
Sbjct: 462 LLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELL 514

Query: 497 VSFNQLTGSISSSPLVHLTSIEELRLSNN 525
           +  N+L  S +  PLV    +  L L  N
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 2e-05
 Identities = 49/289 (16%), Positives = 87/289 (30%), Gaps = 48/289 (16%)

Query: 442 YLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ 501
              L  ++L     +   + +   +  Q+  +   D         A    L   ++S  +
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360

Query: 502 LTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 561
            T  +  S L     ++EL   N        L  +    +         E     +   +
Sbjct: 361 ST--VLQSELESCKELQELEPENKWC-----LLTIILLMRALDPLLYEKETLQYFSTLKA 413

Query: 562 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHE---LKEAELSHIKMIGEFPNWLLENNTKL 618
           + P        L S +    +  K  Y       L   +L+ +  + +            
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL--------- 464

Query: 619 EFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALD 678
                                  +  LD+S+N  +  +P  +   L  L     S NAL+
Sbjct: 465 -----------------------VTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALE 499

Query: 679 GSIPSSFGNVIFLQFLDLSNNKLTG-EIPDHLAMCCVNLEFLSLSNNSL 726
            ++     N+  LQ L L NN+L        L   C  L  L+L  NSL
Sbjct: 500 -NVDG-VANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 5e-05
 Identities = 48/338 (14%), Positives = 94/338 (27%), Gaps = 28/338 (8%)

Query: 346 NFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQ 405
            +   L    E H+     +++ +++ L +   + +         L M       V    
Sbjct: 230 FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289

Query: 406 GFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPL 465
                +            +LN    Q     + +    S     L  +      +     
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSD-SQKECVLLKDRPECWCRDSATD 348

Query: 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR---L 522
             L    +                T L+    S  +L      +    LT I  +R    
Sbjct: 349 EQLFRCELSVEKS-----------TVLQSELESCKELQELEPENKWCLLTIILLMRALDP 397

Query: 523 SNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVT 582
                        L     ++     +      +  S        ++ L L+      +T
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK---DLT 454

Query: 583 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN---DSLAGPFRLPIHSH 639
               L     +   +LSH + +   P  L      LE L   +   +++ G     + + 
Sbjct: 455 VLCHLEQLLLVTHLDLSHNR-LRALPPAL-AALRCLEVLQASDNALENVDG-----VANL 507

Query: 640 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 677
            RL+ L + NN  Q    ++     P LV  N+  N+L
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 74.1 bits (182), Expect = 4e-14
 Identities = 46/227 (20%), Positives = 92/227 (40%), Gaps = 23/227 (10%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLEGL-SRLNNLKMLDLSGNAFNNNVLSSLARLS 135
           +      +++ +DLS + I    E   L G+ S+ + L+ L L G   ++ ++++LA+ S
Sbjct: 87  AEHFSPFRVQHMDLSNSVI----EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142

Query: 136 SLRSLYLSDNRLEGSIDVKEL-DSLRDLEELDIGG-NKID----KFMVSKGLSKLKSLGL 189
           +L  L LS         ++ L  S   L+EL++           +  V+     +  L L
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202

Query: 190 SGTGFKGTFD-VREF-DSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRG--N 245
           SG         +        NL  LD+S +    ++     +   +L+ L+ L L    +
Sbjct: 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDS---VMLKNDCFQEFFQLNYLQHLSLSRCYD 259

Query: 246 LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIN 292
           +   + L  +  + +L +L +   +  G++          L  L IN
Sbjct: 260 IIPET-LLELGEIPTLKTLQVFGIVPDGTLQL----LKEALPHLQIN 301

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 64.1 bits (156), Expect = 8e-11
 Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 8/191 (4%)

Query: 360 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 419
              ++++ L +S + +S L  I S    L+NLS+ G  ++            +L  L++ 
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLS 150

Query: 420 FARIALNTSFLQIIGESMPSLKYLSLSG-STLGTNSSRILDQGLCPLAHLQELYIDNNDL 478
                 +   LQ +  S   L  L+LS          ++    +     + +L +     
Sbjct: 151 GCS-GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE--TITQLNLSGYRK 207

Query: 479 R---GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 535
                 L   +    +L  LD+S + +  +        L  ++ L LS  +  IP +L  
Sbjct: 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267

Query: 536 LFNHSKLKIFD 546
           L     LK   
Sbjct: 268 LGEIPTLKTLQ 278

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 60.7 bits (147), Expect = 9e-10
 Identities = 50/275 (18%), Positives = 100/275 (36%), Gaps = 22/275 (8%)

Query: 230 RLSRLSKLKKLDLRGNLCNNSILSSV-ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 288
           R  RL+  + L    +L   ++   V  RL S   +              E  S   ++ 
Sbjct: 38  RWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH 97

Query: 289 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 348
           +D++++ I+   +        KL++L L G+ + D   ++ ++    +L  L+L   +  
Sbjct: 98  MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGF 155

Query: 349 ATLTTTQELHNFTNLEYLTLDDSSL--HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG 406
           +       L + + L+ L L          +  ++  +  ++  L++SG      L    
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY--RKNLQKSD 213

Query: 407 FPHF----KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGL 462
                    +L HLD+  +   L     Q     +  L++LSLS          I+ + L
Sbjct: 214 LSTLVRRCPNLVHLDLSDSV-MLKNDCFQEFF-QLNYLQHLSLSRCY------DIIPETL 265

Query: 463 CPLAH---LQELYIDNNDLRGSLPWCLANTTSLRI 494
             L     L+ L +      G+L         L+I
Sbjct: 266 LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 300

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 52/246 (21%), Positives = 105/246 (42%), Gaps = 12/246 (4%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGN-AFNNNVLSSLARLSSLRSL 140
           + +L S +  W  +    +N   +   RL +  ++      +F +  L+       ++ +
Sbjct: 39  WYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHM 98

Query: 141 YLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSK--GLSKLKSLGLSG-TGFKGT 197
            LS++ +E S     L     L+ L + G ++   +V+     S L  L LSG +GF   
Sbjct: 99  DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158

Query: 198 FDVREFDSFNNLEVLDMSG-NEIDNLVVPQGLERLSRLSKLKKLDLRG---NLCNNSILS 253
                  S + L+ L++S   +     V   +  +S    + +L+L G   NL  + + +
Sbjct: 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE--TITQLNLSGYRKNLQKSDLST 216

Query: 254 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND-NEIDNVEVSRGYRGLRKLK 312
            V R  +L  L LS +++  +   +EF  L+ L+ L ++   +I    +      +  LK
Sbjct: 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLK 275

Query: 313 SLDLSG 318
           +L + G
Sbjct: 276 TLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 58/304 (19%), Positives = 102/304 (33%), Gaps = 57/304 (18%)

Query: 632 FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 691
           +          + LD++  N    +   +  +   ++ F    + +D  +   F     +
Sbjct: 39  WYRLASDESLWQTLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPF-RV 95

Query: 692 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV 751
           Q +DLSN+ +       +   C  L+ LSL    L   I + +    NL  L L G    
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155

Query: 752 GE--IPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 808
            E  +   LS CS L  L L+   + +          K +Q  V                
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTE---------KHVQVAV-----------AHVSE 195

Query: 809 LDSLQILDISDNNISGSLPSCFYPLSIKQV-HLSKNMLHGQLKEGTFFNCSSLVTLDLSY 867
             ++  L++S              L    +  L +              C +LV LDLS 
Sbjct: 196 --TITQLNLSG---------YRKNLQKSDLSTLVR-------------RCPNLVHLDLSD 231

Query: 868 NY-LNGSIPDWIDGLSQLSHLNLAH-NNLEGEVPIQLCRLNQLQLLDL----SDNNLHGL 921
           +  L          L+ L HL+L+   ++  E  ++L  +  L+ L +     D  L  L
Sbjct: 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 291

Query: 922 IPSC 925
             + 
Sbjct: 292 KEAL 295

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 14/173 (8%)

Query: 610 WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN-NNFQGHIPVEIGDILPSLV 668
            +L   +KL+ L L    L+ P    +  +  L  L++S  + F       +      L 
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171

Query: 669 YFNIS------MNALDGSIPSSFGNVIFLQFLDLS--NNKLTGEIPDHLAMCCVNLEFLS 720
             N+S         +  ++         +  L+LS     L       L   C NL  L 
Sbjct: 172 ELNLSWCFDFTEKHVQVAVAHVSET---ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228

Query: 721 LSN-NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI-PQSLSKCSSLKGLYLNN 771
           LS+   LK   F   F L  L+ L L   + +       L +  +LK L +  
Sbjct: 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 29/139 (20%)

Query: 76  ASLFTPFQQLESLDLSWN----------------------NIAGCAEN---EGLEGLSR- 109
            +L +   +L+ L+LSW                       N++G  +N     L  L R 
Sbjct: 161 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220

Query: 110 LNNLKMLDLSGNAF-NNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIG 168
             NL  LDLS +    N+      +L+ L+ L LS         + EL  +  L+ L + 
Sbjct: 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280

Query: 169 GNKIDKFM--VSKGLSKLK 185
           G   D  +  + + L  L+
Sbjct: 281 GIVPDGTLQLLKEALPHLQ 299

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 29/216 (13%)

Query: 86  ESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDN 145
              +L   ++            + LN++  +  + +   +  +  +  L ++R L L  N
Sbjct: 22  IKANLKKKSVTD------AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGN 73

Query: 146 RLEGSIDVKELDSLRDLEELDIGGNKIDK--FMVSKGLSKLKSLGLSGTGFKGTFDVREF 203
           +L   I    L  L +L  L + GN++      V   L+ LK L L     + +     F
Sbjct: 74  KLH-DISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVF 129

Query: 204 DSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA-----RL 258
           D   NL  L+++ N++ +L  P+G+    +L+ L +LDL  N      L S+      +L
Sbjct: 130 DKLTNLTYLNLAHNQLQSL--PKGV--FDKLTNLTELDLSYNQ-----LQSLPEGVFDKL 180

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
           + L  L L  N L+ S+    FD L++L+ + ++DN
Sbjct: 181 TQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 21/189 (11%)

Query: 116 LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 175
            +L   +  +    +   L+S+  +  +++ ++    V+ +  L ++  L +GGNK+   
Sbjct: 24  ANLKKKSVTD--AVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHDI 78

Query: 176 MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 235
              K L+ L  L L+G   + +     FD   NL+ L +  N++ +L  P G+    +L+
Sbjct: 79  SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSL--PDGV--FDKLT 133

Query: 236 KLKKLDLRGNLCNNSILSSVA-----RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELD 290
            L  L+L  N      L S+      +L++LT L LS+N LQ S+    FD L+ L++L 
Sbjct: 134 NLTYLNLAHNQ-----LQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLR 187

Query: 291 INDNEIDNV 299
           +  N++ +V
Sbjct: 188 LYQNQLKSV 196

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 46/205 (22%)

Query: 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA---RLS 259
            +  N+++ +  + ++I      + ++ +  L  ++ L L GN      L  ++    L+
Sbjct: 37  QNELNSIDQIIANNSDI------KSVQGIQYLPNVRYLALGGNK-----LHDISALKELT 85

Query: 260 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGV 319
           +LT L L+ N LQ S+    FD L+NL+EL + +N++ ++     +  L  L  L+L+  
Sbjct: 86  NLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLP-DGVFDKLTNLTYLNLA-- 141

Query: 320 GIRDGNKLLQSM--GSFPSL---NTLHLESNNFTATLTTTQEL-----HNFTNLEYLTLD 369
                N+ LQS+  G F  L     L L  N   +       L        T L+ L   
Sbjct: 142 ----HNQ-LQSLPKGVFDKLTNLTELDLSYNQLQS-------LPEGVFDKLTQLKDL--- 186

Query: 370 DSSLHISLLQSI-GSIFPSLKNLSM 393
              L+ + L+S+   +F  L +L  
Sbjct: 187 --RLYQNQLKSVPDGVFDRLTSLQY 209

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 72/245 (29%)

Query: 658 VEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP--DHLAMCCVN 715
               + L S+     + + +  S+      +  +++L L  NKL  +I     L     N
Sbjct: 34  AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLH-DISALKEL----TN 86

Query: 716 LEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYL 769
           L +L L+ N L+  + + +F  L NL+ L+L  N       QSL      K ++L  L L
Sbjct: 87  LTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-----QSLPDGVFDKLTNLTYLNL 140

Query: 770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC 829
            +N L   +P+ +                       F +L +L  LD+S N +  SLP  
Sbjct: 141 AHNQLQ-SLPKGV-----------------------FDKLTNLTELDLSYNQLQ-SLP-- 173

Query: 830 FYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLN 888
                                EG F   + L  L L  N L  S+PD + D L+ L ++ 
Sbjct: 174 ---------------------EGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW 211

Query: 889 LAHNN 893
           L H+N
Sbjct: 212 L-HDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 11/175 (6%)

Query: 759 SKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 817
                      L   +++  + +    L  +  I+   + ++         L +++ L +
Sbjct: 15  DDAFAETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLAL 70

Query: 818 SDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 876
             N +   + +    L ++  + L+ N L   L  G F   ++L  L L  N L  S+PD
Sbjct: 71  GGNKLH-DISA-LKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPD 126

Query: 877 WI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 930
            + D L+ L++LNLAHN L+        +L  L  LDLS N L  L    FD  T
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 16/173 (9%)

Query: 762 SSLKGLYLNNNNLSGK--IPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 819
           +S+  +  NN+++     I      L  ++++ +  N L   I      L +L  L ++ 
Sbjct: 41  NSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLH-DISA-LKELTNLTYLILTG 94

Query: 820 NNISGSLPS-CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 877
           N +  SLP+  F  L+ +K++ L +N L   L +G F   ++L  L+L++N L  S+P  
Sbjct: 95  NQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKG 151

Query: 878 I-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN 928
           + D L+ L+ L+L++N L+  +P  +  +L QL+ L L  N L  +    FD 
Sbjct: 152 VFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 22/143 (15%)

Query: 616 TKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 671
           T L +L L  + L     G F         L+ L +  N  Q  +P  + D L +L Y N
Sbjct: 85  TNLTYLILTGNQLQSLPNGVFDKL----TNLKELVLVENQLQS-LPDGVFDKLTNLTYLN 139

Query: 672 ISMNALDGSIPSS-FGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSL 726
           ++ N L  S+P   F  +  L  LDLS N+L   +P    D L      L+ L L  N L
Sbjct: 140 LAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKL----TQLKDLRLYQNQL 193

Query: 727 KGHIFSRIF-SLRNLRWLLLEGN 748
           K  +   +F  L +L+++ L  N
Sbjct: 194 KS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 385 FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG--ESMPSLKY 442
              L ++       + + S QG  +  ++ +L        L  + L  I   + + +L Y
Sbjct: 37  QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLA-------LGGNKLHDISALKELTNLTY 89

Query: 443 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP-WCLANTTSLRILDVSFNQ 501
           L L+G+ L +  + + D+    L +L+EL +  N L+ SLP       T+L  L+++ NQ
Sbjct: 90  LILTGNQLQSLPNGVFDK----LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQ 144

Query: 502 LTGSISSSPLVHLTSIEELRLSNN 525
           L  S+       LT++ EL LS N
Sbjct: 145 LQ-SLPKGVFDKLTNLTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 50/232 (21%), Positives = 81/232 (34%), Gaps = 52/232 (22%)

Query: 825  SLPS-CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 883
              P          + +L K  +       T    +S+  +  + + +  S+   I  L  
Sbjct: 12   IFPDDA--FAETIKANLKKKSV---TDAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPN 64

Query: 884  LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNS 939
            + +L L  N L  ++   L  L  L  L L+ N L  L    FD       L    N   
Sbjct: 65   VRYLALGGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122

Query: 940  SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 999
            S             P G        +F+  T              L  L+L+ N+L   +
Sbjct: 123  SL------------PDG--------VFDKLTN-------------LTYLNLAHNQLQS-L 148

Query: 1000 PPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLSGKIPR 1049
            P  +   LT +  L+LS+N L  ++P   F  L  ++ L L  N+L   +P 
Sbjct: 149  PKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPD 198

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 14/152 (9%)

Query: 169 GNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL 228
           G +I   + ++  S +K L L  +           D F  LE L      + ++      
Sbjct: 4   GRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI------ 57

Query: 229 ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 288
             L +L+KLKKL+L  N  +  +     +  +LT L+LS N ++     +    L NL+ 
Sbjct: 58  ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 289 LDINDNEIDNVEVSRGYRG-----LRKLKSLD 315
           LD+ + E+ N+     YR      L +L  LD
Sbjct: 118 LDLFNCEVTNLN---DYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 78  LFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSL 137
           L   F++LE L      +        +  L +LN LK L+LS N  +  +     +  +L
Sbjct: 37  LTDEFEELEFLSTINVGL------TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 138 RSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKI 172
             L LS N+++    ++ L  L +L+ LD+   ++
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 205 SFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI--LSSVARLSSLT 262
           + ++++ L +  +  +   +    +    L  L       +  N  +  ++++ +L+ L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFL-------STINVGLTSIANLPKLNKLK 67

Query: 263 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
            L LS N +         +   NL  L+++ N+I ++      + L  LKSLDL  
Sbjct: 68  KLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 133 RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGT 192
             S ++ L L ++R          D   +LE L      +        L+KLK L LS  
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDN 74

Query: 193 GFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLC 247
              G  +V   +   NL  L++SGN+I +L     +E L +L  LK LDL     
Sbjct: 75  RVSGGLEV-LAEKCPNLTHLNLSGNKIKDL---STIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
              ++ L L  +      E +          L+ L        +  +++L +L+ L+ L 
Sbjct: 16  PSDVKELVLDNS---RSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLE 70

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF---MVSKGLSKLKSLGLSGTGFKGTF 198
           LSDNR+         +   +L  L++ GNKI         K L  LKSL L         
Sbjct: 71  LSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

Query: 199 DVRE--FDSFNNLEVLD 213
           D RE  F     L  LD
Sbjct: 130 DYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 694 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 753
           L L N++      + L      LEFLS  N  L     + +  L  L+ L L  N   G 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDNRVSGG 79

Query: 754 IPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKN 796
           +     KC +L  L L+ N +        L  L+ L+ + +   
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 12/141 (8%)

Query: 359 NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 418
             ++++ L LD+S  +   L+ +   F  L+ LS       G+ S    P    L+ L++
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN---VGLTSIANLPKLNKLKKLEL 71

Query: 419 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN-- 476
              R+   +  L+++ E  P+L +L+LSG+ +       ++  L  L +L+ L + N   
Sbjct: 72  SDNRV---SGGLEVLAEKCPNLTHLNLSGNKI--KDLSTIEP-LKKLENLKSLDLFNCEV 125

Query: 477 -DLRGSLPWCLANTTSLRILD 496
            +L             L  LD
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 282 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH 341
           + S+++EL ++++  +  ++        +L+ L    VG+      + ++     L  L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----IANLPKLNKLKKLE 70

Query: 342 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI--FPSLKNLSMSGCEV 398
           L  N  +  L    E     NL +L L  S   I  L +I  +    +LK+L +  CEV
Sbjct: 71  LSDNRVSGGLEVLAE--KCPNLTHLNL--SGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 430 LQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT 489
           L++   +   +K L L  S   +N  ++          L+ L   N  L  S+   L   
Sbjct: 9   LELRNRTPSDVKELVLDNS--RSNEGKLEG-LTDEFEELEFLSTINVGLT-SIA-NLPKL 63

Query: 490 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 549
             L+ L++S N+++            ++  L LS N  +   ++EPL     LK  D  N
Sbjct: 64  NKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 550 NEI 552
            E+
Sbjct: 123 CEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 736 SLRNLRWLLLEGNHF-VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794
           +  +++ L+L+ +    G++     +   L+ L   N  L+  I   L  L  L+ + + 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 795 KNHLEGPIPVEFCRLDSLQILDISDNNIS 823
            N + G + V   +  +L  L++S N I 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 832 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 891
           P  +K++ L  +  +    EG       L  L      L  SI + +  L++L  L L+ 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSD 73

Query: 892 NNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 921
           N + G + +   +   L  L+LS N +  L
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 409 HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHL 468
               ++ L +  +R   N   L+ + +    L++LS     L    + I    L  L  L
Sbjct: 15  TPSDVKELVLDNSRS--NEGKLEGLTDEFEELEFLSTINVGL----TSI--ANLPKLNKL 66

Query: 469 QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
           ++L + +N + G L        +L  L++S N++    +  PL  L +++ L L N 
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 25/110 (22%), Positives = 36/110 (32%), Gaps = 8/110 (7%)

Query: 638 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 697
             + L FL   N        +     L  L    +S N + G +         L  L+LS
Sbjct: 40  EFEELEFLSTINVGLTS---IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 698 NNKLTG-EIPDHLAMCCVNLEFLSLSNNSLKGHIFSR---IFSLRNLRWL 743
            NK+      + L     NL+ L L N  +      R      L  L +L
Sbjct: 97  GNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 27/110 (24%)

Query: 808 RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 867
             + L+ L   +  ++          SI  +                   + L  L+LS 
Sbjct: 40  EFEELEFLSTINVGLT----------SIANLP----------------KLNKLKKLELSD 73

Query: 868 NYLNGSIPDWIDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDN 916
           N ++G +    +    L+HLNL+ N ++       L +L  L+ LDL + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 988  LDLSCNKL--VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
            L      L  + ++P     L +++ L LS N ++G + +      ++  L+LS NK+ 
Sbjct: 47   LSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 856 NCSSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 914
             S +  L L  +  N G +    D   +L  L+  +  L   +   L +LN+L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 915 DNNLHGLIPSCFDN----TTLHESYNN 937
           DN + G +    +     T L+ S N 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNK 99

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 14/151 (9%)

Query: 170 NKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 229
            +I   + ++  + ++ L L                F NLE L +    + ++       
Sbjct: 12  RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV------S 65

Query: 230 RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEEL 289
            L +L KLKKL+L  N     +     +L +LT L+LS N L+     +    L  L+ L
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 290 DINDNEIDNVEVSRGYRG-----LRKLKSLD 315
           D+ + E+ N+     YR      L +L  LD
Sbjct: 126 DLFNCEVTNLN---DYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.9 bits (148), Expect = 8e-11
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 78  LFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSL 137
           L   F  LE L L    +        +  L +L  LK L+LS N     +     +L +L
Sbjct: 44  LTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 138 RSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKI 172
             L LS N+L+    ++ L  L  L+ LD+   ++
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 133 RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGT 192
             +++R L L + +              +LE L +    +        L KLK L LS  
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN 81

Query: 193 GFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI- 251
              G  D+   +   NL  L++SGN++ ++     LE L +L  LK LDL      N   
Sbjct: 82  RIFGGLDM-LAEKLPNLTHLNLSGNKLKDI---STLEPLKKLECLKSLDLFNCEVTNLND 137

Query: 252 --LSSVARLSSLTSL 264
              S    L  LT L
Sbjct: 138 YRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
              +  L L         + +     +   NL+ L L      +  +S+L +L  L+ L 
Sbjct: 23  PAAVRELVLDNC---KSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLE 77

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSL 187
           LS+NR+         + L +L  L++ GNK+      + L KL+ L
Sbjct: 78  LSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 38/134 (28%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 694 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 753
           L L N K      + L    VNLEFLSL N  L     S +  L  L+ L L  N   G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGG 86

Query: 754 IPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKN---HLEGPIPVEFCRL 809
           +     K  +L  L L+ N L        L  L+ L+ + +      +L       F  L
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 810 DSLQILDISDNNIS 823
             L  LD  D    
Sbjct: 147 PQLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 12/141 (8%)

Query: 359 NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 418
               +  L LD+   +   ++ + + F +L+ LS+    +  V      P    L+ L++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL 78

Query: 419 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN-- 476
              RI      L ++ E +P+L +L+LSG+ L       L+  L  L  L+ L + N   
Sbjct: 79  SENRI---FGGLDMLAEKLPNLTHLNLSGNKL--KDISTLEP-LKKLECLKSLDLFNCEV 132

Query: 477 -DLRGSLPWCLANTTSLRILD 496
            +L             L  LD
Sbjct: 133 TNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 282 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH 341
           + + + EL +++ + ++ ++         L+ L L  VG+      + ++   P L  L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----VSNLPKLPKLKKLE 77

Query: 342 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI--FPSLKNLSMSGCEV 398
           L  N     L    E     NL +L L  S   +  + ++  +     LK+L +  CEV
Sbjct: 78  LSENRIFGGLDMLAE--KLPNLTHLNL--SGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 831 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 890
            P +++++ L     +    EG      +L  L L    L  S+ + +  L +L  L L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 891 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 921
            N + G + +   +L  L  L+LS N L  +
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 16/127 (12%)

Query: 433 IGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSL 492
           +     +L++LSL    L      +    L  L  L++L +  N + G L        +L
Sbjct: 44  LTAEFVNLEFLSLINVGL----ISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 493 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP------LFNHSKLKIFD 546
             L++S N+L    +  PL  L  ++ L L N      V+              +L   D
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC----EVTNLNDYRESVFKLLPQLTYLD 153

Query: 547 AKNNEIN 553
             + E  
Sbjct: 154 GYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 10/107 (9%)

Query: 642 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 701
           L FL + N        V     LP L    +S N + G +      +  L  L+LS NKL
Sbjct: 51  LEFLSLINVGLIS---VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 702 T--GEIPDHLAMCCVNLEFLSLSNN---SLKGHIFSRIFSLRNLRWL 743
                + + L      L+ L L N    +L  +  S    L  L +L
Sbjct: 108 KDISTL-EPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 988  LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
            L L    L+  +   +  L +++ L LS N + G + +    L ++  L+LS NKL 
Sbjct: 54   LSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 64.3 bits (157), Expect = 7e-12
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 13/154 (8%)

Query: 115 MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDS-LRDLEELDIGGNKID 173
           M+ L+         +        R L L   ++     ++ L + L   + +D   N+I 
Sbjct: 1   MVKLTAELIEQ--AAQYTNAVRDRELDLRGYKIP---VIENLGATLDQFDAIDFSDNEIR 55

Query: 174 KFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 233
           K      L +LK+L ++        +     +  +L  L ++ N +  L     L+ L+ 
Sbjct: 56  KLDGFPLLRRLKTLLVNNNRICRIGEG-LDQALPDLTELILTNNSLVEL---GDLDPLAS 111

Query: 234 LSKLKKLDLRGNLCNNSI---LSSVARLSSLTSL 264
           L  L  L +  N   N     L  + ++  +  L
Sbjct: 112 LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 78  LFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSL 137
           L     Q +++D S N I        L+G   L  LK L ++ N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEI------RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 138 RSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKI 172
             L L++N L    D+  L SL+ L  L I  N +
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 41/183 (22%), Positives = 65/183 (35%), Gaps = 41/183 (22%)

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVR 201
           L+   +E      +  +     ELD+ G KI           +++LG             
Sbjct: 4   LTAELIE---QAAQYTNAVRDRELDLRGYKI---------PVIENLG------------- 38

Query: 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 261
              + +  + +D S NEI  L      +    L +LK L +  N            L  L
Sbjct: 39  --ATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 262 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG-----LRKLKSLDL 316
           T L L++N L    D     SL +L  L I  N + N +    YR      + +++ LD 
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLDF 147

Query: 317 SGV 319
             V
Sbjct: 148 QKV 150

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 683 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 742
           + + N +  + LDL   K+   I ++L       + +  S+N ++         LR L+ 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKT 68

Query: 743 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKN 796
           LL+  N               L  L L NN+L        L +LK L ++ + +N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 32/142 (22%)

Query: 229 ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 288
            + +   + ++LDLRG            ++  + +L                 +L   + 
Sbjct: 13  AQYTNAVRDRELDLRGY-----------KIPVIENLG---------------ATLDQFDA 46

Query: 289 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 348
           +D +DNEI  ++   G+  LR+LK+L ++   I    + L    + P L  L L +NN  
Sbjct: 47  IDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELIL-TNNSL 100

Query: 349 ATLTTTQELHNFTNLEYLTLDD 370
             L     L +  +L YL +  
Sbjct: 101 VELGDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 14/149 (9%)

Query: 351 LTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHF 410
           +    +  N      L L      I +++++G+       +  S    N +    GFP  
Sbjct: 9   IEQAAQYTNAVRDRELDLR--GYKIPVIENLGATLDQFDAIDFSD---NEIRKLDGFPLL 63

Query: 411 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 470
           + L+ L +   RI       + + +++P L  L L+ ++L       LD  L  L  L  
Sbjct: 64  RRLKTLLVNNNRI---CRIGEGLDQALPDLTELILTNNSL--VELGDLDP-LASLKSLTY 117

Query: 471 LYIDNN---DLRGSLPWCLANTTSLRILD 496
           L I  N   + +    + +     +R+LD
Sbjct: 118 LCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 435 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRI 494
            +    + L L G         +++     L     +   +N++R  L         L+ 
Sbjct: 16  TNAVRDRELDLRG-----YKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKT 68

Query: 495 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 552
           L V+ N++   I       L  + EL L+NN       L+PL +   L       N +
Sbjct: 69  LLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 814 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 873
           ++ ++   I          +  +++ L    +   + E           +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 874 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 921
           +  +   L +L  L + +N +          L  L  L L++N+L  L
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 736 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795
           +    R L L G   +  I    +       +  ++N +  K+      L+ L+ +++  
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 796 NHLEGPIPVEFCRLDSLQILDISDNNIS 823
           N +          L  L  L +++N++ 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 612 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 671
             N  +   L L    +     L   +  +   +D S+N  +    ++   +L  L    
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 672 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLT--GEIPDHLAMCCVNLEFLSLSNN---SL 726
           ++ N +          +  L  L L+NN L   G++ D LA    +L +L +  N   + 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRNPVTNK 128

Query: 727 KGHIFSRIFSLRNLRWL 743
           K +    I+ +  +R L
Sbjct: 129 KHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 979  GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 1038
            G  L     +D S N++          L R++TL +++N +          L  +  L L
Sbjct: 38   GATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

Query: 1039 SYNKLS 1044
            + N L 
Sbjct: 96   TNNSLV 101

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 16/121 (13%)

Query: 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----AR 257
           F  +  L  +D+S N+I  L           L  L  L L GN      ++ +       
Sbjct: 52  FSPYKKLRRIDLSNNQISEL--APDA--FQGLRSLNSLVLYGNK-----ITELPKSLFEG 102

Query: 258 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS 317
           L SL  L L+ N +   +    F  L NL  L + DN++  +     +  LR ++++ L+
Sbjct: 103 LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLA 160

Query: 318 G 318
            
Sbjct: 161 Q 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 39/165 (23%)

Query: 135 SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF 194
            ++  + L  N ++  I        + L  +D+  N+I +  ++                
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE--LAPDA------------- 75

Query: 195 KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSS 254
                   F    +L  L + GN+I  L  P+ L     L  L+ L L  N      ++ 
Sbjct: 76  --------FQGLRSLNSLVLYGNKITEL--PKSL--FEGLFSLQLLLLNANK-----INC 118

Query: 255 VAR-----LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
           +       L +L  L L  N LQ +I    F  L  ++ + +  N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 28/150 (18%)

Query: 208 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA-----RLSSLT 262
            +  + +  N I  +  P G    S   KL+++DL  N      +S +A      L SL 
Sbjct: 33  TITEIRLEQNTIKVI--PPGA--FSPYKKLRRIDLSNNQ-----ISELAPDAFQGLRSLN 83

Query: 263 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG-YRGLRKLKSLDLSGVGI 321
           SL L  N +   +    F+ L +L+ L +N N+I+ +      ++ L  L  L L     
Sbjct: 84  SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLR--VDAFQDLHNLNLLSLYD--- 137

Query: 322 RDGNKLLQ-SMGSF---PSLNTLHLESNNF 347
              NKL   + G+F    ++ T+HL  N F
Sbjct: 138 ---NKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 7/114 (6%)

Query: 832 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 890
           P +I ++ L +N +   +  G F     L  +DLS N ++  +      GL  L+ L L 
Sbjct: 31  PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88

Query: 891 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSS 940
            N +          L  LQLL L+ N ++ L    F +      L    N   +
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 19/146 (13%)

Query: 786 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNM 844
           KGL  I  P N     +P       ++  + +  N I    P  F P   ++++ LS N 
Sbjct: 21  KGLTEI--PTN-----LPE------TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ 67

Query: 845 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQL- 902
           +  +L    F    SL +L L  N +   +P  + +GL  L  L L  N +   + +   
Sbjct: 68  IS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAF 124

Query: 903 CRLNQLQLLDLSDNNLHGLIPSCFDN 928
             L+ L LL L DN L  +    F  
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSP 150

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 692 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 750
             + L  N +   IP         L  + LSNN +   +    F  LR+L  L+L GN  
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 751 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPVEFCRL 809
                       SL+ L LN N ++  +      +L  L  + +  N L+      F  L
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 810 DSLQILDISDN 820
            ++Q + ++ N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDS 811
           EIP +L    ++  + L  N +    P      K L+ I +  N +   +  + F  L S
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRS 81

Query: 812 LQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 869
           L  L +  N I+  LP   F  L S++ + L+ N ++  L+   F +  +L  L L  N 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 870 LNGSIPDWI-DGLSQLSHLNLAHN 892
           L  +I       L  +  ++LA N
Sbjct: 140 LQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 37/174 (21%), Positives = 60/174 (34%), Gaps = 44/174 (25%)

Query: 86  ESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA-----RLSSLRSL 140
             + L  N I            S    L+ +DLS     NN +S LA      L SL SL
Sbjct: 35  TEIRLEQNTIKVIPPGA----FSPYKKLRRIDLS-----NNQISELAPDAFQGLRSLNSL 85

Query: 141 YLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDV 200
            L  N++   +     + L  L+ L +  N            K+  L             
Sbjct: 86  VLYGNKIT-ELPKSLFEGLFSLQLLLLNAN------------KINCLR------VDA--- 123

Query: 201 REFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNL--CNNSIL 252
             F   +NL +L +  N++    + +G    S L  ++ + L  N   C+  + 
Sbjct: 124 --FQDLHNLNLLSLYDNKLQT--IAKGT--FSPLRAIQTMHLAQNPFICDCHLK 171

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 35/187 (18%), Positives = 58/187 (31%), Gaps = 59/187 (31%)

Query: 858  SSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSD 915
             ++  + L  N +   IP        +L  ++L++N +  E+       L  L  L L  
Sbjct: 32   ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 916  NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 975
            N +  L  S F+                                                
Sbjct: 90   NKITELPKSLFEG----------------------------------------------- 102

Query: 976  AYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 1034
                  L  L  L L+ NK+   +      +L  +  L+L  N L      TFS LR I+
Sbjct: 103  ------LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 1035 SLDLSYN 1041
            ++ L+ N
Sbjct: 156  TMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 436 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRI 494
               L+ + LS + +   +          L  L  L +  N +   LP        SL++
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQG----LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108

Query: 495 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 528
           L ++ N++   +       L ++  L L +N  +
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 14/120 (11%)

Query: 637 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS-FGNVIFLQFLD 695
             +K+LR +D+SNN     +  +    L SL    +  N +   +P S F  +  LQ L 
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 696 LSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 750
           L+ NK+   +       L     NL  LSL +N L+  I    F  LR ++ + L  N F
Sbjct: 111 LNANKIN-CLRVDAFQDLH----NLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
            ++T + L  N ++  I    F     L  +D+++N+I  +     ++GLR L SL L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLY- 88

Query: 319 VGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHN--FTNLEYLTLDDS 371
                GNK +  +    F    SL  L L +N           L    F +L  L L   
Sbjct: 89  -----GNK-ITELPKSLFEGLFSLQLLLLNANKI-------NCLRVDAFQDLHNLNL--L 133

Query: 372 SLHISLLQSI-GSIFPSLKNLS 392
           SL+ + LQ+I    F  L+ + 
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQ 155

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 21/127 (16%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSL-- 131
           +    F+P+++L  +DLS N I+  A +        L +L  L L       N ++ L  
Sbjct: 47  IPPGAFSPYKKLRRIDLSNNQISELAPD----AFQGLRSLNSLVL-----YGNKITELPK 97

Query: 132 ---ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKG----LSKL 184
                L SL+ L L+ N++   + V     L +L  L +  NK+    ++KG    L  +
Sbjct: 98  SLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT--IAKGTFSPLRAI 154

Query: 185 KSLGLSG 191
           +++ L+ 
Sbjct: 155 QTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 14/134 (10%)

Query: 645 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTG 703
           + +  N  +  IP         L   ++S N +   +   +F  +  L  L L  NK+T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 704 EIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSL 758
           E+P    + L     +L+ L L+ N +   +    F  L NL  L L  N        + 
Sbjct: 94  ELPKSLFEGL----FSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 759 SKCSSLKGLYLNNN 772
           S   +++ ++L  N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 982  LSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 1040
            L  L  L L  NK+   +P  +   L  +Q L L+ N +       F +L ++  L L  
Sbjct: 79   LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 1041 NKLS 1044
            NKL 
Sbjct: 138  NKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 16/130 (12%)

Query: 402 LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE----SMPSLKYLSLSGSTLGTNSSRI 457
           +    F  +K L  +D       L+ + +  +       + SL  L L G+ +      +
Sbjct: 47  IPPGAFSPYKKLRRID-------LSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99

Query: 458 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
            +     L  LQ L ++ N +         +  +L +L +  N+L  +I+      L +I
Sbjct: 100 FEG----LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAI 154

Query: 518 EELRLSNNHF 527
           + + L+ N F
Sbjct: 155 QTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 988  LDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLS 1044
            + L  N +   IPP       +++ ++LS+N ++  +    F  LR + SL L  NK++
Sbjct: 37   IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 38/165 (23%)

Query: 135 SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF 194
                L L++N             L  L +++   NKI    + +G              
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGA------------- 76

Query: 195 KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSS 254
                   F+  + +  + ++ N ++N+     +     L  LK L LR N      ++ 
Sbjct: 77  --------FEGASGVNEILLTSNRLENV--QHKM--FKGLESLKTLMLRSNR-----ITC 119

Query: 255 V-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
           V       LSS+  L L  N +  ++    FD+L +L  L++  N
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 27/150 (18%)

Query: 208 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLT 262
               L ++ NE   L   +      +L +L+K++   N      ++ +        S + 
Sbjct: 33  YTAELRLNNNEFTVL---EATGIFKKLPQLRKINFSNNK-----ITDIEEGAFEGASGVN 84

Query: 263 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 322
            + L+ N L+ ++  K F  L +L+ L +  N I  V  +  + GL  ++ L L      
Sbjct: 85  EILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVG-NDSFIGLSSVRLLSL------ 136

Query: 323 DGNKLLQSM--GSF---PSLNTLHLESNNF 347
             N++  ++  G+F    SL+TL+L +N F
Sbjct: 137 YDNQI-TTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 18/146 (12%)

Query: 786 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPLS-IKQVHLSKN 843
           + L  I  P++     IP           L +++N  +    +  F  L  +++++ S N
Sbjct: 21  QKLNKI--PEH-----IPQ------YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN 67

Query: 844 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQL 902
            +   ++EG F   S +  + L+ N L  ++   +  GL  L  L L  N +        
Sbjct: 68  KIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125

Query: 903 CRLNQLQLLDLSDNNLHGLIPSCFDN 928
             L+ ++LL L DN +  + P  FD 
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 39/164 (23%)

Query: 112 NLKMLDLSGNAFNN-NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGN 170
               L L+ N F          +L  LR +  S+N++   I+    +    + E+ +  N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91

Query: 171 KIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLER 230
                       +L+++             + F    +L+ L +  N I  +        
Sbjct: 92  ------------RLENV-----------QHKMFKGLESLKTLMLRSNRITCV--GNDS-- 124

Query: 231 LSRLSKLKKLDLRGNLCNNSILSSVA-----RLSSLTSLHLSHN 269
              LS ++ L L  N      +++VA      L SL++L+L  N
Sbjct: 125 FIGLSSVRLLSLYDNQ-----ITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 17/139 (12%)

Query: 86  ESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSL-----ARLSSLRSL 140
             L L+ N        E      +L  L+ ++ S     NN ++ +        S +  +
Sbjct: 35  AELRLNNNEF---TVLEATGIFKKLPQLRKINFS-----NNKITDIEEGAFEGASGVNEI 86

Query: 141 YLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFM--VSKGLSKLKSLGLSGTGFKGTF 198
            L+ NRLE ++  K    L  L+ L +  N+I         GLS ++ L L       T 
Sbjct: 87  LLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TV 144

Query: 199 DVREFDSFNNLEVLDMSGN 217
               FD+ ++L  L++  N
Sbjct: 145 APGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 832 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 890
           P    ++ L+ N        G F     L  ++ S N +   I +   +G S ++ + L 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 891 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSS 940
            N LE         L  L+ L L  N +  +    F        L    N  ++
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 2/130 (1%)

Query: 692 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 750
             L L+NN+ T      +      L  ++ SNN +   I    F     +  +LL  N  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 751 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 810
                +      SLK L L +N ++         L  ++ + +  N +    P  F  L 
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 811 SLQILDISDN 820
           SL  L++  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 645 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 704
           L ++NN F       I   LP L   N S N +      +F     +  + L++N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 705 IP----DHLAMCCVNLEFLSLSNN---SLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 757
           +       L     +L+ L L +N    +    F     L ++R L L  N      P +
Sbjct: 96  VQHKMFKGL----ESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQITTVAPGA 148

Query: 758 LSKCSSLKGLYLNNN 772
                SL  L L  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 767 LYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 825
           L LNNN  +          L  L+ I    N +       F     +  + ++ N +  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 826 LPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLS 882
           +    F  L S+K + L  N +   +   +F   SS+  L L  N +  ++     D L 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 883 QLSHLNLAHN 892
            LS LNL  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 8/152 (5%)

Query: 695 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGE 753
           D SN KL  +IP+H+         L L+NN       + IF  L  LR +    N     
Sbjct: 17  DCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72

Query: 754 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSL 812
              +    S +  + L +N L     +    L+ L+ +++  N +   +  + F  L S+
Sbjct: 73  EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSV 131

Query: 813 QILDISDNNISGSLPSCFYPL-SIKQVHLSKN 843
           ++L + DN I+   P  F  L S+  ++L  N
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 21/124 (16%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSL----- 131
            +F    QL  ++ S N I    E          + +  + L+ N      L ++     
Sbjct: 51  GIFKKLPQLRKINFSNNKITDIEEG----AFEGASGVNEILLTSNR-----LENVQHKMF 101

Query: 132 ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKG----LSKLKSL 187
             L SL++L L  NR+   +       L  +  L +  N+I    V+ G    L  L +L
Sbjct: 102 KGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFDTLHSLSTL 158

Query: 188 GLSG 191
            L  
Sbjct: 159 NLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 23/155 (14%)

Query: 247 CNNSILSSV-ARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 304
           C+N  L+ +   +      L L++N          F  L  L +++ ++N+I ++E    
Sbjct: 18  CSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG-A 76

Query: 305 YRGLRKLKSLDLSGVGIRDGNKL--LQSMGSF---PSLNTLHLESNNFTATLTTTQELHN 359
           + G   +  + L+       N+L  +Q    F    SL TL L SN  T     +     
Sbjct: 77  FEGASGVNEILLT------SNRLENVQH-KMFKGLESLKTLMLRSNRITCVGNDS--FIG 127

Query: 360 FTNLEYLTLDDSSLHISLLQSI-GSIFPSLKNLSM 393
            +++  L     SL+ + + ++    F +L +LS 
Sbjct: 128 LSSVRLL-----SLYDNQITTVAPGAFDTLHSLST 157

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 982  LSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 1040
             S +  + L+ N+L   +  ++   L  ++TL L  N +T     +F  L  +  L L  
Sbjct: 80   ASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

Query: 1041 NKLSGKIPR----QLVDLNTLAIF 1060
            N+++  +       L  L+TL + 
Sbjct: 139  NQIT-TVAPGAFDTLHSLSTLNLL 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 19/104 (18%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLEG--LSRLNNLKMLDLSGNAFNNNVLSSL 131
           +    F     +  + L+ N +      E ++      L +LK L L      +N ++ +
Sbjct: 72  IEEGAFEGASGVNEILLTSNRL------ENVQHKMFKGLESLKTLML-----RSNRITCV 120

Query: 132 -----ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGN 170
                  LSS+R L L DN++  ++     D+L  L  L++  N
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 988  LDLSCNKLVGHIPPQIG--NLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 1045
            L L+ N+    +        L +++ +N S+N +T      F     +  + L+ N+L  
Sbjct: 37   LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 1046 KIP----RQLVDLNTL 1057
             +     + L  L TL
Sbjct: 96   -VQHKMFKGLESLKTL 110

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 3e-11
 Identities = 81/466 (17%), Positives = 156/466 (33%), Gaps = 123/466 (26%)

Query: 92  WNNIAGCAENEGLEGLSRLNNL-KMLDLSGNAFNNNVLSSLARLSSLR---SLYLSDNRL 147
           W N+  C   E +  L  L  L   +D +  + +++  +   R+ S++      L     
Sbjct: 186 WLNLKNCNSPETV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 148 EGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFN 207
           E  + V  L ++++ +         + F +S    K+    L  T FK   D     +  
Sbjct: 244 ENCLLV--LLNVQNAKA-------WNAFNLS---CKI----LLTTRFKQVTDFLSAATTT 287

Query: 208 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS--ILSSV-ARLSSLTS- 263
           ++ +   S      L   +    L +    +  DL   +   +   LS +   +    + 
Sbjct: 288 HISLDHHS----MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 264 ----LHLSHNILQGSIDAKEFDSLSNLEELDINDN----EI--DNVEVSRGYRGLRKLKS 313
                H++ + L   I++    SL+ LE  +         +   +  +         L  
Sbjct: 344 WDNWKHVNCDKLTTIIES----SLNVLEPAEYRKMFDRLSVFPPSAHIP-----TILLSL 394

Query: 314 L--DLSGVGIRD-GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTL-- 368
           +  D+    +    NKL +      SL    +E     +T++    + +     YL L  
Sbjct: 395 IWFDVIKSDVMVVVNKLHKY-----SL----VEKQPKESTIS----IPSI----YLELKV 437

Query: 369 ---DDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP----HFKSLEHLDM--R 419
              ++ +LH S++      +   K            L    +     H K++EH +    
Sbjct: 438 KLENEYALHRSIVDH----YNIPKTFDSDDLIPP-YLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 420 FARIALNTSFLQ--IIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQEL-----Y 472
           F  + L+  FL+  I  +S       + SGS L T               LQ+L     Y
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTA----WNASGSILNT---------------LQQLKFYKPY 533

Query: 473 I-DN--------NDLRGSLPWC---LANTTSLRILDVSFNQLTGSI 506
           I DN        N +   LP     L  +    +L ++      +I
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 6e-08
 Identities = 73/478 (15%), Positives = 144/478 (30%), Gaps = 119/478 (24%)

Query: 543 KIFDAKNNEIN----GEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 598
           K+    + +I        N   ++    Q     +  N+         +  +    +AEL
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 599 SHIKMIGEFPNWL--LENNTKLEFLYLVNDS-LAGPFRLPIHSHKRLRFLDVSNNNFQGH 655
             +     + N L  L N         V ++     F L        + L  +       
Sbjct: 235 RRLLKSKPYENCLLVLLN---------VQNAKAWNAFNL------SCKILLTTRF----- 274

Query: 656 IPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVN 715
              ++ D L +    +IS++    ++       + L++LD     L  E      +   N
Sbjct: 275 --KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE------VLTTN 326

Query: 716 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS--LKGLYLN--- 770
              LS+   S++  +           W  +  +     I  SL+       + ++     
Sbjct: 327 PRRLSIIAESIRDGL------ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 771 -NNNLSGKIPR------WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 823
              +    IP       W   +K    +V+           +  +  SL  ++      +
Sbjct: 381 FPPSA--HIPTILLSLIWFDVIKSDVMVVV----------NKLHKY-SL--VEKQPKEST 425

Query: 824 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL-----NGSIPDWI 878
            S+PS +  L +K  +     LH  + +               YN       +  IP ++
Sbjct: 426 ISIPSIYLELKVKLENEYA--LHRSIVD--------------HYNIPKTFDSDDLIPPYL 469

Query: 879 DG--LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF-DNTTLHESY 935
           D    S + H    H  L+     +   L ++  LD             F +    H+S 
Sbjct: 470 DQYFYSHIGH----H--LKNIEHPERMTLFRMVFLDFR-----------FLEQKIRHDST 512

Query: 936 NNNSSPD--------KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 985
             N+S          K +K     + P+   E+ +  I +F  K        +   LL
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPK--YERLVNAILDFLPKIEENLICSKYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-05
 Identities = 49/330 (14%), Positives = 97/330 (29%), Gaps = 97/330 (29%)

Query: 863  LDLSYNYLNGSI------PDWIDGLSQLSHLNLAHNNLEGEVPIQLCR---LNQLQ--LL 911
            L ++Y +L   I      P  +     +   +  +N+ +      + R     +L+  LL
Sbjct: 87   LRINYKFLMSPIKTEQRQPS-MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 912  DLSDNN---LHGL---------IPSCFDNTTLHE--------SYNNNSSP---------- 941
            +L       + G+         +  C       +        +  N +SP          
Sbjct: 146  ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 942  ----DKPFKT----SFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL------SLLAG 987
                D  + +    S +I     S++ ++  + +             VL           
Sbjct: 206  LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL----VLLNVQNAKAWNA 261

Query: 988  LDLSCNKLVGHIPPQIGNLTR-IQTLNLSHNNLTGTIPLTFSN--LRHIESLDLSYNKLS 1044
             +LSC  L+          TR  Q  +      T  I L   +  L   E   L    L 
Sbjct: 262  FNLSCKILL---------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 1045 ---GKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICR 1101
                 +PR+++  N   + I+A       I +  A +  +   + D              
Sbjct: 313  CRPQDLPREVLTTNPRRLSIIA-----ESIRDGLATWDNWKHVNCD-------------- 353

Query: 1102 SLATMSEASTSNEGDDNLIDMDSFFITFTI 1131
             L T+ E+S +        +    F   ++
Sbjct: 354  KLTTIIESSLNVLEPA---EYRKMFDRLSV 380

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 43/188 (22%)

Query: 114 KMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKID 173
           + LDL          ++   L+ L  L L  N+L+ ++     D L +L  L +  N   
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN--- 93

Query: 174 KFMVSKGLSKLKSL--GLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERL 231
                    +L SL  G+             FD    L+ L + GN++ +L  P G+   
Sbjct: 94  ---------QLASLPLGV-------------FDHLTQLDKLYLGGNQLKSL--PSGV--F 127

Query: 232 SRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNL 286
            RL+KLK+L L  N      L S+      +L++L +L LS N LQ S+    FD L  L
Sbjct: 128 DRLTKLKELRLNTNQ-----LQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKL 181

Query: 287 EELDINDN 294
           + + +  N
Sbjct: 182 QTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 796 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGT 853
             L       F  L  L  L++  N +  +L +  F  L  +  + L+ N L   L  G 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGV 102

Query: 854 FFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLL 911
           F + + L  L L  N L  S+P  + D L++L  L L  N L+  +P     +L  LQ L
Sbjct: 103 FDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160

Query: 912 DLSDNNLHGLIPSCFDN 928
            LS N L  +    FD 
Sbjct: 161 SLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 45/158 (28%), Positives = 63/158 (39%), Gaps = 25/158 (15%)

Query: 675 NALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFLSLSNNSLKGHIF 731
             L     ++F  +  L +L+L  N+L      + D L      L  L L+NN L   + 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL----TELGTLGLANNQLAS-LP 99

Query: 732 SRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPRWLG-- 783
             +F  L  L  L L GN       +SL      + + LK L LN N L   IP   G  
Sbjct: 100 LGVFDHLTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKELRLNTNQLQ-SIPA--GAF 151

Query: 784 -NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 820
             L  LQ + +  N L+      F RL  LQ + +  N
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 22/161 (13%)

Query: 238 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 297
           +KLDL+         ++   L+ LT L+L +N LQ ++ A  FD L+ L  L + +N++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 298 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM--GSFPS---LNTLHLESNNFTATLT 352
           ++     +  L +L  L L       GN+ L+S+  G F     L  L L +N   +   
Sbjct: 97  SLP-LGVFDHLTQLDKLYLG------GNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148

Query: 353 TTQELHNFTNLEYLTLDDSSLHISLLQSI-GSIFPSLKNLS 392
                  F  L  L     SL  + LQS+    F  L  L 
Sbjct: 149 GA-----FDKLTNLQ--TLSLSTNQLQSVPHGAFDRLGKLQ 182

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 813 QILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 871
           + LD+    ++    + F  L+ +  ++L  N L   L  G F + + L TL L+ N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 872 GSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN- 928
            S+P  + D L+QL  L L  N L+  +P  +  RL +L+ L L+ N L  +    FD  
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154

Query: 929 ---TTLHESYNNNSS-PDKPF 945
               TL  S N   S P   F
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAF 175

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 51/188 (27%), Positives = 72/188 (38%), Gaps = 41/188 (21%)

Query: 714 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLY 768
            + E L L +  L     +    L  L WL L+ N       Q+LS       + L  L 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLG 89

Query: 769 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 828
           L NN L+  +P  +                       F  L  L  L +  N +  SLPS
Sbjct: 90  LANNQLA-SLPLGV-----------------------FDHLTQLDKLYLGGNQLK-SLPS 124

Query: 829 -CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLS 885
             F  L  +K++ L+ N L   +  G F   ++L TL LS N L  S+P    D L +L 
Sbjct: 125 GVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQ 182

Query: 886 HLNLAHNN 893
            + L   N
Sbjct: 183 TITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 48/184 (26%), Positives = 69/184 (37%), Gaps = 39/184 (21%)

Query: 863  LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 922
            LDL    L         GL++L+ LNL +N L+         L +L  L L++N L  L 
Sbjct: 40   LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 923  PSCFDNTT----LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ 978
               FD+ T    L+   N   S             P G  ++                  
Sbjct: 100  LGVFDHLTQLDKLYLGGNQLKSL------------PSGVFDR------------------ 129

Query: 979  GRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037
               L+ L  L L+ N+L   IP      LT +QTL+LS N L       F  L  ++++ 
Sbjct: 130  ---LTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 1038 LSYN 1041
            L  N
Sbjct: 186  LFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 16/170 (9%)

Query: 361 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV--LSGQGFPHFKSLEHLDM 418
            + E L L  + L         + F  L  L+    + N +  LS   F     L  L +
Sbjct: 35  ADTEKLDLQSTGLA----TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90

Query: 419 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 478
              ++    S    + + +  L  L L G+ L +  S + D+    L  L+EL ++ N L
Sbjct: 91  ANNQL---ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR----LTKLKELRLNTNQL 143

Query: 479 RGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 527
           + S+P       T+L+ L +S NQL  S+       L  ++ + L  N F
Sbjct: 144 Q-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 832 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 890
           P   +++ L    L   L + TF   + L  L+L YN L  ++   + D L++L  L LA
Sbjct: 34  PADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLA 91

Query: 891 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYN 936
           +N L          L QL  L L  N L  L    FD       L  + N
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 436 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP-WCLANTTSLRI 494
            +  L +L+L  + L T S+ + D     L  L  L + NN L  SLP     + T L  
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAGVFDD----LTELGTLGLANNQLA-SLPLGVFDHLTQLDK 111

Query: 495 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 528
           L +  NQL  S+ S     LT ++ELRL+ N  +
Sbjct: 112 LYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 63.2 bits (153), Expect = 1e-10
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSGKIPRW-LGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 811
           +    L    +L  LY+ N      +    L  L  L+++ + K+ L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 812 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 846
           L  L++S N +          LS++++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 4e-09
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 10/107 (9%)

Query: 245 NLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 304
                  L  +    +LT L++ +      ++ ++   L  L  L I  + +  V     
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDA 75

Query: 305 YRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSF--PSLNTLHLESNNFT 348
           +    +L  L+LS       N L   S  +    SL  L L  N   
Sbjct: 76  FHFTPRLSRLNLS------FNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 4e-08
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 980  RVLSLLAGLDLSCNKLVGHIPPQ-IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 1038
                 L  L +   + + H+  + +  L  ++ L +  + L    P  F     +  L+L
Sbjct: 28   PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87

Query: 1039 SYNKLSGKIPRQLVDLNTLAIFIVAYNNL 1067
            S+N L   +  + V   +L   +++ N L
Sbjct: 88   SFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 5e-08
 Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 460 QGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 518
             L    +L ELYI+N      L    L     LR L +  + L   ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 519 ELRLSNNHFRIPVSLEP-LFNHSKLKIFDAKNNEIN 553
            L LS N      SL         L+      N ++
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 1e-07
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 999  IPPQIGNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 1057
                +     +  L + +      + L     L  + +L +  + L    P        L
Sbjct: 23   SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 1058 AIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 1093
            +   +++N L   +   T Q  +  +    GNP  C
Sbjct: 83   SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 858 SSLVTLDLSYNYLNGSIPDW-IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 916
            +L  L +        +    + GL +L +L +  + L    P       +L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 917 NLHGLIPSCFDNTTLHESY-NNNS 939
            L  L        +L E   + N 
Sbjct: 91  ALESLSWKTVQGLSLQELVLSGNP 114

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 1e-06
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 3/96 (3%)

Query: 680 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LR 738
                      L  L + N +    +          L  L++  + L+  +    F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 739 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 774
            L  L L  N     +     +  SL+ L L+ N L
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 2e-06
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 12/155 (7%)

Query: 436 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 495
              +L  L +       +   +  + L  L  L+ L I  + LR   P     T  L  L
Sbjct: 29  GAENLTELYIEN---QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 496 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-------IPVSLEPLFNHSKLKIFDAK 548
           ++SFN L  S+S   +  L S++EL LS N          +    E        +     
Sbjct: 86  NLSFNALE-SLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCH 143

Query: 549 NNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 583
                  +  +    P  +++  + S + GD V  
Sbjct: 144 GQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLL 178

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 4e-06
 Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 104 LEGLSRLNNLKMLDLSGNAFNNNVLSSL-----ARLSSLRSLYLSDNRLEGSIDVKELDS 158
           L  L    NL  L +     N   L  L       L  LR+L +  + L   +       
Sbjct: 24  LHHLPGAENLTELYIE----NQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHF 78

Query: 159 LRDLEELDIGGNKI 172
              L  L++  N +
Sbjct: 79  TPRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 6e-06
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 17/107 (15%)

Query: 197 TFDVREFDSFNNLEVLDMSGN-EIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV 255
              +       NL  L +     + +L     L  L  L +L+ L +  +      L  V
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSG-----LRFV 71

Query: 256 AR-----LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 297
           A         L+ L+LS N L+ S+  K    LS L+EL ++ N + 
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 7e-06
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 1/113 (0%)

Query: 807 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866
           C       L  + +    SL       ++ ++++        L+         L  L + 
Sbjct: 5   CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 867 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 919
            + L    PD      +LS LNL+ N LE  +  +  +   LQ L LS N LH
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR----- 133
               + L  L +         E   L GL  L NL +          + L  +A      
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI--------VKSGLRFVAPDAFHF 78

Query: 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGN 170
              L  L LS N LE S+  K +  L  L+EL + GN
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 6e-05
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 640 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 699
           + L  L + N     H+ +     L  L    I  + L    P +F     L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 700 KLTGEIPDHLAMCCVNLEFLSLSNNSL 726
            L       +    ++L+ L LS N L
Sbjct: 91  ALESLSWKTVQG--LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 8e-05
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 30/129 (23%)

Query: 126 NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLK 185
           + L  L    +L  LY+ + +    +++++L  L +L  L I  + +    V+       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDA---- 75

Query: 186 SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 245
                            F     L  L++S N +++L   + ++ LS    L++L L GN
Sbjct: 76  -----------------FHFTPRLSRLNLSFNALESL-SWKTVQGLS----LQELVLSGN 113

Query: 246 --LCNNSIL 252
              C+ ++ 
Sbjct: 114 PLHCSCALR 122

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 9e-05
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 857 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSD 915
                 L  + +         + G   L+ L + +      + ++ L  L +L+ L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 916 NNLHGLIPSCFDN----TTLHESYNNNSS-PDKPFK 946
           + L  + P  F      + L+ S+N   S   K  +
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 11/137 (8%)

Query: 161 DLEELDIGGNKIDK--FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNE 218
           + + L +  N+I K    V   L  LK L L          V  FDS   L VLD+  N+
Sbjct: 41  NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQ 99

Query: 219 IDNLVVPQGLERLSRLSKLKKLDLRGN-LCNNSILSSVARLSSLTSLHLSHNILQGSIDA 277
           +  L  P  +    RL  LK+L +  N L    +   + RL+ LT L L  N L+ SI  
Sbjct: 100 LTVL--PSAV--FDRLVHLKELFMCCNKL--TELPRGIERLTHLTHLALDQNQLK-SIPH 152

Query: 278 KEFDSLSNLEELDINDN 294
             FD LS+L    +  N
Sbjct: 153 GAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 675 NALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFLSLSNNSLKGHIF 731
           N +    P  F ++I L+ L L +N+L      + D L      L  L L  N L   + 
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQLTV-LP 104

Query: 732 SRIF-SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 790
           S +F  L +L+ L +  N    E+P+ + + + L  L L+ N L          L  L H
Sbjct: 105 SAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163

Query: 791 I 791
            
Sbjct: 164 A 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 813 QILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 871
           QIL + DN I+   P  F  L  +K+++L  N L   L  G F + + L  LDL  N L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 872 GSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928
             +P  + D L  L  L +  N L  E+P  + RL  L  L L  N L  +    FD 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 45/156 (28%), Positives = 64/156 (41%), Gaps = 29/156 (18%)

Query: 114 KMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKID 173
           ++L L  N            L +L+ LYL  N+L  ++ V   DSL  L  LD+G N   
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN--- 98

Query: 174 KFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 233
                    +L  L               FD   +L+ L M  N++  L  P+G+E   R
Sbjct: 99  ---------QLTVL-----------PSAVFDRLVHLKELFMCCNKLTEL--PRGIE---R 133

Query: 234 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHN 269
           L+ L  L L  N   +    +  RLSSLT  +L  N
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 796 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGT 853
           N +    P  F  L +L+ L +  N +  +LP   F  L  +  + L  N L   L    
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAV 107

Query: 854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 913
           F     L  L +  N L   +P  I+ L+ L+HL L  N L+        RL+ L    L
Sbjct: 108 FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166

Query: 914 SDN 916
             N
Sbjct: 167 FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 42/180 (23%), Positives = 53/180 (29%), Gaps = 56/180 (31%)

Query: 863  LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGL 921
            L L  N +    P   D L  L  L L  N L   +P+ +   L QL +LDL  N L  L
Sbjct: 45   LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 922  IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 981
              + F               D+                                      
Sbjct: 104  PSAVF---------------DR-------------------------------------- 110

Query: 982  LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041
            L  L  L + CNKL   +P  I  LT +  L L  N L       F  L  +    L  N
Sbjct: 111  LVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 13/112 (11%)

Query: 238 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 297
           + L L  N            L +L  L+L  N L  ++    FDSL+ L  LD+  N++ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 298 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM----GSFPSLNTLHLESN 345
            +  S  +  L  LK L +        NK L  +         L  L L+ N
Sbjct: 102 VLP-SAVFDRLVHLKELFM------CCNK-LTELPRGIERLTHLTHLALDQN 145

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 60.7 bits (146), Expect = 1e-09
 Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 25/185 (13%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA--R 133
           + +      L +L +   N           G     NLK L++      ++V+  +    
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSI-------GKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTG 193
           L +L  L               L    +    D   N             LK LG+    
Sbjct: 218 LPNLEKL--------------VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263

Query: 194 F--KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI 251
                     E D    LE +D+S   + +      L+ + ++  LK ++++ N  ++ +
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323

Query: 252 LSSVA 256
              + 
Sbjct: 324 KKELQ 328

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 58.4 bits (140), Expect = 5e-09
 Identities = 33/195 (16%), Positives = 65/195 (33%), Gaps = 19/195 (9%)

Query: 284 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLE 343
               ++D  + EI  +E       L  +    L+ + I+  N L       P+L +L + 
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLDAMP--LLNNLKIKGTNNLSIGKKPRPNLKSLEII 201

Query: 344 SNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS 403
           S     ++       +  NLE L L            +    P                 
Sbjct: 202 SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK------------- 248

Query: 404 GQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 463
                 F +L+ L +  A        + +  + +P L+ + +S   L    +R+L   + 
Sbjct: 249 ----DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304

Query: 464 PLAHLQELYIDNNDL 478
            + HL+ + +  N L
Sbjct: 305 KIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 5e-06
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 839  HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 898
             + +N       EG F+        ++S+      +   +D +  L++L +   N     
Sbjct: 130  GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ-VDLSPVLDAMPLLNNLKIKGTNNLSIG 188

Query: 899  PIQLCRLNQLQLL--DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQG 956
                  L  L+++   L D+ +  ++ S   N      Y                     
Sbjct: 189  KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED---------------- 232

Query: 957  SVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN---LTRIQTLN 1013
                     F+         +       L  L +   +    +         L +++T++
Sbjct: 233  -------YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285

Query: 1014 LSHNNLTGT----IPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 1053
            +S   LT      +      ++H++ +++ YN LS ++ ++L  
Sbjct: 286  ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.8 bits (115), Expect = 6e-06
 Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 19/175 (10%)

Query: 156 LDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDS--FNNLEVLD 213
           LD++  L  L I G         K    LKSL +  +G      V +       NLE L 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSI-GKKPRPNLKSLEII-SGGLPDSVVEDILGSDLPNLEKLV 225

Query: 214 MSGNEIDNLVVPQGLERLS------RLSKLKKLDLRGNLCNNSILSSVAR---LSSLTSL 264
           +    +++      +          R   LK L +      N ++        L  L ++
Sbjct: 226 LYVG-VEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284

Query: 265 HLSHNILQGSIDAKEF----DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLD 315
            +S  +L     A+      D + +L+ +++  N + +       + L     + 
Sbjct: 285 DISAGVL-TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 9e-06
 Identities = 22/179 (12%), Positives = 60/179 (33%), Gaps = 15/179 (8%)

Query: 361 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 420
                +  ++  +       +  +  ++  L+    +    LS    P   +L+ L++  
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPR-PNLKSLEIIS 202

Query: 421 ARIALNTSFLQIIGES-MPSLKYLSLSGST---LGTNSSRILDQGLCP--LAHLQELYID 474
             +    S ++ I  S +P+L+ L L              +           +L+ L I 
Sbjct: 203 GGL--PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260

Query: 475 NNDLRGSLPWCLANT---TSLRILDVSFNQLT---GSISSSPLVHLTSIEELRLSNNHF 527
           + + +  +      +     L  +D+S   LT     +    +  +  ++ + +  N+ 
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 3e-05
 Identities = 32/215 (14%), Positives = 68/215 (31%), Gaps = 37/215 (17%)

Query: 573 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF 632
           +  N      F    +   + +E E+S I+ +   P  +L+    L  L +         
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP--VLDAMPLLNNLKI---KGTNNL 185

Query: 633 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGD-ILPSL----VYFNISMNALDGSIPS---- 683
            +       L+ L++ +      +  +I    LP+L    +Y  +     DG +      
Sbjct: 186 SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245

Query: 684 -SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV--NLEFLSLSNNSLKGHIFSRIFSLRNL 740
            S      L++L + + +    + +      +   LE + +S   L              
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL-------------- 291

Query: 741 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS 775
                  +     +   + K   LK + +  N LS
Sbjct: 292 ------TDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 9e-05
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 15/198 (7%)

Query: 207 NNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHL 266
                +D    EI  +        L  +  L  L ++     N++        +L SL +
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK---GTNNLSIGKKPRPNLKSLEI 200

Query: 267 SHNILQGSIDAKEFDS-LSNLEELDIN--------DNEIDNVEVSRGYRGLRKLKSLDLS 317
               L  S+      S L NLE+L +         D +++             LK L + 
Sbjct: 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260

Query: 318 GVGIRDGN-KLLQSMGSFPSLNTLHLESNNFTATLTTT--QELHNFTNLEYLTLDDSSLH 374
               ++   ++       P L T+ + +   T          +    +L+++ +  + L 
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

Query: 375 ISLLQSIGSIFPSLKNLS 392
             + + +    P   ++S
Sbjct: 321 DEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 3e-04
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 3/131 (2%)

Query: 5   LLIIFGGGWSEGC---LDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGL 61
           L II GG         L  +   L +L  +          D   +  +   +    +  L
Sbjct: 198 LEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL 257

Query: 62  YLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGN 121
            + +                  QLE++D+S   +        L+ + ++ +LK +++  N
Sbjct: 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317

Query: 122 AFNNNVLSSLA 132
             ++ +   L 
Sbjct: 318 YLSDEMKKELQ 328

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 42/247 (17%), Positives = 89/247 (36%), Gaps = 31/247 (12%)

Query: 134 LSSLRSLYLSDNRLEGSIDVKEL-----DSLRDLEELDIGGNKIDK---FMVSKGLSKLK 185
           LSSLR L L+  R+   +    +          L+E+++   ++D      +     + +
Sbjct: 71  LSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 186 SLGLSGT--GFKGTFDVREFDSFNN--LEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLD 241
            LGL     G +   D+R+    +   +  L +S N +    V   +E L+  + +  L 
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 242 LRGNLCNN----SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL----SNLEELDIND 293
           L      +     + + + R   L  L++++N   G   A           +LE L +  
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTAALALARAAREHPSLELLHLYF 248

Query: 294 NEIDNV------EVSRGYRGLRKLKSLDLSGVGIRD-GNKLLQSMGSFPSLNTLHLESNN 346
           NE+ +       ++     G  ++      G  + +  + +L  +    +LN+       
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQR--NLNSWDRARVQ 306

Query: 347 FTATLTT 353
               L  
Sbjct: 307 RHLELLL 313

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 58.2 bits (141), Expect = 8e-09
 Identities = 35/219 (15%), Positives = 70/219 (31%), Gaps = 40/219 (18%)

Query: 84  QLESLDLSWNNI--AGCAENEGL-EGLSRLNNLKMLDLSGNAFNNNVLSSLARL----SS 136
           Q+ +L LS N +  AG A    L EGL+   ++  L L      +  L  LA        
Sbjct: 156 QITTLRLSNNPLTAAGVAV---LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212

Query: 137 LRSLYLSDNRL--EGSIDVKE-LDSLRDLEELDIGGNKI---------DKFMVSKGLSKL 184
           L+ L ++ N      ++ +         LE L +  N++         D    ++G +++
Sbjct: 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARV 272

Query: 185 KSLGLSGTGF--------------KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLER 230
                 GT                  ++D         L + D+  +    L   +  + 
Sbjct: 273 VVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQL 332

Query: 231 LSRLSKLKKLDLRGNLCNN----SILSSVARLSSLTSLH 265
           L    +++ L  +     +           + +     H
Sbjct: 333 LRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHHHH 371

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 59/342 (17%), Positives = 107/342 (31%), Gaps = 46/342 (13%)

Query: 207 NNLEVLDMSGNEIDNLVVPQGLERLSR---------LSKLKKLDLRGNLCNNSILSSVAR 257
           +N  VL   G  I NL   +  + + +         L   + LD              A 
Sbjct: 10  HNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAE 69

Query: 258 -LSSLTSLHLSHNILQGSIDAKEF-----DSLSNLEELDINDNEIDNVEVSRGYRGLRKL 311
            LSSL  L+L+   +   +               L+E+++   ++D   +        + 
Sbjct: 70  VLSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128

Query: 312 KSLDLSGVGIRD-GNKLLQSMGSFP--SLNTLHLESNNFTAT--LTTTQELHNFTNLEYL 366
           + L L    +     K L+ +       + TL L +N  TA       + L   T++ +L
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188

Query: 367 TLDDSSLHISLLQSIGSIF---PSLKNLSMSGCEV--NGVLS-GQGFPHFKSLEHLDMRF 420
           +L  + L    L+ + +       L+ L+++         L+  +      SLE L + F
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248

Query: 421 ARI----ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 476
             +          L    E    +      G+ +    S IL +    L       +  +
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRH 308

Query: 477 ------DLRGSL-----PWCLANT----TSLRILDVSFNQLT 503
                 DL  S      PW  A        +R L        
Sbjct: 309 LELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 16/155 (10%)

Query: 637 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG-----NVIFL 691
                L  +++++          +  +        + +N+L              +   +
Sbjct: 98  SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQI 157

Query: 692 QFLDLSNNKLTGEIPDHLA---MCCVNLEFLSLSNNSLK----GHIFSRIFSLRNLRWLL 744
             L LSNN LT      L        ++  LSL +  L       + +++   R L+ L 
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217

Query: 745 LEGNHF----VGEIPQSLSKCSSLKGLYLNNNNLS 775
           +  N         + ++  +  SL+ L+L  N LS
Sbjct: 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 50/356 (14%), Positives = 91/356 (25%), Gaps = 89/356 (25%)

Query: 435 ESMPSLKYLSLSGSTLGTNSSRILDQGLC-PLAHLQELYIDNNDLRGSLPWCLANT-TSL 492
           E + SL+ L+L+G  +      ++   L      L E+ + +  L  +    L       
Sbjct: 69  EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128

Query: 493 RILDVSFNQLT----GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAK 548
           R L +  N L       +    L     I  LRLSNN       +  L            
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT-AAGVAVL------------ 175

Query: 549 NNEINGEINESHSLTPKFQLKSLSLSSNY-GDSVTFPKFLYHQHELKEAELSHIKMIGEF 607
                        L     +  LSL     GD                     ++++   
Sbjct: 176 ----------MEGLAGNTSVTHLSLLHTGLGD-------------------EGLELLAA- 205

Query: 608 PNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 663
               L+ N +L+ L +  +      A         H  L  L +  N         + D+
Sbjct: 206 ---QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262

Query: 664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723
             +                        +         ++           V L  +  + 
Sbjct: 263 GGAAE------------------GGARVVVSLTEGTAVS-------EYWSVILSEVQRNL 297

Query: 724 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC----SSLKGLYLNNNNLS 775
           NS      +R+     L    LE +      P   ++       ++ L     +  
Sbjct: 298 NSWDR---ARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 21/132 (15%)

Query: 675 NALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFLSLSNNSLKGHIF 731
           N+L       F  +  L  L L  NKL      + + L     +L +L+LS N L+  + 
Sbjct: 38  NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL----TSLTYLNLSTNQLQS-LP 92

Query: 732 SRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPR-WLGN 784
           + +F  L  L+ L L  N       QSL      K + LK L L  N L   +P      
Sbjct: 93  NGVFDKLTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDR 146

Query: 785 LKGLQHIVMPKN 796
           L  LQ+I +  N
Sbjct: 147 LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 38/161 (23%)

Query: 114 KMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKID 173
             LDL  N+  +        L+SL  LYL  N+L+ S+     + L  L  L++  N   
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN--- 86

Query: 174 KFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 233
                    +L+SL               FD    L+ L ++ N++ +L  P G+    +
Sbjct: 87  ---------QLQSL-----------PNGVFDKLTQLKELALNTNQLQSL--PDGV--FDK 122

