Citrus Sinensis ID: 001040

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------118
MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWVSTCL
ccccccccccccccHHHHHcccccccccccccccccccccccccHHcccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEcccccccccEEEcccccEEEEcccEEEEEEcccccccEEEEEEEEEEcccEEEEEEccccccccccccccccccEEEccccccEEcccccccccccccccEEEEEEEccccEEEEEEccccccccccccccccccccEEEEEEcccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccHHHHHHHHHHcccHHHHHccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccHHHcccHHHHccccccccc
cccccccccccccccEEEEcccccccccccEEEEEcccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHccEEEEcccEEEcccccHHHHHHccccccEEEccccccccEEEEccccEEccEEEEHEEEEEEEEEccEEEEEEEEEcccEEEEEEEccccccccccccccccccEEEccccEEEEcccccccccccccccEEEEEEEccccEEEEEEcccccHHHHHHHHHccccccEEEEEEEcccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccEcccccccccHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcEEEEccccHHHHHHHcccEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHcccccEEEEcccccEccccEEEcccccHccHHHHccHHHHHHHHccccHHHHHEEEHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccEEEEcHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHEEccHHEEEEEccccccc
maedglrigglsSGLALIlngddgkdnssksrfvsycddfghqSVEQTLEYIfglpnkslgpltcpvdnnlIRSIIKNdfskcylnsdavvanrdgigilengsgphivgleessicgdvriaKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSgvqqlgwatlscpftdhkgvgdaddsyafdgrrvkkwnkeaepygqswvaGDIIGCcidldsdeisfyrNGVSLGVAFSgirkmgpgfgyypavslsqgercvlnfgarpfkypincylplqesppvnVFATQLLQCLSRLLgmdkaersSVEKSRRLKRFVSLEKifnpvshgICEEFFSLLEADARIIEYVGWGILLSFMMEVFglqvphdysslDRVVDVFLQFQGSRSIFEHIIQALSCGCKtasmvltecpysgsypylaLACHILRREELMVLWWNSLDFEFIFEGflsrknpnrqdlqcmipsvwwpgscedisyessMMLTTTALSEAVSKIEEKHRELCLLVIQfippisppqfpgsvFRTFIQNILLknrgadrslpppgvssnsVLVSLYTVILHFLSEgfaigdtcswlkrsekngcnvgflhrggqqsfpiglflkndLLRADISRLggsfshllkshpvddqdaEVIRweegymddeetrvchlsehkpcccssydaefvrslkypvrnatkgsrghcssvpersahvaaecstgslndeiadkpstsdqsesdfgyhpvrHTMTVLRESNMSAATLKEEELLDALLLLYHIglapnfkqasyymshqsqSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVlrksdppfvpstifIKQGLASFVTFVVThfndprissaDLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALIsafdnrswipvTNILLRLCkghgfgsskhgessssSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCtheipqaflsgtdTNLRRLTELIVFILNHvtsaadaefFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLdasaesecgvqndvvgvfssmdcpdtihcgFQYLLEYNWVSTCL
MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWnkeaepygqswvAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGmdkaerssveksrrlkrfvslekifnpvshGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSfshllkshpvddqdaEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGfgsskhgesssSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIpqaflsgtdtNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWVSTCL
MAEDglrigglssglalilngDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLViqfippisppqfpGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTVLRESNMSaatlkeeelldallllYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCkghgfgsskhgesssssVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWVSTCL
*************GLALIL************RFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGM*************LKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNR*************NSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVR*******************************************************MTVL********TLKEEELLDALLLLYHIGLAPNFKQASYYMS********************************NNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGF************VIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWVSTC*
***********SSGLALIL*****************CDDFGHQSVEQTLEYIFG******************RSIIKNDFSKCYLNSDAVVANRD*******GSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLL***************LKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCED*******MLTTTALSEAVSKIEEKHRELCLLVIQFIP**********VFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDD*******************************SSYDAEFVRS**************************************************************************LKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISL*************************NYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAA**********LP*ALISAFDNRSWIPVTNILLRLCKGHGFG**************QRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEK*QVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLL*************VVGVFSSMDCPDTIHCGFQYLLEYNWVSTCL
MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMD**********RRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRN**********************CSTGSLNDEIAD**********DFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHG*************VIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWVSTCL
*******IGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYP***********************************************DFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWVSTCL
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MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSLGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRxxxxxxxxxxxxxxxxxxxxxVIDCVRHCAWYRISLFSRWKQRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWVSTCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1178 2.2.26 [Sep-21-2011]
Q9SIZ8 1280 E3 ubiquitin-protein liga yes no 0.988 0.910 0.717 0.0
Q5XPI4 1314 E3 ubiquitin-protein liga yes no 0.819 0.734 0.258 3e-82
D3ZXK7 1318 E3 ubiquitin-protein liga yes no 0.821 0.734 0.253 5e-80
Q5XPI3 1314 E3 ubiquitin-protein liga yes no 0.819 0.734 0.257 6e-80
Q8BVR6576 RING finger and SPRY doma no no 0.115 0.236 0.415 1e-21
Q5R881576 RING finger and SPRY doma no no 0.115 0.236 0.408 2e-21
Q96DX4576 RING finger and SPRY doma no no 0.115 0.236 0.408 3e-21
Q95LP3576 RING finger and SPRY doma N/A no 0.115 0.236 0.408 4e-21
E9PZQ0 5035 Ryanodine receptor 1 OS=M no no 0.106 0.025 0.328 1e-13
P21817 5038 Ryanodine receptor 1 OS=H no no 0.118 0.027 0.303 2e-13
>sp|Q9SIZ8|RKP_ARATH E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana GN=RKP PE=2 SV=2 Back     alignment and function desciption
 Score = 1751 bits (4536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 842/1173 (71%), Positives = 994/1173 (84%), Gaps = 8/1173 (0%)