Query: 234 LSKLKKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHN 269
           L++LK L L  N      L SV      RL+SL  + L  N
Sbjct: 123 LTQLKDLRLYQNQ-----LKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 832 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 890
           P     + L  N L   L  G F   +SL  L L  N L  S+P+ + + L+ L++LNL+
Sbjct: 27  PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84

Query: 891 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNN-NSSPDKPF 945
            N L+        +L QL+ L L+ N L  L    FD       L    N   S PD  F
Sbjct: 85  TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 18/114 (15%)

Query: 692 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 750
             L L++N+L     D L     +L  L L  N L G I    F    +++ L L  N  
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90

Query: 751 VGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPRWLG---NLKGLQHIVMPKN 796
                + +S         LK L L +N +S  +    G   +L  L  + +  N
Sbjct: 91  -----KEISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 832 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 890
           PL   ++ L+ N L     +G F     LV L+L  N L   I     +G S +  L L 
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86

Query: 891 HNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN 928
            N ++ E+  ++   L+QL+ L+L DN +  ++P  F++
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 17/115 (14%)

Query: 210 EVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLTSL 264
             L ++ NE+  +    GL    RL  L KL+L+ N      L+ +        S +  L
Sbjct: 32  TELLLNDNELGRIS-SDGL--FGRLPHLVKLELKRN-----QLTGIEPNAFEGASHIQEL 83

Query: 265 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG-YRGLRKLKSLDLSG 318
            L  N ++  I  K F  L  L+ L++ DN+I    V  G +  L  L SL+L+ 
Sbjct: 84  QLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC--VMPGSFEHLNSLTSLNLAS 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 37/137 (27%)

Query: 138 RSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGT 197
             L L+DN L           L  L +L++  N            +L  +          
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRN------------QLTGI---------- 69

Query: 198 FDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR 257
            +   F+  ++++ L +  N+I  +     +     L +LK L+L  N      +S V  
Sbjct: 70  -EPNAFEGASHIQELQLGENKIKEI--SNKM--FLGLHQLKTLNLYDNQ-----ISCVMP 119

Query: 258 -----LSSLTSLHLSHN 269
                L+SLTSL+L+ N
Sbjct: 120 GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 806 FCRLDSLQILDISDNNISGSLPS-CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTL 863
           F RL  L  L++  N ++  +    F   S I+++ L +N +  ++    F     L TL
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTL 107

Query: 864 DLSYNYLNGSIPDWI-DGLSQLSHLNLAHN 892
           +L  N ++  +     + L+ L+ LNLA N
Sbjct: 108 NLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 247 CNNSILSSV-ARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 304
           C    L  +   +    T L L+ N L        F  L +L +L++  N++  +E    
Sbjct: 15  CTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNA 73

Query: 305 YRGLRKLKSLDLSGVGIRDGNKLLQSM--GSF---PSLNTLHLESN 345
           + G   ++ L L        NK ++ +    F     L TL+L  N
Sbjct: 74  FEGASHIQELQLG------ENK-IKEISNKMFLGLHQLKTLNLYDN 112

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 685 FGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRN 739
           FG +  L  L+L  N+LT  I     +       +++ L L  N +K  I +++F  L  
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGA----SHIQELQLGENKIK-EISNKMFLGLHQ 103

Query: 740 LRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNN 772
           L+ L L  N  +  +   S    +SL  L L +N
Sbjct: 104 LKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 13/99 (13%)

Query: 680 SIPSSFGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF 735
            +P    N   L  +DLSNN+++  +      ++      L  L LS N L+  I  R F
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNM----TQLLTLILSYNRLRC-IPPRTF 98

Query: 736 -SLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNN 772
             L++LR L L GN  +  +P+ + +  S+L  L +  N
Sbjct: 99  DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 15/98 (15%)

Query: 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----A 256
           E  ++ +L ++D+S N I  L         S +++L  L L  N      L  +      
Sbjct: 49  ELSNYKHLTLIDLSNNRISTL--SNQS--FSNMTQLLTLILSYNR-----LRCIPPRTFD 99

Query: 257 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
            L SL  L L  N +   +    F+ LS L  L I  N
Sbjct: 100 GLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 15/113 (13%)

Query: 238 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 297
            +L L GN     +   ++    LT + LS+N +  ++  + F +++ L  L ++ N + 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 298 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM--GSF---PSLNTLHLESN 345
            +   R + GL+ L+ L L       GN  +  +  G+F    +L+ L + +N
Sbjct: 92  CIPP-RTFDGLKSLRLLSL------HGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 813 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 871
             L +  N  +  +P        +  + LS N +   L   +F N + L+TL LSYN L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLR 91

Query: 872 GSIPDWI-DGLSQLSHLNLAHNNL 894
             IP    DGL  L  L+L  N++
Sbjct: 92  -CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 988  LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
            L L  N+    +P ++ N   +  ++LS+N ++     +FSN+  + +L LSYN+L   I
Sbjct: 36   LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 1048 PRQLVD-LNTLAIFIVAYNNLSGKIPE 1073
            P +  D L +L +  +  N++S  +PE
Sbjct: 94   PPRTFDGLKSLRLLSLHGNDIS-VVPE 119

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 15/97 (15%)

Query: 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA-----R 257
           FD    L  L +S N+I +L  P G+    +L+KL  L L  N      L S+      +
Sbjct: 48  FDKLTQLTKLSLSQNQIQSL--PDGV--FDKLTKLTILYLHENK-----LQSLPNGVFDK 98

Query: 258 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 294
           L+ L  L L  N L+ S+    FD L++L+++ ++ N
Sbjct: 99  LTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 35/115 (30%), Positives = 45/115 (39%), Gaps = 21/115 (18%)

Query: 692 QFLDLSNNKLTGEIP---DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEG 747
             L+L +NKL        D L      L  LSLS N ++  +   +F  L  L  L L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKL----TQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHE 85

Query: 748 NHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKN 796
           N       QSL      K + LK L L+ N L   +P      L  LQ I +  N
Sbjct: 86  NKL-----QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 15/95 (15%)

Query: 210 EVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA-----RLSSLTSL 264
             L++  N++ +L  P G+    +L++L KL L  N      + S+      +L+ LT L
Sbjct: 31  TRLELESNKLQSL--PHGV--FDKLTQLTKLSLSQNQ-----IQSLPDGVFDKLTKLTIL 81

Query: 265 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV 299
           +L  N LQ S+    FD L+ L+EL ++ N++ +V
Sbjct: 82  YLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSV 115

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 5/99 (5%)

Query: 832 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 890
           P S  ++ L  N L   L  G F   + L  L LS N +  S+PD + D L++L+ L L 
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84

Query: 891 HNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN 928
            N L+  +P  +  +L QL+ L L  N L  +    FD 
Sbjct: 85  ENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 27/138 (19%)

Query: 438 PSLKYLSLSGSTLGTNSSRILDQGLCPLA-------HLQELYIDNNDLRGSLPWCLANT- 489
           P L+ ++L+      N   I    L   A       ++++  I        + + LA   
Sbjct: 36  PDLEEVNLN------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML 89

Query: 490 ---TSLRILDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHFRIPVS-----LEPLF 537
               +L+ L+V  N ++G    ++  + L   TS+ ELR+ N    +  +        L 
Sbjct: 90  KVNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANMLE 148

Query: 538 NHSKLKIFDAKNNEINGE 555
            ++ L  F     +    
Sbjct: 149 KNTTLLKFGYHFTQQGPR 166

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 13/100 (13%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNA-FNNNVLSSLARLS 135
           +      +++++D + + I     + G + +  L  ++ + L       +  L  L++L 
Sbjct: 55  TGPLDKYKIQAIDATDSCI----MSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 136 ----SLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNK 171
               S+  + +          +  L   R+L+ L +    
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 46/153 (30%)

Query: 112 NLKMLDLSGNAFN-----NNVLSSLARLS--------------SLRSLYLSDNRLEGSID 152
           + + LDL G   +      N+   L R S               L SL LS+NRL    D
Sbjct: 128 SQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD 187

Query: 153 VKELDSLR-DLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEV 211
           +  +     +L+ L++ GN++      + L K+K L                     LE 
Sbjct: 188 MSSIVQKAPNLKILNLSGNELKSE---RELDKIKGL--------------------KLEE 224

Query: 212 LDMSGNEIDNLVVPQGLER---LSRLSKLKKLD 241
           L + GN + +    Q         R  KL +LD
Sbjct: 225 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1180
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.52
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.14
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.03
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.51
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.22
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.22
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.97
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.74
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.85
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.53
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.36

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4e-84  Score=816.24  Aligned_cols=737  Identities=31%  Similarity=0.429  Sum_probs=497.3

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCCCCC----CCCCCcccceeEecCCCCceEEEEeccccCCcccccccccccCCCCCCEEE
Q 001036           14 SEGCLDHERFALLRLKHFFTDPYDK----GATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLD   89 (1180)
Q Consensus        14 ~~~~~~~~~~~ll~~k~~~~~~~~~----~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~   89 (1180)
                      +..+.++||+|||+||+++.||...    .++|||+|+||+|+  ++||++|+|++..+.|.+..-+..+.++++|++++
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~   83 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF   83 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred             cccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence            4456789999999999999998621    46899999999998  69999999999888775332345678889999999


Q ss_pred             ccCcccCCCchhcccccccCCCCCcEEecCCCcCCCCccc--cccCCCCCcEEEccCccccCccChhhccCCCCCCeEEc
Q 001036           90 LSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLS--SLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDI  167 (1180)
Q Consensus        90 Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~lp~--~l~~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L  167 (1180)
                      ++.+.+...+     +.++++++||+|||++|.+.+.+|.  .++++++|++|++++|.+.+.++...++++++|++|++
T Consensus        84 ~~~~~~~~l~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  158 (768)
T 3rgz_A           84 LSNSHINGSV-----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL  158 (768)
T ss_dssp             CTTSCEEECC-----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred             CcCCCcCCCc-----hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence            9988765433     4688999999999999999888888  89999999999999999987777644588899999999


Q ss_pred             cCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcC
Q 001036          168 GGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLC  247 (1180)
Q Consensus       168 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~  247 (1180)
                      ++|.+.+..+..                    ...+.++++|++|++++|.+.+..+      ...+++|++|++++|  
T Consensus       159 s~n~l~~~~~~~--------------------~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n--  210 (768)
T 3rgz_A          159 SANSISGANVVG--------------------WVLSDGCGELKHLAISGNKISGDVD------VSRCVNLEFLDVSSN--  210 (768)
T ss_dssp             CSSCCEEETHHH--------------------HHHTTCCTTCCEEECCSSEEESCCB------CTTCTTCCEEECCSS--
T ss_pred             CCCccCCcCChh--------------------hhhhccCCCCCEEECCCCcccccCC------cccCCcCCEEECcCC--
Confidence            988876654321                    0113445555555555554433211      122222333322222  


Q ss_pred             CchhhHHhhccCCCceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhh
Q 001036          248 NNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL  327 (1180)
Q Consensus       248 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~  327 (1180)
                                            .+.+.+                                                    
T Consensus       211 ----------------------~l~~~~----------------------------------------------------  216 (768)
T 3rgz_A          211 ----------------------NFSTGI----------------------------------------------------  216 (768)
T ss_dssp             ----------------------CCCSCC----------------------------------------------------
T ss_pred             ----------------------cCCCCC----------------------------------------------------
Confidence                                  221111                                                    


Q ss_pred             hhhcCCCCCCceecccCCcccccccchhhhcCCCCccEEEcCCCCCchhhHhhHhhhCCCCCEEEcCCCcccccccCCCC
Q 001036          328 LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF  407 (1180)
Q Consensus       328 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  407 (1180)
                                              +   .++++++|++|++++|.+.+..+..+.. +++|++|++++|.+.+.+|.   
T Consensus       217 ------------------------~---~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~---  265 (768)
T 3rgz_A          217 ------------------------P---FLGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPP---  265 (768)
T ss_dssp             ------------------------C---BCTTCCSCCEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCC---
T ss_pred             ------------------------c---ccccCCCCCEEECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCc---
Confidence                                    1   1233344444444444443333333333 45555555555544433331   


Q ss_pred             CccccceeeccchhhhccccchhhhhcccCCcceeeeccCcccCCCCccccccccCCCCCCcEEEccCCCcccccchhhc
Q 001036          408 PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA  487 (1180)
Q Consensus       408 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  487 (1180)
                                                                            . .+++|++|++++|.+++.+|..+.
T Consensus       266 ------------------------------------------------------~-~l~~L~~L~L~~n~l~~~ip~~~~  290 (768)
T 3rgz_A          266 ------------------------------------------------------L-PLKSLQYLSLAENKFTGEIPDFLS  290 (768)
T ss_dssp             ------------------------------------------------------C-CCTTCCEEECCSSEEEESCCCCSC
T ss_pred             ------------------------------------------------------c-ccCCCCEEECcCCccCCccCHHHH
Confidence                                                                  0 245566666666666666665554


Q ss_pred             CC-CCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEEecCCcccccccccccCCCCcc
Q 001036          488 NT-TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF  566 (1180)
Q Consensus       488 ~l-~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~  566 (1180)
                      .. ++|++|++++|.+++.+ +..+.++++|++|++++|.+.+.++...+.++++|                        
T Consensus       291 ~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L------------------------  345 (768)
T 3rgz_A          291 GACDTLTGLDLSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL------------------------  345 (768)
T ss_dssp             TTCTTCSEEECCSSEEEECC-CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTC------------------------
T ss_pred             hhcCcCCEEECcCCcCCCcc-chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCC------------------------
Confidence            43 66666666666665544 45555555566655555555443333222222222                        


Q ss_pred             cceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCC-CccEE
Q 001036          567 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK-RLRFL  645 (1180)
Q Consensus       567 ~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L  645 (1180)
                                                                          +.|++++|.+++.+|..+..++ +|++|
T Consensus       346 ----------------------------------------------------~~L~Ls~n~l~~~~p~~l~~l~~~L~~L  373 (768)
T 3rgz_A          346 ----------------------------------------------------KVLDLSFNEFSGELPESLTNLSASLLTL  373 (768)
T ss_dssp             ----------------------------------------------------CEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred             ----------------------------------------------------CEEeCcCCccCccccHHHHhhhcCCcEE
Confidence                                                                2222222222222222222222 45566


Q ss_pred             EccCCcccccCChhhhhc-CCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCC
Q 001036          646 DVSNNNFQGHIPVEIGDI-LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN  724 (1180)
Q Consensus       646 ~l~~n~l~~~ip~~~~~~-l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n  724 (1180)
                      ++++|.++|.+|..+... +++|++|++++|.+++.+|..++++++|++|++++|++++.+|..+ ..+++|++|++++|
T Consensus       374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n  452 (768)
T 3rgz_A          374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLN  452 (768)
T ss_dssp             ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSS
T ss_pred             EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCC
Confidence            666666666666555421 4677777777777777777777777777777777777776676665 36777777777777


Q ss_pred             cccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCc
Q 001036          725 SLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPV  804 (1180)
Q Consensus       725 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~  804 (1180)
                      .+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|.
T Consensus       453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  532 (768)
T 3rgz_A          453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA  532 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred             cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cccCCCCCCEEEccCCcccccCCCCcCCC-cccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCC
Q 001036          805 EFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ  883 (1180)
Q Consensus       805 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~  883 (1180)
                      .++.+++|++|++++|+++|.+|..+... .+..                ..-....+...+.++... ..+...+.   
T Consensus       533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~---  592 (768)
T 3rgz_A          533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA----------------ANFIAGKRYVYIKNDGMK-KECHGAGN---  592 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC----------------CSTTCSCEEEEEECCSCC-TTCCSSEE---
T ss_pred             HHcCCCCCCEEECCCCccCCcCChHHhcccchhh----------------hhcccccccccccccccc-cccccccc---
Confidence            77777777777777777776666543211 0000                000001111222222111 00000000   


Q ss_pred             CCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhh
Q 001036          884 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL  963 (1180)
Q Consensus       884 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  963 (1180)
                        .     -.+.+..+..+..++.++.++++.|.++|.+|..+++++                                 
T Consensus       593 --~-----~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~---------------------------------  632 (768)
T 3rgz_A          593 --L-----LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG---------------------------------  632 (768)
T ss_dssp             --E-----EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB---------------------------------
T ss_pred             --c-----cccccccchhhhccccccccccccceecccCchhhhccc---------------------------------
Confidence              0     134566777788888888899999999999998887644                                 


Q ss_pred             hhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcC
Q 001036          964 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043 (1180)
Q Consensus       964 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1043 (1180)
                                          .|+.||||+|+++|.+|.+|+++++|+.||||+|+++|.||++|+++++|+.||||+|++
T Consensus       633 --------------------~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l  692 (768)
T 3rgz_A          633 --------------------SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL  692 (768)
T ss_dssp             --------------------CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             --------------------cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence                                789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCCCCCCCCcC
Q 001036         1044 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLA 1104 (1180)
Q Consensus      1044 ~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l~~c~~~~ 1104 (1180)
                      +|.||..+.+++.|++||+++|+++|.||+ .++|.++...+|.|||++||.|+..|....
T Consensus       693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~  752 (768)
T 3rgz_A          693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRCDPSN  752 (768)
T ss_dssp             EECCCGGGGGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred             cCcCChHHhCCCCCCEEECcCCcccccCCC-chhhccCCHHHhcCCchhcCCCCcCCCCCc
Confidence            999999999999999999999999999999 789999999999999999999988886543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.7e-67  Score=661.64  Aligned_cols=617  Identities=28%  Similarity=0.402  Sum_probs=506.6

Q ss_pred             ccCCCCCCcEEEccCCCcccccch--hhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCccc--c
Q 001036          461 GLCPLAHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP--L  536 (1180)
Q Consensus       461 ~l~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--l  536 (1180)
                      .++.+++|++|++++|.+.+.+|.  .++++++|++|++++|.+.+.++...+.++++|++|++++|.+++..+...  +
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  174 (768)
T 3rgz_A           95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS  174 (768)
T ss_dssp             CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred             hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhh
Confidence            455566777777777777776666  677777777777777777666644444667777777777777765443221  5


Q ss_pred             cCCCCCcEEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCC
Q 001036          537 FNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNT  616 (1180)
Q Consensus       537 ~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~  616 (1180)
                      .++++|+++++++|.+.+..+.    ....+|++|++++|... ..+|. +..+++|++|++++|.+.+.+|.. +.+++
T Consensus       175 ~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l~-~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~  247 (768)
T 3rgz_A          175 DGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNFS-TGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCT  247 (768)
T ss_dssp             TCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCCC-SCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCS
T ss_pred             ccCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCcCC-CCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCC
Confidence            6677777777777776543322    34456777777665433 34455 788899999999999999988887 57899


Q ss_pred             cccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEc
Q 001036          617 KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL  696 (1180)
Q Consensus       617 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l  696 (1180)
                      +|+.|++++|.+++..+..  .+++|++|++++|.++|.+|..++..+++|++|++++|.+++.+|..|+++++|++|++
T Consensus       248 ~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  325 (768)
T 3rgz_A          248 ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL  325 (768)
T ss_dssp             SCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEEC
Confidence            9999999999999877665  88999999999999999999998876699999999999999999999999999999999


Q ss_pred             cCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCc-cCceeeccCCcccccCCCcCCC--CCCCcEEECcCCc
Q 001036          697 SNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR-NLRWLLLEGNHFVGEIPQSLSK--CSSLKGLYLNNNN  773 (1180)
Q Consensus       697 ~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~l~~n~  773 (1180)
                      ++|+++|.+|...+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..  +++|++|++++|.
T Consensus       326 ~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~  405 (768)
T 3rgz_A          326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG  405 (768)
T ss_dssp             CSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred             CCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence            999999999998777899999999999999999999999998 9999999999999999988877  8899999999999


Q ss_pred             CCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcC-CCcccEEEcCCcccccccCcc
Q 001036          774 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEG  852 (1180)
Q Consensus       774 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~~~~~~~~~  852 (1180)
                      +++.+|.+++++++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+. ..+|++|++++|.+.+.+|. 
T Consensus       406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-  484 (768)
T 3rgz_A          406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-  484 (768)
T ss_dssp             EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-
T ss_pred             cccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH-
Confidence            9999999999999999999999999999999999999999999999999999998774 57999999999999999998 


Q ss_pred             cccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccc
Q 001036          853 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH  932 (1180)
Q Consensus       853 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  932 (1180)
                      .+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..++.+++|++||+++|+++|.+|..+......
T Consensus       485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~  564 (768)
T 3rgz_A          485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK  564 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred             HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999987664422


Q ss_pred             cccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEE
Q 001036          933 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 1012 (1180)
Q Consensus       933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L 1012 (1180)
                      ........  .. ..+....+..... ........+  .+.. ......++.+..++++.|.+.|.+|..++++++|++|
T Consensus       565 ~~~~~~~~--~~-~~~~~~~~~~~~~-~~~~~~~~~--~~~~-~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L  637 (768)
T 3rgz_A          565 IAANFIAG--KR-YVYIKNDGMKKEC-HGAGNLLEF--QGIR-SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL  637 (768)
T ss_dssp             BCCSTTCS--CE-EEEEECCSCCTTC-CSSEEEEEC--TTCC-GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred             hhhhcccc--cc-ccccccccccccc-ccccccccc--cccc-chhhhccccccccccccceecccCchhhhccccccEE
Confidence            21110000  00 0000000000000 000000000  0000 0001224567778999999999999999999999999


Q ss_pred             eCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCC
Q 001036         1013 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFL 1092 (1180)
Q Consensus      1013 ~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~l 1092 (1180)
                      |||+|+++|.+|.+|+++++|+.|||++|+++|.||.++++++.|++||+|+|+++|.||..+..+..+...++++|+..
T Consensus       638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999998899999999999999754


Q ss_pred             CC
Q 001036         1093 CG 1094 (1180)
Q Consensus      1093 c~ 1094 (1180)
                      ..
T Consensus       718 g~  719 (768)
T 3rgz_A          718 GP  719 (768)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.1e-55  Score=548.30  Aligned_cols=560  Identities=20%  Similarity=0.234  Sum_probs=458.0

Q ss_pred             ccCCCCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCC
Q 001036          461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHS  540 (1180)
Q Consensus       461 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  540 (1180)
                      .+..+++|++|++++|.+++..|..++++++|++|++++|.++ .+++..+.++++|++|++++|.+. .++...|.+++
T Consensus        44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~  121 (680)
T 1ziw_A           44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQK  121 (680)
T ss_dssp             GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCT
T ss_pred             HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccC-ccChhHccccC
Confidence            4566777777777777777777777777777777777777776 454556777777777777777775 34445567777


Q ss_pred             CCcEEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhh-hhcCCccc
Q 001036          541 KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL-LENNTKLE  619 (1180)
Q Consensus       541 ~L~~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~-~~~~~~L~  619 (1180)
                      +|++|++++|.+.+.                           .|..+..+++|++|++++|.+.+..+..+ ...+++|+
T Consensus       122 ~L~~L~Ls~n~l~~~---------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~  174 (680)
T 1ziw_A          122 NLITLDLSHNGLSST---------------------------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK  174 (680)
T ss_dssp             TCCEEECCSSCCSCC---------------------------CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred             CCCEEECCCCccccc---------------------------CchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence            777777777765432                           23445567788888888888877665543 22568899


Q ss_pred             EEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhh--cCCCCcEEEccCCcCCccCCccccCccc--CcEEE
Q 001036          620 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD--ILPSLVYFNISMNALDGSIPSSFGNVIF--LQFLD  695 (1180)
Q Consensus       620 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~--~l~~L~~L~ls~n~l~~~~p~~~~~l~~--L~~L~  695 (1180)
                      .|++++|.+++..+..+..+++|+.++++++.+.+.....+..  ..++|+.|++++|.+++..|..|.+++.  |+.|+
T Consensus       175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~  254 (680)
T 1ziw_A          175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD  254 (680)
T ss_dssp             EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred             EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence            9999999999888888888999999999998876433222211  1478999999999999999999998876  99999


Q ss_pred             ccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccc-----cCCC----cCCCCCCCcE
Q 001036          696 LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG-----EIPQ----SLSKCSSLKG  766 (1180)
Q Consensus       696 l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~p~----~~~~l~~L~~  766 (1180)
                      +++|++++..|.. +..+++|++|++++|.+++..|..+.++++|++|++++|...+     .+|.    .|..+++|++
T Consensus       255 Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~  333 (680)
T 1ziw_A          255 LSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH  333 (680)
T ss_dssp             CTTSCCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred             CCCCCcCccCccc-ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence            9999998544444 4689999999999999999999999999999999999876553     2332    7888999999


Q ss_pred             EECcCCcCCCCCcccccCCCCCCeEEccCCcCCCC--CCccccC--CCCCCEEEccCCcccccCCCCcC-CCcccEEEcC
Q 001036          767 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP--IPVEFCR--LDSLQILDISDNNISGSLPSCFY-PLSIKQVHLS  841 (1180)
Q Consensus       767 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~--l~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~  841 (1180)
                      |++++|.+.+..|..+.++++|++|++++|.+.+.  .+..|..  .++|+.|++++|++++..|..+. ..+|+.|+++
T Consensus       334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  413 (680)
T 1ziw_A          334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG  413 (680)
T ss_dssp             EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence            99999999998888999999999999999986433  2233433  36899999999999988887775 4689999999


Q ss_pred             CcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccc--cCCCccccCCCCCCEEECcCCcCc
Q 001036          842 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLNQLQLLDLSDNNLH  919 (1180)
Q Consensus       842 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~  919 (1180)
                      +|.+.+.+|...|.++++|++|++++|++++..+..|..+++|+.|++++|.+.  +.+|..+..+++|++|++++|+++
T Consensus       414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~  493 (680)
T 1ziw_A          414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA  493 (680)
T ss_dssp             SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence            999999888778999999999999999999999999999999999999999987  678999999999999999999999


Q ss_pred             ccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCC
Q 001036          920 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI  999 (1180)
Q Consensus       920 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~  999 (1180)
                      +..|..|.+++                                                     .|+.|||++|++++..
T Consensus       494 ~i~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~~~  520 (680)
T 1ziw_A          494 NINDDMLEGLE-----------------------------------------------------KLEILDLQHNNLARLW  520 (680)
T ss_dssp             CCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCCGGGG
T ss_pred             cCChhhhcccc-----------------------------------------------------ccCEEeCCCCCccccc
Confidence            88887776644                                                     7999999999998642


Q ss_pred             --------CccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccC
Q 001036         1000 --------PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 1071 (1180)
Q Consensus      1000 --------p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~i 1071 (1180)
                              +..|+++++|++|+|++|+++...+..|+++++|+.|||++|++++..|..|..+++|+.|++++|++++.+
T Consensus       521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence                    234889999999999999999655567999999999999999999877778899999999999999999988


Q ss_pred             CCccc-ccccCCccccCCCCCCCCCCC-CCCCCc
Q 001036         1072 PEWTA-QFATFNKSSYDGNPFLCGLPL-PICRSL 1103 (1180)
Q Consensus      1072 p~~~~-~~~~~~~~~~~~N~~lc~~~l-~~c~~~ 1103 (1180)
                      |..+. .+.++...++.|||+.|+|+. .|...|
T Consensus       601 ~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~  634 (680)
T 1ziw_A          601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW  634 (680)
T ss_dssp             HHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred             hhHhcccccccCEEEccCCCcccCCccHHHHHHH
Confidence            87555 678888899999999999985 555444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4e-54  Score=539.33  Aligned_cols=520  Identities=24%  Similarity=0.236  Sum_probs=338.9

Q ss_pred             ccCCCCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccc--cC
Q 001036          461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPL--FN  538 (1180)
Q Consensus       461 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l--~~  538 (1180)
                      .+..+++|++|++++|.+++..|..|+++++|++|++++|.+++.. +..+.++++|++|++++|.+++..+ ..+  ..
T Consensus        92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~  169 (680)
T 1ziw_A           92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKS-EELDIFA  169 (680)
T ss_dssp             TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCBCH-HHHGGGT
T ss_pred             hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCcccccCH-HHhhccc
Confidence            3556677777777777777666667777777777777777776443 5566677777777777776653222 111  23


Q ss_pred             CCCCcEEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhh--hcCC
Q 001036          539 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLL--ENNT  616 (1180)
Q Consensus       539 l~~L~~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~--~~~~  616 (1180)
                      +++|+.+++++|.+.+.                           .|..+..+.+++.+++.++.+.+.....+.  ...+
T Consensus       170 ~~~L~~L~L~~n~l~~~---------------------------~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~  222 (680)
T 1ziw_A          170 NSSLKKLELSSNQIKEF---------------------------SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT  222 (680)
T ss_dssp             TCEESEEECTTCCCCCB---------------------------CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS
T ss_pred             cccccEEECCCCccccc---------------------------ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc
Confidence            45555555555554332                           233445556666667766665543322211  1235


Q ss_pred             cccEEEccCCcccCCCCCCCCCCCC--ccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEE
Q 001036          617 KLEFLYLVNDSLAGPFRLPIHSHKR--LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL  694 (1180)
Q Consensus       617 ~L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L  694 (1180)
                      +|+.|++++|.+++..+..+..++.  |+.|++++|.+++..|..+. .+++|++|++++|.+++..|..|.++++|++|
T Consensus       223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  301 (680)
T 1ziw_A          223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL  301 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred             cccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence            5666666666666555555544433  66666666655543333333 25566666666666655555555566666666


Q ss_pred             EccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcC
Q 001036          695 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL  774 (1180)
Q Consensus       695 ~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  774 (1180)
                      ++++|...+.++..                .+.......|..+++|++|++++|.+++..|..|.++++|++|++++|.+
T Consensus       302 ~L~~~~~~~~~~~~----------------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~  365 (680)
T 1ziw_A          302 NLKRSFTKQSISLA----------------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT  365 (680)
T ss_dssp             ECTTCBCCC----------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred             eccchhhhcccccc----------------cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence            66554433211100                00011112445555666666666666555555556666666666666554


Q ss_pred             CCCC-c-ccccC--CCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCC-Cc-CCCcccEEEcCCcccccc
Q 001036          775 SGKI-P-RWLGN--LKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CF-YPLSIKQVHLSKNMLHGQ  848 (1180)
Q Consensus       775 ~~~~-p-~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~-~~~~L~~L~l~~n~~~~~  848 (1180)
                      .... + ..+..  .++|+.|++++|++++..|..|..+++|++|++++|++++.+|. .+ ...+|++|++++|.+.+.
T Consensus       366 ~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  445 (680)
T 1ziw_A          366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL  445 (680)
T ss_dssp             CCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC
T ss_pred             hhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCccee
Confidence            3211 1 11221  24566666666666666666666666666666666666655543 22 234566666666666544


Q ss_pred             cCcccccCCCCCcEEECcCccCc--cccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCc
Q 001036          849 LKEGTFFNCSSLVTLDLSYNYLN--GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF  926 (1180)
Q Consensus       849 ~~~~~~~~~~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  926 (1180)
                      .+. .|..+++|+.|++++|.++  +.+|..|.++++|++|++++|++++..|..|.++++|++|+|++|++++..+..+
T Consensus       446 ~~~-~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  524 (680)
T 1ziw_A          446 TRN-SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN  524 (680)
T ss_dssp             CTT-TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred             Chh-hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence            444 8889999999999999987  5789999999999999999999998888889999999999999999987654433


Q ss_pred             cCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCC
Q 001036          927 DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 1006 (1180)
Q Consensus       927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l 1006 (1180)
                      .....                                             .....++.|+.|||++|+++...+..|+++
T Consensus       525 ~~~~~---------------------------------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l  559 (680)
T 1ziw_A          525 PGGPI---------------------------------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDL  559 (680)
T ss_dssp             TTSCC---------------------------------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCcc---------------------------------------------hhhcCCCCCCEEECCCCCCCCCCHHHcccc
Confidence            21100                                             000124589999999999995555579999


Q ss_pred             CCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCcccc-CCCCCCEEEcCCCcCcccCC
Q 001036         1007 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV-DLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus      1007 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~l~ls~N~l~g~ip 1072 (1180)
                      ++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..+. .+++|+.+++++|++.+..+
T Consensus       560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            9999999999999988888899999999999999999998888887 78999999999999999887

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-51  Score=523.40  Aligned_cols=551  Identities=20%  Similarity=0.175  Sum_probs=375.5

Q ss_pred             CCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcE
Q 001036          465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI  544 (1180)
Q Consensus       465 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  544 (1180)
                      .+++++|++++|.+++..|..|.++++|++|++++|...+.+++..+.++++|++|++++|.+.+. ....|.++++|++
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~  101 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFE  101 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCC
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCE
Confidence            467888888888888777888888888888888888776677677788888888888888888743 3456778888888


Q ss_pred             EecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcC--CcccEEE
Q 001036          545 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN--TKLEFLY  622 (1180)
Q Consensus       545 l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~--~~L~~L~  622 (1180)
                      |++++|.+.+.......+....+|++|+++.|.......+..+.++++|++|++++|.+.+..|..+ ..+  ++|+.|+
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~  180 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFS  180 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEE
Confidence            8888887765433332334444555555555544444444455566666666666666655555442 233  5566666


Q ss_pred             ccCCcccCCCCCCCCCCCC------ccEEEccCCcccccCChhhhhcC--CCCcEEEccCCcCCccCCccccCcccCcEE
Q 001036          623 LVNDSLAGPFRLPIHSHKR------LRFLDVSNNNFQGHIPVEIGDIL--PSLVYFNISMNALDGSIPSSFGNVIFLQFL  694 (1180)
Q Consensus       623 l~~n~~~~~~~~~~~~~~~------L~~L~l~~n~l~~~ip~~~~~~l--~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L  694 (1180)
                      +++|.+.+..+..+..+.+      |+.|++++|.+++.+|..+...+  +.++.+.++.+.....              
T Consensus       181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~--------------  246 (844)
T 3j0a_A          181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG--------------  246 (844)
T ss_dssp             ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS--------------
T ss_pred             CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc--------------
Confidence            6666665555544444333      55555555555544444443211  2344444442221100              


Q ss_pred             EccCcccccccChhhhhc--CCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCC
Q 001036          695 DLSNNKLTGEIPDHLAMC--CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNN  772 (1180)
Q Consensus       695 ~l~~n~l~~~ip~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n  772 (1180)
                       ...+.+. .+....+.+  .++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..|.++++|++|++++|
T Consensus       247 -~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N  324 (844)
T 3j0a_A          247 -FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN  324 (844)
T ss_dssp             -SSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred             -ccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence             1122232 112222223  367888888888888888888888888999999988888888888888888999999998


Q ss_pred             cCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcc
Q 001036          773 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEG  852 (1180)
Q Consensus       773 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~  852 (1180)
                      .+.+..|..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++. +.   .++++.+++++|++. .+|. 
T Consensus       325 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~---~~~L~~L~l~~N~l~-~l~~-  398 (844)
T 3j0a_A          325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF---IPSIPDIFLSGNKLV-TLPK-  398 (844)
T ss_dssp             CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS---CCSCSEEEEESCCCC-CCCC-
T ss_pred             CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC---CCCcchhccCCCCcc-cccc-
Confidence            88877788888888899999999888887777888888999999999888742 22   456778888888776 4554 


Q ss_pred             cccCCCCCcEEECcCccCcccc-chhhhcCCCCCEEecCCCccccCCCc-cccCCCCCCEEECcCCcCcccCCC-----C
Q 001036          853 TFFNCSSLVTLDLSYNYLNGSI-PDWIDGLSQLSHLNLAHNNLEGEVPI-QLCRLNQLQLLDLSDNNLHGLIPS-----C  925 (1180)
Q Consensus       853 ~~~~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~-----~  925 (1180)
                         ...+++.|++++|++++.. +..+.++++|++|+|++|++++..+. .+..+++|++|+|++|.+++..+.     .
T Consensus       399 ---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~  475 (844)
T 3j0a_A          399 ---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV  475 (844)
T ss_dssp             ---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred             ---cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence               2457888888888887643 33456788888888888888865443 355678888888888888744332     2


Q ss_pred             ccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccC
Q 001036          926 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN 1005 (1180)
Q Consensus       926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~ 1005 (1180)
                      |.+                                                     ++.|+.|||++|+|++.+|..|.+
T Consensus       476 ~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~  502 (844)
T 3j0a_A          476 FEG-----------------------------------------------------LSHLQVLYLNHNYLNSLPPGVFSH  502 (844)
T ss_dssp             SSC-----------------------------------------------------BCCEECCCCCHHHHTTCCTTSSSS
T ss_pred             hcC-----------------------------------------------------cccccEEECCCCcccccChhHccc
Confidence            222                                                     346888888888888888888888


Q ss_pred             CCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccc
Q 001036         1006 LTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSS 1085 (1180)
Q Consensus      1006 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~ 1085 (1180)
                      +++|+.|+|++|+|++..|..+.  ++|+.|||++|+|++.+|..+.   .|+.+++++|++.+.++-     ..|....
T Consensus       503 l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~-----~~f~~~~  572 (844)
T 3j0a_A          503 LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL-----STFINWL  572 (844)
T ss_dssp             CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC-----CSHHHHH
T ss_pred             hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc-----HHHHHHH
Confidence            88888888888888877777666  7888888888888888887654   677888888888876653     1111112


Q ss_pred             cCCCCCCCCCCCC-CCCCcCC
Q 001036         1086 YDGNPFLCGLPLP-ICRSLAT 1105 (1180)
Q Consensus      1086 ~~~N~~lc~~~l~-~c~~~~~ 1105 (1180)
                      ..+|..+|+.+.. .|..+..
T Consensus       573 ~~~~~~~~~~~~~~~C~~p~~  593 (844)
T 3j0a_A          573 NHTNVTIAGPPADIYCVYPDS  593 (844)
T ss_dssp             HHTTTTTCCCGGGCCCSSCSS
T ss_pred             HhcCcccccccccCccCCchh
Confidence            2345555655444 5665443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-50  Score=515.81  Aligned_cols=530  Identities=22%  Similarity=0.237  Sum_probs=446.2

Q ss_pred             cEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEEecC
Q 001036          469 QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAK  548 (1180)
Q Consensus       469 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~l~  548 (1180)
                      +..+.++++++. +|.   ..+++++|++++|.+++ +.+..+.++++|++|++++|...+.++...|.++++|++|+++
T Consensus         7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            356677777774 454   45799999999999984 4478899999999999999988878877889999999999999


Q ss_pred             CcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChh-hhhcCCcccEEEccCCc
Q 001036          549 NNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW-LLENNTKLEFLYLVNDS  627 (1180)
Q Consensus       549 ~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~-~~~~~~~L~~L~l~~n~  627 (1180)
                      +|.+....                           |..+..+++|++|++++|.+.+.+|.. .+.++++|+.|++++|.
T Consensus        82 ~N~l~~~~---------------------------p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~  134 (844)
T 3j0a_A           82 SSKIYFLH---------------------------PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ  134 (844)
T ss_dssp             TCCCCEEC---------------------------TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred             CCcCcccC---------------------------HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc
Confidence            99876542                           445666778888899999888866553 46789999999999999


Q ss_pred             ccCCCC-CCCCCCCCccEEEccCCcccccCChhhhhcC--CCCcEEEccCCcCCccCCccccCccc------CcEEEccC
Q 001036          628 LAGPFR-LPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL--PSLVYFNISMNALDGSIPSSFGNVIF------LQFLDLSN  698 (1180)
Q Consensus       628 ~~~~~~-~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l--~~L~~L~ls~n~l~~~~p~~~~~l~~------L~~L~l~~  698 (1180)
                      +++..+ ..+..+++|++|++++|.+++..|..+.. +  ++|+.|++++|.+.+..|..++.+.+      |+.|++++
T Consensus       135 l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~  213 (844)
T 3j0a_A          135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG  213 (844)
T ss_dssp             CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSS
T ss_pred             ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCC
Confidence            988655 46889999999999999999877777654 4  79999999999999988888877766      99999999


Q ss_pred             cccccccChhhhhc--CCCCCEEEccC---------CcccccccccccCC--ccCceeeccCCcccccCCCcCCCCCCCc
Q 001036          699 NKLTGEIPDHLAMC--CVNLEFLSLSN---------NSLKGHIFSRIFSL--RNLRWLLLEGNHFVGEIPQSLSKCSSLK  765 (1180)
Q Consensus       699 n~l~~~ip~~~~~~--~~~L~~L~L~~---------n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~  765 (1180)
                      |.+++.++..+...  .+.++.+.++.         +.+.+.....|.++  ++|+.|++++|.+.+..|..+..+++|+
T Consensus       214 n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  293 (844)
T 3j0a_A          214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK  293 (844)
T ss_dssp             CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCC
T ss_pred             CcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCC
Confidence            99988888776543  35688888773         34444445556554  7899999999999999999999999999


Q ss_pred             EEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcC-CCcccEEEcCCcc
Q 001036          766 GLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNM  844 (1180)
Q Consensus       766 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~  844 (1180)
                      .|++++|++.+..|..|..+++|++|++++|.+++..|..|.++++|+.|++++|++.+..+..+. .++|+.|++++|.
T Consensus       294 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             EEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred             EEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence            999999999988899999999999999999999999999999999999999999999877776664 5799999999999


Q ss_pred             cccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCC-CccccCCCCCCEEECcCCcCcccCC
Q 001036          845 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV-PIQLCRLNQLQLLDLSDNNLHGLIP  923 (1180)
Q Consensus       845 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p  923 (1180)
                      +++      +..+++|+.|++++|+++ .+|..   ..+++.|++++|++++.. +..+..+++|++|+|++|++++..+
T Consensus       374 l~~------i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~  443 (844)
T 3j0a_A          374 LTT------IHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG  443 (844)
T ss_dssp             SCC------CSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred             CCc------ccCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence            873      344789999999999998 45543   567999999999998643 2346689999999999999997654


Q ss_pred             CCc-cCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCccc-----C
Q 001036          924 SCF-DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV-----G  997 (1180)
Q Consensus       924 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----g  997 (1180)
                      ... ..                                                     +++|+.|+|++|.++     +
T Consensus       444 ~~~~~~-----------------------------------------------------~~~L~~L~Ls~N~l~~~~~~~  470 (844)
T 3j0a_A          444 DQTPSE-----------------------------------------------------NPSLEQLFLGENMLQLAWETE  470 (844)
T ss_dssp             SSSSCS-----------------------------------------------------CTTCCBCEEESCCCSSSCCSC
T ss_pred             cccccc-----------------------------------------------------CCccccccCCCCccccccccc
Confidence            322 11                                                     337999999999997     5


Q ss_pred             CCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccc
Q 001036          998 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077 (1180)
Q Consensus       998 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~ 1077 (1180)
                      ..|..|.++++|++|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+.  ++|+.||+++|+++|.+|..   
T Consensus       471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~---  545 (844)
T 3j0a_A          471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV---  545 (844)
T ss_dssp             CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC---
T ss_pred             cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH---
Confidence            5567799999999999999999999999999999999999999999987777776  89999999999999999975   


Q ss_pred             cccCCccccCCCCCCCCCCCCC
Q 001036         1078 FATFNKSSYDGNPFLCGLPLPI 1099 (1180)
Q Consensus      1078 ~~~~~~~~~~~N~~lc~~~l~~ 1099 (1180)
                      +..+...++.|||+.|+|++.+
T Consensus       546 ~~~L~~l~l~~Np~~C~c~~~~  567 (844)
T 3j0a_A          546 FVSLSVLDITHNKFICECELST  567 (844)
T ss_dssp             CSSCCEEEEEEECCCCSSSCCS
T ss_pred             hCCcCEEEecCCCcccccccHH
Confidence            3466778899999999998753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.6e-50  Score=495.65  Aligned_cols=516  Identities=21%  Similarity=0.211  Sum_probs=376.9

Q ss_pred             CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036          466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF  545 (1180)
Q Consensus       466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l  545 (1180)
                      +++++|++++|.+++..|..|+++++|++|++++|++.+ +.+..|.++++|++|++++|.+.+.. ...+.++++|++|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L  110 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHL  110 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEEC-TTTTSSCTTCCEE
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccccC-hhhhcccccccEe
Confidence            368888888888888778888888888888888888874 44677888888888888888877433 3346677777777


Q ss_pred             ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036          546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN  625 (1180)
Q Consensus       546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~  625 (1180)
                      ++++|.+....+.                                                   . +.++++|++|++++
T Consensus       111 ~L~~n~i~~l~~~---------------------------------------------------~-~~~l~~L~~L~L~~  138 (606)
T 3t6q_A          111 FFIQTGISSIDFI---------------------------------------------------P-LHNQKTLESLYLGS  138 (606)
T ss_dssp             ECTTSCCSCGGGS---------------------------------------------------C-CTTCTTCCEEECCS
T ss_pred             eccccCcccCCcc---------------------------------------------------h-hccCCcccEEECCC
Confidence            7777665532211                                                   1 34566666777777


Q ss_pred             CcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCc--EEEccCCcCCccCCccccCcccCcEEEccCccccc
Q 001036          626 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLV--YFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG  703 (1180)
Q Consensus       626 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~--~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  703 (1180)
                      |.+++.....+..+++|++|++++|.+++..|..+. .+++|+  .|++++|.+++..|..|.. ..|+.|++++|..  
T Consensus       139 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~--  214 (606)
T 3t6q_A          139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN--  214 (606)
T ss_dssp             SCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC--
T ss_pred             CcccccCcccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh--
Confidence            766664433444477777888888777744444444 377777  7788888888777666554 5678888877752  


Q ss_pred             ccChhhhhcCCCCCEEEccCCccc-----ccccccccCCc--cCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCC
Q 001036          704 EIPDHLAMCCVNLEFLSLSNNSLK-----GHIFSRIFSLR--NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG  776 (1180)
Q Consensus       704 ~ip~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  776 (1180)
                       ++..+ ..+.++....+....+.     ...+..+..+.  +|+.|++++|.+++..+..|+.+++|++|++++|+++ 
T Consensus       215 -~~~~~-~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-  291 (606)
T 3t6q_A          215 -LLVIF-KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-  291 (606)
T ss_dssp             -HHHHH-HHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-
T ss_pred             -HHHHh-hhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-
Confidence             22222 23444443333322221     11222333332  6777777777777777777777777777777777776 


Q ss_pred             CCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-c-CCCcccEEEcCCccccccc--Ccc
Q 001036          777 KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC-F-YPLSIKQVHLSKNMLHGQL--KEG  852 (1180)
Q Consensus       777 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~-~~~~L~~L~l~~n~~~~~~--~~~  852 (1180)
                      .+|.++..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. + ...+|++|++++|.+.+..  +. 
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-  370 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-  370 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-
T ss_pred             CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch-
Confidence            66777777777777777777777766777777777777777777777666653 2 3457777777777776544  44 


Q ss_pred             cccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCcc-ccCCCCCCEEECcCCcCcccCCCCccCccc
Q 001036          853 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSCFDNTTL  931 (1180)
Q Consensus       853 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  931 (1180)
                      .+.++++|+.|++++|.+++..|..|..+++|++|++++|++.+..|.. +..+++|++|++++|++++..|..++.++ 
T Consensus       371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-  449 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-  449 (606)
T ss_dssp             TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-
T ss_pred             hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC-
Confidence            6888888999999998888888888888888999999998888776554 88888899999999988888777776543 


Q ss_pred             ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCC---CCccccCCCC
Q 001036          932 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH---IPPQIGNLTR 1008 (1180)
Q Consensus       932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~---~p~~~~~l~~ 1008 (1180)
                                                                          .|+.|++++|++++.   .+..+..+++
T Consensus       450 ----------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~~~~l~~  477 (606)
T 3t6q_A          450 ----------------------------------------------------ALQHLNLQGNHFPKGNIQKTNSLQTLGR  477 (606)
T ss_dssp             ----------------------------------------------------TCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred             ----------------------------------------------------CCCEEECCCCCCCccccccchhhccCCC
Confidence                                                                688888999888763   3356888888


Q ss_pred             CCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCC
Q 001036         1009 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDG 1088 (1180)
Q Consensus      1009 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~ 1088 (1180)
                      |++|++++|++++.+|..|+++++|+.|||++|++++.+|..+..++.| +|++++|++++.+|..+..+..+...++.|
T Consensus       478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  556 (606)
T 3t6q_A          478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ  556 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred             ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence            9999999999988888888888899999999999988888888888888 889999998888887677778888888889


Q ss_pred             CCCCCCCCC
Q 001036         1089 NPFLCGLPL 1097 (1180)
Q Consensus      1089 N~~lc~~~l 1097 (1180)
                      ||+.|.|+.
T Consensus       557 N~~~c~c~~  565 (606)
T 3t6q_A          557 NPLDCTCSN  565 (606)
T ss_dssp             CCEECSGGG
T ss_pred             CCccccCCc
Confidence            998888764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-49  Score=492.37  Aligned_cols=514  Identities=19%  Similarity=0.173  Sum_probs=402.4

Q ss_pred             CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036          466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF  545 (1180)
Q Consensus       466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l  545 (1180)
                      +++++|++++|.+++..+..|.++++|++|++++|.+++ +++..|.++++|++|++++|.+++. +...|.++++|++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L  109 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENL  109 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEE
Confidence            456666666666666555566666666666666666653 3345566666666666666665532 22334444444444


Q ss_pred             ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036          546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN  625 (1180)
Q Consensus       546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~  625 (1180)
                      ++++|                                                   .+.+..|.. +.++++|++|++++
T Consensus       110 ~L~~n---------------------------------------------------~l~~~~~~~-~~~l~~L~~L~L~~  137 (606)
T 3vq2_A          110 VAVET---------------------------------------------------KLASLESFP-IGQLITLKKLNVAH  137 (606)
T ss_dssp             ECTTS---------------------------------------------------CCCCSSSSC-CTTCTTCCEEECCS
T ss_pred             EccCC---------------------------------------------------ccccccccc-cCCCCCCCEEeCCC
Confidence            44444                                                   443322222 56888999999999


Q ss_pred             CcccC-CCCCCCCCCCCccEEEccCCcccccCChhhhhcCCC----CcEEEccCCcCCccCCccccCcccCcEEEccCcc
Q 001036          626 DSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS----LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK  700 (1180)
Q Consensus       626 n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~----L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~  700 (1180)
                      |.+++ .+|..+..+++|++|++++|.+++..|..+.. +++    +.+|++++|.+++..+..+... +|+.|++++|.
T Consensus       138 n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~  215 (606)
T 3vq2_A          138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNF  215 (606)
T ss_dssp             SCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred             CcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCc
Confidence            99986 56888899999999999999998665654443 444    4589999999997777776665 89999999999


Q ss_pred             cccccChhhhhcCCCCCEEEccCCcccc------cccccccCCc--cCceeec-cCCcccccCCCcCCCCCCCcEEECcC
Q 001036          701 LTGEIPDHLAMCCVNLEFLSLSNNSLKG------HIFSRIFSLR--NLRWLLL-EGNHFVGEIPQSLSKCSSLKGLYLNN  771 (1180)
Q Consensus       701 l~~~ip~~~~~~~~~L~~L~L~~n~l~~------~~~~~~~~l~--~L~~L~L-~~n~l~~~~p~~~~~l~~L~~L~l~~  771 (1180)
                      +++......+..+++|+.+++..+.+.+      ..+..+..+.  .++.+++ ..|.+.+..|. +..+++|+.|++++
T Consensus       216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~  294 (606)
T 3vq2_A          216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAG  294 (606)
T ss_dssp             SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEES
T ss_pred             cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecC
Confidence            8755555555789999988886554432      1122222222  4666777 77888888887 88999999999999


Q ss_pred             CcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccc--c
Q 001036          772 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ--L  849 (1180)
Q Consensus       772 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~--~  849 (1180)
                      |.+. .+| ++..+++|++|++++|.+ +.+| .+ .+++|+.|++++|+..+.++ ....++|++|++++|.+++.  +
T Consensus       295 ~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~  368 (606)
T 3vq2_A          295 VSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISFK-KVALPSLSYLDLSRNALSFSGCC  368 (606)
T ss_dssp             CCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEECC-CCCCTTCCEEECCSSCEEEEEEC
T ss_pred             ccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccchh-hccCCCCCEEECcCCccCCCcch
Confidence            9996 566 888999999999999999 6778 45 89999999999997666553 33567899999999998865  3


Q ss_pred             CcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCC-ccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036          850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDN  928 (1180)
Q Consensus       850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  928 (1180)
                      |. .+..+++|+.|++++|.+++ +|..+.++++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+++
T Consensus       369 ~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  446 (606)
T 3vq2_A          369 SY-SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG  446 (606)
T ss_dssp             CH-HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred             hh-hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC
Confidence            55 78899999999999999985 66889999999999999999998888 68999999999999999999988888766


Q ss_pred             cccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccC-CCCccccCCC
Q 001036          929 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLT 1007 (1180)
Q Consensus       929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~~p~~~~~l~ 1007 (1180)
                      ++                                                     .|+.|++++|++++ .+|..|++++
T Consensus       447 l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~~l~  473 (606)
T 3vq2_A          447 LT-----------------------------------------------------SLNTLKMAGNSFKDNTLSNVFANTT  473 (606)
T ss_dssp             CT-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             CC-----------------------------------------------------CCCEEECCCCcCCCcchHHhhccCC
Confidence            44                                                     79999999999998 4788999999


Q ss_pred             CCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccc-cCCcccc
Q 001036         1008 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA-TFNKSSY 1086 (1180)
Q Consensus      1008 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~-~~~~~~~ 1086 (1180)
                      +|++|+|++|++++.+|..|+++++|+.|+|++|++++.+|..+..+++|+.|++++|+++ .+|..+..+. ++...++
T Consensus       474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l  552 (606)
T 3vq2_A          474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNL  552 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEc
Confidence            9999999999999999999999999999999999999999999999999999999999999 5666566665 4888899


Q ss_pred             CCCCCCCCCCCC
Q 001036         1087 DGNPFLCGLPLP 1098 (1180)
Q Consensus      1087 ~~N~~lc~~~l~ 1098 (1180)
                      .+||+.|+|+..
T Consensus       553 ~~N~~~c~c~~~  564 (606)
T 3vq2_A          553 TNNSVACICEHQ  564 (606)
T ss_dssp             CSCCCCCSSTTH
T ss_pred             cCCCcccCCccH
Confidence            999999999865

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.4e-49  Score=486.85  Aligned_cols=502  Identities=21%  Similarity=0.186  Sum_probs=334.4

Q ss_pred             ccCCCCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCC
Q 001036          461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHS  540 (1180)
Q Consensus       461 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  540 (1180)
                      .+..+++|++|++++|.+.+..|..|+++++|++|++++|.+++.. +..+.++++|++|++++|.+++ ++...+.+++
T Consensus        52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~  129 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISS-IDFIPLHNQK  129 (606)
T ss_dssp             TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEEC-TTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCT
T ss_pred             HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccC-hhhhcccccccEeeccccCccc-CCcchhccCC
Confidence            4566677777777777777766777777777777777777776433 5667777777777777777663 2233466677


Q ss_pred             CCcEEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCccc-
Q 001036          541 KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE-  619 (1180)
Q Consensus       541 ~L~~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~-  619 (1180)
                      +|++|++++|.+.+...                          |.+.. +++|+.|++++|.+.+..|.. +..+++|+ 
T Consensus       130 ~L~~L~L~~n~l~~~~~--------------------------~~~~~-l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~  181 (606)
T 3t6q_A          130 TLESLYLGSNHISSIKL--------------------------PKGFP-TEKLKVLDFQNNAIHYLSKED-MSSLQQATN  181 (606)
T ss_dssp             TCCEEECCSSCCCCCCC--------------------------CTTCC-CTTCCEEECCSSCCCEECHHH-HHTTTTCCS
T ss_pred             cccEEECCCCcccccCc--------------------------ccccC-CcccCEEEcccCcccccChhh-hhhhcccce
Confidence            77777777776553221                          11111 455666666666666544443 45677777 


Q ss_pred             -EEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccC
Q 001036          620 -FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN  698 (1180)
Q Consensus       620 -~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~  698 (1180)
                       .|++++|.+++..+..+.. ..|+.|++++|..   ++..+. .+..+....+....+.+           +...    
T Consensus       182 l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~-~l~~~~l~~l~~~~~~~-----------~~~~----  241 (606)
T 3t6q_A          182 LSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFK-GLKNSTIQSLWLGTFED-----------MDDE----  241 (606)
T ss_dssp             EEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHH-HTTTCEEEEEECCCCTT-----------SCCC----
T ss_pred             eEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhh-hccccchhheechhhcc-----------cccc----
Confidence             6777777777665555433 5677777777652   222222 24444433332222211           0000    


Q ss_pred             cccccccChhhhhcC--CCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCC
Q 001036          699 NKLTGEIPDHLAMCC--VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG  776 (1180)
Q Consensus       699 n~l~~~ip~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  776 (1180)
                           .++...+.++  .+|+.|++++|.+++..+..|..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+
T Consensus       242 -----~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~  315 (606)
T 3t6q_A          242 -----DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN  315 (606)
T ss_dssp             -----CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSB
T ss_pred             -----ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCc
Confidence                 1111111111  14555555555555555555555555555555555555 445555555555555555555554


Q ss_pred             CCcccccCCCCCCeEEccCCcCCCCCCcc-ccCCCCCCEEEccCCcccccC--CCCc-CCCcccEEEcCCcccccccCcc
Q 001036          777 KIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSL--PSCF-YPLSIKQVHLSKNMLHGQLKEG  852 (1180)
Q Consensus       777 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--p~~~-~~~~L~~L~l~~n~~~~~~~~~  852 (1180)
                      ..|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|++++..  |..+ ..++|++|++++|.+.+..|. 
T Consensus       316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-  394 (606)
T 3t6q_A          316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-  394 (606)
T ss_dssp             GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-
T ss_pred             CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-
Confidence            44555555555555555555555444332 555555666666665555443  3322 234566666666665554444 


Q ss_pred             cccCCCCCcEEECcCccCccccch-hhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccC-C--CCccC
Q 001036          853 TFFNCSSLVTLDLSYNYLNGSIPD-WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI-P--SCFDN  928 (1180)
Q Consensus       853 ~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p--~~~~~  928 (1180)
                      .|.++++|+.|++++|++++..|. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++++.. |  ..+..
T Consensus       395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  474 (606)
T 3t6q_A          395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT  474 (606)
T ss_dssp             TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred             HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence            788899999999999999877654 4899999999999999999988999999999999999999998732 2  22332


Q ss_pred             cccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCC
Q 001036          929 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTR 1008 (1180)
Q Consensus       929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~ 1008 (1180)
                                                                           ++.|+.|++++|++++.+|..|+++++
T Consensus       475 -----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~  501 (606)
T 3t6q_A          475 -----------------------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKM  501 (606)
T ss_dssp             -----------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             -----------------------------------------------------CCCccEEECCCCccCccChhhhccccC
Confidence                                                                 447999999999999999999999999


Q ss_pred             CCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036         1009 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus      1009 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      |+.|+|++|++++.+|+.|++++.| .||+++|++++.+|..+..+++|+.+++++|++++.++.
T Consensus       502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            9999999999999999999999999 999999999999999999999999999999999998773

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.3e-48  Score=479.02  Aligned_cols=516  Identities=21%  Similarity=0.189  Sum_probs=375.2

Q ss_pred             CCcceeeeccCcccCCCCccccccccCCCCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCC
Q 001036          437 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS  516 (1180)
Q Consensus       437 ~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~  516 (1180)
                      .+.++.++++++.+..    ..+..+..+++|++|++++|.+++..|..|+++++|++|++++|.+++. ++..+.++++
T Consensus        31 ~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~  105 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKI----LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTS  105 (606)
T ss_dssp             CTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTT
T ss_pred             CCCcCEEECCCCCcCE----eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCccc
Confidence            4789999999988743    3345788899999999999999998899999999999999999999854 4788999999


Q ss_pred             CCEEEccCCccccccCcccccCCCCCcEEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEE
Q 001036          517 IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA  596 (1180)
Q Consensus       517 L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l  596 (1180)
                      |++|++++|.+.+ ++...+.++++|++|++++|.+.+                          ..+|..+.++++|+.|
T Consensus       106 L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~--------------------------~~lp~~~~~l~~L~~L  158 (606)
T 3vq2_A          106 LENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHS--------------------------CKLPAYFSNLTNLVHV  158 (606)
T ss_dssp             CCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCCC--------------------------CCCCGGGGTCTTCCEE
T ss_pred             CCEEEccCCcccc-ccccccCCCCCCCEEeCCCCcccc--------------------------eechHhHhhcCCCCEE
Confidence            9999999999974 443457888888888888776542                          2356667777888888


Q ss_pred             EcCCCcccccCChhhhhcCCcc----cEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEc
Q 001036          597 ELSHIKMIGEFPNWLLENNTKL----EFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNI  672 (1180)
Q Consensus       597 ~l~~~~~~~~~p~~~~~~~~~L----~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l  672 (1180)
                      ++++|.+.+..|.. +..+++|    ..+++++|.+++..+..+... +|+.|++++|.+.+.........++.++.+++
T Consensus       159 ~Ls~n~l~~~~~~~-~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l  236 (606)
T 3vq2_A          159 DLSYNYIQTITVND-LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL  236 (606)
T ss_dssp             ECCSSCCCEECTTT-THHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEE
T ss_pred             EccCCcceecChhh-hhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccc
Confidence            88888877765544 3344444    367777777766555544444 67777777776654333333334666666666


Q ss_pred             cCCcCCcc------CCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEc-cCCcccccccccccCCccCceeec
Q 001036          673 SMNALDGS------IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL-SNNSLKGHIFSRIFSLRNLRWLLL  745 (1180)
Q Consensus       673 s~n~l~~~------~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L  745 (1180)
                      ..+.+.+.      .+..+.++..                       ..++.+++ ..|.+.+..|. +..+++|+.|++
T Consensus       237 ~~~~~~~~~~l~~~~~~~~~~l~~-----------------------l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l  292 (606)
T 3vq2_A          237 ILGEFKDERNLEIFEPSIMEGLCD-----------------------VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSL  292 (606)
T ss_dssp             EEECCTTSCCCSCCCGGGGTTGGG-----------------------SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEE
T ss_pred             cccccccCCcccccChHHhhhhhh-----------------------ccHhheeccccccccccccc-cccCCCCCEEEe
Confidence            54433321      1111111111                       12344444 44445554444 555555555555


Q ss_pred             cCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 001036          746 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS  825 (1180)
Q Consensus       746 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  825 (1180)
                      ++|.+.. +| .+..+++|++|++++|.+ +.+|. + .+++|++|++++|+..+.+  .+..+++|++|++++|++++.
T Consensus       293 ~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~  365 (606)
T 3vq2_A          293 AGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFS  365 (606)
T ss_dssp             ESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEE
T ss_pred             cCccchh-hh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCC
Confidence            5555542 33 455555566666666655 35553 2 5556666666655433322  344556666666666665543


Q ss_pred             --CCCCc-CCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccc-hhhhcCCCCCEEecCCCccccCCCcc
Q 001036          826 --LPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQ  901 (1180)
Q Consensus       826 --~p~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~  901 (1180)
                        +|..+ ...+|++|++++|.+.+ +|. .+.++++|+.|++++|++++..| ..+.++++|++|++++|++.+..|..
T Consensus       366 ~~~~~~~~~~~~L~~L~L~~n~l~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  443 (606)
T 3vq2_A          366 GCCSYSDLGTNSLRHLDLSFNGAII-MSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI  443 (606)
T ss_dssp             EECCHHHHCCSCCCEEECCSCSEEE-ECC-CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred             cchhhhhccCCcccEeECCCCcccc-chh-hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence              13222 23456666666666553 554 78899999999999999998888 78999999999999999999999999


Q ss_pred             ccCCCCCCEEECcCCcCcc-cCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccch
Q 001036          902 LCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR  980 (1180)
Q Consensus       902 ~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  980 (1180)
                      +..+++|++|++++|++++ .+|..|+.++                                                  
T Consensus       444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~--------------------------------------------------  473 (606)
T 3vq2_A          444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTT--------------------------------------------------  473 (606)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCT--------------------------------------------------
T ss_pred             hcCCCCCCEEECCCCcCCCcchHHhhccCC--------------------------------------------------
Confidence            9999999999999999998 4677776644                                                  


Q ss_pred             hccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCC-CCCE
Q 001036          981 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN-TLAI 1059 (1180)
Q Consensus       981 ~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-~L~~ 1059 (1180)
                         .|+.|||++|++++.+|..|+++++|++|+|++|++++.+|..|+++++|+.|||++|+++ .+|..+..++ +|++
T Consensus       474 ---~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~  549 (606)
T 3vq2_A          474 ---NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF  549 (606)
T ss_dssp             ---TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred             ---CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence               7999999999999999999999999999999999999999999999999999999999999 7888899997 5999


Q ss_pred             EEcCCCcCcccCCC
Q 001036         1060 FIVAYNNLSGKIPE 1073 (1180)
Q Consensus      1060 l~ls~N~l~g~ip~ 1073 (1180)
                      +++++|++.+..|.
T Consensus       550 l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          550 FNLTNNSVACICEH  563 (606)
T ss_dssp             EECCSCCCCCSSTT
T ss_pred             EEccCCCcccCCcc
Confidence            99999999998774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5e-45  Score=447.67  Aligned_cols=491  Identities=21%  Similarity=0.253  Sum_probs=353.0

Q ss_pred             CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036          466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF  545 (1180)
Q Consensus       466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l  545 (1180)
                      ++++.|++++|.+++..+..|..+++|++|++++|+++ .+++..+.++++|++|++++|.++. ++...|.++++|++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccc
Confidence            46888899988888877778888888999999888887 4556778888888888888888763 444557777777777


Q ss_pred             ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036          546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN  625 (1180)
Q Consensus       546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~  625 (1180)
                      ++++|.+......                                                    .+.++++|++|++++
T Consensus       106 ~L~~n~l~~l~~~----------------------------------------------------~~~~l~~L~~L~L~~  133 (570)
T 2z63_A          106 VAVETNLASLENF----------------------------------------------------PIGHLKTLKELNVAH  133 (570)
T ss_dssp             ECTTSCCCCSTTC----------------------------------------------------SCTTCTTCCEEECCS
T ss_pred             cccccccccCCCc----------------------------------------------------cccccccccEEecCC
Confidence            7777765532211                                                    023455555555555


Q ss_pred             CcccC-CCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCC----cEEEccCCcCCccCCccccCcccCcEEEccCcc
Q 001036          626 DSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL----VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK  700 (1180)
Q Consensus       626 n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L----~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~  700 (1180)
                      |.+++ .+|..+..+++|++|++++|.+++..|..+.. +++|    +.+++++|.+++..|..+... +|+.|++++|.
T Consensus       134 n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~  211 (570)
T 2z63_A          134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNF  211 (570)
T ss_dssp             SCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred             CccceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccc
Confidence            55554 23455556666677777777666444443333 5555    677777777777777766655 67777777775


Q ss_pred             cccccChhhhhcCCCCCEEEccCCcc------cccccccccCCc--cCceeeccCC-cccccCCCcCCCCCCCcEEECcC
Q 001036          701 LTGEIPDHLAMCCVNLEFLSLSNNSL------KGHIFSRIFSLR--NLRWLLLEGN-HFVGEIPQSLSKCSSLKGLYLNN  771 (1180)
Q Consensus       701 l~~~ip~~~~~~~~~L~~L~L~~n~l------~~~~~~~~~~l~--~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~  771 (1180)
                      .....-......++.++...+....+      .......+..++  .++.++++++ .+.+..|..+..+++|+.|++++
T Consensus       212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  291 (570)
T 2z63_A          212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS  291 (570)
T ss_dssp             SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred             ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence            43222222334566666655543222      112222333333  3566677776 67777778888888888888888


Q ss_pred             CcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccccc--
Q 001036          772 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL--  849 (1180)
Q Consensus       772 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~--  849 (1180)
                      |.+. .+|.++..+ +|++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+. ...++|+.|++++|.+.+..  
T Consensus       292 ~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~  365 (570)
T 2z63_A          292 VTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCC  365 (570)
T ss_dssp             CEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEE
T ss_pred             ccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccc
Confidence            8887 577777777 8888888888887 4554  4677888888888888766655 45567788888888776543  


Q ss_pred             CcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCC-ccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036          850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDN  928 (1180)
Q Consensus       850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  928 (1180)
                      +. .+.++++|+.|++++|.+++..+. +..+++|++|++++|.+.+..| ..+..+++|++|++++|++++..|..|..
T Consensus       366 ~~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  443 (570)
T 2z63_A          366 SQ-SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  443 (570)
T ss_dssp             EH-HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred             cc-cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence            34 677888888888888888865554 8888888888888888887665 46788888888888888888877777655


Q ss_pred             cccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCccc-CCCCccccCCC
Q 001036          929 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV-GHIPPQIGNLT 1007 (1180)
Q Consensus       929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~~p~~~~~l~ 1007 (1180)
                      ++                                                     .|+.|++++|+++ +.+|..++.++
T Consensus       444 l~-----------------------------------------------------~L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          444 LS-----------------------------------------------------SLEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             CT-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             CC-----------------------------------------------------cCcEEECcCCcCccccchhhhhccc
Confidence            43                                                     6888888888887 57888888888


Q ss_pred             CCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036         1008 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus      1008 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      +|++|+|++|++++..|..|+++++|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|.
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            888888888888888888888888888888888888888888888888888888888888888875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.9e-46  Score=457.62  Aligned_cols=380  Identities=21%  Similarity=0.278  Sum_probs=242.0

Q ss_pred             CcccccCChhhhhcCCCCcEEEccCCcCCcc-----------------CCcccc--CcccCcEEEccCcccccccChhhh
Q 001036          650 NNFQGHIPVEIGDILPSLVYFNISMNALDGS-----------------IPSSFG--NVIFLQFLDLSNNKLTGEIPDHLA  710 (1180)
Q Consensus       650 n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~~~ip~~~~  710 (1180)
                      |.++| +|..++. +++|++|++++|.+++.                 +|..++  ++++|++|++++|++.+.+|..+ 
T Consensus       193 n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-  269 (636)
T 4eco_A          193 NNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-  269 (636)
T ss_dssp             CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-
T ss_pred             CCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-
Confidence            44444 5544443 45555555555555543                 555555  55555555555555555555444 


Q ss_pred             hcCCCCCEEEccCCc-ccc-cccccccCC------ccCceeeccCCcccccCCC--cCCCCCCCcEEECcCCcCCCCCcc
Q 001036          711 MCCVNLEFLSLSNNS-LKG-HIFSRIFSL------RNLRWLLLEGNHFVGEIPQ--SLSKCSSLKGLYLNNNNLSGKIPR  780 (1180)
Q Consensus       711 ~~~~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~  780 (1180)
                      .++++|++|++++|+ +++ .+|..++.+      ++|++|++++|+++ .+|.  .++++++|++|++++|+++|.+| 
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            245555555555555 555 455554444      55555555555555 4555  55555555555555555555555 


Q ss_pred             cccCCCCCCeEEccCCcCCCCCCccccCCCC-CCEEEccCCcccccCCCCcCCC---cccEEEcCCcccccccCccccc-
Q 001036          781 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILDISDNNISGSLPSCFYPL---SIKQVHLSKNMLHGQLKEGTFF-  855 (1180)
Q Consensus       781 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~---~L~~L~l~~n~~~~~~~~~~~~-  855 (1180)
                      .++.+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+...   +|+.|++++|.+.+.+|. .+. 
T Consensus       348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~  424 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK-NFDP  424 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC-SSCT
T ss_pred             hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh-hhcc
Confidence            5555555555555555555 45555555555 666666666555 455444322   455555555555555554 444 


Q ss_pred             ------CCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCcc-ccCC-------CCCCEEECcCCcCccc
Q 001036          856 ------NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRL-------NQLQLLDLSDNNLHGL  921 (1180)
Q Consensus       856 ------~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l-------~~L~~L~Ls~N~l~~~  921 (1180)
                            .+++|+.|++++|.+++..+..+..+++|++|+|++|+++ .+|.. +...       ++|++|+|++|+++ .
T Consensus       425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  502 (636)
T 4eco_A          425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K  502 (636)
T ss_dssp             TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred             cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence                  6678889999999988555556677888999999999888 55544 3333       28999999999988 5


Q ss_pred             CCCCcc--CcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCC
Q 001036          922 IPSCFD--NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI  999 (1180)
Q Consensus       922 ~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~  999 (1180)
                      +|..+.  .                                                     ++.|+.|||++|++++ +
T Consensus       503 lp~~~~~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~-i  528 (636)
T 4eco_A          503 LSDDFRATT-----------------------------------------------------LPYLVGIDLSYNSFSK-F  528 (636)
T ss_dssp             CCGGGSTTT-----------------------------------------------------CTTCCEEECCSSCCSS-C
T ss_pred             cChhhhhcc-----------------------------------------------------CCCcCEEECCCCCCCC-c
Confidence            565543  3                                                     3378889999999987 8


Q ss_pred             CccccCCCCCCEEeC------ccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036         1000 PPQIGNLTRIQTLNL------SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus      1000 p~~~~~l~~L~~L~L------s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      |..++++++|+.|+|      ++|++.+.+|..|+++++|+.|||++|++ +.+|..+.  +.|+.||+++|++...-+.
T Consensus       529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~~  605 (636)
T 4eco_A          529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDLS  605 (636)
T ss_dssp             CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEECT
T ss_pred             ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccccHH
Confidence            888889999999999      56888999999999999999999999999 68888876  7899999999977643322


Q ss_pred             cccc--cccCCccccCCCCCCCCCC
Q 001036         1074 WTAQ--FATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus      1074 ~~~~--~~~~~~~~~~~N~~lc~~~ 1096 (1180)
                      ....  ........+..+...|+|+
T Consensus       606 ~~~~~~~~~~~~l~~~~~~~i~~C~  630 (636)
T 4eco_A          606 YVCPYIEAGMYMLFYDKTQDIRGCD  630 (636)
T ss_dssp             TTHHHHHTTCCEEECCTTSEEESCG
T ss_pred             hcchhhhcccceeecCCccccCCCc
Confidence            1111  1122233344555566654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.6e-44  Score=437.19  Aligned_cols=486  Identities=21%  Similarity=0.187  Sum_probs=375.9

Q ss_pred             EEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEc
Q 001036          544 IFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL  623 (1180)
Q Consensus       544 ~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l  623 (1180)
                      .+++++..+..++...     ...++.|++++|.... ..+..+..+++|++|++++|.+.+..| ..+.++++|++|++
T Consensus        11 ~~~c~~~~l~~ip~~l-----~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L   83 (570)
T 2z63_A           11 TYQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLIL   83 (570)
T ss_dssp             EEECCSSCCSSCCSSS-----CSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEEC
T ss_pred             EEEeCCCCccccCCCc-----cccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeC
Confidence            4555555554443321     1357778886665432 234456677778888888877665433 33567788888888