Query: 1    MAEDGLRIGGLSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKSL 60
            MAED LR+G +SSGLA++LNG+D K+NSSK+R V + D  GH+ +E+T+E+IFGL  KS+
Sbjct: 1    MAEDSLRVGMISSGLAVLLNGEDAKENSSKARIVPHFDYSGHRPLERTIEFIFGLAEKSV 60

Query: 61   GPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGDV 120
            GPL   VD++LIR++IKN FSK + + D  V+ R+GI ++ +G GP IVGLEE SICGD+
Sbjct: 61   GPLDGQVDSSLIRAVIKNQFSKLHGDLDVSVSQREGISVVHHGVGPPIVGLEEFSICGDI 120

Query: 121  RIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGD 180
            RI K PL++ESLA+FSSARAN C+WKGKWMYEV LETSG+QQLGWATL+CPFTD KGVGD
Sbjct: 121  RIVKPPLVLESLALFSSARANACIWKGKWMYEVALETSGIQQLGWATLACPFTDQKGVGD 180

Query: 181  ADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIR 240
            ADDSYAFDGRRV KWNKEAEPYGQSWVAGD+IGCCIDL+ DEI FYRNGVSLG AF+GIR
Sbjct: 181  ADDSYAFDGRRVSKWNKEAEPYGQSWVAGDVIGCCIDLNCDEIYFYRNGVSLGAAFTGIR 240

Query: 241  KMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLL 300
            K+GPGFGYYPA+SLSQGERC LNFGA PFKYP++ + PLQE+P    FAT+LL+C SRLL
Sbjct: 241  KLGPGFGYYPAISLSQGERCELNFGAYPFKYPVDGFQPLQEAPTRFSFATELLRCFSRLL 300

Query: 301  GMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGILLSFM 360
              D+ +RS  +   RL+RF S+E++F PVS  IC+EFF +LE D  + EY+G G  LSF+
Sbjct: 301  --DRPDRSLADTLSRLRRFASVEELFCPVSSAICDEFFYILEQDPLLAEYLGRGAFLSFL 358

Query: 361  MEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSYP 420
            +E F  Q PHD SSLD+V+DVFL+F  S  IFEH++ AL+CGCKTA+++LTECPYSG YP
Sbjct: 359  LETFRTQAPHDSSSLDKVLDVFLEFPQSHLIFEHVVNALACGCKTATLILTECPYSGPYP 418

Query: 421  YLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISY 480
            YLALACH+ +REELMV WW SL FEF+FEGFLS ++ N+ DLQ ++P VWWPGS EDISY
Sbjct: 419  YLALACHLFKREELMVQWWRSLHFEFLFEGFLSCRSSNKHDLQHLMPVVWWPGSSEDISY 478

Query: 481  ESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGA 540
            ESSM  T +ALSEA++KIEEK R LCLLVIQFIPP+SPPQ PGS FR F+QN+LLKNRGA
Sbjct: 479  ESSMGFTISALSEAINKIEEKQRNLCLLVIQFIPPVSPPQLPGSAFRGFLQNLLLKNRGA 538

Query: 541  DRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGGQQSF 600
            DR+L P GV+ NSVLVSL++VILHFLSEGFA+      LK SE    NVGFLHRGGQQ F
Sbjct: 539  DRTLAPSGVTRNSVLVSLFSVILHFLSEGFAM------LKSSEAVHHNVGFLHRGGQQKF 592

Query: 601  PIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHLSEHK 660
            P+ LFLKND  RADI+RLGG FSH+ KS+P DDQ+ E++RWEEG MDDE+ RV H +E K
Sbjct: 593  PLSLFLKNDPHRADITRLGGLFSHISKSYPTDDQEEEIMRWEEGCMDDEQNRVTHATEQK 652

Query: 661  PCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTS 720
            PCCC +YD +  +SLK   +N  + SRG CSS+PERS+HVAAECS GS ++EI DKPSTS
Sbjct: 653  PCCCLAYDTDLTKSLKDRGKNTAQSSRGRCSSIPERSSHVAAECSAGSFSEEIDDKPSTS 712

Query: 721  DQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQ 780
            +QS+ DFGY PVR   T L+ES +S+A L EEELLDALLLLYHI +APNFKQASYYMSHQ
Sbjct: 713  NQSDPDFGYRPVRFMRTALQESRISSAILSEEELLDALLLLYHIAVAPNFKQASYYMSHQ 772

Query: 781  SQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWKQRGM 840
            SQSISLLEETDKQIRERA  +Q+KRLKEARNNY+E+V+DCVRH AW+RISLFSRWKQRGM
Sbjct: 773  SQSISLLEETDKQIRERASCDQIKRLKEARNNYKEDVMDCVRHSAWFRISLFSRWKQRGM 832

Query: 841  YATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQGLASF 900
            YA C+WVVQLLLVLSK+DSVF+YIPEFYLE+LVDCFHVLRKSDPPFVPST FIKQGL+SF
Sbjct: 833  YALCMWVVQLLLVLSKMDSVFVYIPEFYLESLVDCFHVLRKSDPPFVPSTTFIKQGLSSF 892

Query: 901  VTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISAFDNR 960
            +TFVVTHFND RIS+ DL+DLLLQSISVLVQYK+YL AFE+NEAAT  +P AL++AFDNR
Sbjct: 893  ITFVVTHFNDSRISNTDLKDLLLQSISVLVQYKEYLEAFENNEAATRHMPAALLAAFDNR 952

Query: 961  SWIPVTNILLRLCKGHGFGSSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLS 1020
            SWIPVTNI LRLCKG GF S K+GESS SS +FQ LLR+ACIND  L STFLNRLFNTLS
Sbjct: 953  SWIPVTNIFLRLCKGSGFSSLKNGESSFSSTVFQALLRDACINDGELLSTFLNRLFNTLS 1012

Query: 1021 WTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNL 1080
            WT+TEFS+S+REMQEKYQV EFQQ+KCCVIF+LS NL RVLEFCT+ +PQAFL+GTDTNL
Sbjct: 1013 WTITEFSVSVREMQEKYQVMEFQQRKCCVIFELSSNLARVLEFCTYAMPQAFLAGTDTNL 1072

Query: 1081 RRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLDASAES 1140
            RRLTELI+FILNH+TSA D EFFDLSLRR GQ  EKV+RG++LAPLVGIILNLL+AS +S
Sbjct: 1073 RRLTELILFILNHMTSAVDDEFFDLSLRRQGQPSEKVSRGILLAPLVGIILNLLEASEDS 1132