Q ss_pred             cCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCc-cCCccccCcccCcEEEccCcccc
Q 001036          624 VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG-SIPSSFGNVIFLQFLDLSNNKLT  702 (1180)
Q Consensus       624 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~  702 (1180)
                      ++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|++|++++|.+++ .+|..|+++++|++|++++|+++
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A           84 TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             cCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            888877777777777888888888888777 3443223347788888888887776 35777888888888888888777


Q ss_pred             cccChhhhhcCCCC----CEEEccCCcccccccccccCCccCceeeccCCcccc--------------------------
Q 001036          703 GEIPDHLAMCCVNL----EFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG--------------------------  752 (1180)
Q Consensus       703 ~~ip~~~~~~~~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------------------------  752 (1180)
                      + ++...+..+++|    +.+++++|.+++..+..+... +|+.|++++|....                          
T Consensus       163 ~-~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~  240 (570)
T 2z63_A          163 S-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE  240 (570)
T ss_dssp             E-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred             e-ecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence            4 333333456666    778888888877777666555 67777777763221                          


Q ss_pred             -----cCCCcCCCCC--CCcEEECcCC-cCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 001036          753 -----EIPQSLSKCS--SLKGLYLNNN-NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG  824 (1180)
Q Consensus       753 -----~~p~~~~~l~--~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  824 (1180)
                           .....+.+++  .++.++++++ .+.+..|..+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+. 
T Consensus       241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-  317 (570)
T 2z63_A          241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-  317 (570)
T ss_dssp             SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-
T ss_pred             hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-
Confidence                 0111112221  2345555555 566778888999999999999999998 578888888 9999999999998 


Q ss_pred             cCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCcccc--chhhhcCCCCCEEecCCCccccCCCccc
Q 001036          825 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI--PDWIDGLSQLSHLNLAHNNLEGEVPIQL  902 (1180)
Q Consensus       825 ~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~  902 (1180)
                      .+|. ...++|+.|++++|.+.+.++.   ..+++|+.|++++|.+++..  |..+.++++|++|++++|.+.+..+. +
T Consensus       318 ~l~~-~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~  392 (570)
T 2z63_A          318 QFPT-LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F  392 (570)
T ss_dssp             SCCB-CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E
T ss_pred             ccCc-ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-c
Confidence            6665 3567899999999998876654   67899999999999998765  78899999999999999999865554 9


Q ss_pred             cCCCCCCEEECcCCcCcccCC-CCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchh
Q 001036          903 CRLNQLQLLDLSDNNLHGLIP-SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV  981 (1180)
Q Consensus       903 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  981 (1180)
                      ..+++|++|++++|++++..| ..|.+                                                     
T Consensus       393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~-----------------------------------------------------  419 (570)
T 2z63_A          393 LGLEQLEHLDFQHSNLKQMSEFSVFLS-----------------------------------------------------  419 (570)
T ss_dssp             ETCTTCCEEECTTSEEESCTTSCTTTT-----------------------------------------------------
T ss_pred             cccCCCCEEEccCCccccccchhhhhc-----------------------------------------------------
Confidence            999999999999999998766 34444                                                     


Q ss_pred             ccccceEEccCCcccCCCCccccCCCCCCEEeCcccccc-ccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEE
Q 001036          982 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 1060 (1180)
Q Consensus       982 l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l 1060 (1180)
                      +++|+.|++++|++++.+|..+.++++|++|++++|+++ +.+|..|+.+++|+.|++++|++++..|..+..+++|++|
T Consensus       420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence            337999999999999999999999999999999999998 7899999999999999999999999999999999999999


Q ss_pred             EcCCCcCcccCCCcccccccCCccccCCCCCCCCCCCCCC
Q 001036         1061 IVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 1100 (1180)
Q Consensus      1061 ~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l~~c 1100 (1180)
                      ++++|++++.+|..+..+..+...++.+||+.|.||..++
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence            9999999999888778888999999999999999986543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.9e-44  Score=445.38  Aligned_cols=381  Identities=20%  Similarity=0.240  Sum_probs=318.2

Q ss_pred             CCcccccCChhhhhcCCCCcEEEccCCcCCc-----------------cCCcccc--CcccCcEEEccCcccccccChhh
Q 001036          649 NNNFQGHIPVEIGDILPSLVYFNISMNALDG-----------------SIPSSFG--NVIFLQFLDLSNNKLTGEIPDHL  709 (1180)
Q Consensus       649 ~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~-----------------~~p~~~~--~l~~L~~L~l~~n~l~~~ip~~~  709 (1180)
                      .|.+++ +|..+.. +++|++|++++|.+++                 .+|..++  ++++|++|++++|++.+.+|..+
T Consensus       434 ~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l  511 (876)
T 4ecn_A          434 TNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL  511 (876)
T ss_dssp             SCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred             cCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH
Confidence            378886 8988776 8999999999999998                 3888877  99999999999999998999766


Q ss_pred             hhcCCCCCEEEccCCc-ccc-cccccccCCc-------cCceeeccCCcccccCCC--cCCCCCCCcEEECcCCcCCCCC
Q 001036          710 AMCCVNLEFLSLSNNS-LKG-HIFSRIFSLR-------NLRWLLLEGNHFVGEIPQ--SLSKCSSLKGLYLNNNNLSGKI  778 (1180)
Q Consensus       710 ~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~  778 (1180)
                       ..+++|+.|++++|+ +++ .+|..++.++       +|++|++++|.++ .+|.  .++++++|+.|++++|+++ .+
T Consensus       512 -~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~l  588 (876)
T 4ecn_A          512 -YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HL  588 (876)
T ss_dssp             -GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BC
T ss_pred             -hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cc
Confidence             479999999999998 888 7888776665       9999999999999 7888  8999999999999999998 88


Q ss_pred             cccccCCCCCCeEEccCCcCCCCCCccccCCCC-CCEEEccCCcccccCCCCcCCC---cccEEEcCCcccccccCcc--
Q 001036          779 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILDISDNNISGSLPSCFYPL---SIKQVHLSKNMLHGQLKEG--  852 (1180)
Q Consensus       779 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~---~L~~L~l~~n~~~~~~~~~--  852 (1180)
                      | .++.+++|+.|++++|+++ .+|..+..+++ |+.|++++|+++ .+|..+...   +|+.|++++|.+.+.+|.-  
T Consensus       589 p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~  665 (876)
T 4ecn_A          589 E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC  665 (876)
T ss_dssp             C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred             h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence            8 8999999999999999998 88888999998 999999999998 788776543   4999999999998876641  


Q ss_pred             ccc--CCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCC--------CCCCEEECcCCcCcccC
Q 001036          853 TFF--NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL--------NQLQLLDLSDNNLHGLI  922 (1180)
Q Consensus       853 ~~~--~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l--------~~L~~L~Ls~N~l~~~~  922 (1180)
                      .+.  .+++|+.|++++|.++...+..+..+++|+.|+|++|+++ .+|..+...        ++|+.|+|++|+++ .+
T Consensus       666 ~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l  743 (876)
T 4ecn_A          666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL  743 (876)
T ss_dssp             CTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred             hhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence            122  4468999999999999544445568999999999999999 666654433        38999999999999 56


Q ss_pred             CCCcc--CcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCC
Q 001036          923 PSCFD--NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 1000 (1180)
Q Consensus       923 p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p 1000 (1180)
                      |..+.  .                                                     ++.|+.|||++|+|++ +|
T Consensus       744 p~~l~~~~-----------------------------------------------------l~~L~~L~Ls~N~L~~-lp  769 (876)
T 4ecn_A          744 SDDFRATT-----------------------------------------------------LPYLSNMDVSYNCFSS-FP  769 (876)
T ss_dssp             CGGGSTTT-----------------------------------------------------CTTCCEEECCSSCCSS-CC
T ss_pred             hHHhhhcc-----------------------------------------------------CCCcCEEEeCCCCCCc-cc
Confidence            65553  3                                                     3479999999999997 89


Q ss_pred             ccccCCCCCCEEeCcc------ccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCc
Q 001036         1001 PQIGNLTRIQTLNLSH------NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 1074 (1180)
Q Consensus      1001 ~~~~~l~~L~~L~Ls~------N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 1074 (1180)
                      ..++++++|+.|+|++      |++.+.+|..|+++++|+.|+|++|++ +.+|..+.  ++|+.||+++|++...-+..
T Consensus       770 ~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~  846 (876)
T 4ecn_A          770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTS  846 (876)
T ss_dssp             CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGG
T ss_pred             hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHH
Confidence            9999999999999976      889999999999999999999999999 79999876  69999999999998655543


Q ss_pred             ccccccCCccccCCCCCCC--CCC
Q 001036         1075 TAQFATFNKSSYDGNPFLC--GLP 1096 (1180)
Q Consensus      1075 ~~~~~~~~~~~~~~N~~lc--~~~ 1096 (1180)
                      +..........+.+|+..+  ||+
T Consensus       847 ~~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          847 VCPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             GHHHHHTTCCEEECCTTSEEESCG
T ss_pred             ccccccchheeecCCCccccCCCC
Confidence            4333334445556665544  664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.5e-44  Score=434.66  Aligned_cols=397  Identities=19%  Similarity=0.207  Sum_probs=291.9

Q ss_pred             hhcCCcccEEEccCCcccCC-CCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCccc
Q 001036          612 LENNTKLEFLYLVNDSLAGP-FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF  690 (1180)
Q Consensus       612 ~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~  690 (1180)
                      +.++++|++|++++|.+++. .+..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..++.+++
T Consensus        94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  173 (549)
T 2z81_A           94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD  173 (549)
T ss_dssp             HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred             hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence            34556666666666666542 34456677777777777777555666544445778888888888888777888888888


Q ss_pred             CcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccc---cccccCCccCceeeccCCcccccCC----CcCCCCCC
Q 001036          691 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI---FSRIFSLRNLRWLLLEGNHFVGEIP----QSLSKCSS  763 (1180)
Q Consensus       691 L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~  763 (1180)
                      |+.|++++|.+. .+|..++..+++|++|++++|++++..   ......+++|+.|++++|.+++..+    ..+..+++
T Consensus       174 L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~  252 (549)
T 2z81_A          174 IHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE  252 (549)
T ss_dssp             EEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred             CceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence            888888888775 667666666788888888888877642   1223456778888888887765433    23456677


Q ss_pred             CcEEECcCCcCCCCC------cccccCCCCCCeEEccCCcCCCC-----CCccccCCCCCCEEEccCCcccccCCCCc--
Q 001036          764 LKGLYLNNNNLSGKI------PRWLGNLKGLQHIVMPKNHLEGP-----IPVEFCRLDSLQILDISDNNISGSLPSCF--  830 (1180)
Q Consensus       764 L~~L~l~~n~l~~~~------p~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~--  830 (1180)
                      |+.+++++|.+.+..      ...+..+++|+.|++.++.+...     ++..+...++|+.|++++|++. .+|..+  
T Consensus       253 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~  331 (549)
T 2z81_A          253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ  331 (549)
T ss_dssp             CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHH
T ss_pred             ccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHh
Confidence            888888887765421      12345667788888877765432     1222334567888888888876 566554  


Q ss_pred             CCCcccEEEcCCcccccccCc--ccccCCCCCcEEECcCccCccccc--hhhhcCCCCCEEecCCCccccCCCccccCCC
Q 001036          831 YPLSIKQVHLSKNMLHGQLKE--GTFFNCSSLVTLDLSYNYLNGSIP--DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN  906 (1180)
Q Consensus       831 ~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  906 (1180)
                      ...+|++|++++|.+.+.+|.  ..+..+++|+.|++++|++++..+  ..++.+++|++|++++|+++ .+|..+..++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~  410 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE  410 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence            356788888888888776653  246788999999999999986543  56888999999999999998 6788888899


Q ss_pred             CCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccc
Q 001036          907 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA  986 (1180)
Q Consensus       907 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  986 (1180)
                      +|++|++++|++++. |..+                                                       .+.|+
T Consensus       411 ~L~~L~Ls~N~l~~l-~~~~-------------------------------------------------------~~~L~  434 (549)
T 2z81_A          411 KMRFLNLSSTGIRVV-KTCI-------------------------------------------------------PQTLE  434 (549)
T ss_dssp             TCCEEECTTSCCSCC-CTTS-------------------------------------------------------CTTCS
T ss_pred             cccEEECCCCCcccc-cchh-------------------------------------------------------cCCce
Confidence            999999999998743 2211                                                       12688


Q ss_pred             eEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCc
Q 001036          987 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 1066 (1180)
Q Consensus       987 ~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~ 1066 (1180)
                      .|||++|++++.+    +++++|++|+|++|+|+ .+|. .+.+++|+.|||++|++++.+|..+..+++|+.|++++|+
T Consensus       435 ~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          435 VLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             EEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             EEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence            8999999998753    57889999999999998 6776 4678999999999999999888889999999999999999


Q ss_pred             CcccCCC
Q 001036         1067 LSGKIPE 1073 (1180)
Q Consensus      1067 l~g~ip~ 1073 (1180)
                      ++|.+|.
T Consensus       509 ~~~~~~~  515 (549)
T 2z81_A          509 WDCSCPR  515 (549)
T ss_dssp             BCCCHHH
T ss_pred             ccCCCcc
Confidence            9988873

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.2e-45  Score=450.39  Aligned_cols=444  Identities=18%  Similarity=0.239  Sum_probs=365.7

Q ss_pred             CcccEEEcCCCcccccCChhhhhcCCcccEEEccCCccc------C------CCCCCCCCCCCccEEEccCCcccccCCh
Q 001036          591 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLA------G------PFRLPIHSHKRLRFLDVSNNNFQGHIPV  658 (1180)
Q Consensus       591 ~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~------~------~~~~~~~~~~~L~~L~l~~n~l~~~ip~  658 (1180)
                      ..++.|+++++.+.|.+|+. +++++.|+.|++++|.+.      +      .+|..  .+..++ +++++|.+.+.+|.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~--~~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE--QKQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHH--HHHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChH-HhcCccceEEECcCCccccCCccccccccccCchHH--HHHHHH-hhHHHhhhccCchh
Confidence            35777888888888888876 468888888888888652      2      11111  134556 67777777766665


Q ss_pred             hhhhcCC------------------CCcEEEcc--CCcCCccCCccccCcccCcEEEccCcccccc--------------
Q 001036          659 EIGDILP------------------SLVYFNIS--MNALDGSIPSSFGNVIFLQFLDLSNNKLTGE--------------  704 (1180)
Q Consensus       659 ~~~~~l~------------------~L~~L~ls--~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--------------  704 (1180)
                      .+...+.                  .++.+.+.  .|++++ +|..++++++|++|++++|+++|.              
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence            5542221                  22222222  688998 899999999999999999999975              


Q ss_pred             ---cChhhh-hcCCCCCEEEccCCcccccccccccCCccCceeeccCCc-ccc-cCCCcCCCC------CCCcEEECcCC
Q 001036          705 ---IPDHLA-MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH-FVG-EIPQSLSKC------SSLKGLYLNNN  772 (1180)
Q Consensus       705 ---ip~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~l~~n  772 (1180)
                         +|+.+. .++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+      ++|++|++++|
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence               888763 279999999999999999999999999999999999998 998 889888776      99999999999


Q ss_pred             cCCCCCcc--cccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcC-CCc-ccEEEcCCcccccc
Q 001036          773 NLSGKIPR--WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLS-IKQVHLSKNMLHGQ  848 (1180)
Q Consensus       773 ~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~-L~~L~l~~n~~~~~  848 (1180)
                      +++ .+|.  .++++++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|..+. ..+ |+.|++++|.+. .
T Consensus       316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~  391 (636)
T 4eco_A          316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y  391 (636)
T ss_dssp             CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred             cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence            999 8898  89999999999999999999999 8999999999999999998 7777664 356 999999999998 7


Q ss_pred             cCcccccCCC--CCcEEECcCccCccccchhhh-------cCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCc
Q 001036          849 LKEGTFFNCS--SLVTLDLSYNYLNGSIPDWID-------GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH  919 (1180)
Q Consensus       849 ~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  919 (1180)
                      +|. .+..++  +|+.|++++|.+++.+|..|.       .+++|++|++++|++++..+..+..+++|++|+|++|+++
T Consensus       392 lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          392 IPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             cch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            887 676654  899999999999999999998       8889999999999999544455667999999999999999


Q ss_pred             ccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCC
Q 001036          920 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI  999 (1180)
Q Consensus       920 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~  999 (1180)
                      ...+..+....                                              ...+.++.|+.|||++|+++ .+
T Consensus       471 ~i~~~~~~~~~----------------------------------------------~~~~~l~~L~~L~Ls~N~l~-~l  503 (636)
T 4eco_A          471 EIPKNSLKDEN----------------------------------------------ENFKNTYLLTSIDLRFNKLT-KL  503 (636)
T ss_dssp             BCCSSSSEETT----------------------------------------------EECTTGGGCCEEECCSSCCC-BC
T ss_pred             CcCHHHhcccc----------------------------------------------ccccccCCccEEECcCCcCC-cc
Confidence            43333333211                                              00012447999999999999 78


Q ss_pred             Ccccc--CCCCCCEEeCccccccccccccccCCCCCCEEEC------cCCcCcccCCccccCCCCCCEEEcCCCcCcccC
Q 001036         1000 PPQIG--NLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL------SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 1071 (1180)
Q Consensus      1000 p~~~~--~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L------s~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~i 1071 (1180)
                      |..+.  .+++|+.|+|++|++++ +|..++++++|+.|+|      ++|++.+.+|..+..++.|+.|++++|++ +.+
T Consensus       504 p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i  581 (636)
T 4eco_A          504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV  581 (636)
T ss_dssp             CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred             ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence            98887  99999999999999998 9999999999999999      56889999999999999999999999999 788


Q ss_pred             CCcccccccCCccccCCCCCCCCC
Q 001036         1072 PEWTAQFATFNKSSYDGNPFLCGL 1095 (1180)
Q Consensus      1072 p~~~~~~~~~~~~~~~~N~~lc~~ 1095 (1180)
                      |....  .++...++.+||..|-.
T Consensus       582 p~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          582 NEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CSCCC--TTCCEEECCSCTTCEEE
T ss_pred             CHhHh--CcCCEEECcCCCCcccc
Confidence            87543  67888889999988854

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.5e-43  Score=427.77  Aligned_cols=467  Identities=20%  Similarity=0.212  Sum_probs=342.1

Q ss_pred             CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036          466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF  545 (1180)
Q Consensus       466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l  545 (1180)
                      ++|++|++++|.+++..|..|.++++|++|++++|++++ +++..+.++++|++|++++|.+++ ++...+.++++|++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEE
Confidence            689999999999988888889999999999999999884 446788899999999999998874 444557888888888


Q ss_pred             ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036          546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN  625 (1180)
Q Consensus       546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~  625 (1180)
                      ++++|.+...                          ..|..+..+++|++|++++|...+.+|...+.++++|+.|++++
T Consensus       104 ~Ls~n~l~~~--------------------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A          104 NLMGNPYQTL--------------------------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             ECTTCCCSSS--------------------------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             ECCCCccccc--------------------------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            8888876532                          22344566778888888888877778766677899999999999


Q ss_pred             CcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccC--C-ccccCcccCcEEEccCcccc
Q 001036          626 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI--P-SSFGNVIFLQFLDLSNNKLT  702 (1180)
Q Consensus       626 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~--p-~~~~~l~~L~~L~l~~n~l~  702 (1180)
                      |.+++..+..+..+++|++|+++.|.+. .+|..+...+++|++|++++|.+++..  | .....+++|+.|++++|.++
T Consensus       158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  236 (549)
T 2z81_A          158 LSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT  236 (549)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred             CcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence            9999888888999999999999999886 677776666889999999999998742  2 23345778888999988887


Q ss_pred             cccChhhh---hcCCCCCEEEccCCcccccc------cccccCCccCceeeccCCcccccC-----CCcCCCCCCCcEEE
Q 001036          703 GEIPDHLA---MCCVNLEFLSLSNNSLKGHI------FSRIFSLRNLRWLLLEGNHFVGEI-----PQSLSKCSSLKGLY  768 (1180)
Q Consensus       703 ~~ip~~~~---~~~~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~  768 (1180)
                      +..+..+.   ..+++|+.+++++|.+.+..      ...+..+++|+.|++.++.+....     +..+...++|+.|+
T Consensus       237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~  316 (549)
T 2z81_A          237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT  316 (549)
T ss_dssp             HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred             hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence            65554432   34567777777777765431      122334455555555555443210     00111223445555


Q ss_pred             CcCCcCCCCCcccc-cCCCCCCeEEccCCcCCCCCCc---cccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcc
Q 001036          769 LNNNNLSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPV---EFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNM  844 (1180)
Q Consensus       769 l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~  844 (1180)
                      +++|.+. .+|.++ ..+++|++|++++|++++.+|.   .+..+++                       |+.|++++|.
T Consensus       317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~-----------------------L~~L~Ls~N~  372 (549)
T 2z81_A          317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS-----------------------LQTLVLSQNH  372 (549)
T ss_dssp             EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT-----------------------CCEEECTTSC
T ss_pred             eccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcccc-----------------------CcEEEccCCc
Confidence            5555443 334333 2344444555544444443321   2334444                       5555555555


Q ss_pred             cccccC-cccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCC
Q 001036          845 LHGQLK-EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP  923 (1180)
Q Consensus       845 ~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  923 (1180)
                      +++..+ ...+..+++|++|++++|+++ .+|..++.+++|++|++++|++++ +|..+  .++|++||+++|++++.++
T Consensus       373 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~~  448 (549)
T 2z81_A          373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFSL  448 (549)
T ss_dssp             CCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCCC
T ss_pred             ccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhcc
Confidence            443211 125788999999999999999 678889999999999999999984 44443  2689999999999987531


Q ss_pred             CCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccc
Q 001036          924 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 1003 (1180)
Q Consensus       924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~ 1003 (1180)
                          .                                                     ++.|+.|||++|+|+ .+|. .
T Consensus       449 ----~-----------------------------------------------------l~~L~~L~Ls~N~l~-~ip~-~  469 (549)
T 2z81_A          449 ----F-----------------------------------------------------LPRLQELYISRNKLK-TLPD-A  469 (549)
T ss_dssp             ----C-----------------------------------------------------CTTCCEEECCSSCCS-SCCC-G
T ss_pred             ----c-----------------------------------------------------CChhcEEECCCCccC-cCCC-c
Confidence                1                                                     337999999999999 6776 5


Q ss_pred             cCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCC
Q 001036         1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 1048 (1180)
Q Consensus      1004 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip 1048 (1180)
                      +.+++|++|||++|++++.+|..|+.+++|+.|++++|+++|..|
T Consensus       470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            789999999999999999999999999999999999999999887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.6e-43  Score=439.85  Aligned_cols=393  Identities=17%  Similarity=0.227  Sum_probs=309.8

Q ss_pred             CcccccCChhhhhcCCcccEEEccCCcccCC-CCCCCCCCCCccEEEccCCcccccCChhhh-hcCCCCcEEEccCCcCC
Q 001036          601 IKMIGEFPNWLLENNTKLEFLYLVNDSLAGP-FRLPIHSHKRLRFLDVSNNNFQGHIPVEIG-DILPSLVYFNISMNALD  678 (1180)
Q Consensus       601 ~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~-~~l~~L~~L~ls~n~l~  678 (1180)
                      |.+.+ +|.. +.++++|+.|++++|.+++. ++..+.        ..+.|.+.|.+|..++ ..+++|++|++++|.+.
T Consensus       435 N~L~~-IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~--------~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~  504 (876)
T 4ecn_A          435 NRITF-ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWE--------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNM  504 (876)
T ss_dssp             CEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCS--------CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred             Ccccc-hhHH-HhcCCCCCEEECcCCcCCCCccccccc--------ccccccccccCChhhhhccCCCCCEEECcCCCCC
Confidence            45555 5654 44566666666666666551 111110        0111333345887764 23788888888888888


Q ss_pred             ccCCccccCcccCcEEEccCcc-ccc-ccChhhh------hcCCCCCEEEccCCcccccccc--cccCCccCceeeccCC
Q 001036          679 GSIPSSFGNVIFLQFLDLSNNK-LTG-EIPDHLA------MCCVNLEFLSLSNNSLKGHIFS--RIFSLRNLRWLLLEGN  748 (1180)
Q Consensus       679 ~~~p~~~~~l~~L~~L~l~~n~-l~~-~ip~~~~------~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n  748 (1180)
                      +.+|..|+++++|+.|++++|+ ++| .+|..+.      ..+++|++|++++|.++ .+|.  .+.++++|++|++++|
T Consensus       505 ~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N  583 (876)
T 4ecn_A          505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN  583 (876)
T ss_dssp             CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS
T ss_pred             ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC
Confidence            8888888888888888888887 887 7777653      13358899999999888 7777  8888899999999999


Q ss_pred             cccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCC-CCeEEccCCcCCCCCCccccCCCC--CCEEEccCCccccc
Q 001036          749 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG-LQHIVMPKNHLEGPIPVEFCRLDS--LQILDISDNNISGS  825 (1180)
Q Consensus       749 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~  825 (1180)
                      .++ .+| .++.+++|+.|++++|+++ .+|.++..+++ |+.|++++|.++ .+|..+..++.  |+.|++++|++++.
T Consensus       584 ~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~  659 (876)
T 4ecn_A          584 KVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE  659 (876)
T ss_dssp             CCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred             Ccc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCc
Confidence            888 777 8888889999999999988 78888888888 999999999888 67877776654  89999999999887


Q ss_pred             CCCCc------CCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhc--------CCCCCEEecCC
Q 001036          826 LPSCF------YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG--------LSQLSHLNLAH  891 (1180)
Q Consensus       826 ~p~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~--------l~~L~~L~L~~  891 (1180)
                      +|...      ...+|+.|++++|.+. .+|...+..+++|+.|+|++|+++ .+|..+..        +++|+.|+|++
T Consensus       660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~  737 (876)
T 4ecn_A          660 GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF  737 (876)
T ss_dssp             SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred             cccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCC
Confidence            76433      3357899999999988 677756678999999999999999 55554432        23899999999


Q ss_pred             CccccCCCcccc--CCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhc
Q 001036          892 NNLEGEVPIQLC--RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT  969 (1180)
Q Consensus       892 N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  969 (1180)
                      |+++ .+|..+.  .+++|+.|+|++|++++ +|..+.+++                                       
T Consensus       738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~---------------------------------------  776 (876)
T 4ecn_A          738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS---------------------------------------  776 (876)
T ss_dssp             SCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT---------------------------------------
T ss_pred             CCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC---------------------------------------
Confidence            9999 7888887  99999999999999998 676665533                                       


Q ss_pred             cccchhcccchhccccceEEccC------CcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcC
Q 001036          970 TKNIAYAYQGRVLSLLAGLDLSC------NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043 (1180)
Q Consensus       970 ~~~~~~~~~~~~l~~L~~LdLs~------N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1043 (1180)
                                    .|+.|+|++      |++.+.+|..|+++++|+.|+|++|++ +.+|..+.  ++|+.|||++|++
T Consensus       777 --------------~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l  839 (876)
T 4ecn_A          777 --------------QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN  839 (876)
T ss_dssp             --------------TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred             --------------CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence                          788898876      889999999999999999999999999 79999877  6999999999999


Q ss_pred             cccCCccccCCCCCCEEEcCCCcCc
Q 001036         1044 SGKIPRQLVDLNTLAIFIVAYNNLS 1068 (1180)
Q Consensus      1044 ~g~ip~~l~~l~~L~~l~ls~N~l~ 1068 (1180)
                      ....+..+.....+..+.+++|++.
T Consensus       840 ~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          840 ISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             CEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CccChHHccccccchheeecCCCcc
Confidence            9888788877777777888888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.6e-43  Score=425.04  Aligned_cols=161  Identities=25%  Similarity=0.324  Sum_probs=126.0

Q ss_pred             cCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCcccc--CCCccccCCCCCCEEECcCCcCcccCCC-CccCccc
Q 001036          855 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG--EVPIQLCRLNQLQLLDLSDNNLHGLIPS-CFDNTTL  931 (1180)
Q Consensus       855 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~  931 (1180)
                      ..+++|++|++++|++++.+|.+++.+++|++|++++|++++  .+|..+..+++|++||+++|++++.+|. .+..   
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~---  397 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW---  397 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC---
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc---
Confidence            466778888888888887777778888888888888888876  4566778888888888888888774443 2333   


Q ss_pred             ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCE
Q 001036          932 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 1011 (1180)
Q Consensus       932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~ 1011 (1180)
                                                                        ++.|+.|++++|++++.+|..+.  ++|++
T Consensus       398 --------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~  425 (520)
T 2z7x_B          398 --------------------------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKV  425 (520)
T ss_dssp             --------------------------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCE
T ss_pred             --------------------------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCE
Confidence                                                              23678888888888877777665  68888


Q ss_pred             EeCccccccccccccccCCCCCCEEECcCCcCcccCCcc-ccCCCCCCEEEcCCCcCcccCC
Q 001036         1012 LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus      1012 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
                      |+|++|+++ .+|..+..+++|+.|||++|+++ .+|.. +..+++|+.|++++|++++.++
T Consensus       426 L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            899999888 78887778889999999999988 46655 8888889999999998888766

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-42  Score=420.51  Aligned_cols=438  Identities=20%  Similarity=0.208  Sum_probs=362.4

Q ss_pred             CcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEE
Q 001036          591 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF  670 (1180)
Q Consensus       591 ~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L  670 (1180)
                      +++++|++++|.+.+..|.. +.++++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..   .+++|++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L   95 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL   95 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred             ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence            57788888888877655444 678999999999999999888888999999999999999998 68776   48999999


Q ss_pred             EccCCcCCc-cCCccccCcccCcEEEccCcccccccChhhhhcCCCC--CEEEccCCcc--cccccccccCCc-cCceee
Q 001036          671 NISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNL--EFLSLSNNSL--KGHIFSRIFSLR-NLRWLL  744 (1180)
Q Consensus       671 ~ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L--~~L~L~~n~l--~~~~~~~~~~l~-~L~~L~  744 (1180)
                      ++++|.+++ .+|..|+++++|++|++++|++++    ..+..+++|  ++|++++|.+  .+..|..+..+. ....++
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~  171 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV  171 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence            999999987 478899999999999999999874    223467788  9999999999  778888877765 345678


Q ss_pred             ccCCcccccCCC-cCCCCCCCcEEECcCCc-------CCCCCcccccCCCCCCeEEccCCcCCCCCCcccc---CCCCCC
Q 001036          745 LEGNHFVGEIPQ-SLSKCSSLKGLYLNNNN-------LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC---RLDSLQ  813 (1180)
Q Consensus       745 L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~-------l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~  813 (1180)
                      +++|.+.+.++. .+.++++|+.|++++|.       +.+.+| .++.+++|+.|++++|.+++..+..+.   ..++|+
T Consensus       172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence            888888876654 67789999999999987       666555 788899999999999887754332221   246899


Q ss_pred             EEEccCCcccccCCCCc------CCCcccEEEcCCcccccccCcccccCC---CCCcEEECcCccCccccchhhhcCCCC
Q 001036          814 ILDISDNNISGSLPSCF------YPLSIKQVHLSKNMLHGQLKEGTFFNC---SSLVTLDLSYNYLNGSIPDWIDGLSQL  884 (1180)
Q Consensus       814 ~L~l~~n~l~~~~p~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~p~~~~~l~~L  884 (1180)
                      +|++++|+++|.+|..+      ....|+.+++++|.+  .+|...+..+   .+|+.|++++|.+.+..  .+..+++|
T Consensus       251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L  326 (520)
T 2z7x_B          251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPF  326 (520)
T ss_dssp             EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred             EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcc
Confidence            99999999998888875      245788899999888  5664344444   67999999999987532  12688999


Q ss_pred             CEEecCCCccccCCCccccCCCCCCEEECcCCcCcc--cCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhh
Q 001036          885 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG--LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI  962 (1180)
Q Consensus       885 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  962 (1180)
                      ++|++++|++++.+|..++.+++|++|++++|++++  .+|..+++                                  
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~----------------------------------  372 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ----------------------------------  372 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT----------------------------------
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh----------------------------------
Confidence            999999999999999999999999999999999986  33444443                                  


Q ss_pred             hhhhhhccccchhcccchhccccceEEccCCcccCCCCcc-ccCCCCCCEEeCccccccccccccccCCCCCCEEECcCC
Q 001036          963 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ-IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041 (1180)
Q Consensus       963 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N 1041 (1180)
                                         ++.|+.||+++|++++.+|.. +..+++|++|++++|++++.+|..+.  ++|+.|||++|
T Consensus       373 -------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N  431 (520)
T 2z7x_B          373 -------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN  431 (520)
T ss_dssp             -------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS
T ss_pred             -------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC
Confidence                               348999999999999867765 89999999999999999999998876  79999999999


Q ss_pred             cCcccCCccccCCCCCCEEEcCCCcCcccCCCc-ccccccCCccccCCCCCCCCCCCCC
Q 001036         1042 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW-TAQFATFNKSSYDGNPFLCGLPLPI 1099 (1180)
Q Consensus      1042 ~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~~~N~~lc~~~l~~ 1099 (1180)
                      +++ .+|..+..+++|++|++++|++++ +|.. +..+..+...++.+||+.|.|++.|
T Consensus       432 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~  488 (520)
T 2z7x_B          432 KIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRID  488 (520)
T ss_dssp             CCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred             ccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCchH
Confidence            999 899999999999999999999994 6653 6778888889999999999987544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.4e-40  Score=414.52  Aligned_cols=516  Identities=21%  Similarity=0.211  Sum_probs=355.1

Q ss_pred             CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036          466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF  545 (1180)
Q Consensus       466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l  545 (1180)
                      +++++|+|++|.+++..+..|.++++|++|++++|+++ .+++..|.++++|++|+|++|+++ .++...|.++++|++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence            46888888888888777778888888888888888887 565777888888888888888876 4555667777777777


Q ss_pred             ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036          546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN  625 (1180)
Q Consensus       546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~  625 (1180)
                      ++++|.+..++.                                                    ..++++++|+.|++++
T Consensus       130 ~Ls~N~l~~l~~----------------------------------------------------~~~~~L~~L~~L~Ls~  157 (635)
T 4g8a_A          130 VAVETNLASLEN----------------------------------------------------FPIGHLKTLKELNVAH  157 (635)
T ss_dssp             ECTTSCCCCSTT----------------------------------------------------CCCTTCTTCCEEECCS
T ss_pred             ECCCCcCCCCCh----------------------------------------------------hhhhcCcccCeecccc
Confidence            777776554321                                                    1123444555555555


Q ss_pred             CcccCC-CCCCCCCCCCccEEEccCCcccccCChhhhhcCC----CCcEEEccCCcCCccCCccccCcccCcEEEccCcc
Q 001036          626 DSLAGP-FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP----SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK  700 (1180)
Q Consensus       626 n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~----~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~  700 (1180)
                      |.+++. .+..+..+++|++|++++|++++..|..+.. +.    ....++++.|.++...+..+. ...++.+++.+|.
T Consensus       158 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~  235 (635)
T 4g8a_A          158 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNF  235 (635)
T ss_dssp             SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCC
T ss_pred             CccccCCCchhhccchhhhhhcccCccccccccccccc-hhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhccc
Confidence            554432 2334445566666666666666444433321 22    234677777777755554443 3345667777776


Q ss_pred             cccccChhhhhcCCCCCEEEccCCc------ccccccccccCCccCceeeccCCcccc---cCCCcCCCCCCCcEEECcC
Q 001036          701 LTGEIPDHLAMCCVNLEFLSLSNNS------LKGHIFSRIFSLRNLRWLLLEGNHFVG---EIPQSLSKCSSLKGLYLNN  771 (1180)
Q Consensus       701 l~~~ip~~~~~~~~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~l~~  771 (1180)
                      ....++...+..+..++...+..+.      +.......+..+..+....+..+....   ..+..+..+.+++.+++.+
T Consensus       236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  315 (635)
T 4g8a_A          236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS  315 (635)
T ss_dssp             SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred             ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence            6555555555666776666554332      222333444555555555555443221   2334455566777777777


Q ss_pred             CcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccc--cc
Q 001036          772 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG--QL  849 (1180)
Q Consensus       772 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~--~~  849 (1180)
                      +.+...  ..+....+|+.|++.+|.+.+..+.   .+..|+.+++.+|..... +.....++++.+++++|.+..  ..
T Consensus       316 ~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~  389 (635)
T 4g8a_A          316 VTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCC  389 (635)
T ss_dssp             CEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB-CCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred             cccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC-cccccccccccchhhcccccccccc
Confidence            776532  2345567778888888777654432   356677777777776533 333445677888888877643  23


Q ss_pred             CcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCC-ccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036          850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDN  928 (1180)
Q Consensus       850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  928 (1180)
                      +. .+..+.+|+.++++.|.+.. .+..+..+++|+.+++++|+.....+ ..+..+++++.+++++|.+++..|..+..
T Consensus       390 ~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~  467 (635)
T 4g8a_A          390 SQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  467 (635)
T ss_dssp             CH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred             cc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc
Confidence            33 56677888888888888764 45567788888888888887765544 45778888888888888888877776654


Q ss_pred             cccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcc-cCCCCccccCCC
Q 001036          929 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL-VGHIPPQIGNLT 1007 (1180)
Q Consensus       929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l-~g~~p~~~~~l~ 1007 (1180)
                      ++                                                     .++.|+|++|++ .+.+|..|..++
T Consensus       468 ~~-----------------------------------------------------~L~~L~Ls~N~~~~~~~~~~~~~l~  494 (635)
T 4g8a_A          468 LS-----------------------------------------------------SLEVLKMAGNSFQENFLPDIFTELR  494 (635)
T ss_dssp             CT-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             ch-----------------------------------------------------hhhhhhhhhcccccccCchhhhhcc
Confidence            33                                                     688889988874 445778888889


Q ss_pred             CCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCccccc-ccCCcccc
Q 001036         1008 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF-ATFNKSSY 1086 (1180)
Q Consensus      1008 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~-~~~~~~~~ 1086 (1180)
                      +|++|||++|+|++.+|..|+++++|+.|+|++|+|++..|..|..+++|++||+++|+|++.+|+.+..+ .++...++
T Consensus       495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L  574 (635)
T 4g8a_A          495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  574 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred             ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence            99999999999998888889999999999999999988888888888999999999999998888766666 56777888


Q ss_pred             CCCCCCCCCCCC
Q 001036         1087 DGNPFLCGLPLP 1098 (1180)
Q Consensus      1087 ~~N~~lc~~~l~ 1098 (1180)
                      .+|||.|+|.+.
T Consensus       575 ~~Np~~C~C~~~  586 (635)
T 4g8a_A          575 TQNDFACTCEHQ  586 (635)
T ss_dssp             TTCCBCCSGGGH
T ss_pred             eCCCCcccCCcH
Confidence            899999988754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.2e-38  Score=397.10  Aligned_cols=514  Identities=21%  Similarity=0.198  Sum_probs=357.6

Q ss_pred             cceeeeccCcccCCCCccccccccCCCCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCC
Q 001036          439 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE  518 (1180)
Q Consensus       439 ~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~  518 (1180)
                      .++.|+++++.+.    .+.+..|..+++|++|+|++|.+++..|.+|.++++|++|++++|+++ .+++..|.++++|+
T Consensus        53 ~~~~LdLs~N~i~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           53 STKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQ  127 (635)
T ss_dssp             TCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCC
T ss_pred             CCCEEEeeCCCCC----CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCC
Confidence            4666666666553    233457888999999999999999888889999999999999999997 56677899999999


Q ss_pred             EEEccCCccccccCcccccCCCCCcEEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEc
Q 001036          519 ELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL  598 (1180)
Q Consensus       519 ~L~L~~n~l~~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l  598 (1180)
                      +|++++|+++ .++...|.++++|++|++++|.+...                          ..|.++..++.|+.|++
T Consensus       128 ~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~--------------------------~~~~~~~~l~~L~~L~L  180 (635)
T 4g8a_A          128 KLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF--------------------------KLPEYFSNLTNLEHLDL  180 (635)
T ss_dssp             EEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCC--------------------------CCCGGGGGCTTCCEEEC
T ss_pred             EEECCCCcCC-CCChhhhhcCcccCeeccccCccccC--------------------------CCchhhccchhhhhhcc
Confidence            9999999998 45556788999999999888876532                          34566777888889999


Q ss_pred             CCCcccccCChhhhhcCCc----ccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccC
Q 001036          599 SHIKMIGEFPNWLLENNTK----LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM  674 (1180)
Q Consensus       599 ~~~~~~~~~p~~~~~~~~~----L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~  674 (1180)
                      ++|++.+..|..+ ..+++    ...++++.|.+....+..+ ....++.+++.+|.....++...+..++.++...+..
T Consensus       181 ~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  258 (635)
T 4g8a_A          181 SSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  258 (635)
T ss_dssp             CSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred             cCccccccccccc-cchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence            9888887666542 33332    3467788888776554443 3445677888888766555555555577777666543


Q ss_pred             Cc------CCccCCccccCcccCcEEEccCccccc---ccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeec
Q 001036          675 NA------LDGSIPSSFGNVIFLQFLDLSNNKLTG---EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL  745 (1180)
Q Consensus       675 n~------l~~~~p~~~~~l~~L~~L~l~~n~l~~---~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  745 (1180)
                      +.      +....+..+..+..+...++..+....   .++. .+....+++.+++.++.+....  .+.....|+.|++
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l  335 (635)
T 4g8a_A          259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIID-LFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLEL  335 (635)
T ss_dssp             ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTT-TTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEE
T ss_pred             cccccccccccccccccccccchhhhhhhhhhhcccccchhh-hhhhhccccccccccccccccc--ccccchhhhhhhc
Confidence            32      223334455555666666555443321   1111 1234556666666666654332  2344455666666


Q ss_pred             cCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCC--CCCCccccCCCCCCEEEccCCccc
Q 001036          746 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEFCRLDSLQILDISDNNIS  823 (1180)
Q Consensus       746 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~  823 (1180)
                      .+|.+.+..+.   .++.|+.+++.+|.....  .....+++|+.++++.|.+.  +..+..+..+.+|+.++++.|...
T Consensus       336 ~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~  410 (635)
T 4g8a_A          336 VNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI  410 (635)
T ss_dssp             ESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE
T ss_pred             ccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc
Confidence            66665543332   244555666666555422  22334555566666555543  223334444555555555555443


Q ss_pred             ccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccc-hhhhcCCCCCEEecCCCccccCCCccc
Q 001036          824 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQL  902 (1180)
Q Consensus       824 ~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~  902 (1180)
                                             + ++. .+..+++|+.++++.|......+ ..|..+++++.++++.|.+.+..|..+
T Consensus       411 -----------------------~-~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~  465 (635)
T 4g8a_A          411 -----------------------T-MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  465 (635)
T ss_dssp             -----------------------E-ECS-CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             -----------------------c-ccc-cccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence                                   2 222 56677788888888777655443 457778888888888888888888888


Q ss_pred             cCCCCCCEEECcCCcCc-ccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchh
Q 001036          903 CRLNQLQLLDLSDNNLH-GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV  981 (1180)
Q Consensus       903 ~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  981 (1180)
                      ..+++|++|+|++|++. +.+|..|..++                                                   
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~---------------------------------------------------  494 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELR---------------------------------------------------  494 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCT---------------------------------------------------
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhcc---------------------------------------------------
Confidence            88888888888888744 44566665433                                                   


Q ss_pred             ccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCC-CCCCEE
Q 001036          982 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIF 1060 (1180)
Q Consensus       982 l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~l 1060 (1180)
                        +|+.|||++|+|++.+|..|+++++|++|+|++|+|++..|..|+++++|++|||++|+|++.+|..+..+ ++|++|
T Consensus       495 --~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L  572 (635)
T 4g8a_A          495 --NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL  572 (635)
T ss_dssp             --TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred             --ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence              78889999999998888999999999999999999999999999999999999999999999999999888 689999


Q ss_pred             EcCCCcCcccCC
Q 001036         1061 IVAYNNLSGKIP 1072 (1180)
Q Consensus      1061 ~ls~N~l~g~ip 1072 (1180)
                      ++++|++++...
T Consensus       573 ~L~~Np~~C~C~  584 (635)
T 4g8a_A          573 NLTQNDFACTCE  584 (635)
T ss_dssp             ECTTCCBCCSGG
T ss_pred             EeeCCCCcccCC
Confidence            999999988664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.6e-39  Score=386.28  Aligned_cols=372  Identities=21%  Similarity=0.240  Sum_probs=306.5

Q ss_pred             cEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEcc
Q 001036          643 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS  722 (1180)
Q Consensus       643 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~  722 (1180)
                      +.++.+++.++ .+|. +   .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            35667777776 6776 2   47899999999999988888999999999999999988878877777788999999999


Q ss_pred             CCcccccccccccCCccCceeeccCCcccccCCCc--CCCCCCCcEEECcCCcCCCCCccc-ccCCCCCCeEEccCCcCC
Q 001036          723 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS--LSKCSSLKGLYLNNNNLSGKIPRW-LGNLKGLQHIVMPKNHLE  799 (1180)
Q Consensus       723 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~  799 (1180)
                      +|.+++..|..|.++++|++|++++|.+++..|..  +..+++|++|++++|++++..|.. +.++++|++|++++|+++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            99999888889999999999999999998755544  888999999999999998877776 788999999999999999


Q ss_pred             CCCCccccCC--CCCCEEEccCCcccccCCCCc---------CCCcccEEEcCCcccccccCcccccC---CCCCcEEEC
Q 001036          800 GPIPVEFCRL--DSLQILDISDNNISGSLPSCF---------YPLSIKQVHLSKNMLHGQLKEGTFFN---CSSLVTLDL  865 (1180)
Q Consensus       800 ~~~~~~~~~l--~~L~~L~l~~n~l~~~~p~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~L  865 (1180)
                      +..|..+..+  .+|+.|++++|.+.+..+..+         ...+|+.|++++|.+.+.+|. .+..   .++|+.|++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEEC
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccceeeEee
Confidence            8888888766  688999999999886544432         235788888888888877766 4433   378888888


Q ss_pred             cCccCccc----------cchhhhcC--CCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036          866 SYNYLNGS----------IPDWIDGL--SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE  933 (1180)
Q Consensus       866 ~~n~l~~~----------~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  933 (1180)
                      ++|.+.+.          .+..+.++  ++|++|++++|.+.+.+|..+..+++|++|+|++|++++..|..|++++   
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---  323 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT---  323 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc---
Confidence            88755432          22333333  6799999999999988888899999999999999999888887776543   


Q ss_pred             ccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEe
Q 001036          934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 1013 (1180)
Q Consensus       934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ 1013 (1180)
                                                                        .|+.|+|++|++++..|..|+++++|++|+
T Consensus       324 --------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          324 --------------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             --------------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             --------------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence                                                              788899999999888888889999999999


Q ss_pred             CccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036         1014 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus      1014 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      |++|++++..|..|+++++|+.|+|++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999988888999999999999999999977777788899999999999999998885

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.9e-40  Score=400.66  Aligned_cols=458  Identities=20%  Similarity=0.199  Sum_probs=265.4

Q ss_pred             CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036          466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF  545 (1180)
Q Consensus       466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l  545 (1180)
                      ...+++++++|.+++ +|..+.  ++|++|++++|.++ .+++..+.++++|++|++++|.+++ ++...|.++++|++|
T Consensus        31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYL  105 (562)
T ss_dssp             --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEE
Confidence            344677777777764 554433  67777777777776 3445667777777777777777763 333446666666666


Q ss_pred             ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccc-cCChhhhhcCCcccEEEcc
Q 001036          546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIG-EFPNWLLENNTKLEFLYLV  624 (1180)
Q Consensus       546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~-~~p~~~~~~~~~L~~L~l~  624 (1180)
                      ++++|.+..++.                            .  .+++|++|++++|.+.+ .+|.. +.++++|+.|+++
T Consensus       106 ~Ls~N~l~~lp~----------------------------~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~  154 (562)
T 3a79_B          106 DVSHNRLQNISC----------------------------C--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLS  154 (562)
T ss_dssp             ECTTSCCCEECS----------------------------C--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEE
T ss_pred             ECCCCcCCccCc----------------------------c--ccccCCEEECCCCCccccCchHh-hcccCcccEEecC
Confidence            666666543211                            1  22344444444444443 22222 3455555555555


Q ss_pred             CCcccCCCCCCCCCCCCc--cEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcc--cCcEEEccCcc
Q 001036          625 NDSLAGPFRLPIHSHKRL--RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVI--FLQFLDLSNNK  700 (1180)
Q Consensus       625 ~n~~~~~~~~~~~~~~~L--~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~--~L~~L~l~~n~  700 (1180)
                      +|.+++.   .+..+++|  +.|++++|.+..                       ++..|..+..+.  .+ .+++++|.
T Consensus       155 ~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~-----------------------~~~~~~~l~~l~~~~l-~l~l~~n~  207 (562)
T 3a79_B          155 AAKFRQL---DLLPVAHLHLSCILLDLVSYHI-----------------------KGGETESLQIPNTTVL-HLVFHPNS  207 (562)
T ss_dssp             CSBCCTT---TTGGGTTSCEEEEEEEESSCCC-----------------------CSSSCCEEEECCEEEE-EEEECSSS
T ss_pred             CCccccC---chhhhhhceeeEEEeecccccc-----------------------cccCcccccccCcceE-EEEecCcc
Confidence            5555432   12222222  444444444400                       333444433322  11 23444444


Q ss_pred             cccccChhhhhcCCCCCEEEccCCc-----ccccccccccCCccCceeeccCCcccccC----CCcCCCCCCCcEEECcC
Q 001036          701 LTGEIPDHLAMCCVNLEFLSLSNNS-----LKGHIFSRIFSLRNLRWLLLEGNHFVGEI----PQSLSKCSSLKGLYLNN  771 (1180)
Q Consensus       701 l~~~ip~~~~~~~~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~l~~  771 (1180)
                      +.+.+++..+..+++|+.+++++|+     +.+ ....+..+++|+.|++.++.+.+..    +..+ ..++|++|++++
T Consensus       208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~  285 (562)
T 3a79_B          208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYN  285 (562)
T ss_dssp             CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEE
T ss_pred             chhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEec
Confidence            4433433333334444444444442     111 1122334444444444444333210    0011 122455555555


Q ss_pred             CcCCCCCcccc-----cCCCCCCeEEccCCcCCCCCC-ccccC---CCCCCEEEccCCcccccCCCCcCCCcccEEEcCC
Q 001036          772 NNLSGKIPRWL-----GNLKGLQHIVMPKNHLEGPIP-VEFCR---LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK  842 (1180)
Q Consensus       772 n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~~---l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~  842 (1180)
                      |.++|.+|..+     .+++.|+.+++..|.+  .+| ..+..   ..+|+.|++++|.+..                  
T Consensus       286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~------------------  345 (562)
T 3a79_B          286 LTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH------------------  345 (562)
T ss_dssp             EEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC------------------
T ss_pred             cEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc------------------
Confidence            55554455444     3344444444444443  222 11111   1345555555555431                  


Q ss_pred             cccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccC--CCccccCCCCCCEEECcCCcCcc
Q 001036          843 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE--VPIQLCRLNQLQLLDLSDNNLHG  920 (1180)
Q Consensus       843 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~  920 (1180)
                            ++  ....+++|+.|++++|.+++.+|..++++++|++|++++|++++.  +|..+..+++|++|++++|++++
T Consensus       346 ------~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~  417 (562)
T 3a79_B          346 ------MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS  417 (562)
T ss_dssp             ------CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred             ------cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence                  10  125677888888888888888888888888888888888888863  35668888888888888888887


Q ss_pred             cCCC-CccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCC
Q 001036          921 LIPS-CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI  999 (1180)
Q Consensus       921 ~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~  999 (1180)
                      .+|. .+..                                                     ++.|+.|++++|++++.+
T Consensus       418 ~~~~~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~  444 (562)
T 3a79_B          418 HAYDRTCAW-----------------------------------------------------AESILVLNLSSNMLTGSV  444 (562)
T ss_dssp             CCSSCCCCC-----------------------------------------------------CTTCCEEECCSSCCCGGG
T ss_pred             ccChhhhcC-----------------------------------------------------cccCCEEECCCCCCCcch
Confidence            5554 3433                                                     236888899999988877


Q ss_pred             CccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCcc-ccCCCCCCEEEcCCCcCcccCCC
Q 001036         1000 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus      1000 p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      |..+.  ++|++|+|++|+++ .+|..+.++++|+.|||++|+|+ .+|.. +..++.|+.|++++|+++|.+|.
T Consensus       445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            77665  68999999999998 67777778999999999999999 56665 88899999999999999987763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6e-39  Score=391.04  Aligned_cols=434  Identities=23%  Similarity=0.255  Sum_probs=273.9

Q ss_pred             ccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEc
Q 001036          593 LKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNI  672 (1180)
Q Consensus       593 L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l  672 (1180)
                      .+.++++++++.+ +|..+   .++++.|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|++|++
T Consensus        33 ~~~l~ls~~~L~~-ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L  107 (562)
T 3a79_B           33 ESMVDYSNRNLTH-VPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDV  107 (562)
T ss_dssp             CCEEECTTSCCCS-CCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEEC
T ss_pred             CcEEEcCCCCCcc-CCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC-CCCCCCEEEC
Confidence            3566666666554 55542   25666666666666665555666666666666666666643343333 3566666666


Q ss_pred             cCCcCCccCCccccCcccCcEEEccCccccc-ccChhhhhcCCCCCEEEccCCcccccccccccCCccC--ceeeccCCc
Q 001036          673 SMNALDGSIPSSFGNVIFLQFLDLSNNKLTG-EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNL--RWLLLEGNH  749 (1180)
Q Consensus       673 s~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~  749 (1180)
                      ++|.++. +|..  .+++|++|++++|++++ .+|..+ .++++|++|++++|++++.   .+..+++|  ++|++++|.
T Consensus       108 s~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          108 SHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             TTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred             CCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhh-cccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence            6666663 3433  56666666666666652 122333 4566666666666666542   23333344  666666666


Q ss_pred             c--cccCCCcCCCCC-CCcEEECcCCcCCCCCcc-cccCCCCCCeEEccCCcC-----CCCCCccccCCCCCCEEEccCC
Q 001036          750 F--VGEIPQSLSKCS-SLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHL-----EGPIPVEFCRLDSLQILDISDN  820 (1180)
Q Consensus       750 l--~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n  820 (1180)
                      +  ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|+.     .+ ....+..+++|+.++++++
T Consensus       181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~  259 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHI  259 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEE
T ss_pred             ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCC
Confidence            6  555555555443 111345566665554443 334566666777766631     11 1122344445555544444


Q ss_pred             ccccc----CCCCcCCCcccEEEcCCcccccccCcccc----cCCC--------------------------CCcEEECc
Q 001036          821 NISGS----LPSCFYPLSIKQVHLSKNMLHGQLKEGTF----FNCS--------------------------SLVTLDLS  866 (1180)
Q Consensus       821 ~l~~~----~p~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~--------------------------~L~~L~L~  866 (1180)
                      .+.+.    ++......++++|++++|.+.|.+|...|    .+++                          +|+.|+++
T Consensus       260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~  339 (562)
T 3a79_B          260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS  339 (562)
T ss_dssp             EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred             cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence            44321    11122233666777777777666666322    3333                          35555555


Q ss_pred             CccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccC--CCCccCcccccccCCCCCCCCC
Q 001036          867 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI--PSCFDNTTLHESYNNNSSPDKP  944 (1180)
Q Consensus       867 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~~~~~~~~~~~~~  944 (1180)
                      +|.+....  ..+.+++|++|++++|++++.+|..+..+++|++|++++|++++..  |..|++                
T Consensus       340 ~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~----------------  401 (562)
T 3a79_B          340 DTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN----------------  401 (562)
T ss_dssp             SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT----------------
T ss_pred             CCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC----------------
Confidence            55543221  1145666777777777777666777777777777777777766532  233332                


Q ss_pred             CccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCc-cccCCCCCCEEeCccccccccc
Q 001036          945 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP-QIGNLTRIQTLNLSHNNLTGTI 1023 (1180)
Q Consensus       945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~ 1023 (1180)
                                                           ++.|+.||+++|++++.+|. .+..+++|++|+|++|++++.+
T Consensus       402 -------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  444 (562)
T 3a79_B          402 -------------------------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV  444 (562)
T ss_dssp             -------------------------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred             -------------------------------------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence                                                 44899999999999986665 4899999999999999999999


Q ss_pred             cccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCc-ccccccCCccccCCCCCCCCCCCC
Q 001036         1024 PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW-TAQFATFNKSSYDGNPFLCGLPLP 1098 (1180)
Q Consensus      1024 p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~~~N~~lc~~~l~ 1098 (1180)
                      |..+.  ++|+.|||++|+|+ .+|..+..++.|++|++++|++++ +|.. +..+..+...++.+||+.|+|+..
T Consensus       445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred             hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence            88776  79999999999999 789888899999999999999994 6654 677888888999999999998754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.7e-38  Score=372.58  Aligned_cols=281  Identities=26%  Similarity=0.343  Sum_probs=159.3

Q ss_pred             CCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcE
Q 001036          465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI  544 (1180)
Q Consensus       465 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  544 (1180)
                      .++|++|++++|.+ +.+|..++++++|++|++++|.+.|.+ |..++.+++|+.+++.+|..            .+++.
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~l~l~~c~~------------~~l~~   75 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNA-PPGNGEQREMAVSRLRDCLD------------RQAHE   75 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTS-CTTSCCCHHHHHHHHHHHHH------------HTCSE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccC-Ccccccchhcchhhhhhhhc------------cCCCE
Confidence            46788888888888 788888888888888888888888777 56677777666665555431            23334


Q ss_pred             EecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEcc
Q 001036          545 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV  624 (1180)
Q Consensus       545 l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~  624 (1180)
                      +++++|.+.                                                   + +|.    ..++|+.|+++
T Consensus        76 L~l~~~~l~---------------------------------------------------~-lp~----~~~~L~~L~l~   99 (454)
T 1jl5_A           76 LELNNLGLS---------------------------------------------------S-LPE----LPPHLESLVAS   99 (454)
T ss_dssp             EECTTSCCS---------------------------------------------------C-CCS----CCTTCSEEECC
T ss_pred             EEecCCccc---------------------------------------------------c-CCC----CcCCCCEEEcc
Confidence            444433322                                                   2 222    12456666666


Q ss_pred             CCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccc
Q 001036          625 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE  704 (1180)
Q Consensus       625 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  704 (1180)
                      +|.+++ +|.   .+++|++|++++|.++ .+|..    .++|++|++++|.+++ +| .|+++++|++|++++|+++ .
T Consensus       100 ~n~l~~-lp~---~~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~  167 (454)
T 1jl5_A          100 CNSLTE-LPE---LPQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-K  167 (454)
T ss_dssp             SSCCSS-CCC---CCTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-C
T ss_pred             CCcCCc-ccc---ccCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-c
Confidence            666665 232   2367778888888777 34421    2578888888888876 56 5788888888888888877 4


Q ss_pred             cChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccC
Q 001036          705 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN  784 (1180)
Q Consensus       705 ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  784 (1180)
                      +|..    ..+|++|++++|++++ +| .++++++|++|++++|.+++ +|..   .++|++|++++|.+. .+|. ++.
T Consensus       168 lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~  235 (454)
T 1jl5_A          168 LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQN  235 (454)
T ss_dssp             CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTT
T ss_pred             cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCC
Confidence            6643    3477777777777776 34 46777777777777777765 3332   246777777777776 5553 666


Q ss_pred             CCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccc
Q 001036          785 LKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH  846 (1180)
Q Consensus       785 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~  846 (1180)
                      +++|++|++++|++++ +|..   .++|+.|++++|++++ +|..  +.+++.|++++|.++
T Consensus       236 l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          236 LPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFS  290 (454)
T ss_dssp             CTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccC
Confidence            7777777777777664 3322   3566666666666654 3331  134444444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1e-37  Score=370.69  Aligned_cols=373  Identities=23%  Similarity=0.270  Sum_probs=324.0

Q ss_pred             CcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccc-cccccCCccCceeec
Q 001036          667 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI-FSRIFSLRNLRWLLL  745 (1180)
Q Consensus       667 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L  745 (1180)
                      -+.++.+++.++ .+|. +  .++|++|++++|.+++..|..+ ..+++|++|++++|.+.+.+ +..|.++++|++|++
T Consensus        12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            346778888887 4555 3  3789999999999985545554 68999999999999998555 677999999999999


Q ss_pred             cCCcccccCCCcCCCCCCCcEEECcCCcCCCCCccc--ccCCCCCCeEEccCCcCCCCCCcc-ccCCCCCCEEEccCCcc
Q 001036          746 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW--LGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNI  822 (1180)
Q Consensus       746 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l  822 (1180)
                      ++|.+++..|..|+++++|++|++++|++++.+|..  ++.+++|++|++++|++++..|.. +.++++|++|++++|++
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            999999999999999999999999999999866665  899999999999999999888876 88999999999999999


Q ss_pred             cccCCCCcCC---CcccEEEcCCcccccccCc-------ccccCCCCCcEEECcCccCccccchhhhcC---CCCCEEec
Q 001036          823 SGSLPSCFYP---LSIKQVHLSKNMLHGQLKE-------GTFFNCSSLVTLDLSYNYLNGSIPDWIDGL---SQLSHLNL  889 (1180)
Q Consensus       823 ~~~~p~~~~~---~~L~~L~l~~n~~~~~~~~-------~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L  889 (1180)
                      .+..|..+..   ..++.+++++|.+.+..+.       ..+..+++|+.|++++|++++..|..+...   ++|+.|++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            9888877643   6899999999998753332       023466899999999999999999988765   89999999


Q ss_pred             CCCccccCC----------CccccC--CCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCc
Q 001036          890 AHNNLEGEV----------PIQLCR--LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS  957 (1180)
Q Consensus       890 ~~N~l~~~~----------p~~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  957 (1180)
                      ++|.+.+..          +..+..  .++|++|++++|++++.+|..|++++                           
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------  299 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT---------------------------  299 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT---------------------------
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC---------------------------
Confidence            999665432          222222  36899999999999999988887644                           


Q ss_pred             hhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEE
Q 001036          958 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037 (1180)
Q Consensus       958 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ 1037 (1180)
                                                .|+.|+|++|++++..|..|+++++|++|+|++|++++..|..|+++++|+.||
T Consensus       300 --------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          300 --------------------------DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             --------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             --------------------------CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence                                      799999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCCC
Q 001036         1038 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 1097 (1180)
Q Consensus      1038 Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l 1097 (1180)
                      |++|++++..|..+..+++|++|++++|++++..+..+..+..+...++.+||+.|.||.
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999999999999999999999999987776667888899999999999999983

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.4e-37  Score=362.77  Aligned_cols=378  Identities=26%  Similarity=0.315  Sum_probs=170.3

Q ss_pred             CcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCc-------------cEEEccCCcccccCC
Q 001036          591 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL-------------RFLDVSNNNFQGHIP  657 (1180)
Q Consensus       591 ~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L-------------~~L~l~~n~l~~~ip  657 (1180)
                      +.|+++++++|.+ |.+|.. ++++++|+.|++++|.+.|..|..++.+++|             ++|++++|.++ .+|
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp   87 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred             ccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence            3444445555444 445544 2355555555555555555555555444443             55555555555 233


Q ss_pred             hhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCC
Q 001036          658 VEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL  737 (1180)
Q Consensus       658 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  737 (1180)
                      .    ..++|++|++++|.+++ +|..   +++|++|++++|+++ .+|..    .++|++|++++|++++ +| .++++
T Consensus        88 ~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l  152 (454)
T 1jl5_A           88 E----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNS  152 (454)
T ss_dssp             S----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred             C----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence            3    13455555555555554 3332   245555555555555 23321    1455555555555554 33 35555


Q ss_pred             ccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEc
Q 001036          738 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI  817 (1180)
Q Consensus       738 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  817 (1180)
                      ++|++|++++|++++ +|..+   ++|++|++++|++++ +| .++++++|++|++++|++++ +|..   .++|++|++
T Consensus       153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred             CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence            555555555555553 33322   355555555555553 34 35555555555555555553 2221   135555555


Q ss_pred             cCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccC
Q 001036          818 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE  897 (1180)
Q Consensus       818 ~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  897 (1180)
                      ++|++. .+|......+|++|++++|.+.+ +|.    ..++|+.|++++|++++ +|..   .++|++|++++|++++.
T Consensus       223 ~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          223 GNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             CSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred             cCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence            555555 44433333455555555555543 332    12455555555555554 3332   24555555555555541


Q ss_pred             CCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcc
Q 001036          898 VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY  977 (1180)
Q Consensus       898 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  977 (1180)
                       |..   .++|++|++++|++++.. ..                                                    
T Consensus       293 -~~~---~~~L~~L~l~~N~l~~i~-~~----------------------------------------------------  315 (454)
T 1jl5_A          293 -SEL---PPNLYYLNASSNEIRSLC-DL----------------------------------------------------  315 (454)
T ss_dssp             -SCC---CTTCCEEECCSSCCSEEC-CC----------------------------------------------------
T ss_pred             -cCc---CCcCCEEECcCCcCCccc-CC----------------------------------------------------
Confidence             110   145555555555555311 00                                                    


Q ss_pred             cchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcc--cCCccccCC-
Q 001036          978 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG--KIPRQLVDL- 1054 (1180)
Q Consensus       978 ~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g--~ip~~l~~l- 1054 (1180)
                          .+.|+.|++++|++++ +|..   +++|++|++++|+++ .+|.   .+++|+.||+++|++++  .+|.++.++ 
T Consensus       316 ----~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~  383 (454)
T 1jl5_A          316 ----PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLR  383 (454)
T ss_dssp             ----CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred             ----cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhh
Confidence                1146666666666664 4543   356666666666666 3454   35666666666666666  566666655 


Q ss_pred             ------------CCCCEEEcCCCcCcc--cCCCcc
Q 001036         1055 ------------NTLAIFIVAYNNLSG--KIPEWT 1075 (1180)
Q Consensus      1055 ------------~~L~~l~ls~N~l~g--~ip~~~ 1075 (1180)
                                  ++|+.||+++|+++|  .+|.+.
T Consensus       384 ~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl  418 (454)
T 1jl5_A          384 MNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV  418 (454)
T ss_dssp             CCC--------------------------------
T ss_pred             hcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence                        789999999999998  788643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=354.60  Aligned_cols=321  Identities=22%  Similarity=0.225  Sum_probs=197.8

Q ss_pred             cEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEcc
Q 001036          643 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS  722 (1180)
Q Consensus       643 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~  722 (1180)
                      +.++.+++.++ .+|..+   .++++.|++++|.+++..|..|.++++|++|++++|.+++..|.. +.++++|++|+++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECC
Confidence            46777777777 677654   357888888888888777777888888888888888777433433 3467777777777


Q ss_pred             CCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCC
Q 001036          723 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI  802 (1180)
Q Consensus       723 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  802 (1180)
                      +|++++..+..|.++++|++|++++|.+.+..|..|.++++|+.|++++|.+.+..|..|..+++|++|++++|++++..
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            77777665566666777777777777776666666666777777777777666655666666666666666666666555


Q ss_pred             CccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCC
Q 001036          803 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS  882 (1180)
Q Consensus       803 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~  882 (1180)
                      +..+..+++|+.|++++|.+.+.                        +...|..+++|+.|++++|.+.+.+|.......
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  224 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAI------------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL  224 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEE------------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred             hhHhcccCCCcEEeCCCCcCcEe------------------------ChhhcccCcccceeeCCCCccccccCcccccCc
Confidence            55566666666666666655422                        112455566666666666665555555554445


Q ss_pred             CCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhh
Q 001036          883 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI  962 (1180)
Q Consensus       883 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  962 (1180)
                      +|+.|++++|++++..+..+..+++|++|+|++|++++..+..|.+++                                
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--------------------------------  272 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL--------------------------------  272 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT--------------------------------
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc--------------------------------
Confidence            666666666666543334555556666666666555554444443322                                


Q ss_pred             hhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCc
Q 001036          963 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 1042 (1180)
Q Consensus       963 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~ 1042 (1180)
                                           .|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|+
T Consensus       273 ---------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          273 ---------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             ---------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             ---------------------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence                                 45555555555555555555555555555555555554444445555555555555555


Q ss_pred             Ccc
Q 001036         1043 LSG 1045 (1180)
Q Consensus      1043 l~g 1045 (1180)
                      +++
T Consensus       332 l~c  334 (477)
T 2id5_A          332 LAC  334 (477)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.1e-35  Score=350.07  Aligned_cols=348  Identities=19%  Similarity=0.175  Sum_probs=251.6

Q ss_pred             cEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccC
Q 001036          668 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEG  747 (1180)
Q Consensus       668 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  747 (1180)
                      +.++.+++.++ .+|..+.  +.++.|++++|+++ .++...+..+++|++|++++|.+++..|..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            45555555555 3444332  35666666666665 33333334566666666666666655566666666666666666


Q ss_pred             CcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCC
Q 001036          748 NHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP  827 (1180)
Q Consensus       748 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  827 (1180)
                      |.+++..+..|.++++|++|++++|++.+..|..+..+++|++|++++|.+.+..+..|.++++|+.|++++|+++    
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----  165 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----  165 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS----
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc----
Confidence            6665544445556666666666666665555555566666666666666665555555555666666666655554    


Q ss_pred             CCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCC
Q 001036          828 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ  907 (1180)
Q Consensus       828 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  907 (1180)
                                          .++...|.++++|+.|++++|.+++..+..|..+++|+.|++++|++.+.+|.......+
T Consensus       166 --------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          166 --------------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             --------------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             --------------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence                                234336888999999999999999888889999999999999999988888888777789


Q ss_pred             CCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccce
Q 001036          908 LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG  987 (1180)
Q Consensus       908 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  987 (1180)
                      |+.|++++|++++..+..|.++                                                     +.|+.
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~  252 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHL-----------------------------------------------------VYLRF  252 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTC-----------------------------------------------------TTCCE
T ss_pred             ccEEECcCCcccccCHHHhcCc-----------------------------------------------------cccCe
Confidence            9999999999986544455443                                                     37999


Q ss_pred             EEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcC
Q 001036          988 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 1067 (1180)
Q Consensus       988 LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l 1067 (1180)
                      |||++|++++..+..|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..|..+++|+.|++++|++
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            99999999988888899999999999999999999999999999999999999999988888889999999999999999


Q ss_pred             cccCCCcccccccCCccccCCCCCCCCCCC
Q 001036         1068 SGKIPEWTAQFATFNKSSYDGNPFLCGLPL 1097 (1180)
Q Consensus      1068 ~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l 1097 (1180)
                      .+..+. ...+.......+.++...|..|.
T Consensus       333 ~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          333 ACDCRL-LWVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             ECSGGG-HHHHTTTTSSCCTTCCCBEEESG
T ss_pred             cCccch-HhHHhhhhccccCccCceeCCch
Confidence            887653 11222333456778888887764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.7e-35  Score=342.88  Aligned_cols=356  Identities=18%  Similarity=0.145  Sum_probs=260.2

Q ss_pred             hhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccC
Q 001036          612 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL  691 (1180)
Q Consensus       612 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L  691 (1180)
                      +.++++|+.|++++|.+++. | .+..+++|++|++++|.+++ +|  +. .+++|++|++++|.+++. |  ++++++|
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L  108 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKL  108 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred             hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cc-cCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence            45677888888888888764 3 56777888888888888774 44  33 377888888888887764 3  7777888


Q ss_pred             cEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcC
Q 001036          692 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN  771 (1180)
Q Consensus       692 ~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~  771 (1180)
                      ++|++++|++++ +|   +..+++|++|++++|++++.   .++.+++|++|++++|...+.+  .+..+++|++|++++
T Consensus       109 ~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          109 TYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             CEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence            888888888773 54   34677888888888887764   2667777888888887655554  366777788888888


Q ss_pred             CcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCc
Q 001036          772 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE  851 (1180)
Q Consensus       772 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~  851 (1180)
                      |++++ +|  ++.+++|+.|++++|++++.   .+..+++|++|++++|++++ +| ....++|+.|++++|.+++. | 
T Consensus       180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~-~-  249 (457)
T 3bz5_A          180 NKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTEL-D-  249 (457)
T ss_dssp             SCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCC-C-
T ss_pred             Cccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCc-C-
Confidence            87775 44  67777788888888877764   36677777888888777776 44 23345667777777766653 2 


Q ss_pred             ccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccc
Q 001036          852 GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL  931 (1180)
Q Consensus       852 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  931 (1180)
                        +..+++|+.|+++.|              +|+.|++++|++.+.+|  ++.+++|+.|++++|++.|.+|.....++.
T Consensus       250 --~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~  311 (457)
T 3bz5_A          250 --VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITE  311 (457)
T ss_dssp             --CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSC
T ss_pred             --HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceE
Confidence              234556666666554              46678888888887777  567899999999999988888754433321


Q ss_pred             ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCE
Q 001036          932 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 1011 (1180)
Q Consensus       932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~ 1011 (1180)
                      +.                                             ....+.|+.|++++|+|+|. |  ++++++|+.
T Consensus       312 L~---------------------------------------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~  343 (457)
T 3bz5_A          312 LD---------------------------------------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKS  343 (457)
T ss_dssp             CC---------------------------------------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSE
T ss_pred             ec---------------------------------------------hhhcccCCEEECCCCccccc-c--cccCCcCcE
Confidence            10                                             01134799999999999984 3  999999999


Q ss_pred             EeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCc
Q 001036         1012 LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 1074 (1180)
Q Consensus      1012 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 1074 (1180)
                      |++++|+|+|        ++.|+.|++++|+++|.     ..+..|..+++++|+++|.||..
T Consensus       344 L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          344 LSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             EECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             EECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            9999999997        24677788999999987     34566888999999999999973

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.2e-34  Score=338.54  Aligned_cols=345  Identities=25%  Similarity=0.358  Sum_probs=211.5

Q ss_pred             CCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEE
Q 001036          615 NTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL  694 (1180)
Q Consensus       615 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L  694 (1180)
                      +++++.|++.++.+....  .+..+++|++|++++|.+++ +|. +. .+++|++|++++|.+++..+  ++++++|++|
T Consensus        45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~-~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD-ITP-LK-NLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCC-chh-hh-ccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            345556666665554321  24445556666666665552 332 22 35566666666666654433  5556666666


Q ss_pred             EccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcC
Q 001036          695 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL  774 (1180)
Q Consensus       695 ~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  774 (1180)
                      ++++|.++ .++.  +..+++|++|++++|.+++.  ..+..+++|++|+++ |.+.+..  .+.++++|+.|++++|.+
T Consensus       118 ~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          118 TLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             ECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence            66666555 3332  23555666666666655542  135555566666654 3333222  255555666666666655