Query: 1141 ECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNW 1173
            +   Q+DV+G+F+SMDCPDT++ GFQYLLEYNW
Sbjct: 1133 KPKQQHDVIGLFASMDCPDTVYYGFQYLLEYNW 1165
E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of KRP1 and KRP2.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens GN=RNF123 PE=1 SV=1 Back     alignment and function description
>sp|D3ZXK7|RN123_RAT E3 ubiquitin-protein ligase RNF123 OS=Rattus norvegicus GN=Rnf123 PE=1 SV=1 Back     alignment and function description
>sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus musculus GN=Rnf123 PE=2 SV=1 Back     alignment and function description
>sp|Q8BVR6|RSPRY_MOUSE RING finger and SPRY domain-containing protein 1 OS=Mus musculus GN=Rspry1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R881|RSPRY_PONAB RING finger and SPRY domain-containing protein 1 OS=Pongo abelii GN=RSPRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q96DX4|RSPRY_HUMAN RING finger and SPRY domain-containing protein 1 OS=Homo sapiens GN=RSPRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q95LP3|RSPRY_MACFA RING finger and SPRY domain-containing protein 1 OS=Macaca fascicularis GN=RSPRY1 PE=2 SV=1 Back     alignment and function description
>sp|E9PZQ0|RYR1_MOUSE Ryanodine receptor 1 OS=Mus musculus GN=Ryr1 PE=1 SV=1 Back     alignment and function description
>sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1178
255575543 1348 protein binding protein, putative [Ricin 0.998 0.872 0.786 0.0
3594807151276 PREDICTED: E3 ubiquitin-protein ligase R 0.997 0.920 0.781 0.0
3565162831269 PREDICTED: E3 ubiquitin-protein ligase R 0.993 0.921 0.760 0.0
2960824941259 unnamed protein product [Vitis vinifera] 0.983 0.919 0.772 0.0
3565090461269 PREDICTED: E3 ubiquitin-protein ligase R 0.993 0.921 0.763 0.0
357464385 1301 RING finger and SPRY domain-containing p 0.991 0.897 0.715 0.0
30681590 1280 ubiquitination-promoting complex protein 0.988 0.910 0.717 0.0
334184361 1283 ubiquitination-promoting complex protein 0.988 0.908 0.715 0.0
4494484061270 PREDICTED: E3 ubiquitin-protein ligase R 0.993 0.921 0.727 0.0
2978250611276 zinc finger family protein [Arabidopsis 0.988 0.912 0.713 0.0
>gi|255575543|ref|XP_002528672.1| protein binding protein, putative [Ricinus communis] gi|223531895|gb|EEF33711.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1901 bits (4924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 929/1181 (78%), Positives = 1034/1181 (87%), Gaps = 5/1181 (0%)

Query: 1    MAEDGLRIGG-LSSGLALILNGDDGKDNSSKSRFVSYCDDFGHQSVEQTLEYIFGLPNKS 59
            MA+DG+R+GG +S+GLA+ILNG+DGK++SSK+R VSYCDDFG+Q VE+ LEY+FGLPNK 
Sbjct: 1    MADDGIRVGGGISAGLAVILNGEDGKESSSKTRLVSYCDDFGNQPVERALEYVFGLPNKL 60

Query: 60   LGPLTCPVDNNLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSICGD 119
            L PLT  VDNNL+RSIIKN+F K ++ SD + ++RDGI I +NG  PH VGLEE SICGD
Sbjct: 61   LSPLTASVDNNLVRSIIKNEFQKVHVKSDTLGSDRDGICIFDNGCRPHKVGLEELSICGD 120

Query: 120  VRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVG 179
            +RI K P ++ESLAMFSS RANVCVW+GKWMYEV L TSGVQQLGWAT+SCPFTDHKGVG
Sbjct: 121  IRIIKPPFVLESLAMFSSTRANVCVWEGKWMYEVILATSGVQQLGWATVSCPFTDHKGVG 180

Query: 180  DADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGI 239
            DADDSYAFDG+RV+KWNK+AEPYGQSWV GD+IGCCIDLD D+I FYRNGVSLGVAF GI
Sbjct: 181  DADDSYAFDGKRVRKWNKDAEPYGQSWVVGDVIGCCIDLDQDKILFYRNGVSLGVAFCGI 240

Query: 240  RKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRL 299
            RKMGPGFGY+PA+SLSQGERC LNFG RPFKYPI  +LPLQE P VN+ AT+LL+ LSRL
Sbjct: 241  RKMGPGFGYHPAISLSQGERCELNFGGRPFKYPIQGFLPLQEPPAVNLLATELLRALSRL 300

Query: 300  ---LGMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGICEEFFSLLEADARIIEYVGWGIL 356
                 M++A+ S V K RRLKRFVSLE++F PV  GICEE F LLE+DA   EYV WG L
Sbjct: 301  SEMYCMERADSSIVGKFRRLKRFVSLEELFYPVCRGICEELFFLLESDAGRTEYVAWGPL 360