Q ss_pred             CCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccc
Q 001036          775 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF  854 (1180)
Q Consensus       775 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~  854 (1180)
                      .+.  ..+..+++|++|++++|.+.+..|  +..+++|+.|++++|++.+                        ++  .+
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~------------------------~~--~l  239 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD------------------------IG--TL  239 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC------------------------CG--GG
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc------------------------ch--hh
Confidence            432  234555555566665555554433  4445555555555555542                        11  46


Q ss_pred             cCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccc
Q 001036          855 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHES  934 (1180)
Q Consensus       855 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~  934 (1180)
                      ..+++|+.|++++|.+++..|  +..+++|++|++++|++++..+  +..+++|++|++++|++++..|  ++.      
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~------  307 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN------  307 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG------
T ss_pred             hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC------
Confidence            667777888888887776554  7777778888888887775444  6777788888888887776443  222      


Q ss_pred             cCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeC
Q 001036          935 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 1014 (1180)
Q Consensus       935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L 1014 (1180)
                                                                     ++.|+.|+|++|++++..|  ++.+++|+.|++
T Consensus       308 -----------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  338 (466)
T 1o6v_A          308 -----------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFF  338 (466)
T ss_dssp             -----------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred             -----------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence                                                           3367778888888876655  677778888888


Q ss_pred             ccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcc
Q 001036         1015 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus      1015 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
                      ++|++++.  ..++++++|+.|++++|++++.+|  +..++.|+.|++++|++++
T Consensus       339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            88888765  367777888888888888877776  7777888888888887776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.2e-34  Score=340.37  Aligned_cols=345  Identities=26%  Similarity=0.330  Sum_probs=259.3

Q ss_pred             CCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCE
Q 001036          639 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF  718 (1180)
Q Consensus       639 ~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~  718 (1180)
                      +++++.|+++++.+. .+|. +. .+++|++|++++|.+++..|  +.++++|++|++++|.++ .++.  +..+++|++
T Consensus        45 l~~l~~L~l~~~~i~-~l~~-~~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SIDG-VE-YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred             hccccEEecCCCCCc-cCcc-hh-hhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCE
Confidence            456777777777776 4553 22 36777777777777775544  677777777777777776 3333  346777777


Q ss_pred             EEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcC
Q 001036          719 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL  798 (1180)
Q Consensus       719 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  798 (1180)
                      |++++|.+++..+  +..+++|++|++++|.+.+. + .+..+++|+.|+++ |.+.+..  .++++++|++|++++|.+
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence            7777777765433  66677777777777776643 2 36666777777765 3444322  266666677777766666


Q ss_pred             CCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhh
Q 001036          799 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI  878 (1180)
Q Consensus       799 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~  878 (1180)
                      ++.  ..+..+++|++|++++|.+.+                       ..|   +..+++|+.|++++|.+++.  ..+
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~-----------------------~~~---~~~l~~L~~L~l~~n~l~~~--~~l  239 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISD-----------------------ITP---LGILTNLDELSLNGNQLKDI--GTL  239 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCC-----------------------CGG---GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred             CCC--hhhccCCCCCEEEecCCcccc-----------------------ccc---ccccCCCCEEECCCCCcccc--hhh
Confidence            543  235566666666666666543                       222   56688999999999999864  468


Q ss_pred             hcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCch
Q 001036          879 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV  958 (1180)
Q Consensus       879 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  958 (1180)
                      ..+++|+.|++++|.+.+..|  +..+++|+.|++++|++++..|  +..                              
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~------------------------------  285 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG------------------------------  285 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT------------------------------
T ss_pred             hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC------------------------------
Confidence            999999999999999997665  8899999999999999987654  333                              


Q ss_pred             hhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEEC
Q 001036          959 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 1038 (1180)
Q Consensus       959 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L 1038 (1180)
                                             ++.|+.|++++|++++..|  ++.+++|+.|+|++|++++..|  ++.+++|+.|++
T Consensus       286 -----------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  338 (466)
T 1o6v_A          286 -----------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF  338 (466)
T ss_dssp             -----------------------CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred             -----------------------CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence                                   3479999999999997655  8999999999999999998877  789999999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCC
Q 001036         1039 SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 1093 (1180)
Q Consensus      1039 s~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc 1093 (1180)
                      ++|++++.  ..+..++.|+.|++++|++++.+|  ...+..+....+.+|++..
T Consensus       339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            99999975  578999999999999999999887  6777888888899998765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8e-35  Score=325.04  Aligned_cols=260  Identities=34%  Similarity=0.560  Sum_probs=230.0

Q ss_pred             CCCcEEECcCCcCCC--CCcccccCCCCCCeEEccC-CcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEE
Q 001036          762 SSLKGLYLNNNNLSG--KIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV  838 (1180)
Q Consensus       762 ~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L  838 (1180)
                      .+++.|++++|.+.+  .+|..++++++|++|++++ |.+.+.+|..|.++++|++|++++|++++.+|.          
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----------  119 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD----------  119 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----------
Confidence            467777777777777  7777888888888888884 788888888888888888888888888755443          


Q ss_pred             EcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCC-CCCEEECcCCc
Q 001036          839 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN-QLQLLDLSDNN  917 (1180)
Q Consensus       839 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~  917 (1180)
                                    .|.++++|++|++++|.+++.+|..|+.+++|++|++++|++++.+|..+..++ +|++|++++|+
T Consensus       120 --------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          120 --------------FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             --------------GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             --------------HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                          677888999999999999989999999999999999999999999999999998 99999999999


Q ss_pred             CcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccC
Q 001036          918 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG  997 (1180)
Q Consensus       918 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g  997 (1180)
                      +++.+|..+..+                                                      .|+.|++++|++++
T Consensus       186 l~~~~~~~~~~l------------------------------------------------------~L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          186 LTGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEG  211 (313)
T ss_dssp             EEEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEE
T ss_pred             eeccCChHHhCC------------------------------------------------------cccEEECcCCcccC
Confidence            999888777542                                                      28899999999999


Q ss_pred             CCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccc
Q 001036          998 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077 (1180)
Q Consensus       998 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~ 1077 (1180)
                      .+|..|+++++|+.|+|++|++++.+|. +..+++|+.|||++|+++|.+|..+..++.|++|++++|+++|.+|. ..+
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~  289 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN  289 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STT
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-Ccc
Confidence            9999999999999999999999988877 88899999999999999999999999999999999999999999999 488


Q ss_pred             cccCCccccCCCCCCCCCCCCCCC
Q 001036         1078 FATFNKSSYDGNPFLCGLPLPICR 1101 (1180)
Q Consensus      1078 ~~~~~~~~~~~N~~lc~~~l~~c~ 1101 (1180)
                      +.++...++.+||++||.|+.+|.
T Consensus       290 l~~L~~l~l~~N~~lc~~p~~~C~  313 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             ccccChHHhcCCCCccCCCCCCCC
Confidence            999999999999999999887773

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.7e-34  Score=332.41  Aligned_cols=356  Identities=19%  Similarity=0.199  Sum_probs=281.7

Q ss_pred             CcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhh
Q 001036          582 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG  661 (1180)
Q Consensus       582 ~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~  661 (1180)
                      ..+..+..+++|++|++++|.+.+ +|.  +..+++|+.|++++|.+++.   +++.+++|++|++++|.+++ +|  +.
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~~  103 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--VT  103 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT
T ss_pred             ccccChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--cC
Confidence            334567788999999999999887 463  67899999999999999985   48899999999999999995 55  44


Q ss_pred             hcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCc
Q 001036          662 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR  741 (1180)
Q Consensus       662 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  741 (1180)
                       .+++|++|++++|.+++. |  ++.+++|++|++++|++++ ++   +..+++|++|++++|...+.+  .+..+++|+
T Consensus       104 -~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          104 -PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             -TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             -CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence             489999999999999974 4  8999999999999999985 54   357899999999999766555  478999999


Q ss_pred             eeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCc
Q 001036          742 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN  821 (1180)
Q Consensus       742 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  821 (1180)
                      +|++++|++++. |  ++.+++|+.|++++|++++.   .++.+++|++|++++|++++ +|  +..+++|+.|++++|+
T Consensus       174 ~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          174 TLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             EEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred             EEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence            999999999974 4  88999999999999999865   38899999999999999998 56  8899999999999999


Q ss_pred             ccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCc-
Q 001036          822 ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI-  900 (1180)
Q Consensus       822 l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-  900 (1180)
                      +++..+..  ..+++.|++++|               +|+.|++++|.+.+.+|  ++.+++|+.|++++|+..+.+|. 
T Consensus       245 l~~~~~~~--l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~  305 (457)
T 3bz5_A          245 LTELDVST--LSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ  305 (457)
T ss_dssp             CSCCCCTT--CTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT
T ss_pred             CCCcCHHH--CCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC
Confidence            99765433  335555555443               23344455555444444  34445555555555544443332 


Q ss_pred             -------cccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccc
Q 001036          901 -------QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI  973 (1180)
Q Consensus       901 -------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  973 (1180)
                             .+.++++|++|++++|++++. +  ++++                                            
T Consensus       306 ~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l--------------------------------------------  338 (457)
T 3bz5_A          306 AAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHN--------------------------------------------  338 (457)
T ss_dssp             TCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTC--------------------------------------------
T ss_pred             CCcceEechhhcccCCEEECCCCccccc-c--cccC--------------------------------------------
Confidence                   134457899999999999984 2  4443                                            


Q ss_pred             hhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccC
Q 001036          974 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 1053 (1180)
Q Consensus       974 ~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~ 1053 (1180)
                               +.|+.||+++|+|+|        ++.|..|++++|+++|.     +++..|+.+|+++|+++|.||..+.+
T Consensus       339 ---------~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          339 ---------TKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             ---------TTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             ---------CcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence                     379999999999996        24677789999999987     35567888999999999999987655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2e-33  Score=325.79  Aligned_cols=335  Identities=21%  Similarity=0.200  Sum_probs=203.2

Q ss_pred             CCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCcee
Q 001036          664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL  743 (1180)
Q Consensus       664 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  743 (1180)
                      +++++.|++++|.++...+..|.++++|++|++++|.++ .++...+..+++|++|++++|.+++..|..+.++++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            345555555555555443334455555555555555554 3333333345555555555555555444445555555555


Q ss_pred             eccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCccc
Q 001036          744 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS  823 (1180)
Q Consensus       744 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  823 (1180)
                      ++++|.++...+..|.++++|++|++++|++.+..|..++.+++|++|++++|++++.   .+..+++|+.|++++|.++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            5555555533333344555555555555555444444455555555555555554432   1233444445555444443


Q ss_pred             ccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCcccc
Q 001036          824 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC  903 (1180)
Q Consensus       824 ~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  903 (1180)
                                             +      +...++|+.|++++|.++.. |..  ..++|+.|++++|.+++.  ..+.
T Consensus       200 -----------------------~------~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~  245 (390)
T 3o6n_A          200 -----------------------T------LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLL  245 (390)
T ss_dssp             -----------------------E------EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGG
T ss_pred             -----------------------c------cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHc
Confidence                                   2      22334677777777777644 322  235677777777777653  4677


Q ss_pred             CCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhcc
Q 001036          904 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS  983 (1180)
Q Consensus       904 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  983 (1180)
                      .+++|++|++++|++++..|..|..++                                                     
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----------------------------------------------------  272 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYHPFVKMQ-----------------------------------------------------  272 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCS-----------------------------------------------------
T ss_pred             CCCCccEEECCCCcCCCcChhHccccc-----------------------------------------------------
Confidence            777777777777777777666665433                                                     


Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      .|+.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..++.+++|+.|++++|++++. |  +..++.|+.|+++
T Consensus       273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~  347 (390)
T 3o6n_A          273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS  347 (390)
T ss_dssp             SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred             cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcC
Confidence            67778888887774 5666777888888888888888 5677788888899999999988844 3  6778888999999


Q ss_pred             CCcCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036         1064 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus      1064 ~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
                      +|++++....  ..+..+....+.+++..|.++
T Consensus       348 ~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          348 HNDWDCNSLR--ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             SSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred             CCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence            9988874322  334555666678888888765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-33  Score=344.03  Aligned_cols=333  Identities=23%  Similarity=0.215  Sum_probs=208.3

Q ss_pred             cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEEC
Q 001036          690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL  769 (1180)
Q Consensus       690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l  769 (1180)
                      +++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|+++++|++|++
T Consensus        52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            3444444444443 344443344444444444444444444444444444444444444444444444444444555555


Q ss_pred             cCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccccc
Q 001036          770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL  849 (1180)
Q Consensus       770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~  849 (1180)
                      ++|.+++..+..|+++++|++|++++|.+++..|..|..+++|++|++++|.+++..+  ...++|+.|++++|.+.+  
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~~--  206 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLST--  206 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCSE--
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCcccc--
Confidence            5444443333333444455555555554444444444445555555555554443211  112344555555554432  


Q ss_pred             CcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCc
Q 001036          850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT  929 (1180)
Q Consensus       850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  929 (1180)
                          +...++|+.|++++|.++...+..   .++|+.|+|++|.+++  +..+..+++|+.|+|++|.+++.+|..|+++
T Consensus       207 ----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          207 ----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             ----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence                233456778888888777443322   2578888888888875  4677788888888888888888877777654


Q ss_pred             ccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCC
Q 001036          930 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 1009 (1180)
Q Consensus       930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L 1009 (1180)
                      +                                                     .|+.|+|++|++++ +|..++.+++|
T Consensus       278 ~-----------------------------------------------------~L~~L~Ls~N~l~~-l~~~~~~l~~L  303 (597)
T 3oja_B          278 Q-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIPTL  303 (597)
T ss_dssp             S-----------------------------------------------------SCCEEECTTSCCCE-EECSSSCCTTC
T ss_pred             c-----------------------------------------------------CCCEEECCCCCCCC-CCcccccCCCC
Confidence            3                                                     68888888888885 57777888899


Q ss_pred             CEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCC
Q 001036         1010 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGN 1089 (1180)
Q Consensus      1010 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N 1089 (1180)
                      +.|+|++|.++ .+|..++.+++|+.|+|++|++++. |  +..++.|+.|++++|+++|..+.  ..+..+....+.++
T Consensus       304 ~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~  377 (597)
T 3oja_B          304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDA  377 (597)
T ss_dssp             CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCC
T ss_pred             cEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccc
Confidence            99999999998 6788888899999999999999854 3  67788999999999999886532  34566667778899


Q ss_pred             CCCCCCC
Q 001036         1090 PFLCGLP 1096 (1180)
Q Consensus      1090 ~~lc~~~ 1096 (1180)
                      +..|+.+
T Consensus       378 ~~~C~~~  384 (597)
T 3oja_B          378 DQHCKID  384 (597)
T ss_dssp             CCCCCTT
T ss_pred             cccCCcc
Confidence            9999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.4e-31  Score=310.28  Aligned_cols=315  Identities=22%  Similarity=0.266  Sum_probs=262.8

Q ss_pred             CCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCC
Q 001036          638 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE  717 (1180)
Q Consensus       638 ~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~  717 (1180)
                      .+++++.+++++|.++ .+|..++..+++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|+
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence            4578899999999987 788887777999999999999999888889999999999999999998 55555557899999


Q ss_pred             EEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCc
Q 001036          718 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH  797 (1180)
Q Consensus       718 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  797 (1180)
                      +|++++|.++...+..|.++++|++|++++|.+.+..|..+.++++|++|++++|++++.   .++.+++|+.|++++|.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            999999999977666789999999999999999998888999999999999999999854   35678999999999998


Q ss_pred             CCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchh
Q 001036          798 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW  877 (1180)
Q Consensus       798 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  877 (1180)
                      +++     +...++|+.|++++|.+...                        |.   ...++|+.|++++|.+++.  .+
T Consensus       198 l~~-----~~~~~~L~~L~l~~n~l~~~------------------------~~---~~~~~L~~L~l~~n~l~~~--~~  243 (390)
T 3o6n_A          198 LST-----LAIPIAVEELDASHNSINVV------------------------RG---PVNVELTILKLQHNNLTDT--AW  243 (390)
T ss_dssp             CSE-----EECCSSCSEEECCSSCCCEE------------------------EC---CCCSSCCEEECCSSCCCCC--GG
T ss_pred             ccc-----cCCCCcceEEECCCCeeeec------------------------cc---cccccccEEECCCCCCccc--HH
Confidence            874     23456788899888888632                        11   1235788888888888764  57


Q ss_pred             hhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCc
Q 001036          878 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS  957 (1180)
Q Consensus       878 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  957 (1180)
                      +..+++|++|++++|.+++..|..+..+++|++|+|++|++++. |..+..                             
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~-----------------------------  293 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQP-----------------------------  293 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSC-----------------------------
T ss_pred             HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCC-----------------------------
Confidence            88888899999999988888888888899999999999988764 222222                             


Q ss_pred             hhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEE
Q 001036          958 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037 (1180)
Q Consensus       958 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ 1037 (1180)
                                              ++.|+.|||++|+++ .+|..++.+++|+.|+|++|++++. |  +..+++|+.|+
T Consensus       294 ------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~  345 (390)
T 3o6n_A          294 ------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT  345 (390)
T ss_dssp             ------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred             ------------------------CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEE
Confidence                                    337889999999998 5777888899999999999999854 3  77788999999


Q ss_pred             CcCCcCcccCCc
Q 001036         1038 LSYNKLSGKIPR 1049 (1180)
Q Consensus      1038 Ls~N~l~g~ip~ 1049 (1180)
                      +++|++++.-..
T Consensus       346 l~~N~~~~~~~~  357 (390)
T 3o6n_A          346 LSHNDWDCNSLR  357 (390)
T ss_dssp             CCSSCEEHHHHH
T ss_pred             cCCCCccchhHH
Confidence            999999875443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.8e-33  Score=309.43  Aligned_cols=252  Identities=30%  Similarity=0.502  Sum_probs=171.9

Q ss_pred             cCceeeccCCcccc--cCCCcCCCCCCCcEEECcC-CcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEE
Q 001036          739 NLRWLLLEGNHFVG--EIPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL  815 (1180)
Q Consensus       739 ~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  815 (1180)
                      +++.|++++|.+.+  .+|..++++++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..|..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            44555555555555  4555555555555555553 55555556666666666666666666665666666666666666


Q ss_pred             EccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCC-CCCEEecCCCcc
Q 001036          816 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS-QLSHLNLAHNNL  894 (1180)
Q Consensus       816 ~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l  894 (1180)
                      ++++|++++.+|.                        .+.++++|++|++++|++++.+|..++.++ +|++|++++|++
T Consensus       131 ~Ls~N~l~~~~p~------------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          131 DFSYNALSGTLPP------------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCCG------------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             eCCCCccCCcCCh------------------------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            6666666544332                        455566666666666666666666666666 677777777777


Q ss_pred             ccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccch
Q 001036          895 EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA  974 (1180)
Q Consensus       895 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  974 (1180)
                      ++.+|..+..++ |++|++++|++++.+|..|..++                                            
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~--------------------------------------------  221 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK--------------------------------------------  221 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS--------------------------------------------
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC--------------------------------------------
Confidence            766777766665 77777777777766666555433                                            


Q ss_pred             hcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCC
Q 001036          975 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 1054 (1180)
Q Consensus       975 ~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l 1054 (1180)
                               .|+.|+|++|++++.+|. +..+++|++|+|++|+++|.+|..|+.+++|+.|||++|+++|.+|.. ..+
T Consensus       222 ---------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l  290 (313)
T 1ogq_A          222 ---------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             ---------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             ---------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence                     577777777777766655 777788888888888888888888888888888888888888888876 778


Q ss_pred             CCCCEEEcCCCc-Cccc
Q 001036         1055 NTLAIFIVAYNN-LSGK 1070 (1180)
Q Consensus      1055 ~~L~~l~ls~N~-l~g~ 1070 (1180)
                      +.|+.+++++|+ +.|.
T Consensus       291 ~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          291 QRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GGSCGGGTCSSSEEEST
T ss_pred             cccChHHhcCCCCccCC
Confidence            888888888887 6664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.5e-31  Score=301.09  Aligned_cols=304  Identities=22%  Similarity=0.353  Sum_probs=208.9

Q ss_pred             CCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCcee
Q 001036          664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL  743 (1180)
Q Consensus       664 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  743 (1180)
                      +++|+.|++++|.+.. +| .+..+++|++|++++|+++ .++.  +..+++|++|++++|.++..  +.+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            4556666666665553 22 2555666666666666665 3443  34566666666666666542  246666667777


Q ss_pred             eccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCccc
Q 001036          744 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS  823 (1180)
Q Consensus       744 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  823 (1180)
                      ++++|.+.+..+  +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|++.
T Consensus       116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            777666664432  6667777777777775543333 36677777777777777664433  666777777777777665


Q ss_pred             ccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCcccc
Q 001036          824 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC  903 (1180)
Q Consensus       824 ~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  903 (1180)
                      +                        ++  .+..+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +.
T Consensus       191 ~------------------------~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~  240 (347)
T 4fmz_A          191 D------------------------IS--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA  240 (347)
T ss_dssp             C------------------------CG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             c------------------------cc--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence            2                        12  25667778888888888876544  7778888888888888875444  77


Q ss_pred             CCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhcc
Q 001036          904 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS  983 (1180)
Q Consensus       904 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  983 (1180)
                      .+++|++|++++|++++.  +.+..                                                     ++
T Consensus       241 ~l~~L~~L~l~~n~l~~~--~~~~~-----------------------------------------------------l~  265 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISDI--NAVKD-----------------------------------------------------LT  265 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGTT-----------------------------------------------------CT
T ss_pred             cCCCCCEEECCCCccCCC--hhHhc-----------------------------------------------------CC
Confidence            888888888888887753  12222                                                     33


Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      +|+.|++++|++++.  +.+..+++|+.|++++|++++..|..|+++++|+.|++++|++++..|  +..++.|+.|+++
T Consensus       266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  341 (347)
T 4fmz_A          266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA  341 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred             CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence            788888888888864  457888899999999999998888889999999999999999987766  8888999999999


Q ss_pred             CCcCc
Q 001036         1064 YNNLS 1068 (1180)
Q Consensus      1064 ~N~l~ 1068 (1180)
                      +|+++
T Consensus       342 ~N~i~  346 (347)
T 4fmz_A          342 NQVIK  346 (347)
T ss_dssp             CC---
T ss_pred             hhccc
Confidence            98875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=3.7e-31  Score=323.68  Aligned_cols=315  Identities=22%  Similarity=0.270  Sum_probs=232.4

Q ss_pred             CCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCE
Q 001036          639 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF  718 (1180)
Q Consensus       639 ~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~  718 (1180)
                      +++++.+++++|.+. .+|..++..+++|++|++++|.+++..|..|+++++|++|++++|.+++ +|...+.++++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCE
Confidence            456777788777776 6777766667888888888888887777788888888888888888873 44444456777777


Q ss_pred             EEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcC
Q 001036          719 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL  798 (1180)
Q Consensus       719 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  798 (1180)
                      |++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..   ++.+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence            777777777665555677777777777777777766667777777777777777776431   34456666666666665


Q ss_pred             CCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhh
Q 001036          799 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI  878 (1180)
Q Consensus       799 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~  878 (1180)
                      ++     +...++|+.|++++|.+..                        ++. .  ..++|+.|++++|.+++  +.++
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~------------------------~~~-~--~~~~L~~L~L~~n~l~~--~~~l  250 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINV------------------------VRG-P--VNVELTILKLQHNNLTD--TAWL  250 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCE------------------------EEC-S--CCSCCCEEECCSSCCCC--CGGG
T ss_pred             cc-----ccCCchhheeeccCCcccc------------------------ccc-c--cCCCCCEEECCCCCCCC--Chhh
Confidence            43     2233456666666665542                        222 1  12578889999998886  4678


Q ss_pred             hcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCch
Q 001036          879 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV  958 (1180)
Q Consensus       879 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  958 (1180)
                      ..+++|+.|+|++|.+.+.+|..|..+++|++|+|++|++++. |..+..                              
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~------------------------------  299 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQP------------------------------  299 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSC------------------------------
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Cccccc------------------------------
Confidence            8899999999999999988899999999999999999998874 333222                              


Q ss_pred             hhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEEC
Q 001036          959 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 1038 (1180)
Q Consensus       959 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L 1038 (1180)
                                             ++.|+.|||++|.++ .+|..++.+++|+.|+|++|.+++. |  ++.+++|+.|++
T Consensus       300 -----------------------l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l  352 (597)
T 3oja_B          300 -----------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL  352 (597)
T ss_dssp             -----------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred             -----------------------CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEe
Confidence                                   337899999999998 6888889999999999999999865 3  677889999999


Q ss_pred             cCCcCcccCCcc
Q 001036         1039 SYNKLSGKIPRQ 1050 (1180)
Q Consensus      1039 s~N~l~g~ip~~ 1050 (1180)
                      ++|++++..+..
T Consensus       353 ~~N~~~~~~~~~  364 (597)
T 3oja_B          353 SHNDWDCNSLRA  364 (597)
T ss_dssp             CSSCEEHHHHHH
T ss_pred             eCCCCCChhHHH
Confidence            999998765433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.4e-30  Score=297.00  Aligned_cols=305  Identities=26%  Similarity=0.373  Sum_probs=236.6

Q ss_pred             CCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCC
Q 001036          638 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE  717 (1180)
Q Consensus       638 ~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~  717 (1180)
                      .+++|+.|++++|.+. .+|. +. .+++|++|++++|.+++..+  +.++++|++|++++|.++ .+|.  +..+++|+
T Consensus        42 ~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred             hcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcCC
Confidence            4456666677766665 4543 33 37788888888888775443  778888888888888877 4543  45788888


Q ss_pred             EEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCc
Q 001036          718 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH  797 (1180)
Q Consensus       718 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  797 (1180)
                      +|++++|.+++..+  +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            88888888876543  7788888888888886665444 48888999999999998875443  7888999999999998


Q ss_pred             CCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchh
Q 001036          798 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW  877 (1180)
Q Consensus       798 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  877 (1180)
                      +.+..+  +..+++|+.|++++|.+.+.                        +  .+..+++|+.|++++|.+++..+  
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~------------------------~--~~~~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDI------------------------T--PVANMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCC------------------------G--GGGGCTTCCEEECCSSCCCCCGG--
T ss_pred             cccccc--ccCCCccceeecccCCCCCC------------------------c--hhhcCCcCCEEEccCCccCCCcc--
Confidence            875443  77888999999988887632                        1  25677888999999998886544  


Q ss_pred             hhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCc
Q 001036          878 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS  957 (1180)
Q Consensus       878 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  957 (1180)
                      +..+++|++|++++|.+++.  ..+..+++|++|++++|++++.  +.+..                             
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~-----------------------------  285 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNN-----------------------------  285 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGG-----------------------------
T ss_pred             hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcC-----------------------------
Confidence            88889999999999988863  4688899999999999988764  12222                             


Q ss_pred             hhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEE
Q 001036          958 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037 (1180)
Q Consensus       958 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ 1037 (1180)
                                              ++.|+.|++++|++++..|..++++++|++|++++|++++..|  ++.+++|+.||
T Consensus       286 ------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  339 (347)
T 4fmz_A          286 ------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD  339 (347)
T ss_dssp             ------------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred             ------------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence                                    3479999999999998888999999999999999999998777  88899999999


Q ss_pred             CcCCcCc
Q 001036         1038 LSYNKLS 1044 (1180)
Q Consensus      1038 Ls~N~l~ 1044 (1180)
                      +++|+|+
T Consensus       340 l~~N~i~  346 (347)
T 4fmz_A          340 FANQVIK  346 (347)
T ss_dssp             SSCC---
T ss_pred             hhhhccc
Confidence            9999986

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.9e-30  Score=290.70  Aligned_cols=288  Identities=22%  Similarity=0.289  Sum_probs=183.3

Q ss_pred             cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEEC
Q 001036          690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL  769 (1180)
Q Consensus       690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l  769 (1180)
                      .++.++++++.++ .+|..+   .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5667777777766 666554   256777777777777666667777777777777777777776777777777777777


Q ss_pred             cCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccc--cCCCCcCCCcccEEEcCCccccc
Q 001036          770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG--SLPSCFYPLSIKQVHLSKNMLHG  847 (1180)
Q Consensus       770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~L~~L~l~~n~~~~  847 (1180)
                      ++|+++ .+|..+.  ++|++|++++|++++..+..|.++++|+.|++++|.++.  ..|.                   
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------  167 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-------------------  167 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-------------------
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-------------------
Confidence            777776 5555444  677777777777776666667777777777777777752  2222                   


Q ss_pred             ccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCcc
Q 001036          848 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  927 (1180)
Q Consensus       848 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  927 (1180)
                           .+..+ +|+.|++++|++++ +|..+.  ++|++|++++|.+++..|..+..+++|++|++++|++++..|..|.
T Consensus       168 -----~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          168 -----AFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             -----SSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             -----cccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence                 34444 55555666665553 333322  4566666666666655556666666666666666666655554443


Q ss_pred             CcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCC
Q 001036          928 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT 1007 (1180)
Q Consensus       928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~ 1007 (1180)
                      .++                                                     .|+.|+|++|+++ .+|..+..++
T Consensus       239 ~l~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~  264 (332)
T 2ft3_A          239 FLP-----------------------------------------------------TLRELHLDNNKLS-RVPAGLPDLK  264 (332)
T ss_dssp             GCT-----------------------------------------------------TCCEEECCSSCCC-BCCTTGGGCT
T ss_pred             CCC-----------------------------------------------------CCCEEECCCCcCe-ecChhhhcCc
Confidence            322                                                     5666666666666 5666666666


Q ss_pred             CCCEEeCccccccccccccccCC------CCCCEEECcCCcCc--ccCCccccCCCCCCEEEcCCCc
Q 001036         1008 RIQTLNLSHNNLTGTIPLTFSNL------RHIESLDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNN 1066 (1180)
Q Consensus      1008 ~L~~L~Ls~N~l~g~~p~~~~~l------~~L~~L~Ls~N~l~--g~ip~~l~~l~~L~~l~ls~N~ 1066 (1180)
                      +|++|++++|++++..+..|...      ..|+.|++++|.++  +..|..|..++.|+.+++++|+
T Consensus       265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            66666666666666555555543      45667777777666  5566666667777777776663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7e-30  Score=288.54  Aligned_cols=291  Identities=24%  Similarity=0.312  Sum_probs=208.7

Q ss_pred             cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEEC
Q 001036          690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL  769 (1180)
Q Consensus       690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l  769 (1180)
                      +++.++++++.++ .+|..+   .+.+++|++++|++++..+..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            5666777776666 566544   256777777777777666667777777777777777777777777777777888888


Q ss_pred             cCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccccc
Q 001036          770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL  849 (1180)
Q Consensus       770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~  849 (1180)
                      ++|+++ .+|..+.  ++|++|++++|.+++..+..+.++++|+.|++++|++...                     +..
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~  163 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIE  163 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------CcC
Confidence            777776 5555443  6777888888877776666777778888888877777521                     111


Q ss_pred             CcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCc
Q 001036          850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT  929 (1180)
Q Consensus       850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  929 (1180)
                      + ..|.++++|+.|++++|.++. +|..+.  ++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+
T Consensus       164 ~-~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          164 N-GAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             T-TGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             h-hhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence            2 256777778888888887774 444333  678888888888887777788888888888888888877766655443


Q ss_pred             ccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCC
Q 001036          930 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 1009 (1180)
Q Consensus       930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L 1009 (1180)
                      +                                                     .|+.|+|++|+++ .+|..+..+++|
T Consensus       240 ~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L  265 (330)
T 1xku_A          240 P-----------------------------------------------------HLRELHLNNNKLV-KVPGGLADHKYI  265 (330)
T ss_dssp             T-----------------------------------------------------TCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             C-----------------------------------------------------CCCEEECCCCcCc-cCChhhccCCCc
Confidence            2                                                     6788888888887 677788888888


Q ss_pred             CEEeCccccccccccccccCC------CCCCEEECcCCcCcc--cCCccccCCCCCCEEEcCCCc
Q 001036         1010 QTLNLSHNNLTGTIPLTFSNL------RHIESLDLSYNKLSG--KIPRQLVDLNTLAIFIVAYNN 1066 (1180)
Q Consensus      1010 ~~L~Ls~N~l~g~~p~~~~~l------~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~l~ls~N~ 1066 (1180)
                      ++|++++|++++..+..|...      ..++.|++++|.+..  ..|..|..+..++.+++++|+
T Consensus       266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            888888888887777777543      678888888888763  556777888888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.4e-29  Score=284.33  Aligned_cols=230  Identities=30%  Similarity=0.350  Sum_probs=133.3

Q ss_pred             cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEEC
Q 001036          690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL  769 (1180)
Q Consensus       690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l  769 (1180)
                      .+++|++++|.++ .++...+..+++|++|++++|++++..|..+.++++|++|++++|.++ .+|..+.  ++|++|++
T Consensus        55 ~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            4444444444444 222222234455555555555555444555555556666666666555 3333332  56666666


Q ss_pred             cCCcCCCCCcccccCCCCCCeEEccCCcCC--CCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccc
Q 001036          770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG  847 (1180)
Q Consensus       770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~  847 (1180)
                      ++|++.+..+..+..+++|++|++++|.++  +..|..+..+ +|+.|++++|++++ +|..+. .+|++|++++|.+.+
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~i~~  207 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP-ETLNELHLDHNKIQA  207 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC-SSCSCCBCCSSCCCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc-CCCCEEECCCCcCCc
Confidence            666666554555666666666666666664  3455566655 67777777777663 343222 344555555555543


Q ss_pred             ccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCcc
Q 001036          848 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  927 (1180)
Q Consensus       848 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  927 (1180)
                      ..+. .|.++++|+.|++++|++++..|.+|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus       208 ~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          208 IELE-DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             CCTT-SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             cCHH-HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence            3333 5666677777777777777666666777777777777777776 5666666677777777777777665555554


Q ss_pred             C
Q 001036          928 N  928 (1180)
Q Consensus       928 ~  928 (1180)
                      .
T Consensus       286 ~  286 (332)
T 2ft3_A          286 P  286 (332)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.8e-29  Score=281.68  Aligned_cols=253  Identities=24%  Similarity=0.342  Sum_probs=157.7

Q ss_pred             CCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEE
Q 001036          640 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL  719 (1180)
Q Consensus       640 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L  719 (1180)
                      .+++.++++++.++ .+|..+   .+.+++|++++|.+++..+..|.++++|++|++++|++++..|..+ ..+++|++|
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L  105 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERL  105 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEE
T ss_pred             CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEE
Confidence            46777777777776 566543   2566677777777666555566666666666666666653323332 344555555


Q ss_pred             EccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCC
Q 001036          720 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE  799 (1180)
Q Consensus       720 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  799 (1180)
                      ++++|.++                         .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+.
T Consensus       106 ~Ls~n~l~-------------------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A          106 YLSKNQLK-------------------------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             ECCSSCCS-------------------------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCC-------------------------ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence            55555444                         2232222  45555555555555444445555566666666665553


Q ss_pred             C--CCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchh
Q 001036          800 G--PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW  877 (1180)
Q Consensus       800 ~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  877 (1180)
                      .  ..+..+.++++|++|++++|++++ +|..+. .+|+.|++++|.+.+..|. .|.++++|+.|++++|.+++..+..
T Consensus       159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~  235 (330)
T 1xku_A          159 SSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP-PSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGS  235 (330)
T ss_dssp             GGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC-TTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccCcChhhccCCCCcCEEECCCCcccc-CCcccc-ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChhh
Confidence            2  445556666666666666666652 333322 4555555555555544444 6777888888888888888777777


Q ss_pred             hhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036          878 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN  928 (1180)
Q Consensus       878 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  928 (1180)
                      +..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus       236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~  285 (330)
T 1xku_A          236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  285 (330)
T ss_dssp             GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence            888888888888888887 67777888888888888888887766665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4.7e-33  Score=331.31  Aligned_cols=362  Identities=19%  Similarity=0.130  Sum_probs=232.3

Q ss_pred             CCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCc----cCCccccCcccCcEEEccCcccccccChhhhhcCC-
Q 001036          640 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV-  714 (1180)
Q Consensus       640 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~-  714 (1180)
                      +++++|++++|.++......++..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..++..+. 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4677888888887744444445557889999999998874    34667777888999999999887555555655565 


Q ss_pred             ---CCCEEEccCCcccc----cccccccCCccCceeeccCCcccccCCCcC-----CCCCCCcEEECcCCcCCCCC----
Q 001036          715 ---NLEFLSLSNNSLKG----HIFSRIFSLRNLRWLLLEGNHFVGEIPQSL-----SKCSSLKGLYLNNNNLSGKI----  778 (1180)
Q Consensus       715 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~----  778 (1180)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888888874    457777888888888888888765433322     22457888888888777533    


Q ss_pred             cccccCCCCCCeEEccCCcCCCCCCcccc-----CCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCccc
Q 001036          779 PRWLGNLKGLQHIVMPKNHLEGPIPVEFC-----RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT  853 (1180)
Q Consensus       779 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~  853 (1180)
                      +..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+++....                   .++. .
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~-~  222 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCG-I  222 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHH-H
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHH-H
Confidence            45556667777777777776544333332     245677777777766532000                   1233 4


Q ss_pred             ccCCCCCcEEECcCccCcccc-----chhhhcCCCCCEEecCCCccccC----CCccccCCCCCCEEECcCCcCcccCCC
Q 001036          854 FFNCSSLVTLDLSYNYLNGSI-----PDWIDGLSQLSHLNLAHNNLEGE----VPIQLCRLNQLQLLDLSDNNLHGLIPS  924 (1180)
Q Consensus       854 ~~~~~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~  924 (1180)
                      +..+++|+.|++++|.+++..     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|++++..+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            555666777777777665432     22223466677777777766643    455566667777777777766543222


Q ss_pred             CccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCC----CC
Q 001036          925 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH----IP 1000 (1180)
Q Consensus       925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~----~p 1000 (1180)
                      .+...-                                                ....+.|+.|+|++|.+++.    +|
T Consensus       303 ~l~~~l------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          303 LLCETL------------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             HHHHHH------------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             HHHHHh------------------------------------------------ccCCccceeeEcCCCCCchHHHHHHH
Confidence            211100                                                00012567777777777654    45


Q ss_pred             ccccCCCCCCEEeCccccccccccccccC-----CCCCCEEECcCCcCcc----cCCccccCCCCCCEEEcCCCcCcc
Q 001036         1001 PQIGNLTRIQTLNLSHNNLTGTIPLTFSN-----LRHIESLDLSYNKLSG----KIPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus      1001 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~-----l~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
                      ..+..+++|++|+|++|++++..+..+..     .++|+.|+|++|++++    .+|..+..++.|++|++++|++++
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            55566677777777777777655554442     5577777777777775    667777777777777777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=6.6e-32  Score=321.43  Aligned_cols=207  Identities=17%  Similarity=0.131  Sum_probs=120.8

Q ss_pred             cccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCC----CCCCCCCCCCccEEEccCCcccccCChhhhhcCC--
Q 001036          592 ELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP----FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP--  665 (1180)
Q Consensus       592 ~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~--  665 (1180)
                      +++.|+++++++.......++..+++|+.|++++|.+++.    ++..+..+++|++|++++|.+.+..+..++..++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            4556666666655444344455667777777777776532    2334455677888888888776544555555455  


Q ss_pred             --CCcEEEccCCcCCc----cCCccccCcccCcEEEccCcccccccChhhhh----cCCCCCEEEccCCcccccc----c
Q 001036          666 --SLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM----CCVNLEFLSLSNNSLKGHI----F  731 (1180)
Q Consensus       666 --~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~----~~~~L~~L~L~~n~l~~~~----~  731 (1180)
                        +|++|++++|.++.    .+|..+..+++|++|++++|.+++..+..+..    ..++|++|++++|.+++..    +
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              68888888888874    45777788888888888888876443333322    2446777777777766533    3


Q ss_pred             ccccCCccCceeeccCCcccccCCCcCC-----CCCCCcEEECcCCcCCCC----CcccccCCCCCCeEEccCCcC
Q 001036          732 SRIFSLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGK----IPRWLGNLKGLQHIVMPKNHL  798 (1180)
Q Consensus       732 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l  798 (1180)
                      ..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  239 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence            4444556666666666665543222222     133555555555555432    233344444444444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.9e-28  Score=279.46  Aligned_cols=282  Identities=22%  Similarity=0.234  Sum_probs=188.1

Q ss_pred             cccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEE
Q 001036          688 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL  767 (1180)
Q Consensus       688 l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  767 (1180)
                      |+.....+.+++.++ .+|..++   ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            444455677777777 7776553   578888888888877666678888888888888888887777778888888888


Q ss_pred             ECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCC-ccccCCCCCCEEEccCCc-ccccCCCCcCCCcccEEEcCCccc
Q 001036          768 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDNN-ISGSLPSCFYPLSIKQVHLSKNML  845 (1180)
Q Consensus       768 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~~L~~L~l~~n~~  845 (1180)
                      ++++|++++..+..++++++|++|++++|++++..+ ..+..+++|++|++++|+ +.+                     
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~---------------------  164 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK---------------------  164 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE---------------------
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc---------------------
Confidence            888888875555557778888888888887775443 467777777777777774 332                     


Q ss_pred             ccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCC
Q 001036          846 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC  925 (1180)
Q Consensus       846 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  925 (1180)
                         ++...|.++++|+.|++++|.+++..|..++.+++|++|++++|++....+..+..+++|++|++++|++++..+..
T Consensus       165 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  241 (353)
T 2z80_A          165 ---IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE  241 (353)
T ss_dssp             ---ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred             ---cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence               22225666777777777777777777777777777777777777775333333445677777777777766554433


Q ss_pred             ccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccC
Q 001036          926 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN 1005 (1180)
Q Consensus       926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~ 1005 (1180)
                      +...                                                                          ..
T Consensus       242 l~~~--------------------------------------------------------------------------~~  247 (353)
T 2z80_A          242 LSTG--------------------------------------------------------------------------ET  247 (353)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             cccc--------------------------------------------------------------------------cc
Confidence            2210                                                                          11


Q ss_pred             CCCCCEEeCccccccc----cccccccCCCCCCEEECcCCcCcccCCcc-ccCCCCCCEEEcCCCcCcccCC
Q 001036         1006 LTRIQTLNLSHNNLTG----TIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus      1006 l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
                      ...++.++|++|.+++    .+|..++++++|+.||+++|+++ .+|.. |..+++|++|++++|+++|.+|
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            2233344444444433    45666777777777777777777 45544 4677777777777777777666

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.4e-27  Score=266.66  Aligned_cols=232  Identities=23%  Similarity=0.296  Sum_probs=150.8

Q ss_pred             CCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCC--CCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEc
Q 001036          763 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP--IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL  840 (1180)
Q Consensus       763 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l  840 (1180)
                      +|++|++++|+++...+..+.++++|++|++++|.++..  .|..+..+++|++|++++|.+.                 
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-----------------   91 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-----------------   91 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-----------------
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-----------------
Confidence            444555555554422222344455555555555544311  2334444555555555555543                 


Q ss_pred             CCcccccccCcccccCCCCCcEEECcCccCccccc-hhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCc
Q 001036          841 SKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH  919 (1180)
Q Consensus       841 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  919 (1180)
                             .+|. .+.++++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++
T Consensus        92 -------~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           92 -------TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             -------EEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             -------cChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence                   2233 45566666777777776665444 45666777777777777777666777777777777777777776


Q ss_pred             c-cCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCC
Q 001036          920 G-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH  998 (1180)
Q Consensus       920 ~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  998 (1180)
                      + .+|..+..++                                                     .|+.|||++|++++.
T Consensus       164 ~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~n~l~~~  190 (306)
T 2z66_A          164 ENFLPDIFTELR-----------------------------------------------------NLTFLDLSQCQLEQL  190 (306)
T ss_dssp             GGEECSCCTTCT-----------------------------------------------------TCCEEECTTSCCCEE
T ss_pred             cccchhHHhhCc-----------------------------------------------------CCCEEECCCCCcCCc
Confidence            5 4555554432                                                     677777777777777


Q ss_pred             CCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCC-CCCEEEcCCCcCcccCC
Q 001036          999 IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN-TLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus       999 ~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-~L~~l~ls~N~l~g~ip 1072 (1180)
                      .|..|.++++|++|+|++|++++..+..|..+++|+.|||++|++++.+|..+..++ .|++|++++|++++..+
T Consensus       191 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            777778888888888888888877777788888888888888888888888888774 78888888888877543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.4e-28  Score=276.47  Aligned_cols=279  Identities=19%  Similarity=0.229  Sum_probs=162.7

Q ss_pred             CCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEE
Q 001036          713 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV  792 (1180)
Q Consensus       713 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  792 (1180)
                      |+.....+.+++.++. +|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..++++++|++|+
T Consensus        30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            3444445666666553 333322  3555555555555554444555555555555555555544444455555555555


Q ss_pred             ccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCcc
Q 001036          793 MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG  872 (1180)
Q Consensus       793 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  872 (1180)
                      +++|++++..+..+.++++                                                |++|++++|++++
T Consensus       107 Ls~n~l~~~~~~~~~~l~~------------------------------------------------L~~L~L~~n~l~~  138 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSS------------------------------------------------LTFLNLLGNPYKT  138 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTT------------------------------------------------CSEEECTTCCCSS
T ss_pred             CCCCcCCcCCHhHhCCCcc------------------------------------------------CCEEECCCCCCcc
Confidence            5555554333333444444                                                4444444444443


Q ss_pred             ccc-hhhhcCCCCCEEecCCC-ccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccc
Q 001036          873 SIP-DWIDGLSQLSHLNLAHN-NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFS  950 (1180)
Q Consensus       873 ~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  950 (1180)
                      ..+ ..|.++++|++|++++| .+.+..|..+.++++|++|++++|++++..|..|++++                    
T Consensus       139 l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~--------------------  198 (353)
T 2z80_A          139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ--------------------  198 (353)
T ss_dssp             SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS--------------------
T ss_pred             cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc--------------------
Confidence            222 24444555555555554 24433344555555555555555555555554444322                    


Q ss_pred             cCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcccccccccccccc--
Q 001036          951 ISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS-- 1028 (1180)
Q Consensus       951 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-- 1028 (1180)
                                                       +|+.|++++|+++...+..+..+++|+.|++++|++++..+..+.  
T Consensus       199 ---------------------------------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  245 (353)
T 2z80_A          199 ---------------------------------NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG  245 (353)
T ss_dssp             ---------------------------------EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred             ---------------------------------cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc
Confidence                                             455555555555432222234456666666666666665554433  


Q ss_pred             -CCCCCCEEECcCCcCcc----cCCccccCCCCCCEEEcCCCcCcccCCCc-ccccccCCccccCCCCCCCCCC
Q 001036         1029 -NLRHIESLDLSYNKLSG----KIPRQLVDLNTLAIFIVAYNNLSGKIPEW-TAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus      1029 -~l~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
                       ....++.++|++|.+++    .+|..+..+++|+.|++++|+++ .+|.. +..+..+...++.+||+.|.|+
T Consensus       246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence             35778999999999987    58889999999999999999999 56654 4778889999999999999986

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=8.2e-28  Score=268.52  Aligned_cols=259  Identities=22%  Similarity=0.253  Sum_probs=158.4

Q ss_pred             CceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCC--CCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEc
Q 001036          740 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG--KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI  817 (1180)
Q Consensus       740 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  817 (1180)
                      |++|++++|.++...+..|.++++|++|++++|.++.  ..|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus        30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l  108 (306)
T 2z66_A           30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF  108 (306)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEEC
T ss_pred             CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEEC
Confidence            3444444444433222334444444455554444441  12344445555555555555554 34445556666666666


Q ss_pred             cCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCcccc-
Q 001036          818 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-  896 (1180)
Q Consensus       818 ~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-  896 (1180)
                      ++|++++..+                       ...+..+++|+.|++++|.+++..|..|.++++|++|++++|.+.+ 
T Consensus       109 ~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A          109 QHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             TTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            6666653211                       0145566667777777777766666667777777777777777765 


Q ss_pred             CCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhc
Q 001036          897 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA  976 (1180)
Q Consensus       897 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  976 (1180)
                      .+|..+..+++|++|++++|++++..|..|..++                                              
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------------------------------------  199 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS----------------------------------------------  199 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT----------------------------------------------
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC----------------------------------------------
Confidence            4666777777777777777777776666655433                                              


Q ss_pred             ccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCC-CCCCEEECcCCcCcccCCc--cccC
Q 001036          977 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL-RHIESLDLSYNKLSGKIPR--QLVD 1053 (1180)
Q Consensus       977 ~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l-~~L~~L~Ls~N~l~g~ip~--~l~~ 1053 (1180)
                             .|+.|+|++|++++..+..+..+++|++|+|++|++++..|..+..+ ++|+.|+|++|++++..+.  ....
T Consensus       200 -------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~  272 (306)
T 2z66_A          200 -------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW  272 (306)
T ss_dssp             -------TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred             -------CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence                   57777777777776666677777888888888888888788777777 4788888888888765331  1122


Q ss_pred             CCCCCEEEcCCCcCcccCCCcc
Q 001036         1054 LNTLAIFIVAYNNLSGKIPEWT 1075 (1180)
Q Consensus      1054 l~~L~~l~ls~N~l~g~ip~~~ 1075 (1180)
                      +...+.+.+..+++.+..|...
T Consensus       273 l~~~~~~~~~~~~~~C~~p~~~  294 (306)
T 2z66_A          273 IKDQRQLLVEVERMECATPSDK  294 (306)
T ss_dssp             HHHTGGGBSCGGGCBEEESGGG
T ss_pred             HHhhhhhhccccccccCCchhh
Confidence            3334445566677777777643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.7e-26  Score=271.74  Aligned_cols=252  Identities=22%  Similarity=0.261  Sum_probs=198.3

Q ss_pred             cCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEcc
Q 001036          739 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS  818 (1180)
Q Consensus       739 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  818 (1180)
                      ..+.++..++.++ .+|..+.  ++++.|++++|++.+..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4566777777776 4555443  577788888888776666777777888888888887777667777777777777777


Q ss_pred             CCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCc-cccC
Q 001036          819 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN-LEGE  897 (1180)
Q Consensus       819 ~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~  897 (1180)
                      +|++++                        ++...|.++++|+.|+|++|.+++..+..|.++++|++|++++|+ +...
T Consensus       121 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i  176 (440)
T 3zyj_A          121 DNRLTT------------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI  176 (440)
T ss_dssp             SSCCSS------------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCe------------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee
Confidence            777762                        333367888899999999999988777888999999999999854 4444


Q ss_pred             CCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcc
Q 001036          898 VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY  977 (1180)
Q Consensus       898 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  977 (1180)
                      .+..|.++++|++|+|++|+++.. |. +..                                                 
T Consensus       177 ~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~-------------------------------------------------  205 (440)
T 3zyj_A          177 SEGAFEGLSNLRYLNLAMCNLREI-PN-LTP-------------------------------------------------  205 (440)
T ss_dssp             CTTTTTTCSSCCEEECTTSCCSSC-CC-CTT-------------------------------------------------
T ss_pred             CcchhhcccccCeecCCCCcCccc-cc-cCC-------------------------------------------------
Confidence            445788899999999999988743 31 222                                                 


Q ss_pred             cchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCC
Q 001036          978 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 1057 (1180)
Q Consensus       978 ~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 1057 (1180)
                          +++|+.|||++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..++.|
T Consensus       206 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          206 ----LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             ----CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ----CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence                3378889999999998888889999999999999999998888889999999999999999998777888888999


Q ss_pred             CEEEcCCCcCcccCC
Q 001036         1058 AIFIVAYNNLSGKIP 1072 (1180)
Q Consensus      1058 ~~l~ls~N~l~g~ip 1072 (1180)
                      +.|++++|++.+...
T Consensus       282 ~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          282 ERIHLHHNPWNCNCD  296 (440)
T ss_dssp             CEEECCSSCEECSST
T ss_pred             CEEEcCCCCccCCCC
Confidence            999999998876554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.9e-26  Score=272.31  Aligned_cols=252  Identities=21%  Similarity=0.220  Sum_probs=208.3

Q ss_pred             cCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEcc
Q 001036          739 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS  818 (1180)
Q Consensus       739 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  818 (1180)
                      ..+.++.+++.++ .+|..+.  +++++|++++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3456777777776 4555443  578888888888887777888888888888888888887777888888888888888


Q ss_pred             CCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCC-ccccC
Q 001036          819 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN-NLEGE  897 (1180)
Q Consensus       819 ~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~  897 (1180)
                      +|++++                        +|...|.++++|++|+|++|++++..+..|.++++|++|++++| .+...
T Consensus       132 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i  187 (452)
T 3zyi_A          132 DNWLTV------------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI  187 (452)
T ss_dssp             SSCCSB------------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCc------------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc
Confidence            887763                        33336888999999999999999887888999999999999995 45444


Q ss_pred             CCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcc
Q 001036          898 VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY  977 (1180)
Q Consensus       898 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  977 (1180)
                      .+..|.++++|++|+|++|++++. |. +..                                                 
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~-------------------------------------------------  216 (452)
T 3zyi_A          188 SEGAFEGLFNLKYLNLGMCNIKDM-PN-LTP-------------------------------------------------  216 (452)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSSC-CC-CTT-------------------------------------------------
T ss_pred             ChhhccCCCCCCEEECCCCccccc-cc-ccc-------------------------------------------------
Confidence            455788999999999999999864 21 222                                                 


Q ss_pred             cchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCC
Q 001036          978 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 1057 (1180)
Q Consensus       978 ~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 1057 (1180)
                          +++|+.|||++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..+++|
T Consensus       217 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          217 ----LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             ----CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             ----cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence                3478999999999999889999999999999999999999999999999999999999999998888888999999


Q ss_pred             CEEEcCCCcCcccCC
Q 001036         1058 AIFIVAYNNLSGKIP 1072 (1180)
Q Consensus      1058 ~~l~ls~N~l~g~ip 1072 (1180)
                      +.|++++|++.+...
T Consensus       293 ~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          293 VELHLHHNPWNCDCD  307 (452)
T ss_dssp             CEEECCSSCEECSTT
T ss_pred             CEEEccCCCcCCCCC
Confidence            999999999887655

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=6.3e-27  Score=262.55  Aligned_cols=234  Identities=21%  Similarity=0.310  Sum_probs=159.0

Q ss_pred             CccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEE
Q 001036          737 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILD  816 (1180)
Q Consensus       737 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  816 (1180)
                      .+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            578899999999998 67878888999999999999998 88888999999999999999988 7788899999999999


Q ss_pred             ccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCcccc
Q 001036          817 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG  896 (1180)
Q Consensus       817 l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  896 (1180)
                      +++|++.+.+|..+..     .         .++. .|.++++|+.|++++|+++ .+|..++.+++|++|++++|++++
T Consensus       157 L~~n~~~~~~p~~~~~-----~---------~~~~-~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          157 IRACPELTELPEPLAS-----T---------DASG-EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             EEEETTCCCCCSCSEE-----E---------C-CC-CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             CCCCCCccccChhHhh-----c---------cchh-hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence            9998888777764321     0         0111 3455566666666666665 455555555555555555555553


Q ss_pred             CCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhc
Q 001036          897 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA  976 (1180)
Q Consensus       897 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  976 (1180)
                       +|..+..+++|++                                                                  
T Consensus       221 -l~~~l~~l~~L~~------------------------------------------------------------------  233 (328)
T 4fcg_A          221 -LGPAIHHLPKLEE------------------------------------------------------------------  233 (328)
T ss_dssp             -CCGGGGGCTTCCE------------------------------------------------------------------
T ss_pred             -CchhhccCCCCCE------------------------------------------------------------------
Confidence             3334555555554                                                                  


Q ss_pred             ccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCC
Q 001036          977 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT 1056 (1180)
Q Consensus       977 ~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~ 1056 (1180)
                                 |+|++|++.+.+|..++++++|++|+|++|++.+.+|..++++++|+.|||++|++.|.+|..+.+++.
T Consensus       234 -----------L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          234 -----------LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             -----------EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             -----------EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence                       445555555555555555556666666666666666666666666666666666666666666666666


Q ss_pred             CCEEEcCCCcC
Q 001036         1057 LAIFIVAYNNL 1067 (1180)
Q Consensus      1057 L~~l~ls~N~l 1067 (1180)
                      |+.++++.|.+
T Consensus       303 L~~l~l~~~~~  313 (328)
T 4fcg_A          303 NCIILVPPHLQ  313 (328)
T ss_dssp             TCEEECCGGGS
T ss_pred             ceEEeCCHHHH
Confidence            66666655543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=9.3e-27  Score=261.19  Aligned_cols=188  Identities=20%  Similarity=0.248  Sum_probs=165.6

Q ss_pred             cCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeE
Q 001036          712 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI  791 (1180)
Q Consensus       712 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  791 (1180)
                      ..++++.|++++|.++ .+|..++.+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..++++++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            3588999999999998 67888999999999999999999 88999999999999999999999 889999999999999


Q ss_pred             EccCCcCCCCCCccccC---------CCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcE
Q 001036          792 VMPKNHLEGPIPVEFCR---------LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT  862 (1180)
Q Consensus       792 ~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  862 (1180)
                      ++++|++.+.+|..+..         +++|++|++++|+++                        .+|. .+.++++|+.
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~lp~-~l~~l~~L~~  210 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------------------SLPA-SIANLQNLKS  210 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------------------------CCCG-GGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC------------------------cchH-hhcCCCCCCE
Confidence            99999999999987764         788888888888776                        3444 6888999999


Q ss_pred             EECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036          863 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN  928 (1180)
Q Consensus       863 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  928 (1180)
                      |++++|++++ +|..++.+++|++|++++|++.+.+|..+..+++|++|+|++|++.+.+|..+++
T Consensus       211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~  275 (328)
T 4fcg_A          211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR  275 (328)
T ss_dssp             EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred             EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence            9999999995 6667999999999999999999999998888888888888887777666655543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=7.3e-26  Score=267.26  Aligned_cols=251  Identities=24%  Similarity=0.235  Sum_probs=218.8

Q ss_pred             CCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEcc
Q 001036          715 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP  794 (1180)
Q Consensus       715 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  794 (1180)
                      ....++.++..++. +|..+.  +++++|+|++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            46788888888874 555443  689999999999999999999999999999999999998888899999999999999


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCc-cCccc
Q 001036          795 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN-YLNGS  873 (1180)
Q Consensus       795 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~  873 (1180)
                      +|++++..+..|..+++|++|++++|++.+                        +|...|.++++|+.|++++| .+...
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i  187 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYI  187 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCcccc
Confidence            999998888889999999999999998873                        33347889999999999994 55555


Q ss_pred             cchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCC
Q 001036          874 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG  953 (1180)
Q Consensus       874 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  953 (1180)
                      .+..|.++++|++|++++|++++. | .+..+++|+.|+|++|++++..|..|.+++                       
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------------------  242 (452)
T 3zyi_A          188 SEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS-----------------------  242 (452)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCT-----------------------
T ss_pred             ChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCcc-----------------------
Confidence            556799999999999999999854 4 588899999999999999998888776644                       


Q ss_pred             CCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCC
Q 001036          954 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 1033 (1180)
Q Consensus       954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L 1033 (1180)
                                                    .|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|
T Consensus       243 ------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          243 ------------------------------SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             ------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             ------------------------------CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence                                          79999999999999999999999999999999999998888889999999


Q ss_pred             CEEECcCCcCcccC
Q 001036         1034 ESLDLSYNKLSGKI 1047 (1180)
Q Consensus      1034 ~~L~Ls~N~l~g~i 1047 (1180)
                      +.|+|++|.+.+.-
T Consensus       293 ~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          293 VELHLHHNPWNCDC  306 (452)
T ss_dssp             CEEECCSSCEECST
T ss_pred             CEEEccCCCcCCCC
Confidence            99999999987543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.3e-26  Score=253.67  Aligned_cols=167  Identities=28%  Similarity=0.281  Sum_probs=91.9

Q ss_pred             cccCCCCCcEEECcCcc-CccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccc
Q 001036          853 TFFNCSSLVTLDLSYNY-LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL  931 (1180)
Q Consensus       853 ~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  931 (1180)
                      .|.++++|++|++++|. ++...|..|..+++|++|++++|++++..|..+..+++|++|++++|++++..+..|+.++ 
T Consensus        75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-  153 (285)
T 1ozn_A           75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-  153 (285)
T ss_dssp             TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-
T ss_pred             hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-
Confidence            34444555555555554 4444445555555555555555555554455555555555555555555544444343322 


Q ss_pred             ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCE
Q 001036          932 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 1011 (1180)
Q Consensus       932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~ 1011 (1180)
                                                                          +|+.|+|++|++++..+..|.++++|+.
T Consensus       154 ----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~  181 (285)
T 1ozn_A          154 ----------------------------------------------------NLTHLFLHGNRISSVPERAFRGLHSLDR  181 (285)
T ss_dssp             ----------------------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             ----------------------------------------------------CccEEECCCCcccccCHHHhcCccccCE
Confidence                                                                4555555555555444445555666666


Q ss_pred             EeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCC
Q 001036         1012 LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus      1012 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
                      |+|++|++++..|..|+++++|+.|++++|++++..|..+..++.|+.|++++|++.+..+
T Consensus       182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            6666666666556666666666666666666665554556666666666666666655444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2e-26  Score=254.11  Aligned_cols=252  Identities=23%  Similarity=0.235  Sum_probs=172.2

Q ss_pred             eeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCc
Q 001036          742 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN  821 (1180)
Q Consensus       742 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  821 (1180)
                      +++.+++.++. +|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus        15 ~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           15 TTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             EEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            44444444442 23222  2455666666666654444555666666666666666665556666666666666666665


Q ss_pred             -ccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCc
Q 001036          822 -ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI  900 (1180)
Q Consensus       822 -l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  900 (1180)
                       +.+                        ++...|.++++|++|++++|.+++..|..|.++++|++|++++|++++..+.
T Consensus        92 ~l~~------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  147 (285)
T 1ozn_A           92 QLRS------------------------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD  147 (285)
T ss_dssp             TCCC------------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             Cccc------------------------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence             432                        2222566777777777877777777777777788888888888888776666


Q ss_pred             cccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccch
Q 001036          901 QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR  980 (1180)
Q Consensus       901 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  980 (1180)
                      .+..+++|++|++++|++++..+..|..++                                                  
T Consensus       148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------------------------------  177 (285)
T 1ozn_A          148 TFRDLGNLTHLFLHGNRISSVPERAFRGLH--------------------------------------------------  177 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCT--------------------------------------------------
T ss_pred             HhccCCCccEEECCCCcccccCHHHhcCcc--------------------------------------------------
Confidence            777888888888888888776665565433                                                  


Q ss_pred             hccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEE
Q 001036          981 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 1060 (1180)
Q Consensus       981 ~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l 1060 (1180)
                         .|+.|++++|++++..|..|+++++|+.|++++|++++..|..|..+++|+.|++++|++++..+.. .-...++.+
T Consensus       178 ---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~  253 (285)
T 1ozn_A          178 ---SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKF  253 (285)
T ss_dssp             ---TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHC
T ss_pred             ---ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhc
Confidence               6888888888888888888888888999999999998877778888899999999999888765532 111223444


Q ss_pred             EcCCCcCcccCCCc
Q 001036         1061 IVAYNNLSGKIPEW 1074 (1180)
Q Consensus      1061 ~ls~N~l~g~ip~~ 1074 (1180)
                      ..+.|.+.+..|+.
T Consensus       254 ~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          254 RGSSSEVPCSLPQR  267 (285)
T ss_dssp             CSEECCCBEEESGG
T ss_pred             ccccCccccCCchH
Confidence            56677777777763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=264.71  Aligned_cols=250  Identities=28%  Similarity=0.275  Sum_probs=214.6

Q ss_pred             CCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEcc
Q 001036          715 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP  794 (1180)
Q Consensus       715 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  794 (1180)
                      ....++.+++.++ .+|..+.  ++++.|+|++|++.+..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4678888888887 4555543  689999999999998888899999999999999999987777889999999999999


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCc-cCccc
Q 001036          795 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN-YLNGS  873 (1180)
Q Consensus       795 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~  873 (1180)
                      +|++++..+..|..+++|++|++++|++.+                        ++...|.++++|+.|++++| .++..
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i  176 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIES------------------------IPSYAFNRIPSLRRLDLGELKRLSYI  176 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccc------------------------cCHHHhhhCcccCEeCCCCCCCccee
Confidence            999997777789999999999999998873                        33337888999999999985 45545


Q ss_pred             cchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCC
Q 001036          874 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG  953 (1180)
Q Consensus       874 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  953 (1180)
                      .+..|.++++|++|++++|+++ .+| .+..+++|+.|+|++|++++..|..|.+++                       
T Consensus       177 ~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------------------  231 (440)
T 3zyj_A          177 SEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM-----------------------  231 (440)
T ss_dssp             CTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT-----------------------
T ss_pred             CcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCc-----------------------
Confidence            5567899999999999999998 455 478899999999999999998888876644                       


Q ss_pred             CCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCC
Q 001036          954 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 1033 (1180)
Q Consensus       954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L 1033 (1180)
                                                    .|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|
T Consensus       232 ------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          232 ------------------------------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             ------------------------------TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ------------------------------cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence                                          78999999999999889999999999999999999998888889999999


Q ss_pred             CEEECcCCcCccc
Q 001036         1034 ESLDLSYNKLSGK 1046 (1180)
Q Consensus      1034 ~~L~Ls~N~l~g~ 1046 (1180)
                      +.|+|++|.+.+.
T Consensus       282 ~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          282 ERIHLHHNPWNCN  294 (440)
T ss_dssp             CEEECCSSCEECS
T ss_pred             CEEEcCCCCccCC
Confidence            9999999998754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4.3e-28  Score=270.79  Aligned_cols=254  Identities=23%  Similarity=0.294  Sum_probs=151.5

Q ss_pred             cCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcC-CCCCccccc-------CCCCCCeEEccCCcCCCCCCccc
Q 001036          735 FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL-SGKIPRWLG-------NLKGLQHIVMPKNHLEGPIPVEF  806 (1180)
Q Consensus       735 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l-~~~~p~~~~-------~l~~L~~L~l~~n~l~~~~~~~~  806 (1180)
                      +..++|++|++++|.+  .+|..+...  |+.|++++|.+ .+.+|..+.       ++++|++|++++|++++.+|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3445555555555555  444433332  55555555555 233444443       56666666666666666666654


Q ss_pred             --cCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCC
Q 001036          807 --CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL  884 (1180)
Q Consensus       807 --~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L  884 (1180)
                        ..+++|++|++++|++++. |..+.                .++   ...+++|++|++++|++++..|..|+++++|
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~----------------~l~---~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLA----------------ELQ---QWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHH----------------HHH---TTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHH----------------HHH---HhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence              5666666666666666644 32110                000   0012566666666666666666666666666


Q ss_pred             CEEecCCCccccC--CCccc--cCCCCCCEEECcCCcCcccC--CCCccCcccccccCCCCCCCCCCccccccCCCCCch
Q 001036          885 SHLNLAHNNLEGE--VPIQL--CRLNQLQLLDLSDNNLHGLI--PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV  958 (1180)
Q Consensus       885 ~~L~L~~N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  958 (1180)
                      ++|++++|++.+.  .|..+  ..+++|++|+|++|++++..  +..+                                
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--------------------------------  223 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL--------------------------------  223 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH--------------------------------
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH--------------------------------
Confidence            6666666666544  22333  56677777777777665321  0000                                


Q ss_pred             hhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCC-ccccCCCCCCEEeCccccccccccccccCCCCCCEEE
Q 001036          959 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP-PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037 (1180)
Q Consensus       959 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ 1037 (1180)
                                          ...++.|+.|||++|++++.+| ..+..+++|++|+|++|+|+ .+|..+.  ++|+.||
T Consensus       224 --------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~  280 (312)
T 1wwl_A          224 --------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLD  280 (312)
T ss_dssp             --------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEE
T ss_pred             --------------------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEE
Confidence                                0113467777777777777664 44566777777777777777 6676665  6777777


Q ss_pred             CcCCcCcccCCccccCCCCCCEEEcCCCcCcc
Q 001036         1038 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus      1038 Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
                      |++|+|++. |. +..++.|++|++++|++++
T Consensus       281 Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          281 LSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            777777755 55 7777777777777777765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=3.6e-27  Score=263.28  Aligned_cols=209  Identities=24%  Similarity=0.260  Sum_probs=125.0

Q ss_pred             ccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCccc-cccccccc-------CCccCceeeccCCcccccCCC
Q 001036          685 FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK-GHIFSRIF-------SLRNLRWLLLEGNHFVGEIPQ  756 (1180)
Q Consensus       685 ~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p~  756 (1180)
                      +++.++|+.|++++|.+  .+|..+...   |+.|++++|.++ ..+|..+.       ++++|++|++++|.+++.+|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            34455566666666666  556555432   556666666662 33444443       567777777777777777777


Q ss_pred             cC--CCCCCCcEEECcCCcCCCCCcccccCC-----CCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC
Q 001036          757 SL--SKCSSLKGLYLNNNNLSGKIPRWLGNL-----KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC  829 (1180)
Q Consensus       757 ~~--~~l~~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~  829 (1180)
                      .+  ..+++|++|++++|++++. |..++.+     ++|++|++++|++.+..|..|..+++|++|++++|++.+.++  
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--  190 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--  190 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--
Confidence            65  7777888888888888765 6666665     777777777777776666777777777777777776654311  


Q ss_pred             cCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCcc---ccchhhhcCCCCCEEecCCCccccCCC-ccccCC
Q 001036          830 FYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG---SIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRL  905 (1180)
Q Consensus       830 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l  905 (1180)
                                        .++...+.++++|++|++++|++++   .....+.++++|++|++++|++++.+| ..+..+
T Consensus       191 ------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          191 ------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             ------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             ------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence                              0111123566677777777776662   112333455566666666665555443 233334


Q ss_pred             CCCCEEECcCCcCc
Q 001036          906 NQLQLLDLSDNNLH  919 (1180)
Q Consensus       906 ~~L~~L~Ls~N~l~  919 (1180)
                      ++|++|+|++|+++
T Consensus       253 ~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK  266 (312)
T ss_dssp             TTCCEEECTTSCCS
T ss_pred             CCCCEEECCCCccC
Confidence            44444444444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=3.5e-28  Score=299.20  Aligned_cols=332  Identities=12%  Similarity=0.046  Sum_probs=168.8

Q ss_pred             CcccCcEEEccCcccccccCh---hhhhcCCCCCEEEccCCccc----ccccccccCCccCceeeccCCcccccCCCcCC
Q 001036          687 NVIFLQFLDLSNNKLTGEIPD---HLAMCCVNLEFLSLSNNSLK----GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS  759 (1180)
Q Consensus       687 ~l~~L~~L~l~~n~l~~~ip~---~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~  759 (1180)
                      ++++|++|++++|.+++.-..   .+...+++|++|++++|.++    +.++..+.++++|++|++++|.+.+ +|..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            344455555555544322111   12233445555555555444    1222233344455555555554443 334444


Q ss_pred             CCCCCcEEECcCCcCC---CCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC--cCCCc
Q 001036          760 KCSSLKGLYLNNNNLS---GKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC--FYPLS  834 (1180)
Q Consensus       760 ~l~~L~~L~l~~n~l~---~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~~~  834 (1180)
                      ++++|+.|+++++...   +..+..+..+++|+.++++++. .+.+|..+..+++|++|++++|.+++.....  ...++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence            4455555555432211   1222334444555555554432 2234444444555555555555543222111  12234


Q ss_pred             ccEEEcCCcccccccCcccccCCCCCcEEECc-----------CccCccc-cchhhhcCCCCCEEecCCCccccCCCccc
Q 001036          835 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS-----------YNYLNGS-IPDWIDGLSQLSHLNLAHNNLEGEVPIQL  902 (1180)
Q Consensus       835 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~-----------~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  902 (1180)
                      |+.|+++++...+.++. .+.++++|+.|+++           .|.+++. ++....++++|++|+++.|.+++..+..+
T Consensus       320 L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l  398 (592)
T 3ogk_B          320 LEVLETRNVIGDRGLEV-LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI  398 (592)
T ss_dssp             CCEEEEEGGGHHHHHHH-HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred             CCEEeccCccCHHHHHH-HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence            55555542222222222 34556777777777           3455543 23334557777777777777776666665


Q ss_pred             cC-CCCCCEEECc----CCcCcccCCC-CccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhc
Q 001036          903 CR-LNQLQLLDLS----DNNLHGLIPS-CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA  976 (1180)
Q Consensus       903 ~~-l~~L~~L~Ls----~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  976 (1180)
                      .. +++|+.|+++    .|.+++.+.+ .+..                                                
T Consensus       399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~------------------------------------------------  430 (592)
T 3ogk_B          399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRS------------------------------------------------  430 (592)
T ss_dssp             HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH------------------------------------------------
T ss_pred             HhhCCCCcEEEEeecCCCccccCchHHHHHHH------------------------------------------------
Confidence            54 7777777775    4455432110 0000                                                


Q ss_pred             ccchhccccceEEccCC--cccCCCCcccc-CCCCCCEEeCccccccc-cccccccCCCCCCEEECcCCcCccc-CCccc
Q 001036          977 YQGRVLSLLAGLDLSCN--KLVGHIPPQIG-NLTRIQTLNLSHNNLTG-TIPLTFSNLRHIESLDLSYNKLSGK-IPRQL 1051 (1180)
Q Consensus       977 ~~~~~l~~L~~LdLs~N--~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~-ip~~l 1051 (1180)
                       ....+++|+.|++++|  .+++..+..++ .+++|+.|+|++|++++ .+|..+..+++|+.|++++|++++. ++...
T Consensus       431 -~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  509 (592)
T 3ogk_B          431 -LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV  509 (592)
T ss_dssp             -HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred             -HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence             0012446777777643  35555444443 36778888888887776 3455566777788888888877655 33444


Q ss_pred             cCCCCCCEEEcCCCcCccc
Q 001036         1052 VDLNTLAIFIVAYNNLSGK 1070 (1180)
Q Consensus      1052 ~~l~~L~~l~ls~N~l~g~ 1070 (1180)
                      ..+++|++|++++|++++.
T Consensus       510 ~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          510 TKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHCSSCCEEEEESCBCCTT
T ss_pred             HhcCccCeeECcCCcCCHH
Confidence            5677788888888877654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1e-27  Score=268.40  Aligned_cols=267  Identities=21%  Similarity=0.208  Sum_probs=182.6