Query: 357  LSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYS 416
            LSFMME+F +Q PH YSSLDR +D+ L+FQ S  +FE +I ALSCGCKT S+VLTECPYS
Sbjct: 361  LSFMMEIFRVQPPHGYSSLDRFIDILLEFQESHLMFECVINALSCGCKTTSLVLTECPYS 420

Query: 417  GSYPYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCE 476
            GSY YLALAC+ILRREELM LWW   DFEF+FEGFLS+K+ N+QDL C++PSVWWPGSCE
Sbjct: 421  GSYTYLALACYILRREELMGLWWKLPDFEFLFEGFLSQKSLNKQDLHCLMPSVWWPGSCE 480

Query: 477  DISYESSMMLTTTALSEAVSKIEEKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLK 536
            DISYESSM+LTTTALSEAVSKIEEKHR+LCLLVIQF+PP +PPQ PGSVFRTF+QN+LLK
Sbjct: 481  DISYESSMLLTTTALSEAVSKIEEKHRDLCLLVIQFVPPTTPPQLPGSVFRTFLQNLLLK 540

Query: 537  NRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWLKRSEKNGCNVGFLHRGG 596
             RGADR++PPPGVSSNSVLVSLYTVILHFLSEGFA+ D C WLK  E N  +VGFLHRGG
Sbjct: 541  KRGADRNVPPPGVSSNSVLVSLYTVILHFLSEGFAMRDICGWLKSCETNNYDVGFLHRGG 600

Query: 597  QQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVCHL 656
            +QSFP+ LFLKND  R DISRLGGSFSHL KSHPV DQ+ E +RWEEG MDDEE RV H 
Sbjct: 601  EQSFPVDLFLKNDSYRTDISRLGGSFSHLSKSHPVYDQEVEAVRWEEGCMDDEEIRVTHK 660

Query: 657  SEHKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADK 716
            +  KPCCCSSYD E  +  K+  R  +KGSR HC+ +PERS HVAAECS GSLNDEIADK
Sbjct: 661  TIQKPCCCSSYDVELSKMSKHQTRYISKGSRVHCTPIPERSTHVAAECSAGSLNDEIADK 720

Query: 717  PSTSDQSESDFGYHPVRHTMTVLRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYY 776
            PSTSDQSES+FGYHP+R    V RESNMS+ TL+EEELLD LLLLYHIG+APNFKQASYY
Sbjct: 721  PSTSDQSESEFGYHPMRDMRIVPRESNMSSDTLREEELLDTLLLLYHIGVAPNFKQASYY 780

Query: 777  MSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYRISLFSRWK 836
            MSHQSQSISLL+ETDKQIRER CSEQL+RLKE RN+YREEVIDCVRHCAWYRISLFSRWK
Sbjct: 781  MSHQSQSISLLDETDKQIRERGCSEQLRRLKEVRNDYREEVIDCVRHCAWYRISLFSRWK 840

Query: 837  QRGMYATCVWVVQLLLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQG 896
            QRGMYATC+W+VQL+LVLSKVDS+FIYIPEFYLE LVDCFHVLRKSDPPFVP  IFIKQG
Sbjct: 841  QRGMYATCMWIVQLVLVLSKVDSLFIYIPEFYLETLVDCFHVLRKSDPPFVPPAIFIKQG 900

Query: 897  LASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKDYLAAFESNEAATLRLPKALISA 956
            LASFVTFVV+HFNDPRI SADLRDLLLQSISVLVQYK+YLAAFESNEAA  R+PKAL+SA
Sbjct: 901  LASFVTFVVSHFNDPRILSADLRDLLLQSISVLVQYKEYLAAFESNEAAIQRMPKALLSA 960

Query: 957  FDNRSWIPVTNILLRLCKGHGFG-SSKHGESSSSSVIFQRLLREACINDEGLFSTFLNRL 1015
            FDNRSWIPVTNILLRLCKG  FG S     SSSSSV+FQ LLREACIND  LFS FLNRL
Sbjct: 961  FDNRSWIPVTNILLRLCKGSRFGSSKHGESSSSSSVVFQNLLREACINDGELFSAFLNRL 1020

Query: 1016 FNTLSWTMTEFSISIREMQEKYQVSEFQQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSG 1075
            FNTLSWTMTEFS+SIREMQEKYQV EFQQ+KCCVIFDLSCNL R+LEFCT EIPQAFLSG
Sbjct: 1021 FNTLSWTMTEFSVSIREMQEKYQVLEFQQRKCCVIFDLSCNLARLLEFCTREIPQAFLSG 1080