Q ss_pred             CCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccC
Q 001036          716 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK  795 (1180)
Q Consensus       716 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  795 (1180)
                      ++..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            3344555555554444444455566666666666655555555555556666666555553332  45555555555555


Q ss_pred             CcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccc
Q 001036          796 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP  875 (1180)
Q Consensus       796 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  875 (1180)
                      |++++..     ..++|++|++++|++                       .+..+.    .+++|+.|++++|++++..|
T Consensus        90 n~l~~l~-----~~~~L~~L~l~~n~l-----------------------~~~~~~----~~~~L~~L~l~~N~l~~~~~  137 (317)
T 3o53_A           90 NYVQELL-----VGPSIETLHAANNNI-----------------------SRVSCS----RGQGKKNIYLANNKITMLRD  137 (317)
T ss_dssp             SEEEEEE-----ECTTCCEEECCSSCC-----------------------SEEEEC----CCSSCEEEECCSSCCCSGGG
T ss_pred             Ccccccc-----CCCCcCEEECCCCcc-----------------------CCcCcc----ccCCCCEEECCCCCCCCccc
Confidence            5544221     124444444444444                       433222    35678889999999988878


Q ss_pred             hhhhcCCCCCEEecCCCccccCCCcccc-CCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCC
Q 001036          876 DWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP  954 (1180)
Q Consensus       876 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  954 (1180)
                      ..++.+++|++|++++|.+++..|..+. .+++|++|+|++|++++..+..+                            
T Consensus       138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------------------------  189 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV----------------------------  189 (317)
T ss_dssp             BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC----------------------------
T ss_pred             hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc----------------------------
Confidence            8888888999999999998887777764 68889999999998876522111                            


Q ss_pred             CCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCC
Q 001036          955 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 1034 (1180)
Q Consensus       955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~ 1034 (1180)
                                                 ++.|+.|||++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+
T Consensus       190 ---------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~  240 (317)
T 3o53_A          190 ---------------------------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE  240 (317)
T ss_dssp             ---------------------------CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred             ---------------------------cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence                                       3368889999999985 4555888899999999999998 5788888889999


Q ss_pred             EEECcCCcCc-ccCCccccCCCCCCEEEcCC-CcCcccCCC
Q 001036         1035 SLDLSYNKLS-GKIPRQLVDLNTLAIFIVAY-NNLSGKIPE 1073 (1180)
Q Consensus      1035 ~L~Ls~N~l~-g~ip~~l~~l~~L~~l~ls~-N~l~g~ip~ 1073 (1180)
                      .|++++|+++ +.+|..+..++.|+.++++. +.++|..|.
T Consensus       241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             EEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            9999999998 77888888888888888884 467766554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=4.1e-28  Score=298.65  Aligned_cols=397  Identities=12%  Similarity=0.065  Sum_probs=269.9

Q ss_pred             hcCCcccEEEccCCcccCCCCCCCCC-C-CCccEEEccCCc-ccccCChhhhhcCCCCcEEEccCCcCCcc----CCccc
Q 001036          613 ENNTKLEFLYLVNDSLAGPFRLPIHS-H-KRLRFLDVSNNN-FQGHIPVEIGDILPSLVYFNISMNALDGS----IPSSF  685 (1180)
Q Consensus       613 ~~~~~L~~L~l~~n~~~~~~~~~~~~-~-~~L~~L~l~~n~-l~~~ip~~~~~~l~~L~~L~ls~n~l~~~----~p~~~  685 (1180)
                      ..+++|+.|++++|.+++.....+.. + .+|++|++++|. ++...-..+...+++|++|++++|.+++.    ++..+
T Consensus       109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            36677777777777665443333332 2 337788887775 22111112223478888888888877655    33345


Q ss_pred             cCcccCcEEEccCccccc----ccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCccc---ccCCCcC
Q 001036          686 GNVIFLQFLDLSNNKLTG----EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV---GEIPQSL  758 (1180)
Q Consensus       686 ~~l~~L~~L~l~~n~l~~----~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~p~~~  758 (1180)
                      .++++|+.|++++|.+++    .++. ++..+++|++|++++|.+.+ ++..+..+++|++|+++++...   +..+..+
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            567788888888888762    2222 23467888888888888775 5577778888888888754322   2344567


Q ss_pred             CCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCC-ccccCCCCCCEEEccCCcccc-cCCCCc-CCCcc
Q 001036          759 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDNNISG-SLPSCF-YPLSI  835 (1180)
Q Consensus       759 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~p~~~-~~~~L  835 (1180)
                      ..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.. .++... ..++|
T Consensus       267 ~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L  344 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL  344 (592)
T ss_dssp             CCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred             hccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence            7788888888887543 4677778888888888888888654333 335678888888888 44432 222211 23578


Q ss_pred             cEEEcCC-----------cccccccCcccccCCCCCcEEECcCccCccccchhhhc-CCCCCEEecC----CCccccC--
Q 001036          836 KQVHLSK-----------NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG-LSQLSHLNLA----HNNLEGE--  897 (1180)
Q Consensus       836 ~~L~l~~-----------n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~----~N~l~~~--  897 (1180)
                      ++|++++           |.+++.-....+.++++|+.|+++.|.+++..+..++. +++|+.|+++    .|.+++.  
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~  424 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL  424 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred             CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence            8888883           45543322213556899999999999999888888876 9999999996    6778764  


Q ss_pred             ---CCccccCCCCCCEEECcCCc--CcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhcccc
Q 001036          898 ---VPIQLCRLNQLQLLDLSDNN--LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKN  972 (1180)
Q Consensus       898 ---~p~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  972 (1180)
                         ++..+.++++|++|++++|.  +++..+..+                                              
T Consensus       425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~----------------------------------------------  458 (592)
T 3ogk_B          425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI----------------------------------------------  458 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH----------------------------------------------
T ss_pred             HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH----------------------------------------------
Confidence               34447789999999998643  443222111                                              


Q ss_pred             chhcccchhccccceEEccCCcccC-CCCccccCCCCCCEEeCcccccccc-ccccccCCCCCCEEECcCCcCcccCCcc
Q 001036          973 IAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNLSHNNLTGT-IPLTFSNLRHIESLDLSYNKLSGKIPRQ 1050 (1180)
Q Consensus       973 ~~~~~~~~~l~~L~~LdLs~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~ip~~ 1050 (1180)
                            ...+++|+.|++++|++++ .++..+.++++|++|+|++|.+++. ++..+..+++|+.|+|++|++++.--..
T Consensus       459 ------~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~  532 (592)
T 3ogk_B          459 ------GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDL  532 (592)
T ss_dssp             ------HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTG
T ss_pred             ------HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHH
Confidence                  1124579999999999986 3455678899999999999999866 4455567999999999999998764444


Q ss_pred             cc-CCCCCCEEEcCCC
Q 001036         1051 LV-DLNTLAIFIVAYN 1065 (1180)
Q Consensus      1051 l~-~l~~L~~l~ls~N 1065 (1180)
                      +. .++.+....+..+
T Consensus       533 l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          533 MQMARPYWNIELIPSR  548 (592)
T ss_dssp             GGGCCTTEEEEEECCC
T ss_pred             HHHhCCCcEEEEecCc
Confidence            43 4566655554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=8.1e-27  Score=276.29  Aligned_cols=233  Identities=21%  Similarity=0.203  Sum_probs=125.5

Q ss_pred             CCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCC
Q 001036          763 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK  842 (1180)
Q Consensus       763 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~  842 (1180)
                      +|+.|++++|.+++..|..|+.+++|++|++++|.+++.+|  +..+++|++|++++|.+++..+.    ++|+.|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence            44444444444444444444455555555555555444333  44555555555555555432111    2333344444


Q ss_pred             cccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCcccc-CCCCCCEEECcCCcCccc
Q 001036          843 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGL  921 (1180)
Q Consensus       843 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~  921 (1180)
                      |.+.+..+.    .+++|+.|++++|.+++..|..|+.+++|+.|+|++|.+++.+|..+. .+++|++|+|++|.+++.
T Consensus       109 N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          109 NNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            433332221    235667777777777766666666777777777777777666666655 566667777666666654


Q ss_pred             CCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCc
Q 001036          922 IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP 1001 (1180)
Q Consensus       922 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~ 1001 (1180)
                      .+..+                                                       ++.|+.|||++|+|++. |+
T Consensus       185 ~~~~~-------------------------------------------------------l~~L~~L~Ls~N~l~~~-~~  208 (487)
T 3oja_A          185 KGQVV-------------------------------------------------------FAKLKTLDLSSNKLAFM-GP  208 (487)
T ss_dssp             ECCCC-------------------------------------------------------CTTCCEEECCSSCCCEE-CG
T ss_pred             ccccc-------------------------------------------------------CCCCCEEECCCCCCCCC-CH
Confidence            22110                                                       22456666666666643 33


Q ss_pred             cccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCc-ccCCccccCCCCCCEEEc
Q 001036         1002 QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS-GKIPRQLVDLNTLAIFIV 1062 (1180)
Q Consensus      1002 ~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~l~l 1062 (1180)
                      .++.+++|+.|+|++|+|++ +|..++.+++|+.|++++|.++ +.+|..+..++.|..+++
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            35556666666666666663 4555555666666666666655 445555555544444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=8.2e-25  Score=263.50  Aligned_cols=67  Identities=25%  Similarity=0.350  Sum_probs=42.6

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 1055 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 1055 (1180)
                      +|+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..|+++++|+.|+|++|++++.+|..+..++
T Consensus       242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            4666666666666 3444   4556666666666666 5566666666666666666666666666655443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=4.9e-27  Score=262.88  Aligned_cols=270  Identities=21%  Similarity=0.214  Sum_probs=226.9

Q ss_pred             cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEEC
Q 001036          690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL  769 (1180)
Q Consensus       690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l  769 (1180)
                      .++..+++.+.+. ..+..++..+++|++|++++|++++..|..+..+++|++|++++|.+++..|  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            4667788888887 6666777778899999999999999888999999999999999999997765  899999999999


Q ss_pred             cCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccccc
Q 001036          770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL  849 (1180)
Q Consensus       770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~  849 (1180)
                      ++|++++ +|    ..++|++|++++|++++..+..   +++|++|++++|++++..|                      
T Consensus        88 s~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~----------------------  137 (317)
T 3o53_A           88 NNNYVQE-LL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRD----------------------  137 (317)
T ss_dssp             CSSEEEE-EE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGG----------------------
T ss_pred             cCCcccc-cc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccc----------------------
Confidence            9999874 22    3489999999999998765443   5778888888888874322                      


Q ss_pred             CcccccCCCCCcEEECcCccCccccchhh-hcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036          850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN  928 (1180)
Q Consensus       850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  928 (1180)
                        ..+..+++|+.|++++|.+++..|..+ ..+++|++|++++|++++. | ....+++|++|+|++|++++..+. +..
T Consensus       138 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~  212 (317)
T 3o53_A          138 --LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQS  212 (317)
T ss_dssp             --BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGG
T ss_pred             --hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhh-hcc
Confidence              267788899999999999998877777 4789999999999999865 3 233589999999999999976543 443


Q ss_pred             cccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCC
Q 001036          929 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTR 1008 (1180)
Q Consensus       929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~ 1008 (1180)
                                                                           ++.|+.|||++|+++ .+|..+..+++
T Consensus       213 -----------------------------------------------------l~~L~~L~L~~N~l~-~l~~~~~~l~~  238 (317)
T 3o53_A          213 -----------------------------------------------------AAGVTWISLRNNKLV-LIEKALRFSQN  238 (317)
T ss_dssp             -----------------------------------------------------GTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred             -----------------------------------------------------cCcccEEECcCCccc-chhhHhhcCCC
Confidence                                                                 347999999999999 57888999999


Q ss_pred             CCEEeCcccccc-ccccccccCCCCCCEEECc-CCcCcccCCccc
Q 001036         1009 IQTLNLSHNNLT-GTIPLTFSNLRHIESLDLS-YNKLSGKIPRQL 1051 (1180)
Q Consensus      1009 L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls-~N~l~g~ip~~l 1051 (1180)
                      |+.|++++|.++ +.+|..++.+++|+.|+++ .+.++|..|...
T Consensus       239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~  283 (317)
T 3o53_A          239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC  283 (317)
T ss_dssp             CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred             CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence            999999999999 8899999999999999999 557787776543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.1e-24  Score=259.94  Aligned_cols=268  Identities=28%  Similarity=0.341  Sum_probs=191.5

Q ss_pred             cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEEC
Q 001036          690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL  769 (1180)
Q Consensus       690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l  769 (1180)
                      .++.|++++|.++ .+|..++   ++|++|++++|.++. +|.   .+++|++|+|++|++++ +|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence            4677777777776 6776553   667777777777763 333   45666777777776663 333   4566666666


Q ss_pred             cCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccccc
Q 001036          770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL  849 (1180)
Q Consensus       770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~  849 (1180)
                      ++|++++ +|.   .+++|+.|++++|++++ +|..   +++|++|++++|++++                        +
T Consensus       109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~------------------------l  156 (622)
T 3g06_A          109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS------------------------L  156 (622)
T ss_dssp             CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC------------------------C
T ss_pred             cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC------------------------c
Confidence            6666653 333   34566666666666653 3322   2555566665555542                        2


Q ss_pred             CcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCc
Q 001036          850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT  929 (1180)
Q Consensus       850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  929 (1180)
                      |.    .+++|+.|++++|.+++ +|   ..+++|+.|++++|++++ +|..   +++|+.|++++|.++.. |..    
T Consensus       157 ~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l-~~~----  219 (622)
T 3g06_A          157 PA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL-PAL----  219 (622)
T ss_dssp             CC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-CCC----
T ss_pred             CC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccccc-CCC----
Confidence            32    23578888888888885 45   456888999999998885 4443   47899999999988743 221    


Q ss_pred             ccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCC
Q 001036          930 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 1009 (1180)
Q Consensus       930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L 1009 (1180)
                                                                          +++|+.|+|++|+|++ +|   ..+++|
T Consensus       220 ----------------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L  243 (622)
T 3g06_A          220 ----------------------------------------------------PSGLKELIVSGNRLTS-LP---VLPSEL  243 (622)
T ss_dssp             ----------------------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTC
T ss_pred             ----------------------------------------------------CCCCCEEEccCCccCc-CC---CCCCcC
Confidence                                                                1268999999999996 66   556889


Q ss_pred             CEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccc
Q 001036         1010 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA 1079 (1180)
Q Consensus      1010 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~ 1079 (1180)
                      +.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|+++|.+|..+..+.
T Consensus       244 ~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          244 KELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            99999999999 5666   6789999999999999 8899999999999999999999999887555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.3e-26  Score=272.44  Aligned_cols=235  Identities=23%  Similarity=0.210  Sum_probs=169.1

Q ss_pred             CCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEcc
Q 001036          715 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP  794 (1180)
Q Consensus       715 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  794 (1180)
                      +|++|++++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++. |    ..++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECc
Confidence            56666666666665555555555666666666665554443  55555555555555555421 1    11445555555


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCcccc
Q 001036          795 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI  874 (1180)
Q Consensus       795 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  874 (1180)
                      +|.++                        +..+..  .++|+.|++++|.+++..|. .|.++++|+.|+|++|.+++..
T Consensus       108 ~N~l~------------------------~~~~~~--l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A          108 NNNIS------------------------RVSCSR--GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             SSCCC------------------------CEEECC--CSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEE
T ss_pred             CCcCC------------------------CCCccc--cCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcC
Confidence            55444                        333322  13455555555555554444 7888999999999999999989


Q ss_pred             chhhh-cCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCC
Q 001036          875 PDWID-GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG  953 (1180)
Q Consensus       875 p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  953 (1180)
                      |..+. .+++|+.|+|++|.+++..+  ...+++|++|+|++|++++.+|. |..                         
T Consensus       161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~-------------------------  212 (487)
T 3oja_A          161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQS-------------------------  212 (487)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGG-------------------------
T ss_pred             hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcC-------------------------
Confidence            98886 79999999999999997633  44699999999999999986654 443                         


Q ss_pred             CCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcccccc-ccccccccCCCC
Q 001036          954 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRH 1032 (1180)
Q Consensus       954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~ 1032 (1180)
                                                  ++.|+.|||++|.|++ +|..++.+++|+.|++++|.++ +.+|..++.++.
T Consensus       213 ----------------------------l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~  263 (487)
T 3oja_A          213 ----------------------------AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR  263 (487)
T ss_dssp             ----------------------------GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred             ----------------------------CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence                                        3379999999999996 7888999999999999999999 888999999999


Q ss_pred             CCEEECcC
Q 001036         1033 IESLDLSY 1040 (1180)
Q Consensus      1033 L~~L~Ls~ 1040 (1180)
                      |+.++++.
T Consensus       264 L~~l~~~~  271 (487)
T 3oja_A          264 VQTVAKQT  271 (487)
T ss_dssp             HHHHHHHH
T ss_pred             CcEEeccc
Confidence            98888863

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=9.4e-24  Score=231.55  Aligned_cols=209  Identities=25%  Similarity=0.308  Sum_probs=121.6

Q ss_pred             CCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECc
Q 001036          787 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS  866 (1180)
Q Consensus       787 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  866 (1180)
                      +|++|++++|.+++..+..|.++++|++|++++|++++.                        +...|.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~L~   84 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------------------------EDGAYQSLSHLSTLILT   84 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE------------------------CTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc------------------------CHHHccCCcCCCEEECC
Confidence            455555555555444444555555555555555555422                        11244555555555555


Q ss_pred             CccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCccc-CCCCccCcccccccCCCCCCCCCC
Q 001036          867 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPF  945 (1180)
Q Consensus       867 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~  945 (1180)
                      +|.+++..|..|.++++|++|++++|++.+..+..+..+++|++|++++|++++. +|..|++++               
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~---------------  149 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT---------------  149 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT---------------
T ss_pred             CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC---------------
Confidence            5555555555555555566666666555555444555556666666666655542 344443322               


Q ss_pred             ccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCC----EEeCccccccc
Q 001036          946 KTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ----TLNLSHNNLTG 1021 (1180)
Q Consensus       946 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~----~L~Ls~N~l~g 1021 (1180)
                                                            +|+.|+|++|++++..+..+..+++|+    .|++++|++++
T Consensus       150 --------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~  191 (276)
T 2z62_A          150 --------------------------------------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (276)
T ss_dssp             --------------------------------------TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred             --------------------------------------CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence                                                  455666666666655555555555555    67777777776


Q ss_pred             cccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036         1022 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus      1022 ~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      ..|..+.. .+|+.|+|++|++++..+..+..+++|+.|++++|++++..|.
T Consensus       192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            55555544 3677777777777766666667777777777777777777764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.9e-23  Score=229.14  Aligned_cols=208  Identities=26%  Similarity=0.294  Sum_probs=178.9

Q ss_pred             cccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEEC
Q 001036          834 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL  913 (1180)
Q Consensus       834 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  913 (1180)
                      ++++|++++|.+.+ ++...|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+.++++|++|++
T Consensus        29 ~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            44555555555543 33337889999999999999999888889999999999999999999988899999999999999


Q ss_pred             cCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCC
Q 001036          914 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN  993 (1180)
Q Consensus       914 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  993 (1180)
                      ++|++++..+..+++++                                                     .|+.|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n  134 (276)
T 2z62_A          108 VETNLASLENFPIGHLK-----------------------------------------------------TLKELNVAHN  134 (276)
T ss_dssp             TTSCCCCSTTCCCTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred             CCCCccccCchhcccCC-----------------------------------------------------CCCEEECcCC
Confidence            99999987776665533                                                     7999999999


Q ss_pred             cccCC-CCccccCCCCCCEEeCccccccccccccccCCCCCC----EEECcCCcCcccCCccccCCCCCCEEEcCCCcCc
Q 001036          994 KLVGH-IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE----SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068 (1180)
Q Consensus       994 ~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~----~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 1068 (1180)
                      ++++. +|..++++++|++|+|++|++++..+..|..+.+|+    .|++++|++++..|..+.. .+|+.|++++|+++
T Consensus       135 ~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~  213 (276)
T 2z62_A          135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLK  213 (276)
T ss_dssp             CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCS
T ss_pred             ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCcee
Confidence            99874 699999999999999999999998888888888877    9999999999766655554 48999999999999


Q ss_pred             ccCCCcccccccCCccccCCCCCCCCCC
Q 001036         1069 GKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus      1069 g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
                      +..+..+..+..+...++.+||+.|+|+
T Consensus       214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          214 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ecCHhHhcccccccEEEccCCcccccCC
Confidence            8777666788889999999999999987

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=9.9e-23  Score=222.22  Aligned_cols=207  Identities=25%  Similarity=0.295  Sum_probs=169.2

Q ss_pred             CCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEec
Q 001036          810 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNL  889 (1180)
Q Consensus       810 ~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  889 (1180)
                      ...+.+++++++++ .+|..+ +.+++.|++++|.+.+ ++...|.++++|++|++++|.++...+..|.++++|++|++
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~-~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNI-PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCC-CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCC-ccCCCC-CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            35788999999998 466544 3678889999888875 44447888889999999999888777777788888999999


Q ss_pred             CCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhc
Q 001036          890 AHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT  969 (1180)
Q Consensus       890 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  969 (1180)
                      ++|++++..+..|..+++|++|++++|++++..|..|++++                                       
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------------  133 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT---------------------------------------  133 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT---------------------------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc---------------------------------------
Confidence            99988877777788888899999999888887776665533                                       


Q ss_pred             cccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCc
Q 001036          970 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 1049 (1180)
Q Consensus       970 ~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~ 1049 (1180)
                                    +|+.|+|++|++++..+..|+.+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+.
T Consensus       134 --------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          134 --------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             --------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             --------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence                          788888999888877666788888889999998888887777888888888999998888877677


Q ss_pred             cccCCCCCCEEEcCCCcCcccCC
Q 001036         1050 QLVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus      1050 ~l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
                      .+..++.|+.|++++|++.+..+
T Consensus       200 ~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          200 AFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTCTTCCEEECCSSCBCCSSS
T ss_pred             HhccccCCCEEEecCCCeeCCCc
Confidence            78888888888888888877665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=9.5e-25  Score=268.83  Aligned_cols=324  Identities=17%  Similarity=0.189  Sum_probs=174.3

Q ss_pred             CCCcccceeEecCCCCceEEEEeccccCCcccccccccccCCCCCCEEEccCcccCC-C--chh-------ccc-ccccC
Q 001036           41 TDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAG-C--AEN-------EGL-EGLSR  109 (1180)
Q Consensus        41 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~-~--~~~-------~~~-~~l~~  109 (1180)
                      .-|++|+++..    ...+.+++.+.+..    .+...+.++++|++|+++++.... .  .+.       ..+ .....
T Consensus        32 ~vck~W~~~~~----~~~~~l~~~~~~~~----~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~  103 (594)
T 2p1m_B           32 LVCKSWYEIER----WCRRKVFIGNCYAV----SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSS  103 (594)
T ss_dssp             TSCHHHHHHHH----HHCCEEEESSTTSS----CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHH
T ss_pred             HHHHHHHHhhh----hhceEEeecccccc----CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHh
Confidence            45789999832    23456666554222    234567789999999999875211 1  000       000 11246


Q ss_pred             CCCCcEEecCCCcCCCCcccccc-CCCCCcEEEccCc-cccCccChhhccCCCCCCeEEccCCCCCchhhhcccCCccee
Q 001036          110 LNNLKMLDLSGNAFNNNVLSSLA-RLSSLRSLYLSDN-RLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSL  187 (1180)
Q Consensus       110 l~~L~~L~Ls~~~i~~~lp~~l~-~l~~L~~L~L~~~-~~~~~~~~~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L  187 (1180)
                      +++|++|+|++|.+++..+..+. .+++|++|++++| .+........+.++++|++|++++|.+.+.....        
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~--------  175 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW--------  175 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG--------
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH--------
Confidence            78999999999998887777776 6899999999999 4443222334457999999999998765432210        


Q ss_pred             cccCCCcccccccccccCCCCccEEeCCCCcCCCccccccccc-ccCCCCccEEEcCCCcCCchhhHHhhccCCCceeec
Q 001036          188 GLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLER-LSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHL  266 (1180)
Q Consensus       188 ~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L  266 (1180)
                                 .......+++|++|++++|. ... ....+.. ...+++|++|++++|......+..+..+++|++|++
T Consensus       176 -----------l~~~~~~~~~L~~L~l~~~~-~~~-~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l  242 (594)
T 2p1m_B          176 -----------LSHFPDTYTSLVSLNISCLA-SEV-SFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT  242 (594)
T ss_dssp             -----------GGGSCTTCCCCCEEECTTCC-SCC-CHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred             -----------HHHHhhcCCcCcEEEecccC-CcC-CHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence                       00112245566666666654 111 1111111 233566666666666333334555556666666665


Q ss_pred             CCcccc------CccchhhhcccCCCcEE-eCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCce
Q 001036          267 SHNILQ------GSIDAKEFDSLSNLEEL-DINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNT  339 (1180)
Q Consensus       267 ~~~~~~------~~~~~~~l~~l~~L~~L-~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~  339 (1180)
                      ..+...      ..+ ...+.++++|+.| .+....  ...++..+..+++|++|++++|.+.+ ..+...+..+++|++
T Consensus       243 ~~~~~~~~~~~~~~l-~~~l~~~~~L~~Ls~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~l~~-~~l~~~~~~~~~L~~  318 (594)
T 2p1m_B          243 GGYTAEVRPDVYSGL-SVALSGCKELRCLSGFWDAV--PAYLPAVYSVCSRLTTLNLSYATVQS-YDLVKLLCQCPKLQR  318 (594)
T ss_dssp             SBCCCCCCHHHHHHH-HHHHHTCTTCCEEECCBTCC--GGGGGGGHHHHTTCCEEECTTCCCCH-HHHHHHHTTCTTCCE
T ss_pred             ccccCccchhhHHHH-HHHHhcCCCcccccCCcccc--hhhHHHHHHhhCCCCEEEccCCCCCH-HHHHHHHhcCCCcCE
Confidence            443210      011 1244556666666 332221  12223333455666666666666332 223334456666666


Q ss_pred             ecccCCcccccccchhhhcCCCCccEEEcC---------CCCCchhhHhhHhhhCCCCCEEEcCCCccc
Q 001036          340 LHLESNNFTATLTTTQELHNFTNLEYLTLD---------DSSLHISLLQSIGSIFPSLKNLSMSGCEVN  399 (1180)
Q Consensus       340 L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~---------~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  399 (1180)
                      |++.+| .. ..........+++|++|++.         .+.++......+...+++|+.|.+..+.+.
T Consensus       319 L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~  385 (594)
T 2p1m_B          319 LWVLDY-IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT  385 (594)
T ss_dssp             EEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred             EeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence            666665 21 11111122346666666662         233444444444444666666655544443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.1e-22  Score=223.53  Aligned_cols=205  Identities=26%  Similarity=0.315  Sum_probs=146.5

Q ss_pred             ccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCC
Q 001036          806 FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS  885 (1180)
Q Consensus       806 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~  885 (1180)
                      +.++++++.+++++|.++ .+|..+ +..++.|++++|.+.+..+. .|.++++|+.|++++|.+++..+.  +.+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~-~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL-PKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC-CTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC-CCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            556788888999888887 455443 35677777777777654444 677777777777777777754332  6677777


Q ss_pred             EEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhh
Q 001036          886 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEI  965 (1180)
Q Consensus       886 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  965 (1180)
                      +|++++|+++ .+|..+..+++|++|++++|++++..|..|.+++                                   
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-----------------------------------  124 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-----------------------------------  124 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----------------------------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-----------------------------------
Confidence            7777777776 5666777777777777777777776666665433                                   


Q ss_pred             hhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcc
Q 001036          966 FEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 1045 (1180)
Q Consensus       966 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g 1045 (1180)
                                        .|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ 
T Consensus       125 ------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-  185 (290)
T 1p9a_G          125 ------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (290)
T ss_dssp             ------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ------------------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence                              6777777777777666666777777777777777777655566677777777777777777 


Q ss_pred             cCCccccCCCCCCEEEcCCCcCccc
Q 001036         1046 KIPRQLVDLNTLAIFIVAYNNLSGK 1070 (1180)
Q Consensus      1046 ~ip~~l~~l~~L~~l~ls~N~l~g~ 1070 (1180)
                      .+|..+.....|+.+++++|++.+.
T Consensus       186 ~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccChhhcccccCCeEEeCCCCccCc
Confidence            6677777777777777777776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.3e-22  Score=219.23  Aligned_cols=205  Identities=24%  Similarity=0.247  Sum_probs=118.5

Q ss_pred             ccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECc
Q 001036          835 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS  914 (1180)
Q Consensus       835 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  914 (1180)
                      .+.++++++.++ .+|. .+.  ++++.|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            455666666655 2444 222  456666666666665555556666666666666666664444455566666666666


Q ss_pred             CCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCc
Q 001036          915 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK  994 (1180)
Q Consensus       915 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  994 (1180)
                      +|++++..+..|.+++                                                     +|+.|+|++|+
T Consensus        94 ~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n~  120 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLV-----------------------------------------------------NLAELRLDRNQ  120 (270)
T ss_dssp             SSCCCCCCTTTTTTCS-----------------------------------------------------SCCEEECCSSC
T ss_pred             CCcCCcCCHhHccccc-----------------------------------------------------CCCEEECCCCc
Confidence            6666655444443322                                                     45666666666


Q ss_pred             ccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCc
Q 001036          995 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 1074 (1180)
Q Consensus       995 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 1074 (1180)
                      +++..|..|+++++|++|+|++|++++..+..|+.+++|+.|+|++|++++..|..|..+++|++|++++|++++..+..
T Consensus       121 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence            66555555666666666666666666555555666666666666666666555555666666666666666666544444


Q ss_pred             ccccccCCccccCCCCCCCCCC
Q 001036         1075 TAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus      1075 ~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
                      +..+..+....+.+||+.|+|+
T Consensus       201 ~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTCTTCCEEECCSSCBCCSSS
T ss_pred             hccccCCCEEEecCCCeeCCCc
Confidence            4445555555666666666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=4.5e-26  Score=280.69  Aligned_cols=207  Identities=18%  Similarity=0.146  Sum_probs=121.1

Q ss_pred             hhcCCcccEEEccCCcccCCCCCCCC-CCCCccEEEccCC-cccccCChhhhhcCCCCcEEEccCCcCCccCCcccc---
Q 001036          612 LENNTKLEFLYLVNDSLAGPFRLPIH-SHKRLRFLDVSNN-NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG---  686 (1180)
Q Consensus       612 ~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n-~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~---  686 (1180)
                      ...+++|+.|++++|.+++..+..+. .+++|++|++++| .++......+...+++|++|++++|.+++..+..+.   
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            34567777777777766654433333 4667777777777 443222223333477888888888877654443333   


Q ss_pred             -CcccCcEEEccCcc--cccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCc-------ccccCCC
Q 001036          687 -NVIFLQFLDLSNNK--LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH-------FVGEIPQ  756 (1180)
Q Consensus       687 -~l~~L~~L~l~~n~--l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~p~  756 (1180)
                       .+++|+.|++++|.  +.......+...+++|++|++++|...+.++..+..+++|++|++..+.       +.+ ++.
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~  259 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV  259 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH
Confidence             55678888888776  2211112223356788888888773222366667777778888755442       332 233


Q ss_pred             cCCCCCCCcEE-ECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCC-ccccCCCCCCEEEccCC
Q 001036          757 SLSKCSSLKGL-YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDN  820 (1180)
Q Consensus       757 ~~~~l~~L~~L-~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n  820 (1180)
                      .+.++++|+.| .+.+... +.+|..+..+++|++|++++|.+++... ..+..+++|+.|++++|
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            56677777777 3333222 2344445566777777777777543221 22446677777777766

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=2e-23  Score=227.84  Aligned_cols=165  Identities=26%  Similarity=0.276  Sum_probs=120.9

Q ss_pred             ccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036          854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE  933 (1180)
Q Consensus       854 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  933 (1180)
                      +.++++|++|++++|.+++..|..|+++++|++|++++|++++..+..+..+++|++|++++|++++..|..|+.++   
T Consensus        81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---  157 (272)
T 3rfs_A           81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT---  157 (272)
T ss_dssp             GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---
T ss_pred             hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc---
Confidence            45556666666666666666666666666777777777777666666667777777777777777766655554433   


Q ss_pred             ccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEe
Q 001036          934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 1013 (1180)
Q Consensus       934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ 1013 (1180)
                                                                        .|+.|++++|++++..|..++++++|++|+
T Consensus       158 --------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          158 --------------------------------------------------NLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             --------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             --------------------------------------------------cCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence                                                              677777888888777777778888888888


Q ss_pred             CccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCccccc
Q 001036         1014 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF 1078 (1180)
Q Consensus      1014 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~ 1078 (1180)
                      +++|++++..|..|+.+++|+.|++++|+++|..|       .|+.++++.|+++|.+|.+.+.+
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCccccc
Confidence            88888888888788888888888888888886544       57888888899999888865443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=6.1e-23  Score=224.03  Aligned_cols=165  Identities=25%  Similarity=0.250  Sum_probs=89.3

Q ss_pred             ccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036          854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE  933 (1180)
Q Consensus       854 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  933 (1180)
                      +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..|++++   
T Consensus        59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---  133 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT---  133 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT---
T ss_pred             cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC---
Confidence            34445555555555555532  2455555555555555555555555555555555555555555554444443322   


Q ss_pred             ccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEe
Q 001036          934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 1013 (1180)
Q Consensus       934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ 1013 (1180)
                                                                        .|+.|++++|++++..|..++.+++|+.|+
T Consensus       134 --------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  163 (272)
T 3rfs_A          134 --------------------------------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELD  163 (272)
T ss_dssp             --------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             --------------------------------------------------CCCEEECCCCccCccCHHHhccCccCCEEE
Confidence                                                              455555555555554444455555555555


Q ss_pred             CccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036         1014 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus      1014 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      +++|++++..|..|+.+++|+.|++++|++++..|..+..++.|+.|++++|++.|.+|.
T Consensus       164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            555555555555555555555555555555555555555555555555555555555553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=6.1e-22  Score=217.50  Aligned_cols=205  Identities=27%  Similarity=0.239  Sum_probs=177.7

Q ss_pred             CCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccE
Q 001036          758 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQ  837 (1180)
Q Consensus       758 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~  837 (1180)
                      ++++++++++++++|.++ .+|..+.  +.++.|++++|.+++..+..|..+++|++|++++|.+++             
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------   69 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-------------   69 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-------------
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-------------
Confidence            567888999999999987 5666554  688999999999988888888899999999999988863             


Q ss_pred             EEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCc
Q 001036          838 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN  917 (1180)
Q Consensus       838 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  917 (1180)
                                 ++.  ...+++|+.|++++|+++ .+|..+.++++|++|++++|++++..|..|..+++|++|+|++|+
T Consensus        70 -----------~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~  135 (290)
T 1p9a_G           70 -----------LQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE  135 (290)
T ss_dssp             -----------EEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred             -----------ccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence                       222  256789999999999998 678889999999999999999998888999999999999999999


Q ss_pred             CcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccC
Q 001036          918 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG  997 (1180)
Q Consensus       918 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g  997 (1180)
                      +++..+..|..++                                                     +|+.|+|++|+|++
T Consensus       136 l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~l~~  162 (290)
T 1p9a_G          136 LKTLPPGLLTPTP-----------------------------------------------------KLEKLSLANNNLTE  162 (290)
T ss_dssp             CCCCCTTTTTTCT-----------------------------------------------------TCCEEECTTSCCSC
T ss_pred             CCccChhhccccc-----------------------------------------------------CCCEEECCCCcCCc
Confidence            9988777776543                                                     79999999999997


Q ss_pred             CCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCccc
Q 001036          998 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 1046 (1180)
Q Consensus       998 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ 1046 (1180)
                      ..+..|..+++|+.|+|++|+|+ .+|..+..+.+|+.|+|++|.+.+.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            77777899999999999999999 7888888889999999999998754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.4e-21  Score=210.42  Aligned_cols=181  Identities=26%  Similarity=0.266  Sum_probs=150.5

Q ss_pred             cEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcC
Q 001036          836 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD  915 (1180)
Q Consensus       836 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  915 (1180)
                      +.++++++.+. .+|. .+.  ++++.|++++|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++
T Consensus        17 ~~l~~~~~~l~-~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           17 KEVDCQGKSLD-SVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             TEEECTTCCCS-SCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             eEEecCCCCcc-ccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            34444444443 3444 222  5788899999999888888889999999999999999988888889999999999999


Q ss_pred             CcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcc
Q 001036          916 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL  995 (1180)
Q Consensus       916 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  995 (1180)
                      |++++..+..|..++                                                     +|+.|+|++|+|
T Consensus        93 n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~l  119 (251)
T 3m19_A           93 NQLASLPLGVFDHLT-----------------------------------------------------QLDKLYLGGNQL  119 (251)
T ss_dssp             SCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCC
T ss_pred             CcccccChhHhcccC-----------------------------------------------------CCCEEEcCCCcC
Confidence            999887777665533                                                     788999999999


Q ss_pred             cCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036          996 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus       996 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      ++..+..|..+++|++|+|++|+|++..|..|+.+++|+.|||++|++++..|..+..++.|+.|++++|++++..++
T Consensus       120 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred             CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence            977777789999999999999999988888899999999999999999988888899999999999999999987443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=2.8e-23  Score=237.10  Aligned_cols=108  Identities=18%  Similarity=0.085  Sum_probs=58.4

Q ss_pred             EEEccCcccccccChhhhhcCCCCCEEEccCCccccccc----ccccCCc-cCceeeccCCcccccCCCcCCCC-----C
Q 001036          693 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF----SRIFSLR-NLRWLLLEGNHFVGEIPQSLSKC-----S  762 (1180)
Q Consensus       693 ~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~  762 (1180)
                      .+++++|.++|.+|... ....+|++|++++|.+++..+    ..+..++ +|++|+|++|.+++..+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            35666777766555543 234447777777776665555    4555555 56666666666655544444432     5


Q ss_pred             CCcEEECcCCcCCCCCcccccC----C-CCCCeEEccCCcCCCC
Q 001036          763 SLKGLYLNNNNLSGKIPRWLGN----L-KGLQHIVMPKNHLEGP  801 (1180)
Q Consensus       763 ~L~~L~l~~n~l~~~~p~~~~~----l-~~L~~L~l~~n~l~~~  801 (1180)
                      +|++|++++|.+++..+..+..    + ++|++|++++|++++.
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            5555555555555444432222    2 4455555555554433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.9e-22  Score=224.99  Aligned_cols=209  Identities=20%  Similarity=0.226  Sum_probs=128.6

Q ss_pred             CCCCeEEccCCcCCCCCCccc--cCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEE
Q 001036          786 KGLQHIVMPKNHLEGPIPVEF--CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL  863 (1180)
Q Consensus       786 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  863 (1180)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|++++..|.                    ++...+..+++|++|
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~--------------------~~~~~~~~~~~L~~L  150 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW--------------------LAELQQWLKPGLKVL  150 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS--------------------HHHHHTTBCSCCCEE
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh--------------------hHHHHhhhccCCCEE
Confidence            446666666666666666655  5666666666666666543331                    111133456667777


Q ss_pred             ECcCccCccccchhhhcCCCCCEEecCCCccccC--C--CccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCC
Q 001036          864 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE--V--PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS  939 (1180)
Q Consensus       864 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  939 (1180)
                      ++++|.+++..|..|+++++|++|+|++|++.+.  +  +..+..+++|++|+|++|+++...+....            
T Consensus       151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~------------  218 (310)
T 4glp_A          151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA------------  218 (310)
T ss_dssp             EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH------------
T ss_pred             EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH------------
Confidence            7777777666666666777777777777766542  1  22235667777777777766522110000            


Q ss_pred             CCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCC---CCCCEEeCcc
Q 001036          940 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL---TRIQTLNLSH 1016 (1180)
Q Consensus       940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l---~~L~~L~Ls~ 1016 (1180)
                                                            ....++.|+.|||++|++++.+|..++.+   ++|++|+|++
T Consensus       219 --------------------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~  260 (310)
T 4glp_A          219 --------------------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF  260 (310)
T ss_dssp             --------------------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred             --------------------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence                                                  00113467777777777777767666665   4777777777


Q ss_pred             ccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcc
Q 001036         1017 NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus      1017 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
                      |+|+ .+|..+.  ++|+.|||++|+|++. |. +..++.|+.|++++|+++.
T Consensus       261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            7777 5666664  6777888888887753 33 5667777788888887763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2.3e-23  Score=240.63  Aligned_cols=167  Identities=19%  Similarity=0.222  Sum_probs=109.8

Q ss_pred             cccCCCCCcEEECcCccCccccchhhh----cC---------CCCCEEecCCCccc-cCCC---ccccCCCCCCEEECcC
Q 001036          853 TFFNCSSLVTLDLSYNYLNGSIPDWID----GL---------SQLSHLNLAHNNLE-GEVP---IQLCRLNQLQLLDLSD  915 (1180)
Q Consensus       853 ~~~~~~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~L~~N~l~-~~~p---~~~~~l~~L~~L~Ls~  915 (1180)
                      .+..+++|+.|+|++|.+++..+..+.    .+         ++|++|++++|+++ +.+|   ..+..+++|++|+|++
T Consensus       117 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  196 (386)
T 2ca6_A          117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ  196 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC
Confidence            445556666666666666543333332    22         66667777766665 3333   3455666777777777


Q ss_pred             CcCc--c---cCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEc
Q 001036          916 NNLH--G---LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL  990 (1180)
Q Consensus       916 N~l~--~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  990 (1180)
                      |+++  |   ..|..+..                                                     ++.|+.|+|
T Consensus       197 n~l~~~g~~~l~~~~l~~-----------------------------------------------------~~~L~~L~L  223 (386)
T 2ca6_A          197 NGIRPEGIEHLLLEGLAY-----------------------------------------------------CQELKVLDL  223 (386)
T ss_dssp             SCCCHHHHHHHHHTTGGG-----------------------------------------------------CTTCCEEEC
T ss_pred             CCCCHhHHHHHHHHHhhc-----------------------------------------------------CCCccEEEC
Confidence            7665  2   11112211                                                     336777777


Q ss_pred             cCCccc----CCCCccccCCCCCCEEeCcccccccc----ccccc--cCCCCCCEEECcCCcCcc----cCCccc-cCCC
Q 001036          991 SCNKLV----GHIPPQIGNLTRIQTLNLSHNNLTGT----IPLTF--SNLRHIESLDLSYNKLSG----KIPRQL-VDLN 1055 (1180)
Q Consensus       991 s~N~l~----g~~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~--~~l~~L~~L~Ls~N~l~g----~ip~~l-~~l~ 1055 (1180)
                      ++|.++    +.+|..+..+++|+.|+|++|++++.    +|..+  +.+++|+.|+|++|++++    .+|..+ .+++
T Consensus       224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~  303 (386)
T 2ca6_A          224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP  303 (386)
T ss_dssp             CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred             cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence            777775    56677778888888888888888876    56666  338888888888888887    477777 5678


Q ss_pred             CCCEEEcCCCcCcccCC
Q 001036         1056 TLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus      1056 ~L~~l~ls~N~l~g~ip 1072 (1180)
                      .|++|++++|++++..|
T Consensus       304 ~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          304 DLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCCEEECTTSBSCTTSH
T ss_pred             CceEEEccCCcCCcchh
Confidence            88888888888887664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.5e-21  Score=206.98  Aligned_cols=196  Identities=21%  Similarity=0.289  Sum_probs=115.9

Q ss_pred             CCCeEEccCCcCCCCCCccccCCCCCCEEEccCCc-ccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEEC
Q 001036          787 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN-ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL  865 (1180)
Q Consensus       787 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L  865 (1180)
                      +|++|++++|++++..+..|.++++|++|++++|+ ++                        .++...|.++++|++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~------------------------~i~~~~f~~l~~L~~L~l   87 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ------------------------QLESHSFYNLSKVTHIEI   87 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC------------------------EECTTTEESCTTCCEEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc------------------------eeCHhHcCCCcCCcEEEC
Confidence            45555555555554444455555555555555554 43                        222224556666666666


Q ss_pred             cC-ccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCC---EEECcCC-cCcccCCCCccCcccccccCCCCC
Q 001036          866 SY-NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ---LLDLSDN-NLHGLIPSCFDNTTLHESYNNNSS  940 (1180)
Q Consensus       866 ~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~~~~~~~~~~~~~  940 (1180)
                      ++ |++++..+..|.++++|++|++++|++++ +|. +..+++|+   +|++++| ++++..+..|.+++          
T Consensus        88 ~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~----------  155 (239)
T 2xwt_C           88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC----------  155 (239)
T ss_dssp             EEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB----------
T ss_pred             CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh----------
Confidence            66 66665555566666666666666666664 444 56666666   6666666 66655555554432          


Q ss_pred             CCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccc-eEEccCCcccCCCCccccCCCCCCEEeCcccc-
Q 001036          941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA-GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN- 1018 (1180)
Q Consensus       941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~- 1018 (1180)
                                                                 .|+ .|++++|+++ .+|......++|+.|+|++|+ 
T Consensus       156 -------------------------------------------~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~  191 (239)
T 2xwt_C          156 -------------------------------------------NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKY  191 (239)
T ss_dssp             -------------------------------------------SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTT
T ss_pred             -------------------------------------------cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCC
Confidence                                                       566 6667777666 344333223667777777773 


Q ss_pred             ccccccccccCC-CCCCEEECcCCcCcccCCccccCCCCCCEEEcCCC
Q 001036         1019 LTGTIPLTFSNL-RHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 1065 (1180)
Q Consensus      1019 l~g~~p~~~~~l-~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N 1065 (1180)
                      +++..|..|+++ ++|+.||+++|++++ +|..  .+..|+.|+++++
T Consensus       192 l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          192 LTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             cccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            776656667777 777777777777763 3433  4556666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.1e-21  Score=216.51  Aligned_cols=208  Identities=22%  Similarity=0.226  Sum_probs=114.0

Q ss_pred             ccCceeeccCCcccccCCCcC--CCCCCCcEEECcCCcCCCCCc----ccccCCCCCCeEEccCCcCCCCCCccccCCCC
Q 001036          738 RNLRWLLLEGNHFVGEIPQSL--SKCSSLKGLYLNNNNLSGKIP----RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS  811 (1180)
Q Consensus       738 ~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  811 (1180)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..|    ..+..+++|++|++++|++.+..|..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            445566666666555555555  556666666666666654433    23345666666666666666555666666666


Q ss_pred             CCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccch----hhhcCCCCCEE
Q 001036          812 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD----WIDGLSQLSHL  887 (1180)
Q Consensus       812 L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L  887 (1180)
                      |++|++++|++.+..                    +..+...+..+++|++|++++|+++. +|.    .++++++|++|
T Consensus       171 L~~L~Ls~N~l~~~~--------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L  229 (310)
T 4glp_A          171 LTSLDLSDNPGLGER--------------------GLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSL  229 (310)
T ss_dssp             CCEEECCSCTTCHHH--------------------HHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSE
T ss_pred             CCEEECCCCCCccch--------------------hhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEE
Confidence            666666666654210                    00001022445556666666665542 121    13444455555


Q ss_pred             ecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhh
Q 001036          888 NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE  967 (1180)
Q Consensus       888 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  967 (1180)
                      +|++|+++                        +..|..+..+.                                     
T Consensus       230 ~Ls~N~l~------------------------~~~p~~~~~~~-------------------------------------  248 (310)
T 4glp_A          230 DLSHNSLR------------------------ATVNPSAPRCM-------------------------------------  248 (310)
T ss_dssp             ECTTSCCC------------------------CCCCSCCSSCC-------------------------------------
T ss_pred             ECCCCCCC------------------------ccchhhHHhcc-------------------------------------
Confidence            55555444                        44444333221                                     


Q ss_pred             hccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcc
Q 001036          968 FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 1045 (1180)
Q Consensus       968 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g 1045 (1180)
                                   .++.|+.|+|++|+|+ .+|..+.  ++|++|||++|+|++. |. +..+++|+.|+|++|+++.
T Consensus       249 -------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          249 -------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             -------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence                         0124666666666666 4555553  5777777777777753 33 5666777777777777763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=7.7e-23  Score=233.52  Aligned_cols=177  Identities=21%  Similarity=0.182  Sum_probs=102.7

Q ss_pred             eeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCc----ccccCCC-CCCeEEccCCcCCCCCCccccCC-----CC
Q 001036          742 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP----RWLGNLK-GLQHIVMPKNHLEGPIPVEFCRL-----DS  811 (1180)
Q Consensus       742 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~  811 (1180)
                      +++++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45778888888887777767778888888888876666    6677777 78888888888887777666654     78


Q ss_pred             CCEEEccCCcccccCCCCcC-----C-CcccEEEcCCcccccccCccc----ccC-CCCCcEEECcCccCcccc----ch
Q 001036          812 LQILDISDNNISGSLPSCFY-----P-LSIKQVHLSKNMLHGQLKEGT----FFN-CSSLVTLDLSYNYLNGSI----PD  876 (1180)
Q Consensus       812 L~~L~l~~n~l~~~~p~~~~-----~-~~L~~L~l~~n~~~~~~~~~~----~~~-~~~L~~L~L~~n~l~~~~----p~  876 (1180)
                      |++|++++|++++..+..+.     . .+|++|++++|.+++..+. .    +.. .++|++|+|++|.+++..    +.
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            88888888888765443221     1 3455555555554432221 1    112 234555555555544322    22


Q ss_pred             hhhcCC-CCCEEecCCCccccCCCcccc----CC-CCCCEEECcCCcCc
Q 001036          877 WIDGLS-QLSHLNLAHNNLEGEVPIQLC----RL-NQLQLLDLSDNNLH  919 (1180)
Q Consensus       877 ~~~~l~-~L~~L~L~~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~  919 (1180)
                      .+..++ +|++|+|++|++++..+..++    .+ ++|++|||++|+++
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            223333 455555555555444333222    22 34555555555444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.7e-20  Score=202.06  Aligned_cols=160  Identities=29%  Similarity=0.326  Sum_probs=140.1

Q ss_pred             cccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEEC
Q 001036          834 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL  913 (1180)
Q Consensus       834 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  913 (1180)
                      .++.|++++|.+.+..+. .|.++++|++|+|++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|+|
T Consensus        36 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            445555555555443333 7889999999999999999999999999999999999999999888889999999999999


Q ss_pred             cCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCC
Q 001036          914 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN  993 (1180)
Q Consensus       914 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  993 (1180)
                      ++|++++..+..|..++                                                     .|+.|+|++|
T Consensus       115 ~~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N  141 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLT-----------------------------------------------------KLKELRLNTN  141 (251)
T ss_dssp             CSSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred             CCCcCCCcChhHhccCC-----------------------------------------------------cccEEECcCC
Confidence            99999988777666543                                                     7999999999


Q ss_pred             cccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccC
Q 001036          994 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047 (1180)
Q Consensus       994 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i 1047 (1180)
                      +|++..|..|+.+++|++|+|++|++++..|..|..+++|+.|+|++|++++..
T Consensus       142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            999888878999999999999999999988889999999999999999999763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=7e-23  Score=236.56  Aligned_cols=193  Identities=18%  Similarity=0.222  Sum_probs=123.7

Q ss_pred             cCCCCCCeEEccCCcCCC----CCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCC-
Q 001036          783 GNLKGLQHIVMPKNHLEG----PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-  857 (1180)
Q Consensus       783 ~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-  857 (1180)
                      ..+++|++|++++|.+.+    .+|..+..+++|++|++++|.+++..+..                   ++. .+..+ 
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-------------------l~~-~l~~l~  150 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK-------------------IAR-ALQELA  150 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHH-------------------HHH-HHHHHH
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHH-------------------HHH-HHHHHh
Confidence            455566666666665554    24445556666666666666664322111                   111 12222 


Q ss_pred             --------CCCcEEECcCccCc-cccc---hhhhcCCCCCEEecCCCccc--c---CCCccccCCCCCCEEECcCCcCc-
Q 001036          858 --------SSLVTLDLSYNYLN-GSIP---DWIDGLSQLSHLNLAHNNLE--G---EVPIQLCRLNQLQLLDLSDNNLH-  919 (1180)
Q Consensus       858 --------~~L~~L~L~~n~l~-~~~p---~~~~~l~~L~~L~L~~N~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~-  919 (1180)
                              ++|+.|++++|+++ +.+|   ..+..+++|++|++++|+++  |   ..|..+..+++|++|+|++|.++ 
T Consensus       151 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~  230 (386)
T 2ca6_A          151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH  230 (386)
T ss_dssp             HHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred             hhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence                    56777777777765 3344   35566777777777777766  2   33446667777777777777765 


Q ss_pred             ---ccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCccc
Q 001036          920 ---GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV  996 (1180)
Q Consensus       920 ---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  996 (1180)
                         +.+|..+..                                                     ++.|+.|+|++|+++
T Consensus       231 ~g~~~l~~~l~~-----------------------------------------------------~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          231 LGSSALAIALKS-----------------------------------------------------WPNLRELGLNDCLLS  257 (386)
T ss_dssp             HHHHHHHHHGGG-----------------------------------------------------CTTCCEEECTTCCCC
T ss_pred             HHHHHHHHHHcc-----------------------------------------------------CCCcCEEECCCCCCc
Confidence               333333322                                                     236777777777777


Q ss_pred             CC----CCccc--cCCCCCCEEeCccccccc----cccccc-cCCCCCCEEECcCCcCcccCC
Q 001036          997 GH----IPPQI--GNLTRIQTLNLSHNNLTG----TIPLTF-SNLRHIESLDLSYNKLSGKIP 1048 (1180)
Q Consensus       997 g~----~p~~~--~~l~~L~~L~Ls~N~l~g----~~p~~~-~~l~~L~~L~Ls~N~l~g~ip 1048 (1180)
                      +.    +|..+  +.+++|+.|+|++|.+++    .+|..+ .++++|+.|++++|++++..|
T Consensus       258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            55    55666  448899999999999998    588877 678999999999999998775

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=7.3e-21  Score=211.27  Aligned_cols=81  Identities=23%  Similarity=0.341  Sum_probs=39.3

Q ss_pred             CCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEE
Q 001036          736 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL  815 (1180)
Q Consensus       736 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  815 (1180)
                      .+++|++|++++|.+.. +| .+..+++|++|++++|.+.+.. . +..+++|++|++++|++++.  ..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            45556666666665553 22 3455555555555555554322 2 44555555555555554432  134444444444


Q ss_pred             EccCCcc
Q 001036          816 DISDNNI  822 (1180)
Q Consensus       816 ~l~~n~l  822 (1180)
                      ++++|++
T Consensus       113 ~l~~n~l  119 (308)
T 1h6u_A          113 DLTSTQI  119 (308)
T ss_dssp             ECTTSCC
T ss_pred             ECCCCCC
Confidence            4444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=5.2e-22  Score=224.97  Aligned_cols=87  Identities=18%  Similarity=0.150  Sum_probs=43.2

Q ss_pred             ccceEEccCCc-ccCCCCccccCCCCCCEEeCcccc-ccccccccccCCCCCCEEECcCCcCcccCCccccCC-CCCCEE
Q 001036          984 LLAGLDLSCNK-LVGHIPPQIGNLTRIQTLNLSHNN-LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIF 1060 (1180)
Q Consensus       984 ~L~~LdLs~N~-l~g~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~l 1060 (1180)
                      +|+.|++++|. +++..+..++++++|+.|++++|. ++......++++++|+.|++++| ++.   ..+..+ ..+..|
T Consensus       223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L  298 (336)
T 2ast_B          223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHL  298 (336)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTS
T ss_pred             CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcce
Confidence            34444444444 343444455555566666666663 21111124555666666666666 221   122222 225555


Q ss_pred             EcCCCcCcccCCCc
Q 001036         1061 IVAYNNLSGKIPEW 1074 (1180)
Q Consensus      1061 ~ls~N~l~g~ip~~ 1074 (1180)
                      ++++|++++..|.+
T Consensus       299 ~l~~n~l~~~~~~~  312 (336)
T 2ast_B          299 QINCSHFTTIARPT  312 (336)
T ss_dssp             EESCCCSCCTTCSS
T ss_pred             EEecccCccccCCc
Confidence            56777777766653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=9.5e-21  Score=202.48  Aligned_cols=199  Identities=17%  Similarity=0.220  Sum_probs=158.3

Q ss_pred             cccEEEcCCcccccccCcccccCCCCCcEEECcCcc-CccccchhhhcCCCCCEEecCC-CccccCCCccccCCCCCCEE
Q 001036          834 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY-LNGSIPDWIDGLSQLSHLNLAH-NNLEGEVPIQLCRLNQLQLL  911 (1180)
Q Consensus       834 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L  911 (1180)
                      +++.|++++|.+++ +|...|.++++|+.|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSE-ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceE-ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            44444444444443 444478999999999999997 8877778999999999999999 99998888899999999999


Q ss_pred             ECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEcc
Q 001036          912 DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS  991 (1180)
Q Consensus       912 ~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  991 (1180)
                      ++++|++++ +|. |..++                                                  .+..|+.|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~--------------------------------------------------~L~~L~~L~l~  138 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVY--------------------------------------------------STDIFFILEIT  138 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCC--------------------------------------------------BCCSEEEEEEE
T ss_pred             eCCCCCCcc-ccc-ccccc--------------------------------------------------ccccccEEECC
Confidence            999999997 554 54433                                                  01123499999


Q ss_pred             CC-cccCCCCccccCCCCCC-EEeCccccccccccccccCCCCCCEEECcCCc-CcccCCccccCC-CCCCEEEcCCCcC
Q 001036          992 CN-KLVGHIPPQIGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK-LSGKIPRQLVDL-NTLAIFIVAYNNL 1067 (1180)
Q Consensus       992 ~N-~l~g~~p~~~~~l~~L~-~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~-l~g~ip~~l~~l-~~L~~l~ls~N~l 1067 (1180)
                      +| ++++..+..|.++++|+ .|++++|+++...+..|.. ++|+.|++++|+ +++..|..|..+ ++|+.|++++|++
T Consensus       139 ~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             SCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred             CCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence            99 99987788899999999 9999999999444445555 899999999995 997778889999 9999999999999


Q ss_pred             cccCCCcccccccCCccccCCC
Q 001036         1068 SGKIPEWTAQFATFNKSSYDGN 1089 (1180)
Q Consensus      1068 ~g~ip~~~~~~~~~~~~~~~~N 1089 (1180)
                      ++ +|..  .+..+....+.++
T Consensus       218 ~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          218 TA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CC-CCCT--TCTTCSEEECTTC
T ss_pred             cc-CChh--HhccCceeeccCc
Confidence            95 4442  4555555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=5.1e-22  Score=225.05  Aligned_cols=254  Identities=20%  Similarity=0.225  Sum_probs=194.0

Q ss_pred             CCCCEEEccCCcccccccccccCC--ccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCC-CcccccCCCCCCe
Q 001036          714 VNLEFLSLSNNSLKGHIFSRIFSL--RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK-IPRWLGNLKGLQH  790 (1180)
Q Consensus       714 ~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~  790 (1180)
                      ..++.+++++|.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            34788999998876   4556666  7899999999998877665 55788999999999988765 7777888888999


Q ss_pred             EEccCCcCCCCCCccccCCCCCCEEEccCC-cccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCc-
Q 001036          791 IVMPKNHLEGPIPVEFCRLDSLQILDISDN-NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN-  868 (1180)
Q Consensus       791 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-  868 (1180)
                      |++++|.+++..+..+..+++|++|++++| .+++.                      .++. .+.++++|+.|++++| 
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------~l~~-~~~~~~~L~~L~l~~~~  179 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------ALQT-LLSSCSRLDELNLSWCF  179 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------------------HHHH-HHHHCTTCCEEECCCCT
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------------------HHHH-HHhcCCCCCEEcCCCCC
Confidence            999888888777778888888888888888 45421                      1232 5677889999999999 


Q ss_pred             cCccc-cchhhhcCC-CCCEEecCCC--ccc-cCCCccccCCCCCCEEECcCCc-CcccCCCCccCcccccccCCCCCCC
Q 001036          869 YLNGS-IPDWIDGLS-QLSHLNLAHN--NLE-GEVPIQLCRLNQLQLLDLSDNN-LHGLIPSCFDNTTLHESYNNNSSPD  942 (1180)
Q Consensus       869 ~l~~~-~p~~~~~l~-~L~~L~L~~N--~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~~~~~~~~~  942 (1180)
                      .+++. ++..+..++ +|++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+..              
T Consensus       180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--------------  245 (336)
T 2ast_B          180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--------------  245 (336)
T ss_dssp             TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG--------------
T ss_pred             CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC--------------
Confidence            88864 677888899 9999999999  455 4567778888999999999998 66555554443              


Q ss_pred             CCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCc---cccCCCCCCEEeCccccc
Q 001036          943 KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP---QIGNLTRIQTLNLSHNNL 1019 (1180)
Q Consensus       943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~---~~~~l~~L~~L~Ls~N~l 1019 (1180)
                                                             ++.|+.|++++|.  +..|.   .++++++|+.|++++| +
T Consensus       246 ---------------------------------------l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~-i  283 (336)
T 2ast_B          246 ---------------------------------------LNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI-V  283 (336)
T ss_dssp             ---------------------------------------CTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred             ---------------------------------------CCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc-c
Confidence                                                   2378899999996  23333   5788899999999988 3


Q ss_pred             cccccccccCC-CCCCEEECcCCcCcccCCccccC
Q 001036         1020 TGTIPLTFSNL-RHIESLDLSYNKLSGKIPRQLVD 1053 (1180)
Q Consensus      1020 ~g~~p~~~~~l-~~L~~L~Ls~N~l~g~ip~~l~~ 1053 (1180)
                      +   .+.+..+ .+++.|++++|++++..|..++.
T Consensus       284 ~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          284 P---DGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             C---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             C---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence            3   2234444 34777778999999988887765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=4.8e-20  Score=204.69  Aligned_cols=209  Identities=21%  Similarity=0.335  Sum_probs=129.6

Q ss_pred             ceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCC
Q 001036          741 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN  820 (1180)
Q Consensus       741 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  820 (1180)
                      ..+.+..+.++...  ....+++|+.|++++|.+.. +| .+..+++|++|++++|.+++..+  +..+++|++|++++|
T Consensus        22 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n   95 (308)
T 1h6u_A           22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (308)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC
Confidence            33444555544332  23456778888888887763 44 46777777777777777765433  667777777777777


Q ss_pred             cccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCc
Q 001036          821 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI  900 (1180)
Q Consensus       821 ~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  900 (1180)
                      ++++                        ++  .+..+++|+.|++++|++++. |. +..+++|++|++++|++++..+ 
T Consensus        96 ~l~~------------------------~~--~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-  146 (308)
T 1h6u_A           96 PLKN------------------------VS--AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP-  146 (308)
T ss_dssp             CCSC------------------------CG--GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             cCCC------------------------ch--hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc-
Confidence            7652                        11  356677777777777777753 32 6777777777777777765433 


Q ss_pred             cccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccch
Q 001036          901 QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR  980 (1180)
Q Consensus       901 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  980 (1180)
                       +..+++|++|++++|++++..+  +..                                                    
T Consensus       147 -l~~l~~L~~L~l~~n~l~~~~~--l~~----------------------------------------------------  171 (308)
T 1h6u_A          147 -LAGLTNLQYLSIGNAQVSDLTP--LAN----------------------------------------------------  171 (308)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCGG--GTT----------------------------------------------------
T ss_pred             -ccCCCCccEEEccCCcCCCChh--hcC----------------------------------------------------
Confidence             6666677777777776664332  222                                                    


Q ss_pred             hccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCc
Q 001036          981 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044 (1180)
Q Consensus       981 ~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1044 (1180)
                       ++.|+.|++++|++++..|  +..+++|+.|+|++|++++..|  +..+++|+.|++++|+++
T Consensus       172 -l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          172 -LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             -CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             -CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence             2256666666666664332  5666666666666666664443  556666666666666665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=3.2e-20  Score=220.55  Aligned_cols=115  Identities=26%  Similarity=0.381  Sum_probs=57.7

Q ss_pred             CCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECc
Q 001036          787 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS  866 (1180)
Q Consensus       787 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  866 (1180)
                      +|+.|++++|.+++ +|..+  .++|++|++++|+++ .+|  -...+|+.|++++|.+++ +|.  +.+  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECC
Confidence            67777777777775 55544  266777777777776 444  123344444444444443 333  222  44444444


Q ss_pred             CccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcc
Q 001036          867 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG  920 (1180)
Q Consensus       867 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  920 (1180)
                      +|++++ +|.   .+++|+.|++++|++++ +|.   .+++|++|+|++|++++
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~  174 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF  174 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence            444443 222   33444444444444443 332   23444444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.3e-19  Score=188.98  Aligned_cols=161  Identities=25%  Similarity=0.260  Sum_probs=137.3

Q ss_pred             CCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccC
Q 001036          857 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN  936 (1180)
Q Consensus       857 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  936 (1180)
                      .++|++|++++|++++..+..|+++++|++|++++|++++..+..|..+++|++|++++|++++..+..|.+++      
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------  100 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT------  100 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc------
Confidence            35788999999999887777888999999999999999877777788899999999999999877766665533      


Q ss_pred             CCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcc
Q 001036          937 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 1016 (1180)
Q Consensus       937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~ 1016 (1180)
                                                                     .|+.|+|++|++++..+..|.++++|++|+|++
T Consensus       101 -----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A          101 -----------------------------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             -----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             -----------------------------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence                                                           789999999999987777789999999999999


Q ss_pred             ccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccc
Q 001036         1017 NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077 (1180)
Q Consensus      1017 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~ 1077 (1180)
                      |++++..+..|..+++|+.|++++|.+++.       ++.|++|+++.|+++|.+|.+.+.
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             CccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCcc
Confidence            999988777899999999999999988754       457889999999999999985543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2.2e-19  Score=203.59  Aligned_cols=208  Identities=25%  Similarity=0.222  Sum_probs=136.3

Q ss_pred             cEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCC-CcCCCCCCCcE-EEC
Q 001036          692 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP-QSLSKCSSLKG-LYL  769 (1180)
Q Consensus       692 ~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~l  769 (1180)
                      ++++.++++++ .||..+   .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+| ..|.+++++.. +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56777777777 777655   2567777888777776666677777777777777777765554 35666766654 455


Q ss_pred             cCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCC-cccccCCCCcCCCcccEEEcCCcccccc
Q 001036          770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN-NISGSLPSCFYPLSIKQVHLSKNMLHGQ  848 (1180)
Q Consensus       770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~~L~~L~l~~n~~~~~  848 (1180)
                      ++|++++..|..|..+++|++|++++|++.+..+..+....++..+++.++ ++.                        .
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~------------------------~  143 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------------------T  143 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC------------------------E
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc------------------------c
Confidence            566776555666777777777777777776655555555566666666543 332                        3


Q ss_pred             cCcccccCCC-CCcEEECcCccCccccchhhhcCCCCCEEecCC-CccccCCCccccCCCCCCEEECcCCcCcccCCCCc
Q 001036          849 LKEGTFFNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH-NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF  926 (1180)
Q Consensus       849 ~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  926 (1180)
                      ++...|..+. .++.|++++|+|+...+..| ...+|++|++++ |.++...+..|..+++|++|||++|+|+...+..|
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~  222 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL  222 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred             ccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence            4443555553 57778888888875444444 345678888875 55554444567788888888888888876655444


Q ss_pred             cC
Q 001036          927 DN  928 (1180)
Q Consensus       927 ~~  928 (1180)
                      .+
T Consensus       223 ~~  224 (350)
T 4ay9_X          223 EN  224 (350)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=3.5e-19  Score=201.98  Aligned_cols=244  Identities=18%  Similarity=0.138  Sum_probs=167.8

Q ss_pred             cEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCE-EEc
Q 001036          643 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF-LSL  721 (1180)
Q Consensus       643 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~-L~L  721 (1180)
                      ++++.++++++ .+|..+   .+++++|++++|+|+.+.+.+|.++++|++|+|++|++.+.+|...|.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            57888888888 788765   3578889999998887666788888888888888888876777776666766654 455


Q ss_pred             cCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCC
Q 001036          722 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP  801 (1180)
Q Consensus       722 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  801 (1180)
                      ..|+++...|..|..+++|++|++++|++.+..+..+....++..+++.++                       +++...
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l  144 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI  144 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence            556776666666666666666666666666555444444455555555432                       223222


Q ss_pred             CCccccCC-CCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhc
Q 001036          802 IPVEFCRL-DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG  880 (1180)
Q Consensus       802 ~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~  880 (1180)
                      .+..|..+ ..++.|++++|+++...+..+...+++++++++++..+.+|.++|.++++|+.||+++|+|+...+..|. 
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~-  223 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE-  223 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT-
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc-
Confidence            23334443 2466677777777655555555667777777765555678877899999999999999999966555554 


Q ss_pred             CCCCCEEecCCCccccCCCccccCCCCCCEEECcCCc
Q 001036          881 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN  917 (1180)
Q Consensus       881 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  917 (1180)
                        +|+.|.+.++.--..+| .+.++++|+.++++++.
T Consensus       224 --~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          224 --NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             --TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             --cchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence              55566555544334666 48889999999998653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.3e-19  Score=185.95  Aligned_cols=65  Identities=26%  Similarity=0.163  Sum_probs=35.3

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 1055 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 1055 (1180)
                      +|+.|+|++|++++..+..+..+++|++|++++|.+++.       +++|+.|+++.|+++|.+|.+++.++
T Consensus       125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCcccc
Confidence            455555555555544444455555555666665555432       23455566666666666666555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=4.1e-19  Score=210.99  Aligned_cols=194  Identities=28%  Similarity=0.326  Sum_probs=140.5

Q ss_pred             CCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCC
Q 001036          763 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK  842 (1180)
Q Consensus       763 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~  842 (1180)
                      +|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|   ..+++|++|++++|++++ +|. +.. +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECCC
Confidence            78899999999886 776553  78999999999988 566   457889999999999987 777 443 899999999


Q ss_pred             cccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccC
Q 001036          843 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI  922 (1180)
Q Consensus       843 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  922 (1180)
                      |.+++ +|.    .+++|+.|++++|.+++ +|.   .+++|++|+|++|++++ +|. +.  ++|++|+|++|+|+ .+
T Consensus       130 N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          130 NQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            98886 665    57889999999999986 555   57889999999999886 666 55  88888888888888 44


Q ss_pred             CCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCcc
Q 001036          923 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 1002 (1180)
Q Consensus       923 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~ 1002 (1180)
                      |. |.. .+                                               ......|+.|+|++|+|+ .+|..
T Consensus       196 p~-~~~-~L-----------------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~  225 (571)
T 3cvr_A          196 PA-VPV-RN-----------------------------------------------HHSEETEIFFRCRENRIT-HIPEN  225 (571)
T ss_dssp             CC-CC--------------------------------------------------------CCEEEECCSSCCC-CCCGG
T ss_pred             hh-HHH-hh-----------------------------------------------hcccccceEEecCCCcce-ecCHH
Confidence            43 322 10                                               000123466666666666 45666


Q ss_pred             ccCCCCCCEEeCccccccccccccccCC
Q 001036         1003 IGNLTRIQTLNLSHNNLTGTIPLTFSNL 1030 (1180)
Q Consensus      1003 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l 1030 (1180)
                      +..+++|+.|+|++|.|++.+|..++.+
T Consensus       226 l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          226 ILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             GGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             HhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            6666666666666666666666665554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=9.3e-19  Score=183.55  Aligned_cols=156  Identities=22%  Similarity=0.273  Sum_probs=127.9

Q ss_pred             cEEECcCccCccccchhhhcCCCCCEEecCCCccccCCC-ccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCC
Q 001036          861 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS  939 (1180)
Q Consensus       861 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  939 (1180)
                      +.+++++|.++. +|..+.  +.+++|+|++|++++..| ..|..+++|++|+|++|++++..|..|.+++         
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~---------   81 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS---------   81 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC---------
Confidence            467778777774 555443  346788888888887654 4577888888888888888887777776543         


Q ss_pred             CCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccc
Q 001036          940 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 1019 (1180)
Q Consensus       940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1019 (1180)
                                                                  .|+.|+|++|++++..|..|+++++|++|+|++|+|
T Consensus        82 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  117 (220)
T 2v70_A           82 --------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI  117 (220)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred             --------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence                                                        688888889988888888889999999999999999


Q ss_pred             cccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCC
Q 001036         1020 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus      1020 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
                      ++..|..|.++++|+.|+|++|+|++..|..|..+++|+.|++++|++++..+
T Consensus       118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            98889999999999999999999998889999999999999999999988776

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=1.2e-18  Score=182.82  Aligned_cols=156  Identities=22%  Similarity=0.264  Sum_probs=138.8

Q ss_pred             cEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCC
Q 001036          861 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS  940 (1180)
Q Consensus       861 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~  940 (1180)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..|..+++|++|+|++|++++..|..|.+++          
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~----------   80 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR----------   80 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence            57899999998 4565543  6899999999999988888999999999999999999998888887644          


Q ss_pred             CCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcccccc
Q 001036          941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT 1020 (1180)
Q Consensus       941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1020 (1180)
                                                                 .|+.|+|++|+|++..+..|.++++|++|+|++|+|+
T Consensus        81 -------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           81 -------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             -------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence                                                       7999999999999776677899999999999999999


Q ss_pred             ccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCC
Q 001036         1021 GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus      1021 g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
                      +..|..|.++++|+.|+|++|+|++..|..|..++.|+.|++++|++.+..+
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            9999999999999999999999998888889999999999999999987544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=8.8e-19  Score=199.46  Aligned_cols=178  Identities=28%  Similarity=0.276  Sum_probs=127.0

Q ss_pred             cEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhh-cCCCCCEEecCCCccccCCCccccCCCCCCEEECc
Q 001036          836 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID-GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS  914 (1180)
Q Consensus       836 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  914 (1180)
                      +.++++++.+. .+|. .+.  +.++.|+|++|++++..+..|. ++++|++|+|++|+|++..|..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~-~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQ-SLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCS-SCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCc-cCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            56777777776 3565 222  3577788888888877777776 77888888888888877777777788888888888


Q ss_pred             CCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCc
Q 001036          915 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK  994 (1180)
Q Consensus       915 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  994 (1180)
                      +|++++..+..|.+++                                                     .|+.|+|++|+
T Consensus        97 ~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~  123 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQ-----------------------------------------------------ALEVLLLYNNH  123 (361)
T ss_dssp             SSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred             CCcCCcCCHHHhCCCc-----------------------------------------------------CCCEEECCCCc
Confidence            8887776666665433                                                     67778888888


Q ss_pred             ccCCCCccccCCCCCCEEeCccccccccccccc---cCCCCCCEEECcCCcCcccCCccccCCCC--CCEEEcCCCcCcc
Q 001036          995 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF---SNLRHIESLDLSYNKLSGKIPRQLVDLNT--LAIFIVAYNNLSG 1069 (1180)
Q Consensus       995 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~---~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~--L~~l~ls~N~l~g 1069 (1180)
                      |++..|..|.++++|+.|+|++|+|++..+..|   ..+++|+.|||++|+|++..+..+..++.  ++.|++++|++.+
T Consensus       124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            877777777777888888888888776544445   55777778888888777655566666665  3667777777765


Q ss_pred             c
Q 001036         1070 K 1070 (1180)
Q Consensus      1070 ~ 1070 (1180)
                      .
T Consensus       204 ~  204 (361)
T 2xot_A          204 D  204 (361)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=3.2e-18  Score=179.46  Aligned_cols=154  Identities=23%  Similarity=0.252  Sum_probs=131.5

Q ss_pred             cEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcC
Q 001036          836 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD  915 (1180)
Q Consensus       836 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  915 (1180)
                      +.++++++.++ .+|. .+.  ++++.|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~iP~-~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPT-NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCS-SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCC-ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            57888888876 4666 332  6889999999999988888899999999999999999988899999999999999999


Q ss_pred             CcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcc
Q 001036          916 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL  995 (1180)
Q Consensus       916 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  995 (1180)
                      |++++..+..|..++                                                     .|+.|+|++|+|
T Consensus        90 N~l~~l~~~~f~~l~-----------------------------------------------------~L~~L~L~~N~l  116 (220)
T 2v9t_B           90 NKITELPKSLFEGLF-----------------------------------------------------SLQLLLLNANKI  116 (220)
T ss_dssp             SCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCC
T ss_pred             CcCCccCHhHccCCC-----------------------------------------------------CCCEEECCCCCC
Confidence            999877666665533                                                     788999999999


Q ss_pred             cCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCccc
Q 001036          996 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 1046 (1180)
Q Consensus       996 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ 1046 (1180)
                      ++..|..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|++.+.
T Consensus       117 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            988888999999999999999999988888899999999999999998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=3e-18  Score=179.61  Aligned_cols=158  Identities=18%  Similarity=0.289  Sum_probs=142.3

Q ss_pred             CEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCC-CccCcccccccCCCCCCCCCCccccccCCCCCchhhhhh
Q 001036          885 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS-CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL  963 (1180)
Q Consensus       885 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  963 (1180)
                      +.+++++|.++ .+|..+.  ..+++|+|++|++++..|. .|..                                   
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~-----------------------------------   55 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKK-----------------------------------   55 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGG-----------------------------------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhcc-----------------------------------
Confidence            58999999998 4676654  4578999999999988653 4544                                   


Q ss_pred             hhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcC
Q 001036          964 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043 (1180)
Q Consensus       964 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1043 (1180)
                                        ++.|+.|+|++|+|++..|..|.++++|++|+|++|++++..|..|+++++|+.|+|++|+|
T Consensus        56 ------------------l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  117 (220)
T 2v70_A           56 ------------------LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI  117 (220)
T ss_dssp             ------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred             ------------------CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence                              33799999999999988888999999999999999999999999999999999999999999


Q ss_pred             cccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCCCC
Q 001036         1044 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 1098 (1180)
Q Consensus      1044 ~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l~ 1098 (1180)
                      ++..|..|..+++|++|++++|++++.+|..+..+..+....+.+||+.|.|++.
T Consensus       118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  172 (220)
T 2v70_A          118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA  172 (220)
T ss_dssp             CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred             CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence            9999999999999999999999999999988888889999999999999998754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.1e-17  Score=176.78  Aligned_cols=156  Identities=26%  Similarity=0.248  Sum_probs=113.6

Q ss_pred             CcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCC
Q 001036          860 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS  939 (1180)
Q Consensus       860 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  939 (1180)
                      -+.++.+++.++ .+|..+.  ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..++         
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~---------   88 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT---------   88 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC---------
Confidence            345666666665 3444332  5677777777777776677777777777777777777665555554433         


Q ss_pred             CCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccc
Q 001036          940 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 1019 (1180)
Q Consensus       940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1019 (1180)
                                                                  .|+.|||++|+|++..+..|..+++|++|+|++|+|
T Consensus        89 --------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           89 --------------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence                                                        677777777777766666677888888888888888


Q ss_pred             cccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCC
Q 001036         1020 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus      1020 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
                      + .+|..+..+++|+.|+|++|+|++..+..+..++.|+.|++++|++++..+
T Consensus       125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            8 677788888888888888888887666778888888888888888887665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=4.5e-18  Score=193.61  Aligned_cols=178  Identities=25%  Similarity=0.245  Sum_probs=139.1

Q ss_pred             CEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCccccc-CCCCCcEEECcCccCccccchhhhcCCCCCEEecCC
Q 001036          813 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFF-NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH  891 (1180)
Q Consensus       813 ~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  891 (1180)
                      +.++++++.++ .+|..+ +..++.|++++|.+++..+. .|. ++++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~-~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL-PSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC-CTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccC-CCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            57888888887 466543 44688888888888764443 676 888888888888888887778888888888888888


Q ss_pred             CccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccc
Q 001036          892 NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTK  971 (1180)
Q Consensus       892 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  971 (1180)
                      |++++..+..|..+++|++|+|++|++++..|..|.+++                                         
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-----------------------------------------  136 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-----------------------------------------  136 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----------------------------------------
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----------------------------------------
Confidence            888877777888888888888888888887777776543                                         


Q ss_pred             cchhcccchhccccceEEccCCcccCCCCccc---cCCCCCCEEeCccccccccccccccCCCC--CCEEECcCCcCccc
Q 001036          972 NIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI---GNLTRIQTLNLSHNNLTGTIPLTFSNLRH--IESLDLSYNKLSGK 1046 (1180)
Q Consensus       972 ~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~---~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~--L~~L~Ls~N~l~g~ 1046 (1180)
                                  .|+.|+|++|+|++..+..|   ..+++|+.|||++|+|++..+..|..++.  ++.|+|++|.+.+.
T Consensus       137 ------------~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          137 ------------QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             ------------TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             ------------cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence                        68888888888886444445   56888888888888888766677877776  47888888888754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=1.9e-17  Score=174.85  Aligned_cols=156  Identities=26%  Similarity=0.344  Sum_probs=140.6

Q ss_pred             CCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhh
Q 001036          884 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL  963 (1180)
Q Consensus       884 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  963 (1180)
                      .+.++.+++.++ .+|..+.  ++|++|+|++|++++..|..|.+++                                 
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~---------------------------------   64 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI---------------------------------   64 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT---------------------------------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc---------------------------------
Confidence            567999999987 5666554  8999999999999999888887644                                 


Q ss_pred             hhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcC
Q 001036          964 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043 (1180)
Q Consensus       964 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1043 (1180)
                                          .|+.|+|++|+|++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|
T Consensus        65 --------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           65 --------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             --------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence                                799999999999877777789999999999999999988888899999999999999999


Q ss_pred             cccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036         1044 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus      1044 ~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
                      + .+|..+..+++|++|++++|++++..+..+..+..+....+.+||+.|.|+
T Consensus       125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9 899999999999999999999998777767788889999999999999986

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1e-17  Score=201.67  Aligned_cols=168  Identities=24%  Similarity=0.353  Sum_probs=114.6

Q ss_pred             CCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccC
Q 001036          716 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK  795 (1180)
Q Consensus       716 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  795 (1180)
                      +..+.+..+.+....+  +..+++|+.|++++|.+... | .+..+++|+.|+|++|.+.+..|  +..+++|+.|++++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            4445566666654433  45677788888888877643 3 46777777777777777775443  67777777777777


Q ss_pred             CcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccc
Q 001036          796 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP  875 (1180)
Q Consensus       796 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  875 (1180)
                      |.+.+. | .+..+++|+.|++++|++.+                        ++  .+..+++|+.|+|++|.+++.  
T Consensus        97 N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~------------------------l~--~l~~l~~L~~L~Ls~N~l~~l--  146 (605)
T 1m9s_A           97 NKIKDL-S-SLKDLKKLKSLSLEHNGISD------------------------IN--GLVHLPQLESLYLGNNKITDI--  146 (605)
T ss_dssp             SCCCCC-T-TSTTCTTCCEEECTTSCCCC------------------------CG--GGGGCTTCSEEECCSSCCCCC--
T ss_pred             CCCCCC-h-hhccCCCCCEEEecCCCCCC------------------------Cc--cccCCCccCEEECCCCccCCc--
Confidence            777642 2 56666777777777776652                        11  366677788888888877764  


Q ss_pred             hhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCccc
Q 001036          876 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL  921 (1180)
Q Consensus       876 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  921 (1180)
                      ..+..+++|+.|+|++|++.+..|  +..+++|+.|+|++|++++.
T Consensus       147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence            567777777777777777776555  77777777777777777653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2e-17  Score=181.67  Aligned_cols=173  Identities=24%  Similarity=0.374  Sum_probs=136.5

Q ss_pred             cCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCE
Q 001036          807 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSH  886 (1180)
Q Consensus       807 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  886 (1180)
                      ..+++|+.|++++|.+.+                        ++  .+..+++|+.|++++|++++..|  +..+++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~------------------------~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~   94 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKS------------------------VQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW   94 (291)
T ss_dssp             HHHHTCCEEECTTSCCCC------------------------CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hhcCcccEEEccCCCccc------------------------Ch--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCE
Confidence            346667777777776652                        22  36678889999999999887655  888899999


Q ss_pred             EecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhh
Q 001036          887 LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIF  966 (1180)
Q Consensus       887 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  966 (1180)
                      |++++|++++ +| .+..+++|++|++++|++++.  ..+..                                      
T Consensus        95 L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~--------------------------------------  132 (291)
T 1h6t_A           95 LFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVH--------------------------------------  132 (291)
T ss_dssp             EECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGG--------------------------------------
T ss_pred             EECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcC--------------------------------------
Confidence            9999998875 33 488889999999999988763  12222                                      


Q ss_pred             hhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCccc
Q 001036          967 EFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 1046 (1180)
Q Consensus       967 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ 1046 (1180)
                                     ++.|+.|++++|++++.  ..++.+++|+.|++++|++++..|  ++.+++|+.|++++|++++ 
T Consensus       133 ---------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-  192 (291)
T 1h6t_A          133 ---------------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-  192 (291)
T ss_dssp             ---------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred             ---------------CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-
Confidence                           34788999999999865  578889999999999999997666  8889999999999999985 


Q ss_pred             CCccccCCCCCCEEEcCCCcCccc
Q 001036         1047 IPRQLVDLNTLAIFIVAYNNLSGK 1070 (1180)
Q Consensus      1047 ip~~l~~l~~L~~l~ls~N~l~g~ 1070 (1180)
                      +| .+..++.|+.|++++|+++..
T Consensus       193 l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          193 LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             Ch-hhccCCCCCEEECcCCcccCC
Confidence            44 488899999999999988863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=2.4e-17  Score=168.75  Aligned_cols=112  Identities=29%  Similarity=0.433  Sum_probs=76.6

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      .|+.|||++|+|++.+|..|+++++|++|+|++|+|++..|..|+++++|+.|+|++|+|++.+|..+..+++|++|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            56777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCcCcccCCC-cccccccCCccccCCCCCCCCCCC
Q 001036         1064 YNNLSGKIPE-WTAQFATFNKSSYDGNPFLCGLPL 1097 (1180)
Q Consensus      1064 ~N~l~g~ip~-~~~~~~~~~~~~~~~N~~lc~~~l 1097 (1180)
                      +|+++|.++. ++..  .+....+.++...|+.|.
T Consensus       135 ~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          135 SNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             TCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSST
T ss_pred             CCCccCcCcchHHHH--HHHHcCCCCCCCCCCCCh
Confidence            7777776653 1111  112223445555666553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=6.5e-20  Score=219.60  Aligned_cols=77  Identities=25%  Similarity=0.234  Sum_probs=45.0

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccc-cccccCCCCCCEEECcCCcCcccCCcc---ccCCCCCCE
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI-PLTFSNLRHIESLDLSYNKLSGKIPRQ---LVDLNTLAI 1059 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g~ip~~---l~~l~~L~~ 1059 (1180)
                      .|+.|+|++|+|++ +| .++++++|++|+|++|+|++.+ |..|+.+++|+.|+|++|++++.+|..   +..+++|+.
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            45555555555554 44 5666666666666666666655 666666666666666666666554422   223566666


Q ss_pred             EEc
Q 001036         1060 FIV 1062 (1180)
Q Consensus      1060 l~l 1062 (1180)
                      ||+
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=4.1e-17  Score=167.05  Aligned_cols=176  Identities=23%  Similarity=0.266  Sum_probs=119.6

Q ss_pred             cEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCc-cccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCC
Q 001036          861 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI-QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS  939 (1180)
Q Consensus       861 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  939 (1180)
                      +.+++++|.++ .+|..+..  +|++|++++|++++..+. .+..+++|++|+|++|++++..|..|.+++         
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------   78 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS---------   78 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc---------
Confidence            56777777775 45554432  677788888877766554 477788888888888888877777776543         


Q ss_pred             CCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccc
Q 001036          940 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 1019 (1180)
Q Consensus       940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1019 (1180)
                                                                  .|+.|+|++|+|++..|..|.++++|++|+|++|+|
T Consensus        79 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  114 (192)
T 1w8a_A           79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence                                                        678888888888888888888888999999999999


Q ss_pred             cccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036         1020 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus      1020 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
                      ++.+|..|+.+++|+.|+|++|++++..+.... ...++...+..+...+..|...   ....-.++..+.+.|..+
T Consensus       115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~~l---~~~~l~~l~~~~~~C~~~  187 (192)
T 1w8a_A          115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCCCCC
T ss_pred             CeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCChHH---cCCChhhCcHhhcCcCCC
Confidence            998899999999999999999999887663210 0011112333444444444422   222233455556666543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1.1e-16  Score=192.56  Aligned_cols=200  Identities=23%  Similarity=0.309  Sum_probs=168.5

Q ss_pred             cccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEE
Q 001036          688 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL  767 (1180)
Q Consensus       688 l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  767 (1180)
                      +..+..+.+..+.+...++.   ..+++|+.|++++|.+...  +.+..+++|+.|+|++|.+.+..|  +..+++|+.|
T Consensus        20 l~~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             HHHHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence            34456667788877744443   3578999999999999864  358899999999999999997665  8899999999


Q ss_pred             ECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccc
Q 001036          768 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG  847 (1180)
Q Consensus       768 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~  847 (1180)
                      +|++|.+.+ +| .+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|++++.                      
T Consensus        93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----------------------  146 (605)
T 1m9s_A           93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----------------------  146 (605)
T ss_dssp             ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----------------------
T ss_pred             ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----------------------
Confidence            999999985 44 789999999999999999863  4688899999999999988732                      


Q ss_pred             ccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCcc
Q 001036          848 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  927 (1180)
Q Consensus       848 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  927 (1180)
                         . .+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++.....+.
T Consensus       147 ---~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~  218 (605)
T 1m9s_A          147 ---T-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQS  218 (605)
T ss_dssp             ---G-GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred             ---h-hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccc
Confidence               1 57889999999999999998777  99999999999999999864  4689999999999999999876554444


Q ss_pred             C
Q 001036          928 N  928 (1180)
Q Consensus       928 ~  928 (1180)
                      .
T Consensus       219 ~  219 (605)
T 1m9s_A          219 N  219 (605)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=2.5e-16  Score=172.88  Aligned_cols=153  Identities=26%  Similarity=0.404  Sum_probs=90.5

Q ss_pred             ccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCC
Q 001036          734 IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ  813 (1180)
Q Consensus       734 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  813 (1180)
                      +..+++|++|++++|++++..+  +..+++|++|++++|.+++ +| .+..+++|++|++++|++++.  ..+..+++|+
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~  137 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE  137 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred             HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence            3444455555555555444332  4555555555555555543 22 255555666666666655542  3455566666


Q ss_pred             EEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCc
Q 001036          814 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN  893 (1180)
Q Consensus       814 ~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~  893 (1180)
                      .|++++|++++.                         . .+..+++|+.|++++|++++..|  +..+++|+.|++++|.
T Consensus       138 ~L~l~~n~l~~~-------------------------~-~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          138 SLYLGNNKITDI-------------------------T-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECCSSCCCCC-------------------------G-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEEccCCcCCcc-------------------------h-hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            666666665421                         1 45666777777777777776544  7777777777777777


Q ss_pred             cccCCCccccCCCCCCEEECcCCcCcccC
Q 001036          894 LEGEVPIQLCRLNQLQLLDLSDNNLHGLI  922 (1180)
Q Consensus       894 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  922 (1180)
                      +++ +| .+..+++|+.|++++|+++...
T Consensus       190 i~~-l~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          190 ISD-LR-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             CCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence            764 33 3677777777777777776543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=9.6e-17  Score=165.32  Aligned_cols=156  Identities=17%  Similarity=0.220  Sum_probs=126.6

Q ss_pred             ccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036          854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE  933 (1180)
Q Consensus       854 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  933 (1180)
                      ...+++|+.|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..|..++.++   
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---  112 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT---  112 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT---
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC---
Confidence            355678899999999988 555 6888999999999999665  345788899999999999999887777665533   


Q ss_pred             ccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEe
Q 001036          934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 1013 (1180)
Q Consensus       934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ 1013 (1180)
                                                                        .|+.|++++|++++..|..++.+++|++|+
T Consensus       113 --------------------------------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A          113 --------------------------------------------------SLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             --------------------------------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             --------------------------------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence                                                              788999999999988888899999999999


Q ss_pred             CccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcc
Q 001036         1014 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus      1014 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
                      +++|++.+.+| .++.+++|+.|++++|++++ +| .+..++.|+.|++++|++.+
T Consensus       143 L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          143 LSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             ccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            99998444566 68889999999999999985 44 78889999999999998764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.3e-16  Score=172.17  Aligned_cols=168  Identities=20%  Similarity=0.247  Sum_probs=137.4

Q ss_pred             ccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECc
Q 001036          835 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS  914 (1180)
Q Consensus       835 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  914 (1180)
                      +..+++++|.+.+ ++  .+..+++|+.|++++|.++. +| .++.+++|++|++++|++++..+  +..+++|++|+++
T Consensus        21 l~~l~l~~~~i~~-~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVTD-LV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTTS-EE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHhcCCCccc-cc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3344455555442 22  46778899999999999984 45 68899999999999999997555  8999999999999


Q ss_pred             CCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCc
Q 001036          915 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK  994 (1180)
Q Consensus       915 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  994 (1180)
                      +|++++..+...                                                        +.|+.|+|++|+
T Consensus        94 ~N~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~N~  117 (263)
T 1xeu_A           94 RNRLKNLNGIPS--------------------------------------------------------ACLSRLFLDNNE  117 (263)
T ss_dssp             SSCCSCCTTCCC--------------------------------------------------------SSCCEEECCSSC
T ss_pred             CCccCCcCcccc--------------------------------------------------------CcccEEEccCCc
Confidence            999986432111                                                        268999999999


Q ss_pred             ccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccC
Q 001036          995 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 1071 (1180)
Q Consensus       995 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~i 1071 (1180)
                      +++. | .++.+++|+.|+|++|++++. | .++.+++|+.|+|++|++++.  ..+..++.|+.|++++|++++..
T Consensus       118 l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          118 LRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             cCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            9963 4 599999999999999999975 4 689999999999999999976  77899999999999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=2.5e-18  Score=205.96  Aligned_cols=184  Identities=20%  Similarity=0.275  Sum_probs=141.3

Q ss_pred             cCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCcc-------------Cccc
Q 001036          807 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY-------------LNGS  873 (1180)
Q Consensus       807 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-------------l~~~  873 (1180)
                      ...+.|+.|++++|++. .                       +|. .+.++++|+.|++++|.             +.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~-----------------------Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~  400 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-V-----------------------LQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLY  400 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-H-----------------------HHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG
T ss_pred             ccCccceeccCChhhHH-h-----------------------hHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccC
Confidence            34567777777777775 3                       343 45555566666665553             5667


Q ss_pred             cchhhhcCCCCCEEe-cCCCccccCCCc-----cccC--CCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCC
Q 001036          874 IPDWIDGLSQLSHLN-LAHNNLEGEVPI-----QLCR--LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF  945 (1180)
Q Consensus       874 ~p~~~~~l~~L~~L~-L~~N~l~~~~p~-----~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~  945 (1180)
                      +|..++++++|+.|+ ++.|.+......     .+..  ...|+.|+|++|++++ +|. |+++                
T Consensus       401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l----------------  462 (567)
T 1dce_A          401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQL----------------  462 (567)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGG----------------
T ss_pred             CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-cccc----------------
Confidence            778888888888887 555543211000     0110  1358999999999997 454 5543                


Q ss_pred             ccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccc
Q 001036          946 KTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL 1025 (1180)
Q Consensus       946 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 1025 (1180)
                                                           +.|+.|||++|+|+ .+|..|+++++|+.|+|++|+|++ +| 
T Consensus       463 -------------------------------------~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-  502 (567)
T 1dce_A          463 -------------------------------------LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-  502 (567)
T ss_dssp             -------------------------------------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-
T ss_pred             -------------------------------------ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-
Confidence                                                 37999999999999 889999999999999999999997 67 


Q ss_pred             cccCCCCCCEEECcCCcCcccC-CccccCCCCCCEEEcCCCcCcccCCC
Q 001036         1026 TFSNLRHIESLDLSYNKLSGKI-PRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus      1026 ~~~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      .|+++++|+.|+|++|+|++.+ |..+..++.|+.|++++|++++.+|.
T Consensus       503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            8999999999999999999887 99999999999999999999998775

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=2.5e-17  Score=203.90  Aligned_cols=216  Identities=19%  Similarity=0.160  Sum_probs=100.4

Q ss_pred             ccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCC---------CCcccccCCCCCCeEEccCCcCCCCCCccccC
Q 001036          738 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG---------KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR  808 (1180)
Q Consensus       738 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~---------~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  808 (1180)
                      +.++.|+|.+|.+... +..     .|+.++|+.|.+.+         ..|..+..++.|+.|+|++|.+. .+|..+..
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~  245 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFK  245 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGG
T ss_pred             CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcC
Confidence            5677888888877753 332     23444444444432         23444455555555555555554 34444444


Q ss_pred             CCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEe
Q 001036          809 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLN  888 (1180)
Q Consensus       809 l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  888 (1180)
                      +++|++|+|++|.++                        .+|. .|.++++|+.|+|++|.|+ .+|..|+++++|++|+
T Consensus       246 l~~L~~L~Ls~N~l~------------------------~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLT------------------------ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCSCSCCBCTTSCCS------------------------CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred             CCCCCEEEeeCCcCc------------------------ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence            555555555555444                        4554 6788888999999999988 6788888899999999


Q ss_pred             cCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhh
Q 001036          889 LAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEF  968 (1180)
Q Consensus       889 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  968 (1180)
                      |++|.|+ .+|..|+.+++|++|+|++|+|++.+|..+.....                                     
T Consensus       300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-------------------------------------  341 (727)
T 4b8c_D          300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV-------------------------------------  341 (727)
T ss_dssp             CCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-------------------------------------
T ss_pred             CCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch-------------------------------------
Confidence            9999887 67878888999999999999998887776644220                                     


Q ss_pred             ccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccc--------cccccccccccCCCCCCEEECcC
Q 001036          969 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN--------NLTGTIPLTFSNLRHIESLDLSY 1040 (1180)
Q Consensus       969 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N--------~l~g~~p~~~~~l~~L~~L~Ls~ 1040 (1180)
                                     ....++|++|.++|.+|..      |+.|++++|        .+++.++..+.++..++...+++
T Consensus       342 ---------------~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~  400 (727)
T 4b8c_D          342 ---------------TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY  400 (727)
T ss_dssp             ---------------HHHHHHHHHCCCCCCCCCC----------------------------------------------
T ss_pred             ---------------hhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence                           1223678888888888864      456667776        45555555556666666677777


Q ss_pred             CcCcc
Q 001036         1041 NKLSG 1045 (1180)
Q Consensus      1041 N~l~g 1045 (1180)
                      |.+.+
T Consensus       401 Nil~~  405 (727)
T 4b8c_D          401 NTLCQ  405 (727)
T ss_dssp             -CCCG
T ss_pred             ccccc
Confidence            76653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=3.3e-17  Score=202.79  Aligned_cols=184  Identities=21%  Similarity=0.181  Sum_probs=99.3

Q ss_pred             CCCCEEEccCCcccccccccccCCccCce-----eeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCC
Q 001036          714 VNLEFLSLSNNSLKGHIFSRIFSLRNLRW-----LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGL  788 (1180)
Q Consensus       714 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-----L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  788 (1180)
                      +.++.|++.+|.+... +..+.....|..     +++..|.+. ..|..+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            4566777777776653 222222222222     222223332 34666777777888888877776 666666677778


Q ss_pred             CeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCc
Q 001036          789 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN  868 (1180)
Q Consensus       789 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n  868 (1180)
                      ++|+|++|.++ .+|..|..+++|++|+|++|+++ .+|.                        .|.++++|+.|+|++|
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~------------------------~~~~l~~L~~L~L~~N  303 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA------------------------ELGSCFQLKYFYFFDN  303 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS------------------------SGGGGTTCSEEECCSS
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh------------------------hhcCCCCCCEEECCCC
Confidence            88888888777 67777777777777777777776 3332                        5666777778888887


Q ss_pred             cCccccchhhhcCCCCCEEecCCCccccCCCccccCCCC-CCEEECcCCcCcccCCCCcc
Q 001036          869 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ-LQLLDLSDNNLHGLIPSCFD  927 (1180)
Q Consensus       869 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~  927 (1180)
                      .|+ .+|..|+.+++|++|+|++|++++.+|..+..+.. +..++|++|.++|.+|..+.
T Consensus       304 ~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~  362 (727)
T 4b8c_D          304 MVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR  362 (727)
T ss_dssp             CCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred             CCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence            776 56666777778888888888877777776654322 22367777777777766543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=4.1e-16  Score=168.29  Aligned_cols=174  Identities=20%  Similarity=0.241  Sum_probs=111.7

Q ss_pred             CCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEc
Q 001036          714 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM  793 (1180)
Q Consensus       714 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  793 (1180)
                      .++..+++++|.+++..  .+..+++|++|++++|.++. +| .+..+++|++|++++|++++..|  +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            34445555555555332  34555556666666655553 23 45555555555555555553322  555555555555


Q ss_pred             cCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccc
Q 001036          794 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS  873 (1180)
Q Consensus       794 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  873 (1180)
                      ++|++++.                         |.... .+|+.|++++|.+++ ++  .+..+++|+.|++++|++++.
T Consensus        93 ~~N~l~~l-------------------------~~~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A           93 NRNRLKNL-------------------------NGIPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             CSSCCSCC-------------------------TTCCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBC
T ss_pred             CCCccCCc-------------------------Ccccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCC
Confidence            55555432                         22111 444455555554443 22  588899999999999999975


Q ss_pred             cchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCc
Q 001036          874 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF  926 (1180)
Q Consensus       874 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  926 (1180)
                       | .++.+++|++|++++|++++.  ..+..+++|+.|++++|++++.....+
T Consensus       144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~~~  192 (263)
T 1xeu_A          144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQ  192 (263)
T ss_dssp             -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCEECC
T ss_pred             -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCccccc
Confidence             4 689999999999999999976  678899999999999999987744433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.62  E-value=1.3e-15  Score=156.85  Aligned_cols=152  Identities=15%  Similarity=0.144  Sum_probs=103.2

Q ss_pred             CCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCcee
Q 001036          664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL  743 (1180)
Q Consensus       664 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  743 (1180)
                      +++|+.|++++|.++ .+| .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+++..+..+..+++|++|
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            456666666666666 334 4666667777777777554 333 2 2356777777777777776667777777777777


Q ss_pred             eccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCccc
Q 001036          744 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS  823 (1180)
Q Consensus       744 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  823 (1180)
                      ++++|.+++..|..++.+++|++|++++|.+.+.+| .+..+++|++|++++|++++. + .+..+++|+.|++++|++.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence            777777777667777777788888888777223455 577778888888888877753 3 6677788888888888765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=1.5e-15  Score=152.00  Aligned_cols=62  Identities=27%  Similarity=0.324  Sum_probs=33.9

Q ss_pred             CCCcEEECcCccCc-cccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCccc
Q 001036          858 SSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL  921 (1180)
Q Consensus       858 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  921 (1180)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~   86 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG   86 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH
Confidence            45566666666655 45555555555566665555555543  4445555555555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=3.5e-15  Score=167.51  Aligned_cols=76  Identities=16%  Similarity=0.070  Sum_probs=39.5

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCC-EEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 1061 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~-~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ 1061 (1180)
                      +|+.|+|++| ++..-+.+|.++++|+ .+++++ +++.+-+.+|.++++|+.+++++|+++...+.+|.++++|+.++
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            3444444444 4433344455555555 555555 45544445555555555555555555544445555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=4.4e-15  Score=151.67  Aligned_cols=114  Identities=23%  Similarity=0.378  Sum_probs=99.9

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      .++.|+|++|+|+ .+|..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..|..|..+++|++|+++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            5788999999998 788889999999999999999998888889999999999999999998888889999999999999


Q ss_pred             CCcCcccCCCcccccccCCccccCCCCCCCCCCCC
Q 001036         1064 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 1098 (1180)
Q Consensus      1064 ~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l~ 1098 (1180)
                      +|++++..+..+..+..+....+.+||+.|+|.+.
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~  145 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ  145 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence            99999766666677788888889999999988654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=1.7e-15  Score=170.12  Aligned_cols=283  Identities=16%  Similarity=0.124  Sum_probs=139.2

Q ss_pred             CCcccEEEccCCcccCCCCCCCCC-CCCccEEEccCCcccc-cCChhhhhcCCCCcEEEccCCcCCccCCccccC-----
Q 001036          615 NTKLEFLYLVNDSLAGPFRLPIHS-HKRLRFLDVSNNNFQG-HIPVEIGDILPSLVYFNISMNALDGSIPSSFGN-----  687 (1180)
Q Consensus       615 ~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~n~l~~-~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~-----  687 (1180)
                      ..+++.|.++++--... ...+.. +++|+.||+++|++.. ..+...   ++.+..+.+..|.   +.+.+|.+     
T Consensus        24 ~~~l~~L~l~g~i~~~~-~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAED-FRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEEECHHH-HHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred             hCceeEEEEeccccHHH-HHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccc---cCHHHhccccccc
Confidence            44566777765321100 001111 5667777777777651 001111   1223334444442   23345555     


Q ss_pred             ---cccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCc----ccccCCCcCCC
Q 001036          688 ---VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH----FVGEIPQSLSK  760 (1180)
Q Consensus       688 ---l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~p~~~~~  760 (1180)
                         +++|+.+++.+ .++ .|++..|.+|++|+.+++++|.+....+.+|.++.++..+.+..+.    .....+..|.+
T Consensus        97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence               77777777777 666 6777777777777777777777776666777776666666655532    12223344555


Q ss_pred             CCCCc-EEECcCCcCCCCCccccc----CCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCC-Cc
Q 001036          761 CSSLK-GLYLNNNNLSGKIPRWLG----NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP-LS  834 (1180)
Q Consensus       761 l~~L~-~L~l~~n~l~~~~p~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-~~  834 (1180)
                      +..|+ .+.+....   .++..+.    ...+++.+.+.++-...........+++|+.+++++|+++...+.+|.. .+
T Consensus       175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~  251 (329)
T 3sb4_A          175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY  251 (329)
T ss_dssp             SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred             ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence            56665 44443221   1222111    2334444544443111000001113567777777777766322222221 23


Q ss_pred             ccEEEcCCcccccccCcccccCCCCCc-EEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEE
Q 001036          835 IKQVHLSKNMLHGQLKEGTFFNCSSLV-TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD  912 (1180)
Q Consensus       835 L~~L~l~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  912 (1180)
                      |+.+++.+| + ..++..+|.+|++|+ .+++.+ .++.+.+..|.+|++|+.+++++|+++...+.+|.++++|+.++
T Consensus       252 L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          252 LLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCEEECCcc-c-ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            333333333 1 134444555555555 555555 44444445555555555555555555544455555555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=2.9e-15  Score=149.94  Aligned_cols=137  Identities=22%  Similarity=0.236  Sum_probs=119.7

Q ss_pred             CCCCCEEecCCCccc-cCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchh
Q 001036          881 LSQLSHLNLAHNNLE-GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVE  959 (1180)
Q Consensus       881 l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  959 (1180)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..                               
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------   69 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK-------------------------------   69 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence            478999999999998 78899999999999999999999876  44443                               


Q ss_pred             hhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccc-cccccCCCCCCEEEC
Q 001036          960 KKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI-PLTFSNLRHIESLDL 1038 (1180)
Q Consensus       960 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~L 1038 (1180)
                                            ++.|+.|+|++|++++.+|..+.++++|++|+|++|++++.. +..++.+++|+.|++
T Consensus        70 ----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           70 ----------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             ----------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             ----------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence                                  337999999999999889988889999999999999999753 378999999999999


Q ss_pred             cCCcCcccCC---ccccCCCCCCEEEcCCCcCcccCCC
Q 001036         1039 SYNKLSGKIP---RQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus      1039 s~N~l~g~ip---~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      ++|++++..+   ..+..++.|++|++++|.+. .+|.
T Consensus       128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            9999997665   58999999999999999987 4443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=1e-14  Score=147.36  Aligned_cols=89  Identities=24%  Similarity=0.251  Sum_probs=65.9

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      .|+.|++++|++++..+..|+++++|++|+|++|++++..|..|+++++|+.|++++|++++..+..+..++.|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            56667777777766555566777777777777777777766677777788888888888876555556777788888888


Q ss_pred             CCcCcccCC
Q 001036         1064 YNNLSGKIP 1072 (1180)
Q Consensus      1064 ~N~l~g~ip 1072 (1180)
                      +|+++|.+|
T Consensus       133 ~N~~~~~~~  141 (177)
T 2o6r_A          133 TNPWDCSCP  141 (177)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCeeccCc
Confidence            888877766

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.1e-14  Score=148.80  Aligned_cols=88  Identities=30%  Similarity=0.312  Sum_probs=59.7

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      .|+.|||++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++.|+.|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            45556666666665555666666777777777777776666677777777777777777775555567777777777777


Q ss_pred             CCcCcccC
Q 001036         1064 YNNLSGKI 1071 (1180)
Q Consensus      1064 ~N~l~g~i 1071 (1180)
                      +|++.+..
T Consensus       135 ~N~~~C~c  142 (193)
T 2wfh_A          135 ANPLYCDC  142 (193)
T ss_dssp             SSCEECSG
T ss_pred             CCCeecCC
Confidence            77776544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.1e-15  Score=147.45  Aligned_cols=80  Identities=23%  Similarity=0.213  Sum_probs=54.0

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCcccccccc-ccccccCCCCCCEEECcCCcCcccCC---ccccCCCCCCE
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT-IPLTFSNLRHIESLDLSYNKLSGKIP---RQLVDLNTLAI 1059 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~ip---~~l~~l~~L~~ 1059 (1180)
                      .|+.||+++|++++.+|..++.+++|++|++++|++++. .|..++.+++|+.|++++|++++..+   ..+..+++|++
T Consensus        65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence            566666666666665666666667777777777777753 34667777777777777777776555   46677777777


Q ss_pred             EEcC
Q 001036         1060 FIVA 1063 (1180)
Q Consensus      1060 l~ls 1063 (1180)
                      ||++
T Consensus       145 L~l~  148 (149)
T 2je0_A          145 LDGY  148 (149)
T ss_dssp             ETTB
T ss_pred             ccCC
Confidence            7665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=1.4e-14  Score=146.18  Aligned_cols=133  Identities=27%  Similarity=0.277  Sum_probs=105.6

Q ss_pred             CcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCC
Q 001036          860 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS  939 (1180)
Q Consensus       860 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~  939 (1180)
                      .+.+++++|+++. +|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..|++++         
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------   76 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT---------   76 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT---------
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC---------
Confidence            3567777777763 44333  35788888888888876667778888888888888888876666665433         


Q ss_pred             CCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccc
Q 001036          940 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 1019 (1180)
Q Consensus       940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1019 (1180)
                                                                  .|+.|+|++|++++..+..+.++++|++|+|++|++
T Consensus        77 --------------------------------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  112 (177)
T 2o6r_A           77 --------------------------------------------KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL  112 (177)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence                                                        688899999999877777788999999999999999


Q ss_pred             cccccccccCCCCCCEEECcCCcCcccCC
Q 001036         1020 TGTIPLTFSNLRHIESLDLSYNKLSGKIP 1048 (1180)
Q Consensus      1020 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip 1048 (1180)
                      ++..+..|..+++|+.|+|++|++++..|
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            97777778889999999999999998766

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.55  E-value=9.8e-14  Score=158.56  Aligned_cols=239  Identities=12%  Similarity=0.088  Sum_probs=121.1

Q ss_pred             CccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEE
Q 001036          641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS  720 (1180)
Q Consensus       641 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~  720 (1180)
                      +|+.+++..+ ++ .|+...|.. .+|+.+.+.. .++.+.+.+|.+|.+|+.+++++|+++ .++...|. +.+|+.+.
T Consensus       136 ~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~  209 (401)
T 4fdw_A          136 QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVL  209 (401)
T ss_dssp             CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEE
T ss_pred             CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEE
Confidence            4566665544 33 455555543 3566666664 555555666666777777777666666 66666654 46666666


Q ss_pred             ccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCC-
Q 001036          721 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE-  799 (1180)
Q Consensus       721 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-  799 (1180)
                      +..+ ++.+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++..-+.+|.++++|+.+++.+|.+. 
T Consensus       210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~  285 (401)
T 4fdw_A          210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND  285 (401)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred             eCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC
Confidence            6533 55555555666666666666553 33334444544 455555552 2333233344444555555554444332 


Q ss_pred             ----CCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccc
Q 001036          800 ----GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP  875 (1180)
Q Consensus       800 ----~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  875 (1180)
                          ...+.+|.++++|+.+++.+ .+.                        .++..+|.+|++|+.+++..| ++.+-+
T Consensus       286 ~~~~~I~~~aF~~c~~L~~l~l~~-~i~------------------------~I~~~aF~~c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          286 DPEAMIHPYCLEGCPKLARFEIPE-SIR------------------------ILGQGLLGGNRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             CTTCEECTTTTTTCTTCCEECCCT-TCC------------------------EECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred             CcccEECHHHhhCCccCCeEEeCC-ceE------------------------EEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence                12233344444444444331 121                        233335555555555555333 443444


Q ss_pred             hhhhcCCCCCEEecCCCccccCCCccccCCC-CCCEEECcCC
Q 001036          876 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN-QLQLLDLSDN  916 (1180)
Q Consensus       876 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N  916 (1180)
                      .+|.++ +|+.+++.+|.+....+..|.+++ .++.|.+..+
T Consensus       340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            455555 555555555555444444444442 4445544443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=3.3e-15  Score=146.08  Aligned_cols=128  Identities=26%  Similarity=0.292  Sum_probs=102.3

Q ss_pred             CCCcEEECcCccCc-cccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccC
Q 001036          858 SSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN  936 (1180)
Q Consensus       858 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  936 (1180)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..        
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--------   86 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK--------   86 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh--------
Confidence            57888888888887 67777788888888888888888765  67788888888888888888766554433        


Q ss_pred             CCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCC-CCccccCCCCCCEEeCc
Q 001036          937 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH-IPPQIGNLTRIQTLNLS 1015 (1180)
Q Consensus       937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-~p~~~~~l~~L~~L~Ls 1015 (1180)
                                                                   ++.|+.|++++|++++. .|..++.+++|++|+++
T Consensus        87 ---------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~  121 (149)
T 2je0_A           87 ---------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF  121 (149)
T ss_dssp             ---------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred             ---------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence                                                         33688888888888863 34788899999999999


Q ss_pred             ccccccccc---ccccCCCCCCEEECcC
Q 001036         1016 HNNLTGTIP---LTFSNLRHIESLDLSY 1040 (1180)
Q Consensus      1016 ~N~l~g~~p---~~~~~l~~L~~L~Ls~ 1040 (1180)
                      +|.+++..+   ..++.+++|+.||+++
T Consensus       122 ~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          122 NCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999997766   5788899999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.52  E-value=3.8e-13  Score=153.68  Aligned_cols=265  Identities=13%  Similarity=0.153  Sum_probs=167.1

Q ss_pred             CCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEE
Q 001036          713 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV  792 (1180)
Q Consensus       713 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  792 (1180)
                      +..++.+.+.. .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+...-+.+|.++++|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            45566666653 3444445555553 5666666555 444444555553 466665553 33323334444555555555


Q ss_pred             ccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCcc
Q 001036          793 MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG  872 (1180)
Q Consensus       793 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  872 (1180)
                      +.+|.++                        ..-..+|...+++.+.+..+ + ..++..+|.+|++|+.+++..| ++.
T Consensus       187 l~~n~l~------------------------~I~~~aF~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~  239 (401)
T 4fdw_A          187 LSKTKIT------------------------KLPASTFVYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VST  239 (401)
T ss_dssp             CTTSCCS------------------------EECTTTTTTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred             cCCCcce------------------------EechhhEeecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccC
Confidence            5544444                        33333333444444444433 2 2566668999999999999875 665


Q ss_pred             ccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCc-----ccCCCCccCcccccccCCCCCCCCCCcc
Q 001036          873 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH-----GLIPSCFDNTTLHESYNNNSSPDKPFKT  947 (1180)
Q Consensus       873 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~  947 (1180)
                      +....|.+ .+|+.+.+ .+.++...+.+|.++++|+.+++.+|.+.     ...+.+|.++                  
T Consensus       240 I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c------------------  299 (401)
T 4fdw_A          240 IGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC------------------  299 (401)
T ss_dssp             ECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC------------------
T ss_pred             cccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC------------------
Confidence            66777877 78999988 45566666778889999999998888765     2333344433                  


Q ss_pred             ccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccc
Q 001036          948 SFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF 1027 (1180)
Q Consensus       948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~ 1027 (1180)
                                                         ++|+.++|. |.++..-..+|.++++|+.++|..| ++..-+.+|
T Consensus       300 -----------------------------------~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          300 -----------------------------------PKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             -----------------------------------TTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred             -----------------------------------ccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence                                               367777777 4466555667888888888888554 666667778


Q ss_pred             cCCCCCCEEECcCCcCcccCCccccCCC-CCCEEEcCCCcC
Q 001036         1028 SNLRHIESLDLSYNKLSGKIPRQLVDLN-TLAIFIVAYNNL 1067 (1180)
Q Consensus      1028 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-~L~~l~ls~N~l 1067 (1180)
                      .++ +|+.+++++|.+....+..|.+++ .+..+.+..|.+
T Consensus       343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            888 888888888887766666677664 566776665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.51  E-value=5.4e-13  Score=153.66  Aligned_cols=237  Identities=15%  Similarity=0.177  Sum_probs=125.8

Q ss_pred             CcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcc
Q 001036          756 QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSI  835 (1180)
Q Consensus       756 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L  835 (1180)
                      .+|.+|++|+.+.+.++.. ..-...|.++++|+.+.+..+ ++.....+|.++..|+.+.+..+... .-...+....+
T Consensus       156 ~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l  232 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGV  232 (394)
T ss_dssp             TTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCC
T ss_pred             hhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCC
Confidence            4555555666665544322 123344555566666655544 33233445556666665555444322 11122333445


Q ss_pred             cEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcC
Q 001036          836 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD  915 (1180)
Q Consensus       836 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  915 (1180)
                      +.+.+....  ..+....|.++..++.+.+..+... .....|..+..++.+....+.+   ....|..+.+|+.+.+.+
T Consensus       233 ~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          233 KNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             CEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT
T ss_pred             ceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccccccccccccccc
Confidence            555544321  1344456777777777777766443 5556677777777776665543   234566677777776654


Q ss_pred             CcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcc
Q 001036          916 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL  995 (1180)
Q Consensus       916 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  995 (1180)
                      + ++..-+.+|.+++                                                     +|+.+++..+ +
T Consensus       307 ~-i~~I~~~aF~~c~-----------------------------------------------------~L~~i~lp~~-v  331 (394)
T 4fs7_A          307 S-VKFIGEEAFESCT-----------------------------------------------------SLVSIDLPYL-V  331 (394)
T ss_dssp             T-CCEECTTTTTTCT-----------------------------------------------------TCCEECCCTT-C
T ss_pred             c-cceechhhhcCCC-----------------------------------------------------CCCEEEeCCc-c
Confidence            3 4433334444332                                                     4555666433 4


Q ss_pred             cCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCE
Q 001036          996 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 1059 (1180)
Q Consensus       996 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~ 1059 (1180)
                      +..-..+|.++++|+.+++..| ++..-..+|.++.+|+.+++..+ ++ .+..+|.+.+.|+.
T Consensus       332 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          332 EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred             cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence            4333455666666666666655 55444556666666666666544 22 23445555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.49  E-value=1.1e-12  Score=151.13  Aligned_cols=333  Identities=14%  Similarity=0.157  Sum_probs=186.9

Q ss_pred             cCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccc
Q 001036          606 EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF  685 (1180)
Q Consensus       606 ~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~  685 (1180)
                      .++...|.+|++|+.+.+.++ ++.....+|..+++|+.+++.++ ++ .++...+..+++|+.+.+..+ +......+|
T Consensus        61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF  136 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF  136 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence            455556677777777777543 55444566777777777777654 33 566666666677776666543 444555566


Q ss_pred             cCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCc
Q 001036          686 GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLK  765 (1180)
Q Consensus       686 ~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  765 (1180)
                      .++..++.......  . .+....|.++.+|+.+.+..+. .......|.++++|+.+.+..+ +..+...+|.++..|+
T Consensus       137 ~~~~~~~~~~~~~~--~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~  211 (394)
T 4fs7_A          137 KGCDFKEITIPEGV--T-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE  211 (394)
T ss_dssp             TTCCCSEEECCTTC--C-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred             ecccccccccCccc--c-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence            66654443332222  2 4555566677777777776543 3345566777777777777665 4445556677777777


Q ss_pred             EEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccc
Q 001036          766 GLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNML  845 (1180)
Q Consensus       766 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~  845 (1180)
                      .+.+..+...  +........+|+.+.+... .+......|.++..|+.+.+..+...                      
T Consensus       212 ~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~----------------------  266 (394)
T 4fs7_A          212 NMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR----------------------  266 (394)
T ss_dssp             BCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE----------------------
T ss_pred             eeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce----------------------
Confidence            7766655432  2233334566777766543 22233445666666776666555332                      


Q ss_pred             ccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCC
Q 001036          846 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC  925 (1180)
Q Consensus       846 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  925 (1180)
                         +....|.++..++.+....+.+   ....|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.++ ++..-..+
T Consensus       267 ---i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a  338 (394)
T 4fs7_A          267 ---IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS  338 (394)
T ss_dssp             ---ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred             ---eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence               2333455555555555544332   1234555556666555543 33333445556666666665433 44333344


Q ss_pred             ccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccC
Q 001036          926 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN 1005 (1180)
Q Consensus       926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~ 1005 (1180)
                      |.+++                                                     +|+.+++..| ++..-..+|.+
T Consensus       339 F~~c~-----------------------------------------------------~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          339 FRGCT-----------------------------------------------------SLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             TTTCT-----------------------------------------------------TCCEECCCTT-CCEECTTTBTT
T ss_pred             ccCCC-----------------------------------------------------CCCEEEECcc-ccEehHHHhhC
Confidence            44333                                                     4555555544 44334456777


Q ss_pred             CCCCCEEeCccccccccccccccCCCCCCEE
Q 001036         1006 LTRIQTLNLSHNNLTGTIPLTFSNLRHIESL 1036 (1180)
Q Consensus      1006 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L 1036 (1180)
                      +++|+.+++..+ ++ .+...|.+.++|+.+
T Consensus       365 C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          365 CINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            777777777654 33 344567766666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=5e-16  Score=160.07  Aligned_cols=155  Identities=25%  Similarity=0.290  Sum_probs=121.9

Q ss_pred             ccCCCCCcEEECcCccCccccch------hhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCcc
Q 001036          854 FFNCSSLVTLDLSYNYLNGSIPD------WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  927 (1180)
Q Consensus       854 ~~~~~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  927 (1180)
                      +.....++.++++.+.+++.+|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|+++. +|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhh
Confidence            44456777777888888777776      88999999999999999986 66 88888999999999998873 443332


Q ss_pred             CcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCC
Q 001036          928 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT 1007 (1180)
Q Consensus       928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~ 1007 (1180)
                      .                                                     ++.|+.|+|++|++++ +| .++.++
T Consensus        91 ~-----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~  115 (198)
T 1ds9_A           91 V-----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLV  115 (198)
T ss_dssp             H-----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred             c-----------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCC
Confidence            2                                                     3478899999999986 45 688888


Q ss_pred             CCCEEeCcccccccccc-ccccCCCCCCEEECcCCcCcccCCcc----------ccCCCCCCEEEcCCCcCc
Q 001036         1008 RIQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKLSGKIPRQ----------LVDLNTLAIFIVAYNNLS 1068 (1180)
Q Consensus      1008 ~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~ip~~----------l~~l~~L~~l~ls~N~l~ 1068 (1180)
                      +|++|++++|++++..+ ..+..+++|+.|++++|++++.+|..          +..++.|+.||  +|.++
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            99999999999986443 57888999999999999998887764          77888888887  55554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=7.9e-14  Score=140.43  Aligned_cols=66  Identities=18%  Similarity=0.195  Sum_probs=36.7

Q ss_pred             cccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCccc
Q 001036          853 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL  921 (1180)
Q Consensus       853 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  921 (1180)
                      .+.++++|+.|++++|+++. +|......++|++|++++|.+++.  ..+..+++|++|++++|++++.
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~   79 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI   79 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE
T ss_pred             hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccccc
Confidence            35566677777777777663 343222233666666666666543  3455555555555555555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=9.4e-14  Score=139.88  Aligned_cols=135  Identities=17%  Similarity=0.177  Sum_probs=109.8

Q ss_pred             hhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCC
Q 001036          877 WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQG  956 (1180)
Q Consensus       877 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  956 (1180)
                      .+.++++|+.|++++|+++. +|......++|++|++++|++++.  ..|..                            
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~----------------------------   62 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPL----------------------------   62 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCC----------------------------
T ss_pred             hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--ccccc----------------------------
Confidence            45678899999999999984 455333344999999999999875  34433                            


Q ss_pred             chhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccc--cccCCCCCC
Q 001036          957 SVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL--TFSNLRHIE 1034 (1180)
Q Consensus       957 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~--~~~~l~~L~ 1034 (1180)
                                               ++.|+.|+|++|+|++..|..++.+++|++|+|++|+++ .+|.  .++.+++|+
T Consensus        63 -------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           63 -------------------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLT  116 (176)
T ss_dssp             -------------------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred             -------------------------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCC
Confidence                                     337999999999999765565699999999999999996 5666  889999999


Q ss_pred             EEECcCCcCcccCCcc----ccCCCCCCEEEcCCCcCcc
Q 001036         1035 SLDLSYNKLSGKIPRQ----LVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus      1035 ~L~Ls~N~l~g~ip~~----l~~l~~L~~l~ls~N~l~g 1069 (1180)
                      .|++++|+++ .+|..    +..++.|++||+++|....
T Consensus       117 ~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          117 YLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999999998 56664    8899999999999997763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=5e-13  Score=133.32  Aligned_cols=90  Identities=22%  Similarity=0.228  Sum_probs=83.7

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      .++.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..|..|..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            68899999999999889999999999999999999998888889999999999999999998878889999999999999


Q ss_pred             CCcCcccCCC
Q 001036         1064 YNNLSGKIPE 1073 (1180)
Q Consensus      1064 ~N~l~g~ip~ 1073 (1180)
                      +|++++..+.
T Consensus       111 ~N~~~c~c~~  120 (170)
T 3g39_A          111 NNPWDCACSD  120 (170)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCCCCCchh
Confidence            9999987763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=4e-13  Score=133.97  Aligned_cols=110  Identities=24%  Similarity=0.252  Sum_probs=100.7

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      ..+.+|+++|+++ .+|..+.  +.|++|+|++|+|++..|..|+++++|+.|||++|+|++..|..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3578999999999 5787664  789999999999999999999999999999999999998888889999999999999


Q ss_pred             CCcCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036         1064 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus      1064 ~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
                      +|+|++..|..+..+..+...++.+||+.|.|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998887767888899999999999999985

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=9.3e-13  Score=131.73  Aligned_cols=108  Identities=21%  Similarity=0.236  Sum_probs=77.9

Q ss_pred             ceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCC
Q 001036          986 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 1065 (1180)
Q Consensus       986 ~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N 1065 (1180)
                      +.+|+++|+++ .+|..+.  +.|++|+|++|+|++.+|..|+++++|+.|+|++|+|++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56777777775 5666554  67777777777777777777777777777777777777655556677777777777777


Q ss_pred             cCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036         1066 NLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus      1066 ~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
                      +|++..|..+..+..+....+.+||+.|.|+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            7776555556666677777777777777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=5.5e-15  Score=152.25  Aligned_cols=139  Identities=22%  Similarity=0.263  Sum_probs=121.7

Q ss_pred             hhhcCCCCCEEecCCCccccCCCc------cccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccc
Q 001036          877 WIDGLSQLSHLNLAHNNLEGEVPI------QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFS  950 (1180)
Q Consensus       877 ~~~~l~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  950 (1180)
                      .+.....++.++++++.+.|.+|.      .+..+++|++|++++|++++ +| .+..                      
T Consensus        13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------   68 (198)
T 1ds9_A           13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------   68 (198)
T ss_dssp             HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH----------------------
T ss_pred             HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc----------------------
Confidence            356778899999999999999887      89999999999999999987 44 4433                      


Q ss_pred             cCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCC
Q 001036          951 ISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 1030 (1180)
Q Consensus       951 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l 1030 (1180)
                                                     ++.|+.|++++|+++ .+|..+..+++|++|+|++|++++ +| .++.+
T Consensus        69 -------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l  114 (198)
T 1ds9_A           69 -------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL  114 (198)
T ss_dssp             -------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred             -------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence                                           348999999999999 688888888999999999999997 55 68999


Q ss_pred             CCCCEEECcCCcCcccCC-ccccCCCCCCEEEcCCCcCcccCCC
Q 001036         1031 RHIESLDLSYNKLSGKIP-RQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus      1031 ~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      ++|+.|++++|++++..+ ..+..++.|++|++++|++++.+|.
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            999999999999996433 5789999999999999999988775

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=1.6e-12  Score=130.02  Aligned_cols=90  Identities=22%  Similarity=0.236  Sum_probs=83.5

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      .|+.|+|++|+|++.+|..|+++++|++|+|++|+|++..+..|+++++|+.|||++|+|++..|..|..+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            68999999999999999999999999999999999998877788999999999999999997777779999999999999


Q ss_pred             CCcCcccCCC
Q 001036         1064 YNNLSGKIPE 1073 (1180)
Q Consensus      1064 ~N~l~g~ip~ 1073 (1180)
                      +|++.+..+.
T Consensus       114 ~N~~~c~~~~  123 (174)
T 2r9u_A          114 NNPWDCECRD  123 (174)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCccccccc
Confidence            9999976653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.25  E-value=3.3e-10  Score=130.33  Aligned_cols=135  Identities=10%  Similarity=0.176  Sum_probs=78.4

Q ss_pred             cCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036          849 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN  928 (1180)
Q Consensus       849 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  928 (1180)
                      +...+|.++..|+.+.+.++..+ .....|.++++|+.+.+. +.++.....+|.++.+|+.+++..+ ++..-..+|.+
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            33446777777777777654432 445667777777777775 3454445566777777777777654 44444445544


Q ss_pred             cccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCC
Q 001036          929 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTR 1008 (1180)
Q Consensus       929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~ 1008 (1180)
                      ++                                                     +|+.+.+..+ ++..-..+|.++++
T Consensus       333 C~-----------------------------------------------------~L~~i~ip~s-v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          333 CE-----------------------------------------------------QLERIAIPSS-VTKIPESAFSNCTA  358 (394)
T ss_dssp             CT-----------------------------------------------------TCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred             CC-----------------------------------------------------CCCEEEECcc-cCEEhHhHhhCCCC
Confidence            33                                                     5667777543 55344566888888


Q ss_pred             CCEEeCccccccccccccccCCCCCCEEECcCCcC
Q 001036         1009 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043 (1180)
Q Consensus      1009 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1043 (1180)
                      |+.+++++|....   ..|....+|+.+.+..|.+
T Consensus       359 L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          359 LNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            8888888776542   4566677788887776654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=1.1e-11  Score=140.38  Aligned_cols=112  Identities=17%  Similarity=0.224  Sum_probs=89.0

Q ss_pred             ccceEEccC-CcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEc
Q 001036          984 LLAGLDLSC-NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 1062 (1180)
Q Consensus       984 ~L~~LdLs~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~l 1062 (1180)
                      +|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|++
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            789999996 999988888999999999999999999999999999999999999999999977666676666 999999


Q ss_pred             CCCcCcccCC-CcccccccCCccccCCCCCCCCCC
Q 001036         1063 AYNNLSGKIP-EWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus      1063 s~N~l~g~ip-~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
                      ++|++.+..+ .++.++.......+..+...|..|
T Consensus       111 ~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A          111 SGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             CSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             eCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence            9999987554 122333222233344556666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.24  E-value=7.2e-10  Score=127.46  Aligned_cols=323  Identities=14%  Similarity=0.148  Sum_probs=191.0

Q ss_pred             CCcEEEccCCcCCccCCccccCcccCcEEEccCcc---cccccChhhhhcCCCCCEEEccCCcccccccccccCCccCce
Q 001036          666 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK---LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW  742 (1180)
Q Consensus       666 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~---l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  742 (1180)
                      .|+.+.+..+ ++.+...+|.++.+|+.+.+..|.   ++ .|+...|.++.+|+.+.+..+ ++.....+|..+.+|+.
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~  141 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT  141 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence            3555555432 444555566666666666665543   43 555666666666666665543 44444556666667777


Q ss_pred             eeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcc
Q 001036          743 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI  822 (1180)
Q Consensus       743 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  822 (1180)
                      +.+..+ +..+....|.++.+|+.+.+.++ +...-..+|. ...|+.+.+..+-.. ....+|.++.+++......+..
T Consensus       142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~  217 (394)
T 4gt6_A          142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESY  217 (394)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSS
T ss_pred             ccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceeccccccc
Confidence            766543 33344556667777777777554 2212223343 356777776554322 3445666777777766655443


Q ss_pred             cccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccc
Q 001036          823 SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL  902 (1180)
Q Consensus       823 ~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  902 (1180)
                      .. +...+..         .+.. +......+.....+..+.+.. .++..-...|.++..|+.+.+..+... ....+|
T Consensus       218 ~~-~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF  284 (394)
T 4gt6_A          218 PA-IDNVLYE---------KSAN-GDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAF  284 (394)
T ss_dssp             CB-SSSCEEE---------ECTT-SCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTT
T ss_pred             cc-ccceeec---------cccc-ccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccc
Confidence            31 1111000         0000 000000122334455555542 344455678999999999999876543 556789


Q ss_pred             cCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhc
Q 001036          903 CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL  982 (1180)
Q Consensus       903 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  982 (1180)
                      .++++|+.+++. +.++.....+|.++.                                                    
T Consensus       285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~----------------------------------------------------  311 (394)
T 4gt6_A          285 MNCPALQDIEFS-SRITELPESVFAGCI----------------------------------------------------  311 (394)
T ss_dssp             TTCTTCCEEECC-TTCCEECTTTTTTCT----------------------------------------------------
T ss_pred             ccccccccccCC-CcccccCceeecCCC----------------------------------------------------
Confidence            999999999996 456555556666544                                                    


Q ss_pred             cccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEc
Q 001036          983 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 1062 (1180)
Q Consensus       983 ~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~l 1062 (1180)
                       +|+.+++..+ ++..-..+|.++++|+.+.+..+ ++..-..+|.++++|+.+++.+|....   .++.....|+.+.+
T Consensus       312 -~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          312 -SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV  385 (394)
T ss_dssp             -TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred             -CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence             6888888764 55455678999999999999765 775566789999999999999987542   46777888888888


Q ss_pred             CCCcC
Q 001036         1063 AYNNL 1067 (1180)
Q Consensus      1063 s~N~l 1067 (1180)
                      ..|.+
T Consensus       386 ~~~~~  390 (394)
T 4gt6_A          386 APGSI  390 (394)
T ss_dssp             -----
T ss_pred             CCCCE
Confidence            76654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=1.9e-11  Score=138.26  Aligned_cols=109  Identities=16%  Similarity=0.219  Sum_probs=97.7

Q ss_pred             ceEEccCC-cccCCCCccccCCCCCCEEeCcc-ccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036          986 AGLDLSCN-KLVGHIPPQIGNLTRIQTLNLSH-NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus       986 ~~LdLs~N-~l~g~~p~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      ..+|++++ +|+ .+|. +..+++|+.|+|++ |+|++..|..|+++++|+.|||++|+|++..|..|.++++|+.|||+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45799998 898 5888 99999999999996 99999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCcccccccCCccccCCCCCCCCCCC
Q 001036         1064 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 1097 (1180)
Q Consensus      1064 ~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l 1097 (1180)
                      +|+|++.+|..+..+. +....+.+|++.|.|.+
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence            9999987766444443 78888999999999864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.14  E-value=2.1e-12  Score=146.08  Aligned_cols=164  Identities=21%  Similarity=0.228  Sum_probs=104.1

Q ss_pred             CCCcEEECcCccCccccchhhhcC-----CCCCEEecCCCccccCCCcccc-CCCCCCEEECcCCcCcccCCCCccCccc
Q 001036          858 SSLVTLDLSYNYLNGSIPDWIDGL-----SQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDNTTL  931 (1180)
Q Consensus       858 ~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  931 (1180)
                      ++|+.|+|++|.++......+...     ++|++|+|++|.++......+. .+++|+.|+|++|+++......+...  
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~--  149 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL--  149 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH--
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH--
Confidence            466777777777765444444332     5677777777776543322222 34567778888777754322111100  


Q ss_pred             ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccC----CCCccccCCC
Q 001036          932 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG----HIPPQIGNLT 1007 (1180)
Q Consensus       932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g----~~p~~~~~l~ 1007 (1180)
                                                        +            ....+.|+.|+|++|.|+.    .++..+...+
T Consensus       150 ----------------------------------L------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  183 (372)
T 3un9_A          150 ----------------------------------L------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT  183 (372)
T ss_dssp             ----------------------------------H------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS
T ss_pred             ----------------------------------H------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCC
Confidence                                              0            0012357788888888764    2344456778


Q ss_pred             CCCEEeCcccccccc----ccccccCCCCCCEEECcCCcCccc----CCccccCCCCCCEEEcCCCcCcc
Q 001036         1008 RIQTLNLSHNNLTGT----IPLTFSNLRHIESLDLSYNKLSGK----IPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus      1008 ~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
                      +|++|||++|.|+..    ++..+...++|+.|||++|.|+..    ++..+...+.|++||+++|+++.
T Consensus       184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            888888888888753    355667778888999999988753    44455567888999999998874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.03  E-value=1.2e-11  Score=139.94  Aligned_cols=159  Identities=18%  Similarity=0.144  Sum_probs=78.1

Q ss_pred             CCCcEEEccCCcCCccCCccccC-----cccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccc-----
Q 001036          665 PSLVYFNISMNALDGSIPSSFGN-----VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI-----  734 (1180)
Q Consensus       665 ~~L~~L~ls~n~l~~~~p~~~~~-----l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~-----  734 (1180)
                      +.|+.|++++|.++......+..     ...|+.|+|++|.++..-...+...+.+|+.|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            34555555555554332222221     14555555555555432222333334455555555555543332222     


Q ss_pred             cCCccCceeeccCCccccc----CCCcCCCCCCCcEEECcCCcCCCC----CcccccCCCCCCeEEccCCcCCCC----C
Q 001036          735 FSLRNLRWLLLEGNHFVGE----IPQSLSKCSSLKGLYLNNNNLSGK----IPRWLGNLKGLQHIVMPKNHLEGP----I  802 (1180)
Q Consensus       735 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~  802 (1180)
                      ...++|++|+|++|.++..    ++..+..+++|++|+|++|.+.+.    ++..+...++|++|++++|.++..    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            1234566666666655432    222334555666666666665432    233445555666666666666532    2


Q ss_pred             CccccCCCCCCEEEccCCccc
Q 001036          803 PVEFCRLDSLQILDISDNNIS  823 (1180)
Q Consensus       803 ~~~~~~l~~L~~L~l~~n~l~  823 (1180)
                      +..+...++|++|++++|.++
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhCCCCCEEeccCCCCC
Confidence            223334566777777777665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.97  E-value=4.6e-08  Score=111.83  Aligned_cols=303  Identities=12%  Similarity=0.081  Sum_probs=163.2

Q ss_pred             hhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCC
Q 001036          587 LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS  666 (1180)
Q Consensus       587 l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~  666 (1180)
                      .....+++.+.+...  ...+++..|.+|++|+.+.+.++ ++......|..+ +|+.+.+..+ ++ .++...+.. .+
T Consensus        42 ~~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~  114 (379)
T 4h09_A           42 YKDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TD  114 (379)
T ss_dssp             GGGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CC
T ss_pred             cccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CC
Confidence            334444555555432  34566666777777777777543 444444555554 5666665543 33 455555553 46


Q ss_pred             CcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccc------------cccc
Q 001036          667 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI------------FSRI  734 (1180)
Q Consensus       667 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~------------~~~~  734 (1180)
                      |+.+.+..+ ++.....+|.++ +++...+..+ ++ .+....+..+..++...+..+......            ...+
T Consensus       115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (379)
T 4h09_A          115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY  190 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred             cccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceeccc
Confidence            777777654 333344455444 4555544433 22 444445556666666666554322111            1112


Q ss_pred             cCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCE
Q 001036          735 FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI  814 (1180)
Q Consensus       735 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  814 (1180)
                      .....+....+.... .......+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ ++..-..+|.++.+|+.
T Consensus       191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~  267 (379)
T 4h09_A          191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT  267 (379)
T ss_dssp             CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence            222233333332221 1122233444444444444332 11122233444444444444433 22222333444444444


Q ss_pred             EEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCcc
Q 001036          815 LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL  894 (1180)
Q Consensus       815 L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  894 (1180)
                      +                       .+..+ + ..++..+|.+|++|+.+++.++.++.+.+..|.++.+|+.+.+..+ +
T Consensus       268 i-----------------------~l~~~-i-~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l  321 (379)
T 4h09_A          268 L-----------------------NFYAK-V-KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L  321 (379)
T ss_dssp             E-----------------------EECCC-C-SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred             c-----------------------ccccc-c-eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-c
Confidence            4                       44332 1 2455668889999999999888888777788999999999998755 6


Q ss_pred             ccCCCccccCCCCCCEEECcCCcCcccCCCCccCcc
Q 001036          895 EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT  930 (1180)
Q Consensus       895 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  930 (1180)
                      +..-..+|.++++|+.+.+..+ ++..-..+|.++.
T Consensus       322 ~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          322 KTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            6555678889999998888755 6655566777665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.94  E-value=8.1e-08  Score=109.78  Aligned_cols=69  Identities=9%  Similarity=0.115  Sum_probs=36.6

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 1054 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l 1054 (1180)
                      +|+.+++.++.++..-+.+|.++.+|+.++|..+ ++.+-..+|.++++|+.+.+..+ ++-.-..+|.+.
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            4455555555554333445666666666666543 54344456666666666666544 443334445444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.51  E-value=4.8e-08  Score=109.10  Aligned_cols=65  Identities=18%  Similarity=0.314  Sum_probs=42.8

Q ss_pred             CCCCCCEEeCcccccccccccccc---CCCCCCEEECcCCcCccc----CCccccCCCCCCEEEcCCCcCcc
Q 001036         1005 NLTRIQTLNLSHNNLTGTIPLTFS---NLRHIESLDLSYNKLSGK----IPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus      1005 ~l~~L~~L~Ls~N~l~g~~p~~~~---~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
                      .+++|++|+|++|.++...+..+.   .+++|+.|||+.|.|++.    ++..+..++.|+.|++++|.++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            466777777777777654443332   466778888888877764    33444456777888887777653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.46  E-value=4.5e-08  Score=109.32  Aligned_cols=59  Identities=29%  Similarity=0.429  Sum_probs=30.5

Q ss_pred             CCCCcEEECcCccCccc----cchhhhcCCCCCEEecCCCccccCCCccccC-CCCCCEEECcCCc
Q 001036          857 CSSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNN  917 (1180)
Q Consensus       857 ~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~Ls~N~  917 (1180)
                      +++|+.|+|+.|.+++.    ++..+..+++|+.|++++|.++...-..+.. +  ...+++++++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            45666666666666543    2233344566666666666655332222222 1  2445666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=5.8e-07  Score=94.72  Aligned_cols=78  Identities=23%  Similarity=0.285  Sum_probs=45.8

Q ss_pred             ccccceEEccCCcccC--CCCccccCCCCCCEEeCccccccccccccccCCC--CCCEEECcCCcCcccCCc-------c
Q 001036          982 LSLLAGLDLSCNKLVG--HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLR--HIESLDLSYNKLSGKIPR-------Q 1050 (1180)
Q Consensus       982 l~~L~~LdLs~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~--~L~~L~Ls~N~l~g~ip~-------~ 1050 (1180)
                      ++.|+.|+||+|+|++  .+|..+..+++|+.||||+|+|++.  +.+..++  +|+.|+|++|.+++.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            4566666777776665  3445556666666666666666654  2233333  666666666666665552       2


Q ss_pred             ccCCCCCCEEE
Q 001036         1051 LVDLNTLAIFI 1061 (1180)
Q Consensus      1051 l~~l~~L~~l~ 1061 (1180)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            44556665554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.22  E-value=2.6e-07  Score=92.90  Aligned_cols=69  Identities=13%  Similarity=0.152  Sum_probs=31.4

Q ss_pred             cccCCCCCcEEecCCC-cCCCC----ccccccCCCCCcEEEccCccccCccC---hhhccCCCCCCeEEccCCCCCc
Q 001036          106 GLSRLNNLKMLDLSGN-AFNNN----VLSSLARLSSLRSLYLSDNRLEGSID---VKELDSLRDLEELDIGGNKIDK  174 (1180)
Q Consensus       106 ~l~~l~~L~~L~Ls~~-~i~~~----lp~~l~~l~~L~~L~L~~~~~~~~~~---~~~l~~L~~L~~L~L~~~~l~~  174 (1180)
                      .+...++|++|+|++| .+...    +...+...++|++|+|++|.+.....   ...+...+.|++|+|++|.+.+
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3445555666666655 55432    22333344555555555555432100   1123334455555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.22  E-value=1e-06  Score=88.50  Aligned_cols=71  Identities=18%  Similarity=0.234  Sum_probs=43.2

Q ss_pred             cccCCCCccEEeCCCC-cCCCcccccccccccCCCCccEEEcCCCcCCchhhHHh----hccCCCceeecCCcccc
Q 001036          202 EFDSFNNLEVLDMSGN-EIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV----ARLSSLTSLHLSHNILQ  272 (1180)
Q Consensus       202 ~l~~l~~L~~L~Ls~~-~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l----~~l~~L~~L~L~~~~~~  272 (1180)
                      .+...++|++|+|++| .+.........+.+...++|++|+|++|.+.+.....+    ...+.|++|+|++|.+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            3555677777777777 66654444444456666777777777777766443333    33355666666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=5.3e-07  Score=95.03  Aligned_cols=84  Identities=23%  Similarity=0.313  Sum_probs=66.6

Q ss_pred             EEccCCccc---CCCCccccCCCCCCEEeCccccccc--cccccccCCCCCCEEECcCCcCcccCCccccCCC--CCCEE
Q 001036          988 LDLSCNKLV---GHIPPQIGNLTRIQTLNLSHNNLTG--TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN--TLAIF 1060 (1180)
Q Consensus       988 LdLs~N~l~---g~~p~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~l 1060 (1180)
                      ++++.|+..   +.++....+++.|+.|+||+|+|++  .+|..++.+++|+.|||++|+|++.  ..+..+.  .|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            677778433   2223333568899999999999998  5678888999999999999999975  3444444  89999


Q ss_pred             EcCCCcCcccCCC
Q 001036         1061 IVAYNNLSGKIPE 1073 (1180)
Q Consensus      1061 ~ls~N~l~g~ip~ 1073 (1180)
                      ++++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999998874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.97  E-value=3.2e-06  Score=82.20  Aligned_cols=87  Identities=15%  Similarity=0.274  Sum_probs=68.1

Q ss_pred             CCCCEEEccCcccCCCchhcccccccCCCCCcEEecCCCc-CCCCccccccCC----CCCcEEEccCcc-ccCccChhhc
Q 001036           83 QQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNA-FNNNVLSSLARL----SSLRSLYLSDNR-LEGSIDVKEL  156 (1180)
Q Consensus        83 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~-i~~~lp~~l~~l----~~L~~L~L~~~~-~~~~~~~~~l  156 (1180)
                      ..|++||+++|.++..    ++..+..+++|++|+|++|. +++.....++.+    ++|++|+|++|. ++ ......+
T Consensus        61 ~~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L  135 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIAL  135 (176)
T ss_dssp             CCEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHG
T ss_pred             ceEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHH
Confidence            4689999999986543    44678899999999999995 887777777775    479999999996 54 3344567


Q ss_pred             cCCCCCCeEEccCCC-CCc
Q 001036          157 DSLRDLEELDIGGNK-IDK  174 (1180)
Q Consensus       157 ~~L~~L~~L~L~~~~-l~~  174 (1180)
                      .++++|++|++++|. +++
T Consensus       136 ~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GGCTTCCEEEEESCTTCCC
T ss_pred             hcCCCCCEEECCCCCCCCc
Confidence            889999999999985 444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.74  E-value=1.7e-05  Score=77.04  Aligned_cols=35  Identities=11%  Similarity=0.146  Sum_probs=15.7

Q ss_pred             CccEEEcCCCcCCchhhHHhhccCCCceeecCCcc
Q 001036          236 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNI  270 (1180)
Q Consensus       236 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~  270 (1180)
                      +|++|++++|.+++.....+..+++|++|+|++|.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            34444444444444444444444444444444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.27  E-value=0.00027  Score=69.98  Aligned_cols=48  Identities=10%  Similarity=0.157  Sum_probs=25.0