Query: 1076 TDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGIILNLLD 1135
             DTNLRRLTELIVFIL+H+TSAAD+EFFDLSLRRHGQSLEKVNRGMILAPLVG+ILNLLD
Sbjct: 1081 ADTNLRRLTELIVFILSHITSAADSEFFDLSLRRHGQSLEKVNRGMILAPLVGVILNLLD 1140

Query: 1136 ASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWVST 1176
            AS E ECG QNDVVGVF+SMDCPDT+HCGFQYLLEYNWV +
Sbjct: 1141 ASVEMECGEQNDVVGVFASMDCPDTMHCGFQYLLEYNWVRS 1181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359480715|ref|XP_002276278.2| PREDICTED: E3 ubiquitin-protein ligase RKP-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356516283|ref|XP_003526825.1| PREDICTED: E3 ubiquitin-protein ligase RKP-like [Glycine max] Back     alignment and taxonomy information
>gi|296082494|emb|CBI21499.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356509046|ref|XP_003523263.1| PREDICTED: E3 ubiquitin-protein ligase RKP-like [Glycine max] Back     alignment and taxonomy information
>gi|357464385|ref|XP_003602474.1| RING finger and SPRY domain-containing protein [Medicago truncatula] gi|355491522|gb|AES72725.1| RING finger and SPRY domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|30681590|ref|NP_850020.1| ubiquitination-promoting complex protein 1 [Arabidopsis thaliana] gi|300681232|sp|Q9SIZ8.2|RKP_ARATH RecName: Full=E3 ubiquitin-protein ligase RKP; Short=AtKPC1; AltName: Full=Protein RELATED TO KPC1 gi|330252157|gb|AEC07251.1| ubiquitination-promoting complex protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334184361|ref|NP_001189573.1| ubiquitination-promoting complex protein 1 [Arabidopsis thaliana] gi|330252158|gb|AEC07252.1| ubiquitination-promoting complex protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449448406|ref|XP_004141957.1| PREDICTED: E3 ubiquitin-protein ligase RKP-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297825061|ref|XP_002880413.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297326252|gb|EFH56672.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1178
UNIPROTKB|E1C5W8 1309 RNF123 "Uncharacterized protei 0.311 0.280 0.351 1.3e-73
UNIPROTKB|Q5XPI4 1314 RNF123 "E3 ubiquitin-protein l 0.326 0.292 0.337 6.1e-73
UNIPROTKB|E2R3P7 1314 RNF123 "Uncharacterized protei 0.308 0.277 0.347 3.3e-72
UNIPROTKB|F1LMI7 1312 Rnf123 "E3 ubiquitin-protein l 0.317 0.285 0.326 7.4e-72
RGD|2301394 1318 Rnf123 "ring finger protein 12 0.317 0.283 0.326 7.7e-72
UNIPROTKB|E1BL26 1313 RNF123 "Uncharacterized protei 0.310 0.278 0.337 1.4e-71
MGI|MGI:2148796 1314 Rnf123 "ring finger protein 12 0.311 0.279 0.332 5.7e-71
UNIPROTKB|F1SPR6 1314 RNF123 "Uncharacterized protei 0.312 0.280 0.333 1.4e-70
FB|FBgn0038296 1332 CG6752 [Drosophila melanogaste 0.248 0.219 0.332 3.5e-54
ZFIN|ZDB-GENE-050208-529789 rnf123 "ring finger protein 12 0.118 0.177 0.365 8.6e-25
UNIPROTKB|E1C5W8 RNF123 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 521 (188.5 bits), Expect = 1.3e-73, Sum P(4) = 1.3e-73
 Identities = 135/384 (35%), Positives = 198/384 (51%)

Query:    99 ILENGSGPHIVGLEESSICGDVRIAKLPLL-VESLAMFSSARANVCVWKGKWMYEVTLET 157
             + E   GP  V L+ +S    + +    LL V   + F S RA  CV+KGKW+YEV + +
Sbjct:    86 LTEGRLGPSTVVLDHTSGFEGLLLVDDDLLGVIGHSNFGSIRATTCVYKGKWIYEVLISS 145