Q ss_pred             CCCCccEEeCCCC-cCCCcccccccccccCCCCccEEEcCCCcCCchhh
Q 001036          205 SFNNLEVLDMSGN-EIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSIL  252 (1180)
Q Consensus       205 ~l~~L~~L~Ls~~-~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~  252 (1180)
                      +-+.|++|+|+++ .+.........+.+...+.|++|+|++|.+.+...
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga   87 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA   87 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHH
Confidence            3455666666653 44443333334445555566666666665554433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.85  E-value=0.0014  Score=64.87  Aligned_cols=67  Identities=13%  Similarity=0.234  Sum_probs=45.3

Q ss_pred             cccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCchhhHHhhc----cCCCceeecCC
Q 001036          202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR----LSSLTSLHLSH  268 (1180)
Q Consensus       202 ~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l~~----l~~L~~L~L~~  268 (1180)
                      .+..-+.|+.|+|++|.+.+.......+.|...+.|++|+|++|.+.+.....+..    -+.|++|+|++
T Consensus        65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            34455678888888888776655555666777888888888888887765555443    34566666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.53  E-value=0.0034  Score=58.11  Aligned_cols=56  Identities=23%  Similarity=0.254  Sum_probs=34.9

Q ss_pred             eEEccCCccc-CCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCc
Q 001036          987 GLDLSCNKLV-GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044 (1180)
Q Consensus       987 ~LdLs~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1044 (1180)
                      .+|.+++.++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5677777775 34554332  24666777777777555556666666666666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.36  E-value=0.0054  Score=56.72  Aligned_cols=58  Identities=22%  Similarity=0.248  Sum_probs=44.5

Q ss_pred             CEEeCcccccc-ccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcc
Q 001036         1010 QTLNLSHNNLT-GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus      1010 ~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
                      ..+|.+++.++ ..+|..+.  .+|+.|||++|+|+..-+..|..++.|+.|+|++|.+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47889999997 46776554  468899999999997666777888888888777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1180
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-20
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-12
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	6e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.8 bits (229), Expect = 6e-21
 Identities = 46/270 (17%), Positives = 98/270 (36%), Gaps = 15/270 (5%)

Query: 633 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 692
           ++P         LD+ NN        +  + L +L    +  N +    P +F  ++ L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 693 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 752
            L LS N+L  E+P+ +      L         ++  +F+   +   +  L        G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNPLKSSG 140

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
               +      L  + + + N++  IP+  G    L  + +  N +          L++L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 813 QILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 871
             L +S N+IS            ++++HL+ N L          +   +  + L  N ++
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNIS 255

Query: 872 G------SIPDWIDGLSQLSHLNLAHNNLE 895
                    P +    +  S ++L  N ++
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.3 bits (220), Expect = 7e-20
 Identities = 46/294 (15%), Positives = 88/294 (29%), Gaps = 20/294 (6%)

Query: 753  EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
            ++P+ L        L L NN ++        NLK L  +++  N +    P  F  L  L
Sbjct: 24   KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 813  QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 872
            + L +S N +   LP        +       +   +       N   +V L  +    +G
Sbjct: 82   ERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 873  SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 932
                   G+ +LS++ +A  N+     I       L  L L  N +  +  +        
Sbjct: 141  IENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 933  ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 992
                 + +           + P       + E+     K +           +  + L  
Sbjct: 198  AKLGLSFNSISAVDNGSLANTPH------LRELHLNNNKLVKVPGGLADHKYIQVVYLHN 251

Query: 993  NKL------VGHIPPQIGNLTRIQTLNLSHNNLTGT--IPLTFSNLRHIESLDL 1038
            N +          P           ++L  N +      P TF  +    ++ L
Sbjct: 252  NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.6 bits (218), Expect = 1e-19
 Identities = 57/281 (20%), Positives = 96/281 (34%), Gaps = 14/281 (4%)

Query: 662 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 721
           D+ P     ++  N +       F N+  L  L L NNK++   P   A   V LE L L
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYL 86

Query: 722 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 781
           S N LK        +L+ LR    E       +   L++   ++ L  N    SG     
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGA 145

Query: 782 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 841
              +K L +I +   ++     +      SL  L +  N I+    +    L+       
Sbjct: 146 FQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 842 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG----- 896
                  +  G+  N   L  L L+ N L   +P  +     +  + L +NN+       
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 897 -EVPIQLCRLNQLQLLDLSDNNLH--GLIPSCFDNTTLHES 934
              P    +      + L  N +    + PS F    +  +
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 302

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.3 bits (194), Expect = 2e-16
 Identities = 55/270 (20%), Positives = 102/270 (37%), Gaps = 31/270 (11%)

Query: 691 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 750
           L+ +  S+  L  ++P  L     +   L L NN +         +L+NL  L+L  N  
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 751 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH-------------------- 790
               P + +    L+ LYL+ N L     +    L+ L+                     
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 791 ---IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 847
              +        G     F  +  L  + I+D NI+ ++P    P S+ ++HL  N +  
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP-SLTELHLDGNKITK 185

Query: 848 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ 907
                +    ++L  L LS+N ++      +     L  L+L +N L  +VP  L     
Sbjct: 186 VD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 243

Query: 908 LQLLDLSDNNLHGLIPSCFDNTTLHESYNN 937
           +Q++ L +NN+  +  + F     +    +
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.1 bits (165), Expect = 9e-13
 Identities = 44/217 (20%), Positives = 72/217 (33%), Gaps = 9/217 (4%)

Query: 858  SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 917
                 LDL  N +          L  L  L L +N +    P     L +L+ L LS N 
Sbjct: 31   PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 918  LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977
            L  L             + N  +  K  K+ F+       VE     +     +N A+  
Sbjct: 91   LKELPEKMPKTLQELRVHENEIT--KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 978  QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037
                +  L+ + ++   +   IP   G    +  L+L  N +T     +   L ++  L 
Sbjct: 149  ----MKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 1038 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 1074
            LS+N +S      L +   L    +  N L       
Sbjct: 202  LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 5e-12
 Identities = 57/287 (19%), Positives = 97/287 (33%), Gaps = 34/287 (11%)

Query: 811  SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 870
               +LD+ +N I+                         +K+G F N  +L TL L  N +
Sbjct: 32   DTALLDLQNNKITE------------------------IKDGDFKNLKNLHTLILINNKI 67

Query: 871  NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 930
            +   P     L +L  L L+ N L+    +       LQ L + +N +  +  S F+   
Sbjct: 68   SKISPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLN 124

Query: 931  LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 990
                    ++P K              +    +     TT          +   L  L L
Sbjct: 125  QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT------IPQGLPPSLTELHL 178

Query: 991  SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 1050
              NK+       +  L  +  L LS N+++     + +N  H+  L L+ NKL  K+P  
Sbjct: 179  DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 237

Query: 1051 LVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 1097
            L D   + +  +  NN+S              K +      L   P+
Sbjct: 238  LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 5e-10
 Identities = 56/268 (20%), Positives = 97/268 (36%), Gaps = 19/268 (7%)

Query: 85  LESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSD 144
              LDL  N I    + +       L NL  L L  N  +     + A L  L  LYLS 
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 145 NRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFD 204
           N+L+  +  K   +L++L   +    K+ K + +     +     +        +   F 
Sbjct: 89  NQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 205 SFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSL 264
               L  + ++   I  +  PQGL        L +L L GN       +S+  L++L  L
Sbjct: 148 GMKKLSYIRIADTNITTI--PQGL-----PPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 265 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGI--- 321
            LS N +    +     +  +L EL +N+N++  V         + ++ + L    I   
Sbjct: 201 GLSFNSISAVDNG-SLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISAI 257

Query: 322 -RDGNKLLQSMGSFPSLNTLHLESNNFT 348
             +            S + + L SN   
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.0 bits (131), Expect = 2e-08
 Identities = 50/293 (17%), Positives = 88/293 (30%), Gaps = 44/293 (15%)

Query: 438 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 497
           P    L L  + +    + I D     L +L  L + NN +    P   A    L  L +
Sbjct: 31  PDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 498 SFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFNHSKLKIFDAKNNEINGE 555
           S NQL       P     +++ELR+  N            L     +++          E
Sbjct: 87  SKNQLK----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 556 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 615
                 +    +L  + ++                             I   P  L  + 
Sbjct: 143 NGAFQGMK---KLSYIRIADT--------------------------NITTIPQGLPPS- 172

Query: 616 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 675
             L  L+L  + +       +     L  L +S N+             P L   +++ N
Sbjct: 173 --LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNN 229

Query: 676 ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG 728
            L   +P    +  ++Q + L NN ++    +       N +  S S  SL  
Sbjct: 230 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 49/270 (18%), Positives = 88/270 (32%), Gaps = 24/270 (8%)

Query: 311 LKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 370
              LDL    I +         +  +L+TL L +N  +              LE L L  
Sbjct: 33  TALLDLQNNKITEIKD--GDFKNLKNLHTLILINNKISKISP--GAFAPLVKLERLYLSK 88

Query: 371 SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFL 430
           +      L+ +    P               +    F     +  +++    +  +    
Sbjct: 89  NQ-----LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143

Query: 431 QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT 490
                 M  L Y+ ++       +   + QGL P   L EL++D N +       L    
Sbjct: 144 GAFQ-GMKKLSYIRIAD-----TNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLN 195

Query: 491 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 550
           +L  L +SFN ++   + S        E   L  N+ ++      L +H  +++    NN
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRE---LHLNNNKLVKVPGGLADHKYIQVVYLHNN 252

Query: 551 EI----NGEINESHSLTPKFQLKSLSLSSN 576
            I    + +       T K     +SL SN
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 998  HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 1057
             +P  +        L+L +N +T      F NL+++ +L L  NK+S   P     L  L
Sbjct: 24   KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 1058 AIFIVAYNNLSGKIPEWTAQFATFNKSS 1085
                ++ N L     +            
Sbjct: 82   ERLYLSKNQLKELPEKMPKTLQELRVHE 109

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (224), Expect = 1e-20
 Identities = 49/259 (18%), Positives = 79/259 (30%), Gaps = 4/259 (1%)

Query: 662 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 721
            I  +     +  N +     +SF     L  L L +N L            +  +    
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 722 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 781
            N  L+    +    L  L  L L+        P      ++L+ LYL +N L       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 782 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 841
             +L  L H+ +  N +       F  L SL  L +  N ++   P  F  L        
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 842 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ 901
                  L         +L  L L+ N             + L     + + +   +P  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQ- 266

Query: 902 LCRLNQLQLLDLSDNNLHG 920
             RL    L  L+ N+L G
Sbjct: 267 --RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 9e-16
 Identities = 56/294 (19%), Positives = 92/294 (31%), Gaps = 36/294 (12%)

Query: 753  EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
             +P  +   ++ + ++L+ N +S          + L  + +  N L       F  L  L
Sbjct: 25   AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 813  QILDISDNNISGSL-PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 871
            + LD+SDN    S+ P+ F+ L              +L  G F   ++L  L L  N L 
Sbjct: 83   EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 872  GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 931
                D    L  L+HL L  N +          L+ L  L L  N +  + P  F +  L
Sbjct: 143  ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--L 200

Query: 932  HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 991
                      +           P  +                           L  L L+
Sbjct: 201  GRLMTLYLFANNLSALPTEALAPLRA---------------------------LQYLRLN 233

Query: 992  CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 1045
             N  V            +Q    S + +  ++P     L   +   L+ N L G
Sbjct: 234  DNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 1e-12
 Identities = 60/244 (24%), Positives = 83/244 (34%), Gaps = 4/244 (1%)

Query: 604 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 663
           I   P         L  L+L ++ LA            L  LD+S+N     +       
Sbjct: 44  ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103

Query: 664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723
           L  L   ++    L    P  F  +  LQ+L L +N L     D       NL  L L  
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHG 162

Query: 724 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 783
           N +          L +L  LLL  N      P +      L  LYL  NNLS      L 
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 784 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 843
            L+ LQ++ +  N               LQ    S + +  SLP       +K+  L+ N
Sbjct: 223 PLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRLAGRDLKR--LAAN 279

Query: 844 MLHG 847
            L G
Sbjct: 280 DLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 7e-10
 Identities = 43/242 (17%), Positives = 73/242 (30%), Gaps = 7/242 (2%)

Query: 856  NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 915
                 VT       L  ++P  I   +    + L  N +             L +L L  
Sbjct: 9    YNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 916  NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 975
            N L  +  + F    L E  + + +         +  G         L +     + +  
Sbjct: 66   NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL---HTLHLDRCGLQELGP 122

Query: 976  AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 1035
                 + +L     L  N L         +L  +  L L  N ++      F  L  ++ 
Sbjct: 123  GLFRGLAALQYL-YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 1036 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGL 1095
            L L  N+++   P    DL  L    +  NNLS    E  A          + NP++C  
Sbjct: 182  LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 1096 PL 1097
              
Sbjct: 242  RA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 3e-08
 Identities = 39/262 (14%), Positives = 77/262 (29%), Gaps = 34/262 (12%)

Query: 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ------------------------ 501
           A  Q +++  N +            +L IL +  N                         
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 502 LTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 561
              S+  +    L  +  L L     +  +        + L+    ++N +    ++  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD--T 148

Query: 562 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFL 621
                 L  L L  N   SV    F    H L    L   ++    P+   +    +   
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 622 YLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI 681
              N+  A P    +   + L++L +++N +          +   L  F  S + +  S+
Sbjct: 208 LFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 682 PSSFGNVIFLQFLDLSNNKLTG 703
           P             L+ N L G
Sbjct: 265 PQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 55/281 (19%), Positives = 102/281 (36%), Gaps = 23/281 (8%)

Query: 224 VPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL 283
           VP G+         +++ L GN  ++   +S     +LT L L  N+L     A      
Sbjct: 26  VPVGIPAA-----SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 284 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLE 343
              +    ++ ++ +V+    + GL +L +L L   G+++            +L  L+L+
Sbjct: 81  LLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQ 137

Query: 344 SNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS 403
            N   A    T    +  NL +L L  + +           F  L +L       N V  
Sbjct: 138 DNALQALPDDT--FRDLGNLTHLFLHGNRISSV----PERAFRGLHSLDRLLLHQNRVA- 190

Query: 404 GQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 463
                 F+ L  L   +      ++        + +L+YL L+      N      +   
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND-----NPWVCDCRARP 245

Query: 464 PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 504
             A LQ+    ++++  SLP  LA      +  ++ N L G
Sbjct: 246 LWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 90.6 bits (223), Expect = 3e-20
 Identities = 66/290 (22%), Positives = 107/290 (36%), Gaps = 27/290 (9%)

Query: 638 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 697
              R+  LD+S  N     P                       IPSS  N+ +L FL + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYP-----------------------IPSSLANLPYLNFLYIG 84

Query: 698 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 757
                             L +L +++ ++ G I   +  ++ L  L    N   G +P S
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 758 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 817
           +S   +L G+  + N +SG IP   G+   L   +    +             +L  +D+
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204

Query: 818 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 877
           S N + G     F      Q              G      +L  LDL  N + G++P  
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 878 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN-LHGL-IPSC 925
           +  L  L  LN++ NNL GE+P Q   L +  +   ++N  L G  +P+C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.0 bits (206), Expect = 6e-18
 Identities = 56/292 (19%), Positives = 107/292 (36%), Gaps = 34/292 (11%)

Query: 812  LQILDISDNNISG--SLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 868
            +  LD+S  N+     +PS    L  +  +++                 + L  L +++ 
Sbjct: 52   VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 869  YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928
             ++G+IPD++  +  L  L+ ++N L G +P  +  L  L  +    N + G IP     
Sbjct: 112  NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS--- 168

Query: 929  TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 988
               + S++   +     +   +   P       +  +          A            
Sbjct: 169  ---YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 989  DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 1048
                   +     ++G    +  L+L +N + GT+P   + L+ + SL++S+N       
Sbjct: 226  IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN------- 278

Query: 1049 RQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 1100
                             NL G+IP+       F+ S+Y  N  LCG PLP C
Sbjct: 279  -----------------NLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.9 bits (190), Expect = 7e-16
 Identities = 62/293 (21%), Positives = 100/293 (34%), Gaps = 34/293 (11%)

Query: 759  SKCSSLKGLYLNNNNLSGK--IPRWLGNLKGLQHIVMPKNH-LEGPIPVEFCRLDSLQIL 815
            ++   +  L L+  NL     IP  L NL  L  + +   + L GPIP    +L  L  L
Sbjct: 47   TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 816  DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 875
             I+  N+SG++P     +                   +  +  +LV +    N ++G+IP
Sbjct: 107  YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 876  DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY 935
            D     S+L        N              L  +DLS N L G     F +    +  
Sbjct: 167  DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 936  NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 995
            +   +          +S     +                              DL  N++
Sbjct: 227  HLAKNSLAFDLGKVGLSKNLNGL------------------------------DLRNNRI 256

Query: 996  VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 1048
             G +P  +  L  + +LN+S NNL G IP    NL+  +    + NK     P
Sbjct: 257  YGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.2 bits (157), Expect = 1e-11
 Identities = 47/281 (16%), Positives = 90/281 (32%), Gaps = 13/281 (4%)

Query: 485 CLANTTSLRI--LDVSFNQLTGSISSSP-LVHLTSIEELRLSNNHFRIPVSLEPLFNHSK 541
           C  +T + R+  LD+S   L         L +L  +  L +   +  +      +   ++
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 542 LKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 601
           L      +  ++G I +  S          S ++      T P  +     L        
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS---GTLPPSISSLPNLVGITFDGN 159

Query: 602 KMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG 661
           ++ G  P+     +     + +  + L G       +          N        +   
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 662 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 721
           D     ++   +  A D        N+     LDL NN++ G +P  L      L  L++
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNL---NGLDLRNNRIYGTLPQGLT-QLKFLHSLNV 275

Query: 722 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCS 762
           S N+L G I  +  +L+         N  +   P  L  C+
Sbjct: 276 SFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.5 bits (150), Expect = 7e-11
 Identities = 63/307 (20%), Positives = 109/307 (35%), Gaps = 37/307 (12%)

Query: 17  CLDHERFALLRLKHFFTDPYD----KGATDCCQ--WEGVECSNTTG--RVIGLYLSETYS 68
           C   ++ ALL++K    +P         TDCC   W GV C   T   RV  L LS    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 69  GEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNN---------------- 112
            + + + +SL      L  L +   N         +  L++L+                 
Sbjct: 63  PKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 113 -----LKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDI 167
                L  LD S NA +  +  S++ L +L  +    NR+ G+I        +    + I
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 168 GGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQG 227
             N++   +     +   +                F S  N + + ++ N +   +   G
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241

Query: 228 LERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE 287
           L +          DLR N    ++   + +L  L SL++S N L G I   +  +L   +
Sbjct: 242 LSKNLNGL-----DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI--PQGGNLQRFD 294

Query: 288 ELDINDN 294
                +N
Sbjct: 295 VSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.3 bits (147), Expect = 2e-10
 Identities = 57/277 (20%), Positives = 91/277 (32%), Gaps = 5/277 (1%)

Query: 531 VSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQ 590
           V  +      ++   D     +        SL     L  L +          P  +   
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 591 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNN 650
            +L    ++H  + G  P++L +  T +   +  N +L+G     I S   L  +    N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGN 159

Query: 651 NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA 710
              G IP   G          IS N L G IP +F N+         N           +
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 711 MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 770
                         +       ++   +NL  L L  N   G +PQ L++   L  L ++
Sbjct: 220 DKNTQKIH---LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 771 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC 807
            NNL G+IP+  GNL+         N      P+  C
Sbjct: 277 FNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.1 bits (110), Expect = 8e-06
 Identities = 57/276 (20%), Positives = 93/276 (33%), Gaps = 17/276 (6%)

Query: 253 SSVARLSSLTSLHLSHNILQGSID-AKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 311
            +  +   + +L LS   L           +L  L  L I         +      L +L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 312 KSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS 371
             L ++   +         +    +L TL    N  +   T    + +  NL  +T D +
Sbjct: 104 HYLYITHTNVSGAIP--DFLSQIKTLVTLDFSYNALSG--TLPPSISSLPNLVGITFDGN 159

Query: 372 SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 431
            +  ++  S GS       L  S       L+G+  P F +L    +  +R  L      
Sbjct: 160 RISGAIPDSYGSFS----KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 432 IIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 491
           + G    + K        L  NS       +    +L  L + NN + G+LP  L     
Sbjct: 216 LFGSDKNTQKI------HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 492 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 527
           L  L+VSFN L G I      +L   +    +NN  
Sbjct: 270 LHSLNVSFNNLCGEIPQGG--NLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 117 DLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNK 171
           DL  N     +   L +L  L SL +S N L G I   +  +L+  +      NK
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI--PQGGNLQRFDVSAYANNK 302

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 91.6 bits (226), Expect = 4e-20
 Identities = 63/361 (17%), Positives = 119/361 (32%), Gaps = 25/361 (6%)

Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
           L  +  L  D   ++ S+   +    +L  ++ S NQLT       L  L  I       
Sbjct: 43  LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 525 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 584
                  +L  L   +         + +    N +        +  +S  S         
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 585 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF-----LYLVNDSLAGPFRLPIHSH 639
                      A L+ ++ +    N + + +   +      L   N+ ++     P+   
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PLGIL 218

Query: 640 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 699
             L  L ++ N  +    +     L +L   +++ N +    P     +  L  L L  N
Sbjct: 219 TNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 700 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 759
           +++   P        NLE      N  +    S I +L+NL +L L  N+     P  +S
Sbjct: 274 QISNISPLAGLTALTNLEL-----NENQLEDISPISNLKNLTYLTLYFNNISDISP--VS 326

Query: 760 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 819
             + L+ L+  NN +S      L NL  +  +    N +    P     L  +  L ++D
Sbjct: 327 SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

Query: 820 N 820
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 7e-19
 Identities = 61/386 (15%), Positives = 115/386 (29%), Gaps = 43/386 (11%)

Query: 694  LDLSNNKLTGEIP-DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 752
              L    +T  +    L      +  L      +K      +  L NL  +    N    
Sbjct: 27   TVLGKTNVTDTVSQTDLD----QVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTD 80

Query: 753  EIPQSLSKCSSLKGLYLNNNNLSGKIPRW------LGNLKGLQHIVMPKNHLEGPIPVEF 806
              P  L   + L  + +NNN ++   P           L   Q   +        +    
Sbjct: 81   ITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 138

Query: 807  CRLDSLQILDISDNNISGSLPSCFYPLSI-------KQVHLSKNMLHGQLKEGTFFNCSS 859
               +++  +       S    S    ++          +       +           ++
Sbjct: 139  LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198

Query: 860  LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 919
            L +L  + N ++   P  I   + L  L+L  N L+      L  L  L  LDL++N + 
Sbjct: 199  LESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254

Query: 920  GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 979
             L P              N   +       +                E     +      
Sbjct: 255  NLAPLSGLTKLTELKLGANQISNISPLAGLTAL-----------TNLELNENQLEDISPI 303

Query: 980  RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS 1039
              L  L  L L  N +    P  + +LT++Q L  ++N ++     + +NL +I  L   
Sbjct: 304  SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 1040 YNKLSGKIPRQLVDLNTLAIFIVAYN 1065
            +N++S   P  L +L  +    +   
Sbjct: 360  HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 4e-17
 Identities = 75/409 (18%), Positives = 137/409 (33%), Gaps = 64/409 (15%)

Query: 645  LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 704
              +   N    +     D + +L    + + ++DG        +  L  ++ SNN+LT  
Sbjct: 27   TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI 81

Query: 705  IP------------DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 752
             P            ++  +  +       +   L                  L       
Sbjct: 82   TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 753  EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
                 +S  S L  L   +        + L NL  L+ + +  N           +L +L
Sbjct: 142  NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNL 199

Query: 813  QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 872
            + L  ++N IS   P      ++ ++ L+ N L      GT  + ++L  LDL+ N ++ 
Sbjct: 200  ESLIATNNQISDITPLGILT-NLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISN 255

Query: 873  SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 932
              P  + GL++L+ L L  N +    P+          L+ +       I +  + T L 
Sbjct: 256  LAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 933  ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 992
              +NN                        I +I   ++           L+ L  L  + 
Sbjct: 314  LYFNN------------------------ISDISPVSS-----------LTKLQRLFFAN 338

Query: 993  NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041
            NK+       + NLT I  L+  HN ++   PL  +NL  I  L L+  
Sbjct: 339  NKVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.2 bits (199), Expect = 1e-16
 Identities = 61/400 (15%), Positives = 139/400 (34%), Gaps = 38/400 (9%)

Query: 281 DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTL 340
            +L+   +  +    + +         L ++ +L    +GI+     +  +    +L  +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKS----IDGVEYLNNLTQI 71

Query: 341 HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI----SLLQSIGSIFPSLKNLSMSGC 396
           +  +N     LT    L N T L  + ++++ +      + L ++  +      ++    
Sbjct: 72  NFSNNQ----LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127

Query: 397 EVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSR 456
             N     +      ++  +       +L           +  L  L+       +++  
Sbjct: 128 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 187

Query: 457 ILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 516
                L  L +L+ L   NN +    P      T+L  L ++ NQL        L  LT+
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD---IGTLASLTN 242

Query: 517 IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 576
           + +L L+NN      +L PL   +KL       N+I+        ++P   L +L+    
Sbjct: 243 LTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISN-------ISPLAGLTALTNLEL 292

Query: 577 YGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPI 636
             + +     + +   L    L    +    P   + + TKL+ L+  N+ ++      +
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDVS--SL 347

Query: 637 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 676
            +   + +L   +N      P+     L  +    ++  A
Sbjct: 348 ANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.3 bits (181), Expect = 2e-14
 Identities = 56/252 (22%), Positives = 101/252 (40%), Gaps = 19/252 (7%)

Query: 43  CCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENE 102
                  + S          L+   + E   ++++  +    L  L    + IA   +  
Sbjct: 151 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 210

Query: 103 GLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDL 162
            +  L  L NL  L L+GN   +  + +LA L++L  L L++N++     +  L  L   
Sbjct: 211 DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKL--- 265

Query: 163 EELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNL 222
            EL +G N+I        L+ L +L           D+    +  NL  L +  N I   
Sbjct: 266 TELKLGANQISNIS---PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI--- 319

Query: 223 VVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDS 282
                +  +S L+KL++L    N    S +SS+A L+++  L   HN +          +
Sbjct: 320 ---SDISPVSSLTKLQRLFFANN--KVSDVSSLANLTNINWLSAGHNQISDLT---PLAN 371

Query: 283 LSNLEELDINDN 294
           L+ + +L +ND 
Sbjct: 372 LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.5 bits (179), Expect = 3e-14
 Identities = 78/423 (18%), Positives = 146/423 (34%), Gaps = 67/423 (15%)

Query: 110 LNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGG 169
           L       L      + V  S   L  + +L      ++    +  ++ L +L +++   
Sbjct: 21  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 75

Query: 170 NKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 229
           N++      K L+KL  + ++         +    +   L + +    +ID L     L 
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 230 -------RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDS 282
                   +S +S L  L     L   + ++ +  L++LT+L           D      
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 283 LSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHL 342
           L+NLE L   +N+I ++        L  L  L L+G  ++D    + ++ S  +L  L L
Sbjct: 196 LTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKD----IGTLASLTNLTDLDL 248

Query: 343 ESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVL 402
            +N     ++    L   T L  L L  + +                             
Sbjct: 249 ANNQ----ISNLAPLSGLTKLTELKLGANQIS---------------------------- 276

Query: 403 SGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGL 462
                     L    +    +  N         ++ +L YL+L  + +   S       +
Sbjct: 277 ---NISPLAGLTA--LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP------V 325

Query: 463 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 522
             L  LQ L+  NN +       LAN T++  L    NQ++      PL +LT I +L L
Sbjct: 326 SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT---PLANLTRITQLGL 380

Query: 523 SNN 525
           ++ 
Sbjct: 381 NDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.1 bits (152), Expect = 7e-11
 Identities = 68/370 (18%), Positives = 125/370 (33%), Gaps = 50/370 (13%)

Query: 231 LSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELD 290
            + L ++  L           +  V  L++LT ++ S+N L          +L+ L ++ 
Sbjct: 40  QTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDIL 94

Query: 291 INDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTAT 350
           +N+N+I ++        L  L   +     I     L        S NT+   S     T
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 351 LTTTQELHNFTN----LEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG 406
                   N       L  LT  +     S   S  S+   L NL       N +     
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 407 FPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA 466
                +L+ L +   ++    +       S+ +L  L L+ + +   +       L  L 
Sbjct: 215 LGILTNLDELSLNGNQLKDIGTL-----ASLTNLTDLDLANNQISNLAP------LSGLT 263

Query: 467 HLQELYIDNNDLRGSLP--------------------WCLANTTSLRILDVSFNQLTGSI 506
            L EL +  N +    P                      ++N  +L  L + FN ++   
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 507 SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 566
              P+  LT ++ L  +NN      SL  L   + +    A +N+I+     ++ LT   
Sbjct: 324 ---PVSSLTKLQRLFFANNKVSDVSSLANL---TNINWLSAGHNQISDLTPLAN-LT--- 373

Query: 567 QLKSLSLSSN 576
           ++  L L+  
Sbjct: 374 RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.6 bits (148), Expect = 2e-10
 Identities = 72/391 (18%), Positives = 127/391 (32%), Gaps = 57/391 (14%)

Query: 387 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIA-----LNTSFLQIIGESMPSLK 441
            +  L        G+ S  G  +  +L  ++    ++       N + L  I  +   + 
Sbjct: 45  QVTTLQADR---LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 101

Query: 442 YLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ 501
            ++   +        + +  +  +  L+ L   N     S      +  S        + 
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161

Query: 502 LTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 561
                   PL +LT++E L +S+N       L  L N   L    A NN+I+        
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITPLGI- 217

Query: 562 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFL 621
                 L  LSL+ N                        +K IG   +      T L  L
Sbjct: 218 ---LTNLDELSLNGN-----------------------QLKDIGTLASL-----TNLTDL 246

Query: 622 YLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI 681
            L N+ ++     P+    +L  L +  N      P+     L +L    ++ N      
Sbjct: 247 DLANNQISNL--APLSGLTKLTELKLGANQISNISPL---AGLTALTNLELNEN--QLED 299

Query: 682 PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 741
            S   N+  L +L L  N ++   P         L+ L  +NN +     S + +L N+ 
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSD--VSSLANLTNIN 354

Query: 742 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNN 772
           WL    N      P  L+  + +  L LN+ 
Sbjct: 355 WLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 4e-06
 Identities = 56/351 (15%), Positives = 121/351 (34%), Gaps = 47/351 (13%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
              L  ++ S N +        +  L  L  L  + ++ N   +    +     +  +L+
Sbjct: 65  LNNLTQINFSNNQL------TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMV-------------SKGLSKLKSLG 188
            +       +      +  +L    I        +               K L+ L +L 
Sbjct: 119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178

Query: 189 LSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCN 248
                     D+       NLE L  + N+I        +  L  L+ L +L L GN   
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQI------SDITPLGILTNLDELSLNGN--Q 230

Query: 249 NSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGL 308
              + ++A L++LT L L++N +           L+ L EL +  N+I N+    G    
Sbjct: 231 LKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGL--- 284

Query: 309 RKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 368
               +   +     +  + +  + +  +L  L L  NN    ++    + + T L+ L  
Sbjct: 285 ----TALTNLELNENQLEDISPISNLKNLTYLTLYFNN----ISDISPVSSLTKLQRLFF 336

Query: 369 DDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 419
             ++  +S + S+ +   ++  LS    +++ +       +   +  L + 
Sbjct: 337 --ANNKVSDVSSLAN-LTNINWLSAGHNQISDLTP---LANLTRITQLGLN 381

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (159), Expect = 5e-12
 Identities = 45/294 (15%), Positives = 90/294 (30%), Gaps = 22/294 (7%)

Query: 645 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 704
           LD++  N    +   +  +   ++ F    + +D  +   F     +Q +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVS 61

Query: 705 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 764
               +   C  L+ LSL    L   I + +    NL  L L G     E        S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 765 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 824
           +   LN +       + +          + + +L G                      S 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK---------------SD 166

Query: 825 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY-NYLNGSIPDWIDGLSQ 883
                    ++  + LS +++        FF  + L  L LS    +       +  +  
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 884 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 937
           L  L +     +G + +       L  L ++ ++   +      N    E +  
Sbjct: 227 LKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 1e-09
 Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 9/277 (3%)

Query: 789  QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ 848
            Q + +   +L   +         +       + +   L   F P  ++ + LS +++   
Sbjct: 3    QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 849  LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL 908
               G    CS L  L L    L+  I + +   S L  LNL+  +   E  +Q    +  
Sbjct: 62   TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 909  QLLDLSDNNLHGLIPSCFDNTTLHESYNNN----SSPDKPFKTSFSISGPQGSVEKKILE 964
            +L +L+ +               H S        S   K  + S   +  +       L+
Sbjct: 122  RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 965  IFEFTTKNIAYAYQGRVLSLLAGLDLS-CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 1023
            + +          +   L+ L  L LS C  ++     ++G +  ++TL +      GT+
Sbjct: 182  LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 1024 PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 1060
             L    L H   L ++ +  +      + +     I+
Sbjct: 242  QLLKEALPH---LQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 4e-08
 Identities = 39/268 (14%), Positives = 96/268 (35%), Gaps = 10/268 (3%)

Query: 238 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 297
           + LDL G   +  +   +     + +     + +   +   E  S   ++ +D++++ I+
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIE 59

Query: 298 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQEL 357
              +        KL++L L G+ + D   ++ ++    +L  L+L   +  +       L
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 358 HNFTNLEYLTLD--DSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEH 415
            + + L+ L L          +  ++  +  ++  L++SG   N   S       +    
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177

Query: 416 LDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDN 475
           + +  +   +  +        +  L++LSLS        +      L  +  L+ L +  
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET---LLELGEIPTLKTLQVFG 234

Query: 476 NDLRGSLPWCLANTTSLRILDVSFNQLT 503
               G+L         L+I    F  + 
Sbjct: 235 IVPDGTLQLLKEALPHLQINCSHFTTIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 43/275 (15%), Positives = 89/275 (32%), Gaps = 17/275 (6%)

Query: 520 LRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD 579
           L L+  +   P     L +   +  F    + ++  + E  S     +++ + LS++  +
Sbjct: 5   LDLTGKNLH-PDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF---RVQHMDLSNSVIE 59

Query: 580 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 639
             T    L    +L+   L  +++     N  L  N+ L  L L   S    F L     
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 640 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYF-------NISMNALDGSIPSSFGNVIFLQ 692
              R  +++ +         +   +  +              N     + +       L 
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 693 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN-NSLKGHIFSRIFSLRNLRWLLLEGNHFV 751
            LDLS++ +              L+ LSLS    +       +  +  L+ L + G    
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 752 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 786
           G +         L+   +N ++ +      +GN K
Sbjct: 239 GTLQLLKEALPHLQ---INCSHFTTIARPTIGNKK 270

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 35/255 (13%), Positives = 75/255 (29%), Gaps = 12/255 (4%)

Query: 597 ELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHI 656
           +L+   +  +    LL               +  P      S  R++ +D+SN+  +   
Sbjct: 6   DLTGKNLHPDVTGRLLSQGVIA--FRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVST 62

Query: 657 PVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL-SNNKLTGEIPDHLAMCCVN 715
              I      L   ++    L   I ++      L  L+L   +  +      L   C  
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 716 LEFLSLSNNSLKGHIFSRIFSLRNLRW-------LLLEGNHFVGEIPQSLSKCSSLKGLY 768
           L+ L+LS          ++                  +               + +    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 769 LNNNNLSGKIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLP 827
            ++  L     +    L  LQH+ + +   +     +E   + +L+ L +      G+L 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 828 SCFYPLSIKQVHLSK 842
                L   Q++ S 
Sbjct: 243 LLKEALPHLQINCSH 257

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 49/286 (17%), Positives = 93/286 (32%), Gaps = 19/286 (6%)

Query: 212 LDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNIL 271
           LD++G  +   V  + L +     +            +  L+       +  + LS++++
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRC------PRSFMDQPLAEHFSPFRVQHMDLSNSVI 58

Query: 272 QGSIDAKEFDSLSNLEELDINDNEIDNVEVS--RGYRGLRKLKSLDLSGVGIRDGNKLLQ 329
           + S         S L+ L +    + +  V+       L +L     SG        LL 
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 330 SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLK 389
           S      LN                  +        L+    +L  S L ++    P+L 
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 390 NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGST 449
           +L +S   +      Q F     L+HL +      +  + L++    +P+LK L + G  
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL--GEIPTLKTLQVFGI- 235

Query: 450 LGTNSSRILDQGLCPLAH-LQELYIDNNDLRGSLPWCLANTTSLRI 494
                  + D  L  L   L  L I+ +         + N  +  I
Sbjct: 236 -------VPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 4e-05
 Identities = 42/248 (16%), Positives = 89/248 (35%), Gaps = 17/248 (6%)

Query: 58  VIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLD 117
           VI      ++  +    + S F    +++ +DLS + I     +     LS+ + L+ L 
Sbjct: 25  VIAFRCPRSFMDQPLAEHFSPF----RVQHMDLSNSVIEV---STLHGILSQCSKLQNLS 77

Query: 118 LSGNAFNNNVLSSLARLSSLRSLYLSDNR-LEGSIDVKELDSLRDLEELDIGGNKIDKFM 176
           L G   ++ ++++LA+ S+L  L LS             L S   L+EL++         
Sbjct: 78  LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 137

Query: 177 VSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDN----LVVPQGLERLS 232
             +      S  ++     G     +    + L     +   +D     ++     +   
Sbjct: 138 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 197

Query: 233 RLSKLKKLDLRG-NLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI 291
           +L+ L+ L L          L  +  + +L +L +   +  G++          L  L I
Sbjct: 198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL----LKEALPHLQI 253

Query: 292 NDNEIDNV 299
           N +    +
Sbjct: 254 NCSHFTTI 261

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 8e-05
 Identities = 47/236 (19%), Positives = 91/236 (38%), Gaps = 9/236 (3%)

Query: 165 LDIGGNKIDKFMVSKGLSK-LKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLV 223
           LD+ G  +   +  + LS+ + +     +       + E  S   ++ +D+S + I+   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVIEVST 62

Query: 224 VPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNI-LQGSIDAKEFDS 282
           +      LS+ SKL+ L L G   ++ I++++A+ S+L  L+LS               S
Sbjct: 63  LH---GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 283 LSNLEELDINDNEIDNVEVSRGY--RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTL 340
            S L+EL+++       +  +         +  L+LSG         L ++         
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 341 HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGC 396
              S++        QE      L++L+L      I          P+LK L + G 
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 3e-11
 Identities = 37/208 (17%), Positives = 63/208 (30%), Gaps = 7/208 (3%)

Query: 712 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 771
              +   ++    +L   +   +   ++   L L  N        +L   + L  L L+ 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 772 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY 831
             L+         L  L  + +  N L+    +         + D+S N ++        
Sbjct: 65  AELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALR 121

Query: 832 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 891
            L   Q    K      L  G       L  L L+ N L       ++GL  L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 892 NNLEGEVPIQLCRLNQLQLLDLSDNNLH 919
           N+L   +P      + L    L  N   
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 32/213 (15%), Positives = 70/213 (32%), Gaps = 14/213 (6%)

Query: 856  NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 915
              +S + ++     L  ++P  +      + L+L+ N L       L    +L  L+L  
Sbjct: 8    KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 916  NNLHGLIP-SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 974
              L  L            +  +N          +            ++  +     + + 
Sbjct: 65   AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 975  YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 1034
               +  +           N+L    P  +    +++ L+L++NNLT       + L +++
Sbjct: 125  ELQELYL---------KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 1035 SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 1067
            +L L  N L   IP+     + L    +  N  
Sbjct: 176  TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 7e-09
 Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 8/205 (3%)

Query: 642 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 701
              ++    N    +P ++          ++S N L     ++      L  L+L     
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-- 65

Query: 702 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 761
             E+        + +      +++    +     +L  L  L +  N        +L   
Sbjct: 66  --ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 762 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 821
             L+ LYL  N L    P  L     L+ + +  N+L          L++L  L + +N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 822 ISGSLPSCFYPLSIKQVHLSKNMLH 846
           +       F    +    L  N   
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 43/179 (24%), Positives = 64/179 (35%), Gaps = 5/179 (2%)

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
            +P  L K      L+L+ N L       L     L  + +  +  E         L  L
Sbjct: 24  ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVL 79

Query: 813 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 872
             LD+S N +           ++  + +S N L   L  G       L  L L  N L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT 138

Query: 873 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 931
             P  +    +L  L+LA+NNL       L  L  L  L L +N+L+ +    F +  L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 29/188 (15%), Positives = 50/188 (26%), Gaps = 8/188 (4%)

Query: 634 LPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQF 693
           LP    K    L +S N         +      L   N     LD +  +       L  
Sbjct: 25  LPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLN-----LDRAELTKLQVDGTLPV 78

Query: 694 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 753
           L   +          L    +    +   + +    +             L    + +  
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 754 IPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
           +P  L   +          NNL+      L  L+ L  +++ +N L   IP  F     L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 813 QILDISDN 820
               +  N
Sbjct: 198 PFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 8e-04
 Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 18/187 (9%)

Query: 111 NNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSL------RDLEE 164
            +  +L LS N      L++L   + L  L L    L        L  L       +  +
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 165 LDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNN-----------LEVLD 213
                 +    +    +S  +   L     +G  +++E     N                
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 214 MSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQG 273
              +  +N +       L+ L  L  L L+ N    +I         L    L  N    
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNPWLC 209

Query: 274 SIDAKEF 280
           + +   F
Sbjct: 210 NCEILYF 216

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (155), Expect = 4e-11
 Identities = 63/446 (14%), Positives = 117/446 (26%), Gaps = 33/446 (7%)

Query: 642  LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLS 697
            ++ LD+           E+  +L       +    L       I S+      L  L+L 
Sbjct: 4    IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 698  NNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 753
            +N+L       +   L      ++ LSL N  L G     + S       L E +     
Sbjct: 64   SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 754  IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 813
            +  +  +      L         ++     +    + +            +     D  +
Sbjct: 124  LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 814  ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 873
                         P     L ++   ++ +                 + L  +     G 
Sbjct: 184  AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 874  IPDWIDGLSQLSHLNL-------AHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 926
                   L   S L               G++   L     L+ L L+ N L        
Sbjct: 244  AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 927  DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG------- 979
              T L       S   K    + +      SV  +   + E    N      G       
Sbjct: 304  CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 980  --RVLSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS----- 1028
              +  S+L  L L+   +       +   +     ++ L+LS+N L     L        
Sbjct: 364  LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 1029 NLRHIESLDLSYNKLSGKIPRQLVDL 1054
                +E L L     S ++  +L  L
Sbjct: 424  PGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (153), Expect = 5e-11
 Identities = 55/451 (12%), Positives = 121/451 (26%), Gaps = 22/451 (4%)

Query: 489 TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR---IPVSLEPLFNHSKLKIF 545
           +  ++ LD+   +L+ +  +  L  L   + +RL +              L  +  L   
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 546 DAKNNEINGEINESHS---LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIK 602
           + ++NE+             TP  +++ LSL +                 L         
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL------PTL 114

Query: 603 MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 662
                 + LL +         + D      +L +              +     P     
Sbjct: 115 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 174

Query: 663 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 722
            + +       +  L   +  S   +  L+                +     +L  L+L 
Sbjct: 175 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 234

Query: 723 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL 782
           +N L     + +          L           +       + L    +     +    
Sbjct: 235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 294

Query: 783 GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 842
              +G + +          +   + +  S      S  + S    + F        +  +
Sbjct: 295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-SVLAQNRFLLELQISNNRLE 353

Query: 843 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLNLAHNNLEGEV 898
           +    +L +G     S L  L L+   ++     S+   +     L  L+L++N L    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 899 PIQLCR-----LNQLQLLDLSDNNLHGLIPS 924
            +QL          L+ L L D      +  
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 1e-08
 Identities = 54/462 (11%), Positives = 118/462 (25%), Gaps = 30/462 (6%)

Query: 439 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG----SLPWCLANTTSLRI 494
            ++ L +    L   S     + L  L   Q + +D+  L       +   L    +L  
Sbjct: 3   DIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 495 LDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 550
           L++  N+L       +          I++L L N                 +     +  
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT--------GAGCGVLSSTLRTL 111

Query: 551 EINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 610
               E++ S +L     L+ L               L +      +      ++   P++
Sbjct: 112 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 171

Query: 611 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 670
                +  +        L    +      + L+       +        I     SL   
Sbjct: 172 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 231

Query: 671 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 730
            +  N L     +     +      L    +            +     +  +       
Sbjct: 232 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291

Query: 731 FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 790
            + +                       +  CS        ++  S            + +
Sbjct: 292 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA--ACCSHFSSVLAQNRFLLELQISN 349

Query: 791 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG----SLPSCFYPL-SIKQVHLSKNML 845
             +    +             L++L ++D ++S     SL +      S++++ LS N L
Sbjct: 350 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 846 HGQ----LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 883
                  L E        L  L L   Y +  + D +  L +
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 2e-06
 Identities = 51/448 (11%), Positives = 117/448 (26%), Gaps = 23/448 (5%)

Query: 362 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS---GQGFPHFKSLEHLDM 418
           +++ L +    L  +    +  +    + + +  C +                +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 419 RFARI--ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 476
           R   +        LQ +      ++ LSL    L      +L   L  L  LQEL++ +N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 477 DLRGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 535
            L  +            +           S+S++    L S+   +       +  +   
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 536 LFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKE 595
                 L      +      +            + L        S+       ++     
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 596 AELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGH 655
                  ++            +          L    R      +     +   +     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 656 IPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV- 714
           +   + +    L    +   +   +  S F +V+      L        + D        
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 715 -------NLEFLSLSNNSLKG----HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSK--- 760
                   L  L L++  +       + + + +  +LR L L  N         L +   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 761 --CSSLKGLYLNNNNLSGKIPRWLGNLK 786
                L+ L L +   S ++   L  L+
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 4e-06
 Identities = 57/475 (12%), Positives = 113/475 (23%), Gaps = 48/475 (10%)

Query: 285 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 344
           +++ LDI   E+ +   +     L++ + + L   G+ +            S        
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE-----ARCKDISSA------- 50

Query: 345 NNFTATLTTTQELHNFTNLEYLTLDDSSLH----ISLLQSIGSIFPSLKNLSMSGCEVNG 400
                       L     L  L L  + L       +LQ + +    ++ LS+  C + G
Sbjct: 51  ------------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

Query: 401 VLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQ 460
              G      ++L  L         +        + +                    L  
Sbjct: 99  AGCGVLSSTLRTLPTLQELHLS---DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 155

Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
             C           +          +       +     +      +        + +  
Sbjct: 156 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 215

Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDS 580
           R          SL  L   S             G ++ S  L   +  +    +   GD 
Sbjct: 216 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 275

Query: 581 VTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK 640
               +      EL  A               L           V             S  
Sbjct: 276 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 335

Query: 641 RLRFLDVSNNNFQGHIPVEIGDI---------LPSLVYFNISMNALDG----SIPSSFGN 687
             +   +       +   + G              L    ++   +      S+ ++   
Sbjct: 336 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 395

Query: 688 VIFLQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 738
              L+ LDLSNN L       + + +      LE L L +      +  R+ +L 
Sbjct: 396 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 8e-06
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 71  YWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSS 130
              L   L  P   L  L L+  +++  + +     L   ++L+ LDLS N   +  +  
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 131 LAR-----LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDI 167
           L          L  L L D      ++ +     +D   L +
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 2e-05
 Identities = 62/463 (13%), Positives = 128/463 (27%), Gaps = 42/463 (9%)

Query: 387 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE---SMPSLKYL 443
            +++L +   E++     +  P  +  + + +    +    +  + I       P+L  L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL--TEARCKDISSALRVNPALAEL 60

Query: 444 SLSGSTLGTNSSRILDQGL-CPLAHLQELYIDNNDLR----GSLPWCLANTTSLRILDVS 498
           +L  + LG      + QGL  P   +Q+L + N  L     G L   L    +L+ L +S
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 499 FNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINE 558
            N L  +        L   +            +S       + +        E+    N+
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 559 SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKL 618
            +    +   + L  S    +++            ++               L  N    
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 619 EFL-YLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 677
             +  L    L    RL                +    +  +      SL    +     
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 678 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA--------MCCVNLEFLSLSNNSLKGH 729
                +       L+ L + +   T     H +        +  + +    L +  ++  
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 730 IFSRIFSLRNLRWLLLEGNHFVGE----IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 785
                     LR L L            +  +L    SL+ L L+NN L       L  +
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL--V 418

Query: 786 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 828
           + ++                      L+ L + D   S  +  
Sbjct: 419 ESVRQ-----------------PGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 11/100 (11%)

Query: 85  LESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR----LSSLRSL 140
           ++SLD+    +   ++    E L  L   +++ L            ++       +L  L
Sbjct: 4   IQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 141 YLSDNRLEGSIDVKELDSLRD----LEELDIGGNKIDKFM 176
            L  N L        L  L+     +++L +    +    
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 8e-05
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 12/100 (12%)

Query: 435 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA-----NT 489
           +    L+ L L+   +  +S   L   L     L+EL + NN L  +    L        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 490 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRI 529
             L  L +     +  +          ++ L       R+
Sbjct: 426 CLLEQLVLYDIYWSEEMED-------RLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 8e-05
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 112 NLKMLDLSGNAFNNNVLSSLA-RLSSLRSLYLSDNRLEGSIDVKE----LDSLRDLEELD 166
           +++ LD+     ++   + L   L   + + L D  L      K+    L     L EL+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELN 61

Query: 167 IGGNKIDKFMVSKGLSKLKSLGLS 190
           +  N++    V   L  L++    
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCK 85

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 208 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN----LCNNSILSSVARLSSLTS 263
           +++ LD+   E+ +       E L  L + + + L            I S++    +L  
Sbjct: 3   DIQSLDIQCEELSDARWA---ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 264 LHLSHNILQGSIDAKEFDSLS----NLEELDINDN 294
           L+L  N L           L      +++L + + 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 3e-04
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR----- 257
               + L VL ++  ++ +         L     L++LDL  N   ++ +  +       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 258 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI 291
              L  L L        ++ +      +   L +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 4e-04
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 5/75 (6%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARL- 134
           A L    QQ + + L    +      +    L     L  L+L  N   +  +  + +  
Sbjct: 20  AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79

Query: 135 ----SSLRSLYLSDN 145
                 ++ L L + 
Sbjct: 80  QTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 7e-04
 Identities = 15/110 (13%), Positives = 27/110 (24%), Gaps = 4/110 (3%)

Query: 833 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLN 888
           L I+ + +    L                 + L    L       I   +     L+ LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 889 LAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNN 938
           L  N L       + +  Q     +   +L     +      L  +    
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 111

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 7e-04
 Identities = 41/433 (9%), Positives = 90/433 (20%), Gaps = 21/433 (4%)

Query: 666  SLVYFNISMNAL-DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSL 721
             +   +I    L D         +   Q + L +  LT      ++        L  L+L
Sbjct: 3    DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 722  SNNSLKGHIFSRIFSL-----RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 776
             +N L       +          ++ L L+     G     LS            +    
Sbjct: 63   RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL--- 119

Query: 777  KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIK 836
                       L    +                 S    +   + +          +S  
Sbjct: 120  SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 837  QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 896
             ++ +   +  Q  + +     +L          N      I             +N  G
Sbjct: 180  DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 897  EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQG 956
            +V +       L                                  K    + +  G +G
Sbjct: 240  DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 957  SVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 1016
            +       +         +       +       S          +     +I    L  
Sbjct: 300  ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV-----LAQNRFLLELQISNNRLED 354

Query: 1017 NNLTGTIPLTFSNLRHIESLDLSYNKLSGK----IPRQLVDLNTLAIFIVAYNNLSGKIP 1072
              +             +  L L+   +S      +   L+  ++L    ++ N L     
Sbjct: 355  AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 1073 EWTAQFATFNKSS 1085
                +        
Sbjct: 415  LQLVESVRQPGCL 427

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 0.001
 Identities = 13/90 (14%), Positives = 26/90 (28%)

Query: 184 LKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLR 243
           ++SL +                    +V+ +    +           L     L +L+LR
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 244 GNLCNNSILSSVARLSSLTSLHLSHNILQG 273
            N   +  +  V +     S  +    LQ 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 0.001
 Identities = 12/91 (13%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 260 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV---EVSRGYRGLRKLKSLDL 316
            + SL +    L  +  A+    L   + + ++D  +      ++S   R    L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 317 SGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 347
               +  G+  +  +       +  ++  + 
Sbjct: 63  RSNEL--GDVGVHCVLQGLQTPSCKIQKLSL 91

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 51/323 (15%), Positives = 99/323 (30%), Gaps = 21/323 (6%)

Query: 633 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 692
           RL     ++   L+++N          + ++ P L     S N+L   +P    ++  L 
Sbjct: 31  RLRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLL 84

Query: 693 FLDLSNNKLTGEIP----------DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 742
             + +   L+   P              +  +         +     +        +L +
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 743 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 802
           +    N              +      N+      +P  L ++    +I+     L+   
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 803 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 862
            +     D+  +  + D   S    +           L +++    + E  F   S L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 863 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 922
                N  +  I    D    L  LN+++N L  E+P    RL   + L  S N+L  + 
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLAEVP 320

Query: 923 PSCFDNTTLHESYNNNSS-PDKP 944
               +   LH  YN     PD P
Sbjct: 321 ELPQNLKQLHVEYNPLREFPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 7e-07
 Identities = 52/308 (16%), Positives = 85/308 (27%), Gaps = 45/308 (14%)

Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
             HL+ L    N L   LP       SL+ L V  N L       PL+    +   +L  
Sbjct: 57  PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK 112

Query: 525 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 584
                  S   + +     +    +   + E   + +   +   +  +L           
Sbjct: 113 LPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 172

Query: 585 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLY---------------------- 622
                       E              L+N   L  +Y                      
Sbjct: 173 SLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVR 232

Query: 623 ---------LVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNIS 673
                    L            I S       ++   N   +    + D+ PSL   N+S
Sbjct: 233 DNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 292

Query: 674 MNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSR 733
            N L   +P+       L+ L  S N L  E+P+       NL+ L +  N L+      
Sbjct: 293 NNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ----NLKQLHVEYNPLRE-FPDI 342

Query: 734 IFSLRNLR 741
             S+ +LR
Sbjct: 343 PESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 9e-07
 Identities = 50/330 (15%), Positives = 94/330 (28%), Gaps = 17/330 (5%)

Query: 463 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 522
           C      EL ++N  L  SLP    +   L  L  S N LT        +    ++   L
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNL 90

Query: 523 SNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVT 582
                  P+      ++++L+      N    +I +  + + K                 
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 583 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP---IHSH 639
             + L     L      +           L  + +               +        +
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 640 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 699
                L    +       + + D   + +              + F  +  L       N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 700 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 759
             + EI         +LE L++SNN L             L  L+   NH   E+P+   
Sbjct: 271 ASSNEIRSLC-DLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHL-AEVPELP- 323

Query: 760 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 789
              +LK L++  N L  + P    +++ L+
Sbjct: 324 --QNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 9e-07
 Identities = 56/337 (16%), Positives = 102/337 (30%), Gaps = 32/337 (9%)

Query: 738  RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 797
            R    L L        +P+       L+ L  + N+L+ ++P    +LK    +++  N+
Sbjct: 38   RQAHELELNNLGL-SSLPELPP---HLESLVASCNSLT-ELPELPQSLK---SLLVDNNN 89

Query: 798  LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 857
            L+         L  L       NN    LP       +K + +  N L            
Sbjct: 90   LKA-----LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 858  SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 917
                           +  + +  L  L  L   + +      +    L+   ++  ++  
Sbjct: 145  ----------IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 918  LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977
                        T   + NN          S      + +    + E+ +  T       
Sbjct: 195  EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254

Query: 978  QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037
                LS L       N     I         ++ LN+S+N L   +P     L     L 
Sbjct: 255  IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LI 310

Query: 1038 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 1074
             S+N L+ ++P    +L  L    V YN L  + P+ 
Sbjct: 311  ASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 4e-06
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 14/164 (8%)

Query: 560 HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 619
             LT  +   +L  +            +   +     EL       +    +    ++L 
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 620 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG 679
                 ++ +   R        L  L+VSNN        E+  + P L     S N L  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHL-A 317

Query: 680 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723
            +P    N   L+ L +  N L  E PD       ++E L +++
Sbjct: 318 EVPELPQN---LKQLHVEYNPLR-EFPDIPE----SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 47/334 (14%), Positives = 85/334 (25%), Gaps = 26/334 (7%)

Query: 207 NNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHL 266
                L+++   + +L  P+    L  L              NS+        SL SL +
Sbjct: 38  RQAHELELNNLGLSSL--PELPPHLESL----------VASCNSLTELPELPQSLKSLLV 85

Query: 267 SHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNK 326
            +N L+   D         +    +                +       L  +       
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 327 LLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFP 386
              +          +L                       L    +  +I          P
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYA-DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 387 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 446
            L  +      +  +          ++    +        +     + E++ S       
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 447 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 506
                  SS  +         L+EL + NN L   LP        L  L  SFN L   +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EV 319

Query: 507 SSSPLVHLTSIEELRLSNNHFR----IPVSLEPL 536
              P     ++++L +  N  R    IP S+E L
Sbjct: 320 PELP----QNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 242 LRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEV 301
              N  +N I S      SL  L++S+N L   + A        LE L  + N +  V  
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLAEVP- 320

Query: 302 SRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 344
                  + LK L +        N L +      S+  L + S
Sbjct: 321 ----ELPQNLKQLHVE------YNPLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.003
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 92  WNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSI 151
                  + NE         +L+ L++S    NN ++   A    L  L  S N L   +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVS----NNKLIELPALPPRLERLIASFNHLA-EV 319

Query: 152 DVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLS 190
                +  ++L++L +  N + +F        ++ L ++
Sbjct: 320 P----ELPQNLKQLHVEYNPLREF--PDIPESVEDLRMN 352

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 8/138 (5%)

Query: 683 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 742
           + + N +  + LDL   K+   I  +L       + +  S+N +          LR L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 743 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG----KIPRWLGNLKGLQHIVMPKNHL 798
           LL+  N               L  L L NN+L           L +L  L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 799 EGPIPVEFCRLDSLQILD 816
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 3/127 (2%)

Query: 1001 PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 1060
             Q  N  R + L+L    +   I    + L   +++D S N++          L  L   
Sbjct: 12   AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 1061 IVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLI 1120
            +V  N +               +     N  +    L    SL +++          N  
Sbjct: 69   LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 1121 DMDSFFI 1127
                + I
Sbjct: 129  HYRLYVI 135

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 17/194 (8%)

Query: 856  NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 915
              +  +  +L    +  ++    + L+ +  +   +++++    IQ   L  +  L L+ 
Sbjct: 22   AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 916  NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTT----- 970
            N L  + P            + N   D                   I +I          
Sbjct: 78   NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 971  -----KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL 1025
                  N                    +  +  I P +  LT++Q L LS N+++  +  
Sbjct: 138  SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DLR- 194

Query: 1026 TFSNLRHIESLDLS 1039
              + L++++ L+L 
Sbjct: 195  ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 37/209 (17%), Positives = 76/209 (36%), Gaps = 22/209 (10%)

Query: 110 LNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGG 169
                  +L   +  + V  +   L+S+  +  +++ ++    V+ +  L ++ +L + G
Sbjct: 23  FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 77

Query: 170 NKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 229
           NK+        L  L  L L     K    +++     +L +     ++I+ LV      
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP--- 134

Query: 230 RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEEL 289
                       L      N+ ++ +  LS LT L           D      L+ L+ L
Sbjct: 135 -----------QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 183

Query: 290 DINDNEIDNVEVSRGYRGLRKLKSLDLSG 318
            ++ N I ++       GL+ L  L+L  
Sbjct: 184 YLSKNHISDLR---ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 4e-05
 Identities = 32/196 (16%), Positives = 66/196 (33%), Gaps = 20/196 (10%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
           F +    +L   ++            + LN++  +  + +   +  +  +  L ++  L+
Sbjct: 23  FAETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 142 LSDNRLEGSIDVKEL----------DSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSG 191
           L+ N+L     +  L          + ++DL  L          +   G+S +  L    
Sbjct: 75  LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 192 TGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI 251
                     +      L  L               +  L+ L+KL+ L L  N  + S 
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN--HISD 192

Query: 252 LSSVARLSSLTSLHLS 267
           L ++A L +L  L L 
Sbjct: 193 LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.002
 Identities = 34/209 (16%), Positives = 64/209 (30%), Gaps = 33/209 (15%)

Query: 656 IPVEIGDILP-----SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA 710
           +P  I  I         +  N+   ++  ++  +   +  +  +  +N+ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 711 MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL------------------LLEGNHFVG 752
               N+  L L+ N L               +L                   L   H   
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 812
                L     L+ LYL NN ++         L  L  + +  N +   +P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 813 QILDISDNNISGSLPSCFYPLSIKQVHLS 841
           Q L +S N+IS  L +     ++  + L 
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKNLDVLELF 208

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 3/163 (1%)

Query: 680 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 739
            IP           L L++N+L     D L     +L  L L  N L G   +      +
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 740 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 799
           ++ L L  N       +       LK L L +N +S  +P    +L  L  + +  N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 800 GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 842
               + +   + L+   ++        PS    + IK +  S+
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPVEFCRLDS 811
           EIP+ +        L LN+N L       L G L  L  + + +N L G  P  F     
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 812 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 871
           +Q L + +N I       F  L   +     +     +  G+F + +SL +L+L+ N  N
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 872 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 918
            +          L   +L         P    ++  +Q+ DL  +  
Sbjct: 140 CNCHLAW-FAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 6/182 (3%)

Query: 759 SKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILD 816
           + C      +      L  +IPR +        +++  N L              L  L+
Sbjct: 4   AMCHCEGTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLE 60

Query: 817 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 876
           +  N ++G  P+ F   S  Q          ++    F     L TL+L  N ++  +P 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120

Query: 877 WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 936
             + L+ L+ LNLA N       +        +   L+        PS   +  + +  +
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKDLPH 179

Query: 937 NN 938
           + 
Sbjct: 180 SE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 6/165 (3%)

Query: 593 LKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 652
             E  L+  ++     + L      L  L L  + L G           ++ L +  N  
Sbjct: 31  TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 653 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC 712
           +          L  L   N+  N +   +P SF ++  L  L+L++N             
Sbjct: 91  KEISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA--WF 147

Query: 713 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 757
              L   SL+  + +    S    +R+++   L  + F      S
Sbjct: 148 AEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFKCSSENS 189

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 26/237 (10%)

Query: 487 ANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD 546
               +   +    + +T +++ +    L  I  L           ++E +   + L   +
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 547 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGE 606
            K+N+I       +          L+  +    S    K +     L+  +   +     
Sbjct: 70  LKDNQITDLAPLKN----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 607 FPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS 666
                L   + L+ LYL  + +     L   ++ +   +  +  +    +          
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----SK 174

Query: 667 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723
           L       N +    P    ++  L  + L NN+++   P        NL  ++L+N
Sbjct: 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 5e-06
 Identities = 35/244 (14%), Positives = 79/244 (32%), Gaps = 33/244 (13%)

Query: 281 DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTL 340
            +L+N  ++    + + +         L  + +L   G G+      ++ +    +L  L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVTT----IEGVQYLNNLIGL 68

Query: 341 HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNG 400
            L+ N             +   L+ LT               S    L+++         
Sbjct: 69  ELKDNQI----------TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 401 VLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQ 460
           +          +L+ L +   +I   +    +      S+             +      
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN-----------AQVSDLT 167

Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
            L  L+ L  L  D+N +    P  LA+  +L  + +  NQ++      PL + +++  +
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIV 222

Query: 521 RLSN 524
            L+N
Sbjct: 223 TLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 8e-06
 Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 22/219 (10%)

Query: 110 LNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGG 169
           L N   +    +   + V  + A L  + +L      +     ++ +  L +L  L++  
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 170 NKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 229
           N+I      K L+K+  L LSG   K    +    S   L++      ++  L     L+
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 230 RLSR-----------LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAK 278
            L                     L       S L+ +A LS LT+L    N +       
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS--- 189

Query: 279 EFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS 317
              SL NL E+ + +N+I +V           L  + L+
Sbjct: 190 PLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 19/220 (8%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLY 141
                 +    +N+            + L+ +  L   G       +  +  L++L  L 
Sbjct: 18  LANAIKIAAGKSNVTD------TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 142 LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVR 201
           L DN++     +K L  + +LE        +      + +  L       T       + 
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 202 EFDS-------FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNN-SILS 253
                        N+  L    N     +    +  L+ L+ L KL       N  S +S
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 254 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 293
            +A L +L  +HL +N +          + SNL  + + +
Sbjct: 190 PLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 27/212 (12%), Positives = 69/212 (32%), Gaps = 16/212 (7%)

Query: 856  NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 915
              ++ + +    + +  ++      L  ++ L+     +     +Q   LN L  L+L D
Sbjct: 17   ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 916  NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 975
            N +  L P            + N   +                  +I ++      +   
Sbjct: 73   NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 976  AYQGRVLSLLAGLDLSCNKLVGHI---------PPQIGNLTRIQTLNLSHNNLTGTIPLT 1026
                 +  +     L+    + ++            + NL+++ TL    N ++   P  
Sbjct: 133  VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 1027 FSNLRHIESLDLSYNKLSGKIP-RQLVDLNTL 1057
             ++L ++  + L  N++S   P     +L  +
Sbjct: 191  LASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 29/210 (13%), Positives = 62/210 (29%), Gaps = 18/210 (8%)

Query: 839  HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 898
               K+ +   +   T  +   + TL      +     + +  L+ L  L L  N +    
Sbjct: 25   AAGKSNVTDTV---TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA 79

Query: 899  PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 958
            P++         L  +       I       TL  +    +        S          
Sbjct: 80   PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 959  EKKILEIFEFTTKNIAYAYQGRVLSL---------LAGLDLSCNKLVGHIPPQIGNLTRI 1009
            +   +      T     +     +S          L  L    NK+    P  + +L  +
Sbjct: 140  QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 1010 QTLNLSHNNLTGTIPLTFSNLRHIESLDLS 1039
              ++L +N ++   PL  +N  ++  + L+
Sbjct: 198  IEVHLKNNQISDVSPL--ANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 41/218 (18%), Positives = 83/218 (38%), Gaps = 11/218 (5%)

Query: 157 DSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSG 216
            +L +  ++  G + +   +    L  + +L   GTG      +      NNL  L++  
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 217 NEIDNLVVPQGL--ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGS 274
           N+I +L   + L       LS     ++       SI +     + +T +     +    
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 275 IDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL--LQSMG 332
           +   + + ++N+  L    N       +     L  L +L        D NK+  +  + 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 333 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 370
           S P+L  +HL++N     ++    L N +NL  +TL +
Sbjct: 193 SLPNLIEVHLKNNQ----ISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 6e-04
 Identities = 29/218 (13%), Positives = 73/218 (33%), Gaps = 15/218 (6%)

Query: 234 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 293
           L+   K+    +  N +   + A L  +T+L      +      +    L+NL  L++ D
Sbjct: 18  LANAIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 294 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH-----LESNNFT 348
           N+I ++   +    + +L+        +     L        +   +         +N  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 349 ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP 408
                  ++ N + L  LT        +   S  +   +L  L+    + N +       
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 409 HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 446
              +L  + ++  +I+  +        +  +L  ++L+
Sbjct: 193 SLPNLIEVHLKNNQISDVSPL-----ANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 71  YWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSS 130
               + +      +L +L    N I        +  L+ L NL  + L  N  ++  +S 
Sbjct: 161 AQVSDLTPLANLSKLTTLKADDNKI------SDISPLASLPNLIEVHLKNNQISD--VSP 212

Query: 131 LARLSSLRSLYLSD 144
           LA  S+L  + L++
Sbjct: 213 LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 28/233 (12%), Positives = 59/233 (25%), Gaps = 23/233 (9%)

Query: 784  NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 843
             L     I   K+++   +      LD +  L      ++ ++    Y  ++  + L  N
Sbjct: 17   ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73

Query: 844  MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 903
             +             +L  +       N           Q        +    +V     
Sbjct: 74   QIT------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 904  RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 963
              N   L    +   +    +   N       N   S   P                  L
Sbjct: 128  LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK------------L 175

Query: 964  EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 1016
               +     I+       L  L  + L  N++    P  + N + +  + L++
Sbjct: 176  TTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 3/114 (2%)

Query: 985  LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKL 1043
             +GL  + +  +      +     +  L + +      +       L  + +L +  + L
Sbjct: 10   SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 1044 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 1097
                P        L+   +++N L   +   T Q  +  +    GNP  C   L
Sbjct: 69   RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 27/175 (15%), Positives = 48/175 (27%), Gaps = 26/175 (14%)

Query: 712 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 771
           C      L  + +                            +    L    +L  LY+ N
Sbjct: 6   CPHGSSGLRCTRDGAL-------------------------DSLHHLPGAENLTELYIEN 40

Query: 772 NNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 830
                 +    L  L  L+++ + K+ L    P  F     L  L++S N +        
Sbjct: 41  QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100

Query: 831 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 885
             LS++++ LS N LH                  +    L       +  +   S
Sbjct: 101 QGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 3/148 (2%)

Query: 691 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 750
              L  + +    +   HL       E    +   L+      +  L  LR L +  +  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 751 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRL 809
               P +      L  L L+ N L   +         LQ +V+  N L     +    R 
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127

Query: 810 DSLQILDISDNNISGSLPSCFYPLSIKQ 837
           +   +  + +  +          +    
Sbjct: 128 EEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 17/130 (13%), Positives = 34/130 (26%)

Query: 680 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 739
                      L  L + N +    +          L  L++  + L+            
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 740 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 799
           L  L L  N       +++   S  + +   N        RWL   +      +P+  L+
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 800 GPIPVEFCRL 809
                    +
Sbjct: 142 CHGQGPLAHM 151

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 114 KMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKID 173
           ++L L+        L  L +L  +  L LS NRL        L +LR LE L    N ++
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALE 56

Query: 174 KFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNL--VVPQGLERL 231
                  L +L+ L L     + +  ++   S   L +L++ GN +     +  +  E L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 232 SRLSKL 237
             +S +
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 767 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 826
           L+L + +L+  +   L  L  + H+ +  N L    P     L  L++L  SDN +  ++
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 827 PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL---NGSIPDWIDGLSQ 883
                   ++++ L  N L          +C  LV L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 884 LSHL 887
           +S +
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 23/131 (17%), Positives = 52/131 (39%), Gaps = 11/131 (8%)

Query: 211 VLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNI 270
           VL ++  ++        L  L +L  +  LDL     +N + +    L++L  L +    
Sbjct: 2   VLHLAHKDL------TVLCHLEQLLLVTHLDLS----HNRLRALPPALAALRCLEVLQAS 51

Query: 271 LQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQS 330
                +     +L  L+EL + +N +      +      +L  L+L G  +     + + 
Sbjct: 52  DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

Query: 331 MGS-FPSLNTL 340
           +    PS++++
Sbjct: 112 LAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 27/106 (25%)

Query: 88  LDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAF---------------------NNN 126
           L L+  ++        L  L +L  +  LDLS N                          
Sbjct: 3   LHLAHKDL------TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 56

Query: 127 VLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKI 172
            +  +A L  L+ L L +NRL+ S  ++ L S   L  L++ GN +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 813 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 872
           ++L ++  +++  L      L +  + LS N L              L  L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 873 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGL 921
                     Q   L L +N L+    IQ L    +L LL+L  N+L   
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 671 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 730
           +++   L  ++      ++ +  LDLS+N+L    P   A+ C+ +       +      
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNALEN 57

Query: 731 FSRIFSLRNLRWLLLEGNHFVG-EIPQSLSKCSSLKGLYLNNNNLSGK---IPRWLGNLK 786
              + +L  L+ LLL  N        Q L  C  L  L L  N+L  +     R    L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 787 GLQHIV 792
            +  I+
Sbjct: 118 SVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 8e-04
 Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 38/154 (24%)

Query: 887  LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFK 946
            L+LAH +L   V   L +L  +  LDLS N L  L P+      L     ++++ +    
Sbjct: 3    LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 947  TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ-IGN 1005
             +      +                                L L  N+L      Q + +
Sbjct: 61   VANLPRLQE--------------------------------LLLCNNRLQQSAAIQPLVS 88

Query: 1006 LTRIQTLNLSHNNLT---GTIPLTFSNLRHIESL 1036
              R+  LNL  N+L    G        L  + S+
Sbjct: 89   CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.003
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 24/105 (22%)

Query: 988  LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP---------------------LT 1026
            L L+   L   +   +  L  +  L+LSHN L    P                       
Sbjct: 3    LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 1027 FSNLRHIESLDLSYNKL-SGKIPRQLVDLNTLAIFIVAYNNLSGK 1070
             +NL  ++ L L  N+L      + LV    L +  +  N+L  +
Sbjct: 61   VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 7/219 (3%)

Query: 680 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 739
            IPS          L     KL        +      +     N+ L+        +L  
Sbjct: 22  EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 740 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 799
           L  + +E  + +  I     +        L +N     +P         + ++  ++++ 
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 800 GPIPVEFCRLDSLQI---LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 856
                    +        L ++ N I       F    + +++LS N    +L    F  
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 857 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE 895
            S  V LD+S   ++      ++ L +L   +    NL+
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 4e-06
 Identities = 35/235 (14%), Positives = 75/235 (31%), Gaps = 10/235 (4%)

Query: 811  SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 870
            S ++    ++ ++  +PS   P +  ++      L   +++G F     L  +++S N +
Sbjct: 9    SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDV 65

Query: 871  NGSIPDWIDGLSQLSHLNLAH--NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928
               I   +       H       NNL    P     L  LQ L +S+  +  L      +
Sbjct: 66   LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 929  TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 988
            +      +   + +       S  G         L        +       ++  L    
Sbjct: 126  SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL---- 181

Query: 989  DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 1042
            +LS N  +  +P  +    +    L++S   +         NL+ + +      K
Sbjct: 182  NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 29/234 (12%), Positives = 70/234 (29%), Gaps = 6/234 (2%)

Query: 467 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 526
             +      + +   +P  L    +   L     +L   I          +E++ +S N 
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQND 64

Query: 527 FRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 586
               +  +   N  K           N       +      L+ L +S+     +     
Sbjct: 65  VLEVIEADVFSNLPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 587 LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLD 646
           ++   ++      +I +     N  +  + +   L+L  + +        +  +     +
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL-N 182

Query: 647 VSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 700
           +S+NN    +P ++       V  +IS   +         N+  L+     N K
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 23/200 (11%), Positives = 47/200 (23%), Gaps = 1/200 (0%)

Query: 858  SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 917
             + + L      L         G   L  + ++ N++   +   +            +  
Sbjct: 29   RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 918  LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977
             + L  +      L        S     K    +       +  +          I    
Sbjct: 89   NNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 978  QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037
               +      L L+ N +              +     +NNL       F        LD
Sbjct: 148  FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 1038 LSYNKLSGKIPRQLVDLNTL 1057
            +S  ++       L +L  L
Sbjct: 208  ISRTRIHSLPSYGLENLKKL 227

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 27/235 (11%), Positives = 56/235 (23%), Gaps = 7/235 (2%)

Query: 491 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 550
           S R+     +++T      P     +  ELR      R+ +          L+  +   N
Sbjct: 9   SNRVFLCQESKVT----EIPSDLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQN 63

Query: 551 EINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 610
           ++   I            +     +N    +    F    +       +         + 
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 611 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 670
           +      L  +    +         +        L ++ N  Q                 
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT-QLDELN 182

Query: 671 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 725
               N L+      F        LD+S  ++   +P +       L   S  N  
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 48/346 (13%), Positives = 97/346 (28%), Gaps = 47/346 (13%)

Query: 735  FSL--RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 792
            FS+  ++L+   +        +   L +  S+K + L+ N +  +  RWL          
Sbjct: 3    FSIEGKSLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN------- 54

Query: 793  MPKNHLEGPIPVEFCRLDSLQILDISDN---NISGSLPSCFYPLSIKQVHLSKNMLHGQL 849
                               L+I + SD     +   +P     L    +   K       
Sbjct: 55   -------------IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101

Query: 850  KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ 909
                       +   LS +     +    +GL   +   +A    E  V  +      L+
Sbjct: 102  DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 161

Query: 910  LLDLSDNNL--------HGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 961
             +    N L             S     T+    N              ++  Q      
Sbjct: 162  SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 221

Query: 962  ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN------LTRIQTLNLS 1015
            + +       + A A   +    L  L L+   L       + +         +QTL L 
Sbjct: 222  LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 281

Query: 1016 HNNLTGTIPLT-----FSNLRHIESLDLSYNKLS--GKIPRQLVDL 1054
            +N +      T        +  +  L+L+ N+ S    +  ++ ++
Sbjct: 282  YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 52/339 (15%), Positives = 106/339 (31%), Gaps = 20/339 (5%)

Query: 412 SLEHLDMRFARIALN--TSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQ 469
           S+E   ++   I      S   ++     S+K + LSG+T+GT ++R L + +     L+
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 470 ELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRI 529
                +                L    +   +L  ++  S      + +E  +       
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH-TVRLSDNAFGPTAQEPLIDFLSKHT 121

Query: 530 PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYH 589
           P+    L N+       AK      E+  +        L+S+    N  ++ +  ++   
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181

Query: 590 QHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN 649
               +      +   G  P             +L+ + LA    L +   +   F  + +
Sbjct: 182 FQSHRLLHTVKMVQNGIRPEG---------IEHLLLEGLAYCQELKVLDLQDNTFTHLGS 232

Query: 650 NNFQGHIPVEIGDILPSLVYFNISMNALDGSI-PSSFGNVIFLQFLDLSNNKLTGEIPDH 708
           +     +          L    +S       +   S    I LQ L L  N++  +    
Sbjct: 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 292

Query: 709 LAMC----CVNLEFLSLSNNSLK--GHIFSRIFSLRNLR 741
           L         +L FL L+ N       +   I  + + R
Sbjct: 293 LKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 45/313 (14%), Positives = 90/313 (28%), Gaps = 15/313 (4%)

Query: 230 RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQG---SIDAKEFDSLSNL 286
           R S   K  KLD        S+ + +    S+  + LS N +        ++   S  +L
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 287 EELDINDNEIDNV--EVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 344
           E  + +D     V  E+    R L +          +R  +         P ++ L   +
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 121

Query: 345 NNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSG 404
                 L                L + +++     +            +    +      
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181

Query: 405 QGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCP 464
                      +     R       L         LK L L  +T     S  L   L  
Sbjct: 182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 241

Query: 465 LAHLQELYIDNNDLRGSLPWCLANT------TSLRILDVSFNQLTG----SISSSPLVHL 514
             +L+EL +++  L       + +         L+ L + +N++      ++ +     +
Sbjct: 242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 301

Query: 515 TSIEELRLSNNHF 527
             +  L L+ N F
Sbjct: 302 PDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 38/331 (11%), Positives = 92/331 (27%), Gaps = 34/331 (10%)

Query: 640 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLD 695
           K L+   ++  + +    V +     S+    +S N +       +  +  +   L+  +
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLE--DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 696 LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK---GHIFSRIFSLRNLRWLLLEGNHFVG 752
            S+      + D +      L    L    L        +   + +      L  +  + 
Sbjct: 66  FSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 753 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC----- 807
            +    +      G  +        + +   N   L+ I+  +N LE     E+      
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 808 --------RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSS 859
                    + +    +  ++ +   L  C     +     +   L          +  +
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 860 LVTLDLSYNYLNGSIPDWI------DGLSQLSHLNLAHNNLEGEVPIQLC-----RLNQL 908
           L  L L+   L+      +           L  L L +N +E +    L      ++  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 909 QLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 939
             L+L+ N          +   +  +     
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 90  LSWNNIAGCAENEGLEGLSRLNN--LKMLDLSGNAFNNNVLSSLA-----RLSSLRSLYL 142
           L+   ++       ++  S+L N  L+ L L  N    + + +L      ++  L  L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 143 SDNRLEGSIDV----KELDSLRDLEELD 166
           + NR     DV    +E+ S R   ELD
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTRGRGELD 337

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 7e-05
 Identities = 33/192 (17%), Positives = 70/192 (36%), Gaps = 19/192 (9%)

Query: 856  NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 915
              +  +   L    +  ++      L Q++ L      ++    ++   LN L  ++ S+
Sbjct: 16   ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSN 71

Query: 916  NNLHGLIP-----------SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 964
            N L  + P              +         N ++       +  I+          L 
Sbjct: 72   NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 965  IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 1024
              E ++  I+       L+ L  L+ S N++    P  + NLT ++ L++S N ++    
Sbjct: 132  RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV 189

Query: 1025 LTFSNLRHIESL 1036
            L  + L ++ESL
Sbjct: 190  L--AKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 19/191 (9%)

Query: 110 LNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGG 169
           L       L      + V  S   L  + +L      ++    +  ++ L +L +++   
Sbjct: 17  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 71

Query: 170 NKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 229
           N++      K L+KL  + ++         +    +   L + +    +ID L     L 
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 230 RLSRLSKL-----------KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAK 278
           RL   S                 L  +    + L  +A L++L  L +S N +    D  
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS---DIS 188

Query: 279 EFDSLSNLEEL 289
               L+NLE L
Sbjct: 189 VLAKLTNLESL 199

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 7/119 (5%)

Query: 811 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 870
           S Q LD+        L +         ++   +M           N   L++L+LS N L
Sbjct: 23  SQQALDLKGLRSDPDLVAQNI---DVVLNRRSSMAA--TLRIIEENIPELLSLNLSNNRL 77

Query: 871 NG--SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 927
                +   +     L  LNL+ N L+ E  +   +  +L+ L L  N+L         
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1180
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.04
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.98
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.85
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.14
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.83

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=2.4e-32  Score=303.34  Aligned_cols=258  Identities=35%  Similarity=0.581  Sum_probs=227.0

Q ss_pred             CCcEEECcCCcCCC--CCcccccCCCCCCeEEccC-CcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEE
Q 001036          763 SLKGLYLNNNNLSG--KIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH  839 (1180)
Q Consensus       763 ~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~  839 (1180)
                      .++.|+|++|.+.|  .+|..++++++|++|++++ |+++|.+|..|+++++|++|++++|++.+..|.           
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-----------  119 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-----------  119 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-----------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccc-----------
Confidence            46677777777766  4677888888888888876 788888888888888888888888888754332           


Q ss_pred             cCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCC-CEEECcCCcC
Q 001036          840 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL-QLLDLSDNNL  918 (1180)
Q Consensus       840 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~Ls~N~l  918 (1180)
                                   .+..+..|+.+++++|.+.+.+|..++++++++.+++++|.+.+.+|..+..+..+ +.+++++|++
T Consensus       120 -------------~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         120 -------------FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             -------------GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             -------------cccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence                         57778889999999999999999999999999999999999999999999988876 8999999999


Q ss_pred             cccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCC
Q 001036          919 HGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH  998 (1180)
Q Consensus       919 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  998 (1180)
                      +|..|..+.++.                                                      ...+++++|.+.|.
T Consensus       187 ~~~~~~~~~~l~------------------------------------------------------~~~l~l~~~~~~~~  212 (313)
T d1ogqa_         187 TGKIPPTFANLN------------------------------------------------------LAFVDLSRNMLEGD  212 (313)
T ss_dssp             EEECCGGGGGCC------------------------------------------------------CSEEECCSSEEEEC
T ss_pred             cccccccccccc------------------------------------------------------cccccccccccccc
Confidence            999887776533                                                      45699999999999


Q ss_pred             CCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCccccc
Q 001036          999 IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF 1078 (1180)
Q Consensus       999 ~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~ 1078 (1180)
                      +|..++.+++++.+++++|.+++.+| .++.+++|+.|||++|+++|.+|++++++++|++||+++|+|+|.||+ ++.+
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccC
Confidence            99999999999999999999998776 688999999999999999999999999999999999999999999998 6788


Q ss_pred             ccCCccccCCCCCCCCCCCCCC
Q 001036         1079 ATFNKSSYDGNPFLCGLPLPIC 1100 (1180)
Q Consensus      1079 ~~~~~~~~~~N~~lc~~~l~~c 1100 (1180)
                      .+++..++.||+.+||.|++.|
T Consensus       291 ~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCC
T ss_pred             CCCCHHHhCCCccccCCCCCCC
Confidence            9999999999999999998777

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2.6e-30  Score=286.79  Aligned_cols=254  Identities=30%  Similarity=0.508  Sum_probs=191.7

Q ss_pred             cCceeeccCCcccc--cCCCcCCCCCCCcEEECcC-CcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEE
Q 001036          739 NLRWLLLEGNHFVG--EIPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL  815 (1180)
Q Consensus       739 ~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  815 (1180)
                      +++.|+|++|.+.|  .+|..++++++|++|++++ |+++|.+|.+++++++|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            45666666666665  3566777777777777765 66777777777777777777777777777777777777777777


Q ss_pred             EccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCC-CEEecCCCcc
Q 001036          816 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL-SHLNLAHNNL  894 (1180)
Q Consensus       816 ~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~L~~N~l  894 (1180)
                      ++++|.+.+.+|.                        .+.+++.++.+++++|.+++.+|..+..+.++ +.+++++|++
T Consensus       131 ~l~~N~~~~~~p~------------------------~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         131 DFSYNALSGTLPP------------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCCG------------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ccccccccccCch------------------------hhccCcccceeeccccccccccccccccccccccccccccccc
Confidence            7777776654443                        56667777777777777777777777777665 6777888888


Q ss_pred             ccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccch
Q 001036          895 EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA  974 (1180)
Q Consensus       895 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  974 (1180)
                      ++..|..+..+..+ .+++++|.+.|.+|..+..++                                            
T Consensus       187 ~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~--------------------------------------------  221 (313)
T d1ogqa_         187 TGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDK--------------------------------------------  221 (313)
T ss_dssp             EEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTS--------------------------------------------
T ss_pred             cccccccccccccc-ccccccccccccccccccccc--------------------------------------------
Confidence            87777777766544 688888888877776665433                                            


Q ss_pred             hcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCC
Q 001036          975 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 1054 (1180)
Q Consensus       975 ~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l 1054 (1180)
                               .++.+++++|.+++.+| .++.+++|++|+|++|+++|.+|+.|+++++|+.|||++|+|+|.+|+ ++++
T Consensus       222 ---------~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         222 ---------NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             ---------CCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             ---------ccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccC
Confidence                     67788888888887655 578888899999999999999999999999999999999999998885 5788


Q ss_pred             CCCCEEEcCCCc-Cccc-CC
Q 001036         1055 NTLAIFIVAYNN-LSGK-IP 1072 (1180)
Q Consensus      1055 ~~L~~l~ls~N~-l~g~-ip 1072 (1180)
                      ++|+.+++++|+ +.|. +|
T Consensus       291 ~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSS
T ss_pred             CCCCHHHhCCCccccCCCCC
Confidence            889999999987 6664 44

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.8e-25  Score=256.37  Aligned_cols=342  Identities=23%  Similarity=0.288  Sum_probs=201.2

Q ss_pred             cCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcE
Q 001036          614 NNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQF  693 (1180)
Q Consensus       614 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~  693 (1180)
                      .+.+|++|+++++.++..  ..+..+++|++|++++|+++ .+|. +. .+++|++|++++|.+.+..  .++++++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~-l~-~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc-cc-CCccccccccccccccccc--cccccccccc
Confidence            445566666666665542  23445556666666666655 3332 22 2556666666666655432  2555556666


Q ss_pred             EEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCc
Q 001036          694 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN  773 (1180)
Q Consensus       694 L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~  773 (1180)
                      |++++|.+++ ++...  ....+.......|.+....+..................     ...+...+.........|.
T Consensus       115 L~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         115 LTLFNNQITD-IDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-----LKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             EECCSSCCCC-CGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-----CGGGTTCTTCCEEECCSSC
T ss_pred             cccccccccc-ccccc--ccccccccccccccccccccccccccccccccccccch-----hhhhccccccccccccccc
Confidence            6665555542 22211  23444555555444433222222111111111111111     1122223333333333333


Q ss_pred             CCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCccc
Q 001036          774 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT  853 (1180)
Q Consensus       774 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~  853 (1180)
                      ..  .+..+..+++++.+++++|.+++..|  +...++|+.|++++|+++                       . ++  .
T Consensus       187 ~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-----------------------~-~~--~  236 (384)
T d2omza2         187 VS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------D-IG--T  236 (384)
T ss_dssp             CC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------C-CG--G
T ss_pred             cc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-----------------------C-cc--h
Confidence            32  22333444455555555554443322  223344444444444443                       2 22  4


Q ss_pred             ccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036          854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE  933 (1180)
Q Consensus       854 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  933 (1180)
                      +..+++|+.|++++|.+++..|  ++.+++|++|++++|++++..  .+..++.++.+++++|++++..  .+.      
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~~------  304 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PIS------  304 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GGG------
T ss_pred             hhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--ccc------
Confidence            6777888888888888886543  777888899999888887543  3677888888888888887531  111      


Q ss_pred             ccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEe
Q 001036          934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 1013 (1180)
Q Consensus       934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ 1013 (1180)
                                                                     .++.++.|++++|++++..  .+..+++|++|+
T Consensus       305 -----------------------------------------------~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~  335 (384)
T d2omza2         305 -----------------------------------------------NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLF  335 (384)
T ss_dssp             -----------------------------------------------GCTTCSEEECCSSCCSCCG--GGGGCTTCCEEE
T ss_pred             -----------------------------------------------hhcccCeEECCCCCCCCCc--ccccCCCCCEEE
Confidence                                                           1346888999999998653  388899999999


Q ss_pred             CccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCC
Q 001036         1014 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 1065 (1180)
Q Consensus      1014 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N 1065 (1180)
                      +++|+|++ +| .|+++++|+.||+++|+|++.+|  +.++++|+.|++++|
T Consensus       336 L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         336 FANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99999985 44 68899999999999999997665  888999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=5.8e-24  Score=243.57  Aligned_cols=186  Identities=25%  Similarity=0.381  Sum_probs=147.0

Q ss_pred             cccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEEC
Q 001036          834 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL  913 (1180)
Q Consensus       834 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  913 (1180)
                      .++.+++++|.+++..   .+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+++..+  +..+++|++|++
T Consensus       198 ~~~~l~l~~n~i~~~~---~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l  270 (384)
T d2omza2         198 NLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL  270 (384)
T ss_dssp             TCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             ccceeeccCCccCCCC---cccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeec
Confidence            4445555555444332   245678899999999999853  468899999999999999986543  788999999999


Q ss_pred             cCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCC
Q 001036          914 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN  993 (1180)
Q Consensus       914 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  993 (1180)
                      ++|++++..+  +..                                                     ++.++.++++.|
T Consensus       271 ~~~~l~~~~~--~~~-----------------------------------------------------~~~l~~l~~~~n  295 (384)
T d2omza2         271 GANQISNISP--LAG-----------------------------------------------------LTALTNLELNEN  295 (384)
T ss_dssp             CSSCCCCCGG--GTT-----------------------------------------------------CTTCSEEECCSS
T ss_pred             cCcccCCCCc--ccc-----------------------------------------------------cccccccccccc
Confidence            9999886543  221                                                     236788999999


Q ss_pred             cccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036          994 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus       994 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      ++++  +..+..+++++.|++++|++++..|  +..+++|+.|++++|+|++ +| .+.++++|++|++++|++++.+| 
T Consensus       296 ~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         296 QLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             CCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-
T ss_pred             cccc--ccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-
Confidence            9986  3458899999999999999997654  8899999999999999985 44 69999999999999999998665 


Q ss_pred             cccccccCCccccCCC
Q 001036         1074 WTAQFATFNKSSYDGN 1089 (1180)
Q Consensus      1074 ~~~~~~~~~~~~~~~N 1089 (1180)
                       +..+..+...++.+|
T Consensus       369 -l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 -LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GTTCTTCSEEECCCE
T ss_pred             -hccCCCCCEeeCCCC
Confidence             566666666666665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7.7e-24  Score=233.36  Aligned_cols=206  Identities=24%  Similarity=0.344  Sum_probs=121.9

Q ss_pred             cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEEC
Q 001036          690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL  769 (1180)
Q Consensus       690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l  769 (1180)
                      ..+.++-+++.++ ++|..+.   +++++|++++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            4556666666666 6666542   46677777777776555556667777777777777777666666777777777777


Q ss_pred             cCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccccc
Q 001036          770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL  849 (1180)
Q Consensus       770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~  849 (1180)
                      ++|+++ .+|..+  ...++.|++.+|.+.+..+..+.....+..++...|.....                     ...
T Consensus        87 ~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~---------------------~~~  142 (305)
T d1xkua_          87 SKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIE  142 (305)
T ss_dssp             CSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBC
T ss_pred             cCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhcccccccccccccccccc---------------------CCC
Confidence            777766 344432  24566666666666655555555555555555555543211                     011


Q ss_pred             CcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCcc
Q 001036          850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  927 (1180)
Q Consensus       850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  927 (1180)
                       ...|..+++|+.+++++|.++. +|..+  +++|+.|++++|...+..+..+.+++.+++|++++|++++..+..|.
T Consensus       143 -~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~  216 (305)
T d1xkua_         143 -NGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  216 (305)
T ss_dssp             -TTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             -ccccccccccCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccc
Confidence             1145556666666666666653 33322  35566666666666665666666666666666666666555544443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.1e-23  Score=227.44  Aligned_cols=250  Identities=25%  Similarity=0.353  Sum_probs=153.3

Q ss_pred             CccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEE
Q 001036          641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS  720 (1180)
Q Consensus       641 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~  720 (1180)
                      ..+.+|.+++.++ ++|..+   .+++++|++++|+++...+.+|.++++|++|++++|.+. .++...+.++++|++|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence            4556677776666 666544   245666666666666555555666666666666666665 33333334455555555


Q ss_pred             ccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcC--
Q 001036          721 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL--  798 (1180)
Q Consensus       721 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l--  798 (1180)
                      +++|+++..                         |..  ....+..|++.+|.+.+..+..+.....++.++...|..  
T Consensus        86 l~~n~l~~l-------------------------~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~  138 (305)
T d1xkua_          86 LSKNQLKEL-------------------------PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  138 (305)
T ss_dssp             CCSSCCSBC-------------------------CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             ccCCccCcC-------------------------ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccc
Confidence            555554422                         221  123455555555555544444444555555555555532  


Q ss_pred             CCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhh
Q 001036          799 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI  878 (1180)
Q Consensus       799 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~  878 (1180)
                      ....+..+..+++|+.+++++|.++ .+|... ..+++.|++++|...+..+. .|.+++.++.|++++|.+++..+.+|
T Consensus       139 ~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~-~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         139 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL-PPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC-CTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             cCCCccccccccccCccccccCCcc-ccCccc-CCccCEEECCCCcCCCCChh-Hhhccccccccccccccccccccccc
Confidence            2233445566666777777777665 233332 34566666666666555554 77788888888888888888778888


Q ss_pred             hcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCc
Q 001036          879 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF  926 (1180)
Q Consensus       879 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  926 (1180)
                      .++++|++|+|++|+|+ .+|.++..+++|++|+|++|+|+...+..|
T Consensus       216 ~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         216 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             cccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhc
Confidence            88888888888888887 567778888888888888888876544444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-23  Score=228.06  Aligned_cols=210  Identities=25%  Similarity=0.255  Sum_probs=115.1

Q ss_pred             CCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEEC
Q 001036          786 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL  865 (1180)
Q Consensus       786 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L  865 (1180)
                      +++++|++++|++++..+..|.++++|++|++++|++.+..+.                        .+.+++.+..++.
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~------------------------~~~~~~~~~~l~~   87 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA------------------------AFTGLALLEQLDL   87 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT------------------------TTTTCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccc------------------------ccccccccccccc
Confidence            3455555555555544445555666666666666655532222                        3334444444443


Q ss_pred             c-CccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCC
Q 001036          866 S-YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP  944 (1180)
Q Consensus       866 ~-~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~  944 (1180)
                      . .|.++...|..|.++++|++|++++|.+.+..+..+...++|+.+++++|++++..+..|.+++              
T Consensus        88 ~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~--------------  153 (284)
T d1ozna_          88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG--------------  153 (284)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--------------
T ss_pred             ccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcccc--------------
Confidence            2 3334444455555555555555555555544444555555555555555555554444443322              


Q ss_pred             CccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcccccccccc
Q 001036          945 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 1024 (1180)
Q Consensus       945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p 1024 (1180)
                                                             .|+.|++++|++++..|..|.++++|+.+++++|++++..|
T Consensus       154 ---------------------------------------~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~  194 (284)
T d1ozna_         154 ---------------------------------------NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP  194 (284)
T ss_dssp             ---------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             ---------------------------------------chhhcccccCcccccchhhhccccccchhhhhhccccccCh
Confidence                                                   45555666666655555556666666666666666666666


Q ss_pred             ccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCC
Q 001036         1025 LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus      1025 ~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
                      ..|.++++|+.||+++|++++..|..|.++++|+++++++|++.+..+
T Consensus       195 ~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            666666666666666666665555566666666666666666655443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-23  Score=229.22  Aligned_cols=206  Identities=27%  Similarity=0.252  Sum_probs=107.5

Q ss_pred             cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeecc-CCcccccCCCcCCCCCCCcEEE
Q 001036          690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLE-GNHFVGEIPQSLSKCSSLKGLY  768 (1180)
Q Consensus       690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~p~~~~~l~~L~~L~  768 (1180)
                      .+++|+|++|+++ .+|...+.++++|++|++++|++....+..+..++.++.+... .|.+....|..|.++++|++|+
T Consensus        33 ~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            3455555555554 4444434444555555555555544444444444444444432 2333333344444444444444


Q ss_pred             CcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccc
Q 001036          769 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ  848 (1180)
Q Consensus       769 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~  848 (1180)
                      +++|.+....+..+...++|+.+++++|++++..+..|..+++|+.|++++|++.                        .
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~------------------------~  167 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS------------------------S  167 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------E
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc------------------------c
Confidence            4444444333334444444444444444444433444444444444444444443                        2


Q ss_pred             cCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcc
Q 001036          849 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG  920 (1180)
Q Consensus       849 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  920 (1180)
                      +++.+|.++++|+.+++++|++++..|.+|.++++|++|++++|++.+..|..|..+++|++|++++|++.+
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            233356666666666666666666666666666666666666666666666666666666666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.7e-22  Score=210.79  Aligned_cols=202  Identities=26%  Similarity=0.327  Sum_probs=128.2

Q ss_pred             CCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEE
Q 001036          808 RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL  887 (1180)
Q Consensus       808 ~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  887 (1180)
                      +...+.+++.+++.++ .+|..+ +.++++|+|++|.+++ +|.++|.++++|++|+|++|+|+. +| .++.+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~l-p~~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDL-PKDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCC-CTTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCc-CcCCCEEECcCCcCCC-cCHHHhhccccccccccccccccc-cc-ccccccccccc
Confidence            3455666777777777 456543 3466677777776653 444466677777777777777663 33 24566677777


Q ss_pred             ecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhh
Q 001036          888 NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE  967 (1180)
Q Consensus       888 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  967 (1180)
                      +|++|++++ .+..+..+++|++|++++|.+.+..+..+..+                                      
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--------------------------------------  123 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------------------------------------  123 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC--------------------------------------
T ss_pred             ccccccccc-cccccccccccccccccccccceeeccccccc--------------------------------------
Confidence            777777663 45566666677777777766665544443322                                      


Q ss_pred             hccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccC
Q 001036          968 FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047 (1180)
Q Consensus       968 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i 1047 (1180)
                                     ..++.|++++|.+++..+..+..++.|+.|++++|++++..|+.|+.+++|+.|||++|+|+ .+
T Consensus       124 ---------------~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         124 ---------------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             ---------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ---------------cccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence                           25666667777666655566666666777777777776666666666667777777777766 66


Q ss_pred             CccccCCCCCCEEEcCCCcCcc
Q 001036         1048 PRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus      1048 p~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
                      |+++.+++.|+.|++++|++.+
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCC
T ss_pred             ChhHCCCCCCCEEEecCCCCCC
Confidence            6666666666666666665544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.7e-21  Score=207.28  Aligned_cols=202  Identities=26%  Similarity=0.231  Sum_probs=161.2

Q ss_pred             CCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEc
Q 001036          761 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL  840 (1180)
Q Consensus       761 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l  840 (1180)
                      ...+.+.+.+++.++ .+|+.+.  +++++|+|++|++++..+..|.++++|++|++++|+++.                
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~----------------   69 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----------------   69 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE----------------
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc----------------
Confidence            344555677777766 4565543  467777777777776666677778888888888887752                


Q ss_pred             CCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcc
Q 001036          841 SKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG  920 (1180)
Q Consensus       841 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  920 (1180)
                              +|  .+..+++|+.|+|++|++++ .|..+.++++|+.|++++|.+.+..+..+..+.++++|++++|.+++
T Consensus        70 --------l~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~  138 (266)
T d1p9ag_          70 --------LQ--VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT  138 (266)
T ss_dssp             --------EE--CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             --------cc--cccccccccccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccce
Confidence                    22  24567888888888888874 46678888999999999999888888888889999999999999987


Q ss_pred             cCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCC
Q 001036          921 LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 1000 (1180)
Q Consensus       921 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p 1000 (1180)
                      ..+..+..++                                                     .++.+++++|+|++..|
T Consensus       139 l~~~~~~~l~-----------------------------------------------------~l~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_         139 LPPGLLTPTP-----------------------------------------------------KLEKLSLANNNLTELPA  165 (266)
T ss_dssp             CCTTTTTTCT-----------------------------------------------------TCCEEECTTSCCSCCCT
T ss_pred             eccccccccc-----------------------------------------------------cchhcccccccccccCc
Confidence            7776665433                                                     68899999999998888


Q ss_pred             ccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCccc
Q 001036         1001 PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 1046 (1180)
Q Consensus      1001 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ 1046 (1180)
                      ..|..+++|++|||++|+|+ .+|+.+..+++|+.|+|++|.+.+.
T Consensus       166 ~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            88999999999999999999 8899888999999999999998753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=8e-17  Score=181.05  Aligned_cols=219  Identities=27%  Similarity=0.261  Sum_probs=103.6

Q ss_pred             ccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEc
Q 001036          642 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL  721 (1180)
Q Consensus       642 L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L  721 (1180)
                      +++||++++.++ .+|+    .+++|++|++++|+++ .+|..+   .+|+.|++++|+++ .+++.    .+.|++|++
T Consensus        40 l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l----p~~L~~L~L  105 (353)
T d1jl5a_          40 AHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL----PPLLEYLGV  105 (353)
T ss_dssp             CSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC----CTTCCEEEC
T ss_pred             CCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh----ccccccccc
Confidence            445555555554 4553    1355666666666665 344432   34556666666555 44321    134555555


Q ss_pred             cCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCC
Q 001036          722 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP  801 (1180)
Q Consensus       722 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  801 (1180)
                      ++|.++.. |. ++.+++|++|++++|.+....+    ....+..+.+..+...  .+..++.++.++.+.+++|.....
T Consensus       106 ~~n~l~~l-p~-~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         106 SNNQLEKL-PE-LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CSSCCSSC-CC-CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             cccccccc-cc-hhhhccceeecccccccccccc----ccccccchhhcccccc--ccccccccccceeccccccccccc
Confidence            55555422 22 3445555555555554442211    1233444444433332  122333444444444444443321


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcC
Q 001036          802 IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL  881 (1180)
Q Consensus       802 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l  881 (1180)
                      . ..   ....+.                       +....+.+. .++  .+..++.|+.+++++|.... +|.   ..
T Consensus       178 ~-~~---~~~~~~-----------------------l~~~~~~~~-~~~--~~~~l~~L~~l~l~~n~~~~-~~~---~~  223 (353)
T d1jl5a_         178 P-DL---PLSLES-----------------------IVAGNNILE-ELP--ELQNLPFLTTIYADNNLLKT-LPD---LP  223 (353)
T ss_dssp             C-CC---CTTCCE-----------------------EECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSS-CCS---CC
T ss_pred             c-cc---cccccc-----------------------ccccccccc-ccc--cccccccccccccccccccc-ccc---cc
Confidence            1 10   111122                       222222221 222  34567778888888777653 332   34


Q ss_pred             CCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcc
Q 001036          882 SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG  920 (1180)
Q Consensus       882 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  920 (1180)
                      .++..+.+.+|.+... +.   ....+...++..+.+.+
T Consensus       224 ~~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~  258 (353)
T d1jl5a_         224 PSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSG  258 (353)
T ss_dssp             TTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSE
T ss_pred             cccccccccccccccc-cc---ccccccccccccccccc
Confidence            5567777777776532 22   23456667777666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=3.9e-16  Score=175.33  Aligned_cols=304  Identities=26%  Similarity=0.312  Sum_probs=189.7

Q ss_pred             CCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceee
Q 001036          665 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL  744 (1180)
Q Consensus       665 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  744 (1180)
                      .++++|++++|.++ .+|+.   .++|++|++++|+++ .+|+.    ..+|+.|++++|+++.. +. +  .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCC-CS-C--CTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccchh-hh-h--cccccccc
Confidence            36888889888887 46653   457888888888887 77753    45788888888887632 21 1  13577788


Q ss_pred             ccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 001036          745 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG  824 (1180)
Q Consensus       745 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  824 (1180)
                      +++|.+.. +|. ++.+++|+.|++++|.+.. .|.   ....+..+.+..+...  .+..+..++.++.+++++|....
T Consensus       105 L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         105 VSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCSS-CCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccccc-ccc-hhhhccceeeccccccccc-ccc---ccccccchhhcccccc--ccccccccccceecccccccccc
Confidence            88877763 443 5667777777777777653 222   2345556666555443  23445556666777766666542


Q ss_pred             cCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccC
Q 001036          825 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR  904 (1180)
Q Consensus       825 ~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  904 (1180)
                                              ++.    .....+.+..+++.+. .+| .+..++.|+.+++++|.... +|.   .
T Consensus       177 ------------------------~~~----~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~  222 (353)
T d1jl5a_         177 ------------------------LPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---L  222 (353)
T ss_dssp             ------------------------CCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---C
T ss_pred             ------------------------ccc----cccccccccccccccc-ccc-cccccccccccccccccccc-ccc---c
Confidence                                    111    1223456777766665 344 35778999999999998763 443   3


Q ss_pred             CCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccc
Q 001036          905 LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL  984 (1180)
Q Consensus       905 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  984 (1180)
                      ..++..+++.+|.+.... .....+..........                               .+..     .....
T Consensus       223 ~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~-------------------------------~~l~-----~l~~~  265 (353)
T d1jl5a_         223 PPSLEALNVRDNYLTDLP-ELPQSLTFLDVSENIF-------------------------------SGLS-----ELPPN  265 (353)
T ss_dssp             CTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCC-------------------------------SEES-----CCCTT
T ss_pred             cccccccccccccccccc-cccccccccccccccc-------------------------------cccc-----cccch
Confidence            467888999999887532 2222222111000000                               0000     00113


Q ss_pred             cceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCC
Q 001036          985 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAY 1064 (1180)
Q Consensus       985 L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~ 1064 (1180)
                      ....+++.|.+.+.    ...+++|++|+|++|+|+ .+|+.   +++|+.|+|++|+|+ .+|+.   +.+|+.|++++
T Consensus       266 ~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~  333 (353)
T d1jl5a_         266 LYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEY  333 (353)
T ss_dssp             CCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCS
T ss_pred             hcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcC
Confidence            44566666666532    234567888888888888 56754   467888888888888 67754   45688888888


Q ss_pred             CcCcccCCC
Q 001036         1065 NNLSGKIPE 1073 (1180)
Q Consensus      1065 N~l~g~ip~ 1073 (1180)
                      |+|+ .+|.
T Consensus       334 N~L~-~lp~  341 (353)
T d1jl5a_         334 NPLR-EFPD  341 (353)
T ss_dssp             SCCS-SCCC
T ss_pred             CcCC-CCCc
Confidence            8887 5665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=2.8e-17  Score=165.72  Aligned_cols=174  Identities=24%  Similarity=0.271  Sum_probs=92.2

Q ss_pred             EEECcCccCccccchhhhcCCCCCEEecCCCccccCC-CccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCC
Q 001036          862 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV-PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS  940 (1180)
Q Consensus       862 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~  940 (1180)
                      .++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|.++++|+.|+|++|++++.++..|..++          
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~----------   78 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS----------   78 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT----------
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc----------
Confidence            4555555555 3333321  34555555555555422 34455555666666666665555555544322          


Q ss_pred             CCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcccccc
Q 001036          941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT 1020 (1180)
Q Consensus       941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1020 (1180)
                                                                 .|+.|+|++|+|++..|..|.++++|++|+|++|+|+
T Consensus        79 -------------------------------------------~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~  115 (192)
T d1w8aa_          79 -------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             -------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             -------------------------------------------ccceeeeccccccccCHHHHhCCCcccccccCCcccc
Confidence                                                       4555666666666555556666666666666666666


Q ss_pred             ccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCC
Q 001036         1021 GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGL 1095 (1180)
Q Consensus      1021 g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~ 1095 (1180)
                      +..|++|..+++|++|+|++|.+.+..+.... ...+..+.+..|.+.+..|...   ....-.++..|.+.|..
T Consensus       116 ~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~-~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         116 CVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             EECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCCCC
T ss_pred             ccCHHHhcCCcccccccccccccccccchHHH-hhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcCCC
Confidence            66666666666666666666666544332111 1123344455566655555422   22223345555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.2e-17  Score=170.74  Aligned_cols=220  Identities=17%  Similarity=0.138  Sum_probs=133.2

Q ss_pred             cEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcc
Q 001036          765 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNM  844 (1180)
Q Consensus       765 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~  844 (1180)
                      +.++.++..++ .+|+.+.  +++++|++++|+++...+..|.++++|++|++++|.+...                   
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~-------------------   68 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV-------------------   68 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCE-------------------
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccce-------------------
Confidence            34555555554 4444332  3556666666666544444566666666666666665432                   


Q ss_pred             cccccCcccccCCCCCcEEECc-CccCccccchhhhcCCCCCEEecCCCccccCCCc-cccCCCCCCEEECcCCcCcccC
Q 001036          845 LHGQLKEGTFFNCSSLVTLDLS-YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI-QLCRLNQLQLLDLSDNNLHGLI  922 (1180)
Q Consensus       845 ~~~~~~~~~~~~~~~L~~L~L~-~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~  922 (1180)
                          ++..+|.++++++.+++. .|.+....+..|.++++|+++++++|.+....+. .+..+..+..+..+++.+....
T Consensus        69 ----i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          69 ----IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             ----ECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC
T ss_pred             ----eeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence                333356667777777654 3566666667777777777777777777643222 2333455555566666666554


Q ss_pred             CCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCcc
Q 001036          923 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 1002 (1180)
Q Consensus       923 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~ 1002 (1180)
                      +..|..+.                                                    ..++.|++++|+++...+..
T Consensus       145 ~~~~~~~~----------------------------------------------------~~l~~L~l~~n~l~~i~~~~  172 (242)
T d1xwdc1         145 RNSFVGLS----------------------------------------------------FESVILWLNKNGIQEIHNCA  172 (242)
T ss_dssp             TTSSTTSB----------------------------------------------------SSCEEEECCSSCCCEECTTT
T ss_pred             cccccccc----------------------------------------------------ccceeeeccccccccccccc
Confidence            44443322                                                    14667888888888544444


Q ss_pred             ccCCCCCC-EEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036         1003 IGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus      1003 ~~~l~~L~-~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      +. ...++ .+++++|+++...+..|.++++|+.|||++|+|+...+..|.++..|+++++.
T Consensus       173 ~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         173 FN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            43 44444 44577788885555668888888888888888885555567777777666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=6.1e-17  Score=168.52  Aligned_cols=57  Identities=21%  Similarity=0.413  Sum_probs=25.5

Q ss_pred             ccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036         1003 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus      1003 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      ++++++|+.|||++|++++. | .++++++|+.|+|++|++++. | .+.+++.|++|+++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             hcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence            34444444444444444432 2 144444555555555554432 2 14444555555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=2.5e-17  Score=165.99  Aligned_cols=158  Identities=20%  Similarity=0.228  Sum_probs=91.8

Q ss_pred             CCCcEEECcCccCcc-ccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccC
Q 001036          858 SSLVTLDLSYNYLNG-SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN  936 (1180)
Q Consensus       858 ~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  936 (1180)
                      +++++|+|++|+|++ ..+..|+++++|+.|+|++|++.+..+..+..+++|++|+|++|++++..|..|.+++      
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~------  102 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH------  102 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT------
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCC------
Confidence            355556666666654 2344555666666666666666655566666666666666666666665555555433      


Q ss_pred             CCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcc
Q 001036          937 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 1016 (1180)
Q Consensus       937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~ 1016 (1180)
                                                                     .|+.|+|++|+|++..|..|..+++|++|+|++
T Consensus       103 -----------------------------------------------~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_         103 -----------------------------------------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             -----------------------------------------------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             -----------------------------------------------cccccccCCccccccCHHHhcCCcccccccccc
Confidence                                                           566666666666665566666666666666666


Q ss_pred             ccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCC
Q 001036         1017 NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus      1017 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
                      |.+....+.... ...++.+.+..|.+++..|..+.   .+..++++.|++....+
T Consensus       136 N~~~~~~~~~~~-~~~l~~~~l~~~~~~c~~p~~l~---~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         136 NPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSKVR---DVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTTTT---TSBGGGSCTTTCCCCCC
T ss_pred             cccccccchHHH-hhhhhhhcccCCCeEeCCChhhc---CCEeeecCHhhCcCCCC
Confidence            666643332111 12344556666777766665543   34566777777765444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.6e-18  Score=203.01  Aligned_cols=383  Identities=21%  Similarity=0.156  Sum_probs=212.9

Q ss_pred             CccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCc----cCCccccCcccCcEEEccCcccccc----cChhhhhc
Q 001036          641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGE----IPDHLAMC  712 (1180)
Q Consensus       641 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~----ip~~~~~~  712 (1180)
                      +|+.||+++|++++..-..+...++++++|+|++|.++.    .++.++..+++|+.|+|++|+++..    +...+...
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            466777777777642222333446777888888887763    2345566777788888888777521    11111112


Q ss_pred             CCCCCEEEccCCccccc----ccccccCCccCceeeccCCcccccCCCc----C-CCCCCCcEEECcCCcCCCCC----c
Q 001036          713 CVNLEFLSLSNNSLKGH----IFSRIFSLRNLRWLLLEGNHFVGEIPQS----L-SKCSSLKGLYLNNNNLSGKI----P  779 (1180)
Q Consensus       713 ~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~----~-~~l~~L~~L~l~~n~l~~~~----p  779 (1180)
                      ..+|++|++++|+++..    ++..+..+++|++|++++|.+.......    + ...............+....    -
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            34677788877777643    3445666777777777777765321111    1 11222333343333322110    0


Q ss_pred             ccccCCCCCCeEEccCCcCCCCC----Cccc-cCCCCCCEEEccCCcccccCC-----CCcCCCcccEEEcCCcccccc-
Q 001036          780 RWLGNLKGLQHIVMPKNHLEGPI----PVEF-CRLDSLQILDISDNNISGSLP-----SCFYPLSIKQVHLSKNMLHGQ-  848 (1180)
Q Consensus       780 ~~~~~l~~L~~L~l~~n~l~~~~----~~~~-~~l~~L~~L~l~~n~l~~~~p-----~~~~~~~L~~L~l~~n~~~~~-  848 (1180)
                      ..+.....++.++++.+......    ...+ ........+++..+.+...--     .......++.+++++|..... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            11233456666666665443110    0001 112344556666655431100     001224566666666654321 


Q ss_pred             ---cCcccccCCCCCcEEECcCccCccc----cchhhhcCCCCCEEecCCCccccCCCccc-----cCCCCCCEEECcCC
Q 001036          849 ---LKEGTFFNCSSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLAHNNLEGEVPIQL-----CRLNQLQLLDLSDN  916 (1180)
Q Consensus       849 ---~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~Ls~N  916 (1180)
                         .....+.....++.+++++|.+...    ....+...+.++.+++++|.++......+     .....|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               1111344556777888888777643    22344566778888888887753222221     23456778888877


Q ss_pred             cCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCccc
Q 001036          917 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV  996 (1180)
Q Consensus       917 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  996 (1180)
                      .++......+.+.                                                 ......|+.|||++|+++
T Consensus       323 ~l~~~~~~~l~~~-------------------------------------------------~~~~~~L~~L~Ls~N~i~  353 (460)
T d1z7xw1         323 SFTAACCSHFSSV-------------------------------------------------LAQNRFLLELQISNNRLE  353 (460)
T ss_dssp             CCBGGGHHHHHHH-------------------------------------------------HHHCSSCCEEECCSSBCH
T ss_pred             chhhhhhhhcccc-------------------------------------------------cccccchhhhheeeeccc
Confidence            7653321111100                                                 011346889999999886


Q ss_pred             CC----CCcccc-CCCCCCEEeCcccccccc----ccccccCCCCCCEEECcCCcCcccCCcccc-----CCCCCCEEEc
Q 001036          997 GH----IPPQIG-NLTRIQTLNLSHNNLTGT----IPLTFSNLRHIESLDLSYNKLSGKIPRQLV-----DLNTLAIFIV 1062 (1180)
Q Consensus       997 g~----~p~~~~-~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~-----~l~~L~~l~l 1062 (1180)
                      ..    ++..+. ..+.|++|+|++|+|+..    +++.+...++|++|||++|+|+......+.     +...|+.|++
T Consensus       354 ~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l  433 (460)
T d1z7xw1         354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL  433 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             CcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEEC
Confidence            43    333333 456799999999999743    455667778999999999998865444432     3346889999


Q ss_pred             CCCcCcccCC
Q 001036         1063 AYNNLSGKIP 1072 (1180)
Q Consensus      1063 s~N~l~g~ip 1072 (1180)
                      .+|++....+
T Consensus       434 ~~~~~~~~~~  443 (460)
T d1z7xw1         434 YDIYWSEEME  443 (460)
T ss_dssp             TTCCCCHHHH
T ss_pred             CCCCCCHHHH
Confidence            9988875443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.6e-17  Score=170.51  Aligned_cols=219  Identities=16%  Similarity=0.170  Sum_probs=117.5

Q ss_pred             cEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEcc
Q 001036          643 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS  722 (1180)
Q Consensus       643 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~  722 (1180)
                      +.++.++..++ .+|..+.   +++++|++++|.++...+.+|.++++|++|++++|.+...++...+.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            46667776666 6776542   4677777777777766666777777777777777777655665555556666666654


Q ss_pred             C-CcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCC
Q 001036          723 N-NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP  801 (1180)
Q Consensus       723 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  801 (1180)
                      . |.+....+..|.++++|+++++++|.+....+.  .                     .+..+..+..+...++.+...
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~--~---------------------~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV--H---------------------KIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCC--T---------------------TTCBSSCEEEEEESCTTCCEE
T ss_pred             ccccccccccccccccccccccccchhhhcccccc--c---------------------ccccccccccccccccccccc
Confidence            3 455555555555555555555555555432111  1                     122233333344444444434


Q ss_pred             CCccccCCC-CCCEEEccCCcccccCCCCcCCCcccEEE-cCCcccccccCcccccCCCCCcEEECcCccCccccchhhh
Q 001036          802 IPVEFCRLD-SLQILDISDNNISGSLPSCFYPLSIKQVH-LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID  879 (1180)
Q Consensus       802 ~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~~L~~L~-l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~  879 (1180)
                      .+..|.+++ .++.|++++|+++...+..+....++++. +++|.++ .+|...|.++++|++|++++|+++...+..|.
T Consensus       144 ~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  222 (242)
T d1xwdc1         144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE  222 (242)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred             cccccccccccceeeecccccccccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence            444444443 56667777777664333333333333332 2233332 34444455555555555555555544344444


Q ss_pred             cCCCCCEEec
Q 001036          880 GLSQLSHLNL  889 (1180)
Q Consensus       880 ~l~~L~~L~L  889 (1180)
                      ++++|+.+++
T Consensus       223 ~l~~L~~l~~  232 (242)
T d1xwdc1         223 NLKKLRARST  232 (242)
T ss_dssp             TCCEEESSSE
T ss_pred             CCcccccCcC
Confidence            4444444433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.2e-16  Score=161.32  Aligned_cols=52  Identities=21%  Similarity=0.376  Sum_probs=28.5

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECc
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS 1039 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls 1039 (1180)
                      .|+.|||++|++++ +| .++++++|++|+|++|++++..|  ++++++|+.|+++
T Consensus       174 ~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         174 KLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             cceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            34445555555443 22 25555666666666666664332  5666666666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.7e-17  Score=188.05  Aligned_cols=118  Identities=18%  Similarity=0.146  Sum_probs=80.0

Q ss_pred             ceEEEEeccccCCcccccccccccCCCCCCEEEccCcccCCCchhcccccccCCCCCcEEecCCCcCCCCcccccc----
Q 001036           57 RVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLA----  132 (1180)
Q Consensus        57 ~v~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~lp~~l~----  132 (1180)
                      .+.+||++++.+.+.-  -..++..++++|+|+|++|.++..........+..+++|++|||++|.++......++    
T Consensus         3 ~l~~ld~~~~~i~~~~--~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHH--HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            5788888888665421  1245567788889999988876544333445567888899999988887643222332    


Q ss_pred             C-CCCCcEEEccCccccCcc---ChhhccCCCCCCeEEccCCCCCchh
Q 001036          133 R-LSSLRSLYLSDNRLEGSI---DVKELDSLRDLEELDIGGNKIDKFM  176 (1180)
Q Consensus       133 ~-l~~L~~L~L~~~~~~~~~---~~~~l~~L~~L~~L~L~~~~l~~~~  176 (1180)
                      . ..+|++|++++|.+++..   -...+..+++|++|++++|.+....
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~  128 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG  128 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhh
Confidence            2 357889999888876431   1235677888889998888876543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.1e-15  Score=156.29  Aligned_cols=74  Identities=28%  Similarity=0.475  Sum_probs=46.0

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
                      .++.+++++|.+++  +..+..+++|+.+++++|++++..|  ++++++|+.|+|++|+++ .+| .+.++++|++|+++
T Consensus       135 ~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         135 QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccc--ccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEcc
Confidence            45556666666653  2345556667777777777764322  666777777777777776 344 46667777777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=3.9e-15  Score=150.67  Aligned_cols=142  Identities=31%  Similarity=0.473  Sum_probs=81.1

Q ss_pred             ccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036          854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE  933 (1180)
Q Consensus       854 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  933 (1180)
                      +..+++|++|++++|++++..|  ++++++|++|++++|.+.. ++ .+.+++.|+.|++++|.+....+  +..     
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~~~--~~~-----  126 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDIDP--LKN-----  126 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCGG--GTT-----
T ss_pred             cccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccccccccccccccccc--cch-----
Confidence            3445566666666666654332  5566666666666666543 22 25566666666666665543211  111     


Q ss_pred             ccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEe
Q 001036          934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 1013 (1180)
Q Consensus       934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ 1013 (1180)
                                                                      ++.|+.|++++|++.. +| .+..+++|+.|+
T Consensus       127 ------------------------------------------------l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~  156 (199)
T d2omxa2         127 ------------------------------------------------LTNLNRLELSSNTISD-IS-ALSGLTSLQQLN  156 (199)
T ss_dssp             ------------------------------------------------CTTCSEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             ------------------------------------------------hhhhHHhhhhhhhhcc-cc-cccccccccccc
Confidence                                                            2356666666666652 22 466666777777


Q ss_pred             CccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEE
Q 001036         1014 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 1060 (1180)
Q Consensus      1014 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l 1060 (1180)
                      +++|++++..  .++++++|+.|++++|+++. +| .++.+++|+.|
T Consensus       157 l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         157 FSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            7777776532  26667777777777777663 33 35666666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=5.7e-15  Score=150.76  Aligned_cols=163  Identities=25%  Similarity=0.374  Sum_probs=92.2

Q ss_pred             CCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEcc
Q 001036          715 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP  794 (1180)
Q Consensus       715 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  794 (1180)
                      +|++|++++|.++...  .+..+++|++|++++|++++..  .++.+++|++|++++|++++ +| .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            4444444444443321  2344555555555555555432  24455556666666655552 33 35555666666666


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCcccc
Q 001036          795 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI  874 (1180)
Q Consensus       795 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  874 (1180)
                      +|.+..  ...+..+++++.+++++|.+++.                        +  .+..+++|+.+++++|++++..
T Consensus       121 ~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~------------------------~--~~~~l~~L~~l~l~~n~l~~i~  172 (210)
T d1h6ta2         121 HNGISD--INGLVHLPQLESLYLGNNKITDI------------------------T--VLSRLTKLDTLSLEDNQISDIV  172 (210)
T ss_dssp             TSCCCC--CGGGGGCTTCCEEECCSSCCCCC------------------------G--GGGGCTTCSEEECCSSCCCCCG
T ss_pred             cccccc--ccccccccccccccccccccccc------------------------c--cccccccccccccccccccccc
Confidence            655542  22355556666666666655421                        1  3445667777777777776532


Q ss_pred             chhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcC
Q 001036          875 PDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD  915 (1180)
Q Consensus       875 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  915 (1180)
                        .+.++++|++|++++|+++. +| .+.++++|++|+|++
T Consensus       173 --~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 --PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             --GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             --cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence              26777777777777777763 44 477777788777763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.5e-14  Score=146.20  Aligned_cols=160  Identities=24%  Similarity=0.342  Sum_probs=80.2

Q ss_pred             CCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEc
Q 001036          714 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM  793 (1180)
Q Consensus       714 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  793 (1180)
                      .++++|++++|.++..  +.+..+++|++|++++|++++..|  ++++++|++|++++|.+.. ++ .+++++.|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccccccc
Confidence            3444444444444321  223445555555555555544322  4555555555555555542 22 2455555555555


Q ss_pred             cCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccc
Q 001036          794 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS  873 (1180)
Q Consensus       794 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  873 (1180)
                      ++|.....  ..+..+++|+.|++++|++..                        ++  .+..+++|+.|++++|++++.
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~------------------------~~--~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTISD------------------------IS--ALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCC------------------------CG--GGTTCTTCSEEECCSSCCCCC
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhcc------------------------cc--cccccccccccccccccccCC
Confidence            55555432  234455555555555555431                        11  244555666666666666543


Q ss_pred             cchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEE
Q 001036          874 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL  911 (1180)
Q Consensus       874 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  911 (1180)
                      .  .++++++|++|++++|++++ ++ .++.+++|+.|
T Consensus       166 ~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         166 K--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             G--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             c--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            2  25566666666666666653 22 35555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1e-13  Score=148.56  Aligned_cols=244  Identities=21%  Similarity=0.230  Sum_probs=123.3

Q ss_pred             CEEEccCcccCCCchhcccccccCCCCCcEEecCCCcCCCCccccccCCCCCcEEEccCccccCccChhhccCCCCCCeE
Q 001036           86 ESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEEL  165 (1180)
Q Consensus        86 ~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L  165 (1180)
                      +.+||+++.+......   ..+.  ..+..+.++...+... ........+|++||+++|.+........+.++++|++|
T Consensus         3 ~~lDLs~~~l~~~~l~---~l~~--~~~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L   76 (284)
T d2astb2           3 QTLDLTGKNLHPDVTG---RLLS--QGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL   76 (284)
T ss_dssp             SEEECTTCBCCHHHHH---HHHH--TTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             CEEECCCCCCCchHHH---HHHh--ccceEeeccccccccc-hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence            5788887766432211   1111  2355666666655432 22333456788888888876544333356777778888


Q ss_pred             EccCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCc-CCCccccccccc-ccCCCCccEEEcC
Q 001036          166 DIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNE-IDNLVVPQGLER-LSRLSKLKKLDLR  243 (1180)
Q Consensus       166 ~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~-l~~~~~~~~l~~-l~~l~~L~~L~L~  243 (1180)
                      ++++|.+.+...                       ..+.++++|++|++++|. +++.    ++.. ...+++|++|+++
T Consensus        77 ~L~~~~l~~~~~-----------------------~~l~~~~~L~~L~Ls~c~~itd~----~l~~l~~~~~~L~~L~ls  129 (284)
T d2astb2          77 SLEGLRLSDPIV-----------------------NTLAKNSNLVRLNLSGCSGFSEF----ALQTLLSSCSRLDELNLS  129 (284)
T ss_dssp             ECTTCBCCHHHH-----------------------HHHTTCTTCSEEECTTCBSCCHH----HHHHHHHHCTTCCEEECC
T ss_pred             cccccCCCcHHH-----------------------HHHhcCCCCcCcccccccccccc----ccchhhHHHHhccccccc
Confidence            877776544322                       234455666666666653 2211    1111 2345556666665


Q ss_pred             CCc-CCchh-hHHhhccCCCceeecCCccccCccchhhhcccCCCcEEeCCCC--ccccchhhccccCCCCccEEEcCCC
Q 001036          244 GNL-CNNSI-LSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN--EIDNVEVSRGYRGLRKLKSLDLSGV  319 (1180)
Q Consensus       244 ~~~-~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n--~~~~~~~~~~l~~l~~L~~L~L~~~  319 (1180)
                      +|. +++.. ...+...                        .++|+.|+++++  .+++..+......+++|++|++++|
T Consensus       130 ~c~~~~~~~~~~~~~~~------------------------~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         130 WCFDFTEKHVQVAVAHV------------------------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             CCTTCCHHHHHHHHHHS------------------------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             cccccccccchhhhccc------------------------ccccchhhhcccccccccccccccccccccccccccccc
Confidence            542 22221 1222222                        234444444433  2233333333344555555555554


Q ss_pred             ccCcchhhhhhcCCCCCCceecccCCcccccccchhhhcCCCCccEEEcCCCCCchhhHhhHhhhCCCCC
Q 001036          320 GIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLK  389 (1180)
Q Consensus       320 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~  389 (1180)
                      ...++ .....+..+++|++|++++|....... ...++++++|++|++++| +.......+...+|+|+
T Consensus       186 ~~itd-~~~~~l~~~~~L~~L~L~~C~~i~~~~-l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         186 VMLKN-DCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             TTCCG-GGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             cCCCc-hhhhhhcccCcCCEEECCCCCCCChHH-HHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            32221 223445556666666666664333222 134566777888888777 44444444444466665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.4e-13  Score=147.59  Aligned_cols=36  Identities=25%  Similarity=0.177  Sum_probs=17.9

Q ss_pred             CCCCcEEEccCC-CcccccchhhcCCCCccEEEcccc
Q 001036          465 LAHLQELYIDNN-DLRGSLPWCLANTTSLRILDVSFN  500 (1180)
Q Consensus       465 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n  500 (1180)
                      +++|++|++++| .+++.....++++++|+.|++++|
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            445555555554 344333344455555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.2e-13  Score=130.24  Aligned_cols=65  Identities=18%  Similarity=0.237  Sum_probs=37.5

Q ss_pred             ccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCccc
Q 001036          854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL  921 (1180)
Q Consensus       854 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  921 (1180)
                      |.++..+++|||++|+|+. +|..+..+++|+.|+|++|+++. ++ .+..+++|++|++++|+++..
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l   78 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRI   78 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEE
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCC
Confidence            5566666666666666663 35555566666666666666653 22 345555555555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.8e-13  Score=129.73  Aligned_cols=128  Identities=17%  Similarity=0.163  Sum_probs=98.9

Q ss_pred             hhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCc
Q 001036          878 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS  957 (1180)
Q Consensus       878 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  957 (1180)
                      |.++.++++|+|++|+|+. +|..+..+++|++|||++|+++.. + .|..                             
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~-----------------------------   61 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-D-GFPL-----------------------------   61 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-C-CCCC-----------------------------
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc-C-Cccc-----------------------------
Confidence            5677788999999999984 577777889999999999988754 2 2332                             


Q ss_pred             hhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcccccccccc-ccccCCCCCCEE
Q 001036          958 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP-LTFSNLRHIESL 1036 (1180)
Q Consensus       958 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L 1036 (1180)
                                              ++.|+.|++++|+++...+..+..+++|+.|++++|+++.... ..+..+++|+.|
T Consensus        62 ------------------------l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L  117 (162)
T d1a9na_          62 ------------------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL  117 (162)
T ss_dssp             ------------------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred             ------------------------CcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchh
Confidence                                    3378899999999986655566788999999999999884322 467888999999


Q ss_pred             ECcCCcCcccCC----ccccCCCCCCEEEc
Q 001036         1037 DLSYNKLSGKIP----RQLVDLNTLAIFIV 1062 (1180)
Q Consensus      1037 ~Ls~N~l~g~ip----~~l~~l~~L~~l~l 1062 (1180)
                      ++++|+++. .|    ..+..+++|++||-
T Consensus       118 ~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         118 CILRNPVTN-KKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             ECCSSGGGG-STTHHHHHHHHCTTCSEETT
T ss_pred             hcCCCcccc-ccchHHHHHHHCCCcCeeCC
Confidence            999998873 44    35778889998873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.3e-12  Score=119.30  Aligned_cols=85  Identities=31%  Similarity=0.436  Sum_probs=73.2

Q ss_pred             ccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccC-CccccCCCCCCEE
Q 001036          982 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI-PRQLVDLNTLAIF 1060 (1180)
Q Consensus       982 l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~l 1060 (1180)
                      ++.|+.||+++|+|+ .+|+.++.+++|++|++++|+|++ +| .++++++|+.|++++|+|+... +..+..++.|+++
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEE
Confidence            347899999999998 578889999999999999999995 45 4899999999999999998543 3578899999999


Q ss_pred             EcCCCcCcc
Q 001036         1061 IVAYNNLSG 1069 (1180)
Q Consensus      1061 ~ls~N~l~g 1069 (1180)
                      ++++|+++.
T Consensus        96 ~l~~N~i~~  104 (124)
T d1dcea3          96 NLQGNSLCQ  104 (124)
T ss_dssp             ECTTSGGGG
T ss_pred             ECCCCcCCc
Confidence            999999875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.35  E-value=4e-13  Score=149.12  Aligned_cols=268  Identities=16%  Similarity=0.199  Sum_probs=136.3

Q ss_pred             cccCCCCCCEEEccCcccCCCchhcccccccCCCCCcEEecCCCcCCC---C-------ccccccCCCCCcEEEccCccc
Q 001036           78 LFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNN---N-------VLSSLARLSSLRSLYLSDNRL  147 (1180)
Q Consensus        78 ~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~---~-------lp~~l~~l~~L~~L~L~~~~~  147 (1180)
                      .+.....|+.|+|++|.+.........+.+...++|+.|+++++....   .       +...+..+++|++|+|++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            345677888888888877655444444566777888888888765432   1       223345677788888888876


Q ss_pred             cCccC---hhhccCCCCCCeEEccCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCcCCCccc
Q 001036          148 EGSID---VKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVV  224 (1180)
Q Consensus       148 ~~~~~---~~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~  224 (1180)
                      .....   ...+..+++|++|++++|.+...........+..+..          .......+.|+.++++++.+.....
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~----------~~~~~~~~~L~~l~l~~n~i~~~~~  175 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV----------NKKAKNAPPLRSIICGRNRLENGSM  175 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHH----------HHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             ccccccchhhhhcccccchheeccccccccccccccccccccccc----------ccccccCcccceeeccccccccccc
Confidence            54311   1234456778888887777643221111010100000          0011233455555555555443332


Q ss_pred             ccccccccCCCCccEEEcCCCcCCchhhHHhhccCCCceeecCCccccCccchhhhcccCCCcEEeCCCCccccch---h
Q 001036          225 PQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVE---V  301 (1180)
Q Consensus       225 ~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~---~  301 (1180)
                      ......+..++.|++|++++|.+.......                    .....+..+++|++|++++|.++...   +
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~--------------------~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEH--------------------LLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHH--------------------HHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             ccccchhhhhhhhccccccccccccccccc--------------------chhhhhcchhhhcccccccccccccccccc
Confidence            222223444455555555555444321100                    00122334455555555555543322   2


Q ss_pred             hccccCCCCccEEEcCCCccCcc--hhhhhhcC--CCCCCceecccCCccccccc--chhhh-cCCCCccEEEcCCCCCc
Q 001036          302 SRGYRGLRKLKSLDLSGVGIRDG--NKLLQSMG--SFPSLNTLHLESNNFTATLT--TTQEL-HNFTNLEYLTLDDSSLH  374 (1180)
Q Consensus       302 ~~~l~~l~~L~~L~L~~~~~~~~--~~~~~~l~--~l~~L~~L~L~~~~~~~~~~--~~~~~-~~l~~L~~L~L~~~~~~  374 (1180)
                      ...+..+++|++|++++|.+.+.  ..+...+.  ..+.|++|++++|.+.....  ....+ .+++.|++|++++|.+.
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            23445556666666666655432  12223332  23567777777776543210  11222 25677888888888775


Q ss_pred             h
Q 001036          375 I  375 (1180)
Q Consensus       375 ~  375 (1180)
                      .
T Consensus       316 ~  316 (344)
T d2ca6a1         316 E  316 (344)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=2.4e-12  Score=117.54  Aligned_cols=55  Identities=35%  Similarity=0.522  Sum_probs=29.0

Q ss_pred             EEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCc
Q 001036          862 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH  919 (1180)
Q Consensus       862 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  919 (1180)
                      +|||++|+++ .+| .++.+++|++|++++|+++ .+|..++.+++|++|++++|+++
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~   56 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE   56 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc
Confidence            4555555555 223 2555555555555555555 34444555555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.32  E-value=4e-12  Score=140.90  Aligned_cols=143  Identities=22%  Similarity=0.277  Sum_probs=93.1

Q ss_pred             cCCCceeecCCccccCccc---hhhhcccCCCcEEeCCCCccccch----hhccccCCCCccEEEcCCCccCcc--hhhh
Q 001036          258 LSSLTSLHLSHNILQGSID---AKEFDSLSNLEELDINDNEIDNVE----VSRGYRGLRKLKSLDLSGVGIRDG--NKLL  328 (1180)
Q Consensus       258 l~~L~~L~L~~~~~~~~~~---~~~l~~l~~L~~L~L~~n~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~~--~~~~  328 (1180)
                      .+.|+.+.++++.+.....   ...+...+.|++|+++.|.++...    +...+..+++|++|++++|.+.+.  ..+.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            3456666666555432111   123455677888888888776533    234577888999999999876542  3455


Q ss_pred             hhcCCCCCCceecccCCcccccc--cchhhhc--CCCCccEEEcCCCCCchhhHhhHhh----hCCCCCEEEcCCCcccc
Q 001036          329 QSMGSFPSLNTLHLESNNFTATL--TTTQELH--NFTNLEYLTLDDSSLHISLLQSIGS----IFPSLKNLSMSGCEVNG  400 (1180)
Q Consensus       329 ~~l~~l~~L~~L~L~~~~~~~~~--~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~  400 (1180)
                      ..+..+++|++|++++|.+....  .....+.  ..+.|++|++++|.+.......+..    ..+.|+.|++++|.+..
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            66778899999999999875432  1122233  3467899999999887655444332    26788888888887643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.2e-11  Score=116.24  Aligned_cols=113  Identities=16%  Similarity=0.180  Sum_probs=95.1

Q ss_pred             ccceEEccCCcccCCCCccccCCCCCCEEeCccc-cccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEc
Q 001036          984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN-NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 1062 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~l 1062 (1180)
                      ....++.+++.+. .+|..+..+++|+.|++++| .|+...+..|.++++|+.|+|++|+|+...|.+|..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3466889999988 67888999999999999876 588777888999999999999999999888899999999999999


Q ss_pred             CCCcCcccCCCcccccccCCccccCCCCCCCCCCCC
Q 001036         1063 AYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 1098 (1180)
Q Consensus      1063 s~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l~ 1098 (1180)
                      ++|+|+...+. .-+...+....+.|||+-|+|.+.
T Consensus        88 s~N~l~~l~~~-~~~~~~l~~L~L~~Np~~C~C~~~  122 (156)
T d2ifga3          88 SFNALESLSWK-TVQGLSLQELVLSGNPLHCSCALR  122 (156)
T ss_dssp             CSSCCSCCCST-TTCSCCCCEEECCSSCCCCCGGGH
T ss_pred             cCCCCcccChh-hhccccccccccCCCcccCCchHH
Confidence            99999954444 333446778889999999998654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=8.4e-13  Score=132.21  Aligned_cols=144  Identities=22%  Similarity=0.280  Sum_probs=103.9

Q ss_pred             CCcEEECcCc--cCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccC
Q 001036          859 SLVTLDLSYN--YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN  936 (1180)
Q Consensus       859 ~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~  936 (1180)
                      ..+.++++++  .++ .+|..+..+++|++|+|++|+|+. ++ .+..+++|++|+|++|+++.. |..+.         
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~---------   90 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDA---------   90 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSC-SSHHH---------
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccccc-ccccc---------
Confidence            3445555543  233 456778888999999999999874 44 478888999999999988642 22111         


Q ss_pred             CCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcc
Q 001036          937 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 1016 (1180)
Q Consensus       937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~ 1016 (1180)
                                                                  .++.|+.|++++|+++. ++ .+.++++|+.|++++
T Consensus        91 --------------------------------------------~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~  124 (198)
T d1m9la_          91 --------------------------------------------VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSN  124 (198)
T ss_dssp             --------------------------------------------HHHHCCEEECSEEECCC-HH-HHHHHHHSSEEEESE
T ss_pred             --------------------------------------------ccccccccccccccccc-cc-ccccccccccccccc
Confidence                                                        12368889999999884 33 478888999999999


Q ss_pred             cccccccc-ccccCCCCCCEEECcCCcCcccCCcc----------ccCCCCCCEEE
Q 001036         1017 NNLTGTIP-LTFSNLRHIESLDLSYNKLSGKIPRQ----------LVDLNTLAIFI 1061 (1180)
Q Consensus      1017 N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~ip~~----------l~~l~~L~~l~ 1061 (1180)
                      |+++.... ..++.+++|+.|+|++|+++...+..          +..+++|+.||
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             chhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            99985432 46888999999999999887655543          45677787776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=8.2e-11  Score=112.21  Aligned_cols=62  Identities=18%  Similarity=0.179  Sum_probs=27.5

Q ss_pred             cEEECcCccCccccchhhhcCCCCCEEecCCCc-cccCCCccccCCCCCCEEECcCCcCcccCC
Q 001036          861 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN-LEGEVPIQLCRLNQLQLLDLSDNNLHGLIP  923 (1180)
Q Consensus       861 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  923 (1180)
                      +.++.+++.+. ..|..+.++++|++|++++|+ ++...+.+|.++++|+.|+|++|+|++..|
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~   73 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP   73 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc
Confidence            34455544444 234444444455555554332 443333444444444444444444443333

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.04  E-value=3.6e-12  Score=127.49  Aligned_cols=132  Identities=23%  Similarity=0.244  Sum_probs=105.7

Q ss_pred             cccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccc
Q 001036          853 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH  932 (1180)
Q Consensus       853 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  932 (1180)
                      .+..+++|+.|+|++|+|+. ++ .+.++++|++|++++|+++ .+|..+..+++|+.|++++|+++.. + .+.     
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l-~-~~~-----  112 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIE-----  112 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH-H-HHH-----
T ss_pred             HHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc-c-ccc-----
Confidence            68889999999999999985 44 5899999999999999998 5676666677899999999998753 1 111     


Q ss_pred             cccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCC-ccccCCCCCCE
Q 001036          933 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP-PQIGNLTRIQT 1011 (1180)
Q Consensus       933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p-~~~~~l~~L~~ 1011 (1180)
                                                                      .+++|+.||+++|+++.... ..+..+++|+.
T Consensus       113 ------------------------------------------------~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~  144 (198)
T d1m9la_         113 ------------------------------------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLED  144 (198)
T ss_dssp             ------------------------------------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred             ------------------------------------------------ccccccccccccchhccccccccccCCCccce
Confidence                                                            24589999999999985322 46899999999


Q ss_pred             EeCcccccccccccc----------ccCCCCCCEEECcCCcCc
Q 001036         1012 LNLSHNNLTGTIPLT----------FSNLRHIESLDLSYNKLS 1044 (1180)
Q Consensus      1012 L~Ls~N~l~g~~p~~----------~~~l~~L~~L~Ls~N~l~ 1044 (1180)
                      |+|++|.++...+..          +..+++|+.||  +..++
T Consensus       145 L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             eecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            999999998766543          56789999987  44444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.7e-07  Score=89.47  Aligned_cols=78  Identities=27%  Similarity=0.194  Sum_probs=44.7

Q ss_pred             ccceEEccCCcccCCC--CccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCcc-------ccCC
Q 001036          984 LLAGLDLSCNKLVGHI--PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ-------LVDL 1054 (1180)
Q Consensus       984 ~L~~LdLs~N~l~g~~--p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~-------l~~l 1054 (1180)
                      .|++||||+|+|+..-  +..+..+++|+.||||+|+++...+-.+.....|+.|++++|.+++.....       +..+
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~  145 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF  145 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHC
Confidence            4555555555555321  233455666777777777766443334444456777777777776554422       4556


Q ss_pred             CCCCEEE
Q 001036         1055 NTLAIFI 1061 (1180)
Q Consensus      1055 ~~L~~l~ 1061 (1180)
                      ++|++||
T Consensus       146 P~L~~LD  152 (162)
T d1koha1         146 PKLLRLD  152 (162)
T ss_dssp             TTCCEET
T ss_pred             CCCCEEC
Confidence            7777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.4e-06  Score=82.82  Aligned_cols=75  Identities=21%  Similarity=0.185  Sum_probs=59.5

Q ss_pred             CCccccCCCCCCEEeCccccccccc--cccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036          999 IPPQIGNLTRIQTLNLSHNNLTGTI--PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus       999 ~p~~~~~l~~L~~L~Ls~N~l~g~~--p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
                      ++..+.+++.|++||||+|+|+..-  +..+..+++|+.|||++|+++...+-.+.....|+.+++++|++++....
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCccc
Confidence            3444556789999999999999653  45678899999999999999965443555566799999999999876553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=3.5e-05  Score=73.23  Aligned_cols=44  Identities=9%  Similarity=0.180  Sum_probs=22.3

Q ss_pred             CCCccEEeCCCC-cCCCcccccccccccCCCCccEEEcCCCcCCc
Q 001036          206 FNNLEVLDMSGN-EIDNLVVPQGLERLSRLSKLKKLDLRGNLCNN  249 (1180)
Q Consensus       206 l~~L~~L~Ls~~-~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~  249 (1180)
                      .++|++|+|+++ .+...........+...+.|++|++++|.+.+
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~   58 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD   58 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccch
Confidence            456666666653 23333223333445555566666666655543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.40  E-value=0.00011  Score=69.80  Aligned_cols=94  Identities=14%  Similarity=0.236  Sum_probs=57.4

Q ss_pred             cCCCCCCeEEccCC-CCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCCC
Q 001036          157 DSLRDLEELDIGGN-KIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS  235 (1180)
Q Consensus       157 ~~L~~L~~L~L~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~  235 (1180)
                      .+.++|++|+|+++ .+.......                   -...+...++|++|++++|.+.........+.+...+
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~-------------------l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~   72 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRS-------------------LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP   72 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHH-------------------HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHH-------------------HHHHHhhCCccceeeccccccchhHHHHHhhhhhhcc
Confidence            45677888888764 343322110                   1234566778999999999887655555455567778


Q ss_pred             CccEEEcCCCcCCchhhHHh----hccCCCceeecCCc
Q 001036          236 KLKKLDLRGNLCNNSILSSV----ARLSSLTSLHLSHN  269 (1180)
Q Consensus       236 ~L~~L~L~~~~~~~~~~~~l----~~l~~L~~L~L~~~  269 (1180)
                      .|++|++++|.+.......+    ...+.|++|+++++
T Consensus        73 ~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          73 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            88888888887766543333    23344555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.14  E-value=0.00039  Score=65.71  Aligned_cols=46  Identities=20%  Similarity=0.241  Sum_probs=23.7

Q ss_pred             CCCCccEEeCCC-CcCCCcccccccccccCCCCccEEEcCCCcCCch
Q 001036          205 SFNNLEVLDMSG-NEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS  250 (1180)
Q Consensus       205 ~l~~L~~L~Ls~-~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~  250 (1180)
                      +.+.|++|++++ +.++..........+...++|++|++++|.++..
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~   61 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP   61 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHH
Confidence            345666666665 2344333333334455556666666666655443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.83  E-value=0.00063  Score=64.24  Aligned_cols=78  Identities=18%  Similarity=0.197  Sum_probs=52.1

Q ss_pred             ccCCCCCCeEEccCC-CCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCC
Q 001036          156 LDSLRDLEELDIGGN-KIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL  234 (1180)
Q Consensus       156 l~~L~~L~~L~L~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l  234 (1180)
                      ..+.++|++|+++++ .++......                   -...+...++|++|++++|.+.........+.+...
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~-------------------l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~   73 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKA-------------------CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN   73 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHH-------------------HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHH-------------------HHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhc
Confidence            345677778877763 343332211                   123456778899999999988776655555667778


Q ss_pred             CCccEEEcCCCcCCchhh
Q 001036          235 SKLKKLDLRGNLCNNSIL  252 (1180)
Q Consensus       235 ~~L~~L~L~~~~~~~~~~  252 (1180)
                      +.++.+++++|.+.....
T Consensus        74 ~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          74 NTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             SSCCEEECCSSCCCHHHH
T ss_pred             ccchhhhhccccccchhH
Confidence            888888888887765543