Query:   158 SGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCID 217
              G+ Q+GW TL+C F   +GVGD  DSYA+DG RV+KWN     YG+SW AGDI+ C ID
Sbjct:   146 QGLMQIGWCTLNCRFNQEEGVGDTPDSYAYDGNRVRKWNVTTTNYGKSWAAGDIVSCLID 205

Query:   218 LDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYP-INCY 276
             L+   I+F  NG+SLG AF  I + G G  Y+PA+SLS  E    NFG+RP +YP +  Y
Sbjct:   206 LEEGTIAFCLNGISLGTAFDNITR-GAGMAYFPAISLSFKESVAFNFGSRPLRYPLVEGY 264

Query:   277 LPLQESPPVN-VFATQLLQCLSRLL--GMDKAERSSVEKSRRLKRFVSLEKIFNPVSHGI 333
              PLQ+ P  + V A +LL  L  ++  G+D  E   VEK   + +      +   ++H  
Sbjct:   265 RPLQDPPVADLVKARKLLGFLKNVIHIGIDVTEGKLVEKDASMWQLQGEPTVLITLAHIF 324

Query:   334 CEEFFSLLEADARIIEYVGWGILLSFMMEVFGLQVPHDYSSLDRVVDVFLQFQGSRSIFE 393
                +FS L     ++E V    LLS ++E  G    H    + +++D+         + E
Sbjct:   325 --NYFSPLMCKVYLVEDVLMTFLLS-ILERGGAVDAHPL--IQQLLDLMWLLMEEYEVHE 379

Query:   394 HIIQALSCGCKTASMVLTECPYSG-SYPYLALACHILRREELMVLWWNSLDFEFIFEG-F 451
              + Q L    + A       P  G    YL L   +L+ E+      +++ F+ +    F
Sbjct:   380 CLKQLLMSLLR-AYRFSPIIPDLGLQIHYLRLTIAVLKHEKSRKYLLSNVLFDVLRSVVF 438

Query:   452 LSRKNPNRQD---LQCMIPSVWWP 472
                K+P R +   LQ +IP+ WWP
Sbjct:   439 FYIKSPLRVEEAGLQELIPTTWWP 462
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
UNIPROTKB|Q5XPI4 RNF123 "E3 ubiquitin-protein ligase RNF123" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R3P7 RNF123 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1LMI7 Rnf123 "E3 ubiquitin-protein ligase RNF123" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|2301394 Rnf123 "ring finger protein 123" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BL26 RNF123 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2148796 Rnf123 "ring finger protein 123" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SPR6 RNF123 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0038296 CG6752 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-529 rnf123 "ring finger protein 123" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SIZ8RKP_ARATH6, ., 3, ., 2, ., -0.71780.98890.9101yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1178
cd12882128 cd12882, SPRY_RNF123, SPRY domain at N-terminus of 2e-80
cd11709118 cd11709, SPRY, SPRY domain 1e-36
smart00449122 smart00449, SPRY, Domain in SPla and the RYanodine 2e-33
pfam00622125 pfam00622, SPRY, SPRY domain 6e-32
cd12878133 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryano 2e-28
cd12872149 cd12872, SPRY_Ash2, SPRY domain in Ash2 5e-26
cd12873155 cd12873, SPRY_DDX1, SPRY domain associated with DE 7e-26
cd12883121 cd12883, SPRY_RING, SPRY domain at N-terminus of R 2e-25
cd12884176 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous 3e-22
cd12885132 cd12885, SPRY_RanBP_like, SPRY domain in Ran bindi 9e-17
cd12877151 cd12877, SPRY1_RyR, SPRY domain 1 (SPRY1) of ryano 4e-14
cd12909153 cd12909, SPRY_RanBP9_10, SPRY domain in Ran bindin 2e-13
cd12886128 cd12886, SPRY_like, SPRY domain-like in bacteria 3e-13
cd12876187 cd12876, SPRY_SOCS3, SPRY domain in the suppressor 1e-06
cd12906174 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppre 0.001
pfam10408625 pfam10408, Ufd2P_core, Ubiquitin elongating factor 0.004
>gnl|CDD|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger protein 123 Back     alignment and domain information 
 Score =  258 bits (662), Expect = 2e-80
 Identities = 87/129 (67%), Positives = 100/129 (77%), Gaps = 1/129 (0%)

Query: 137 SARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWN 196
           S RAN CV+KGKWMYEVTL T G+ Q+GWAT+SC FT  +GVGD  DSYA+DG RV+KWN
Sbjct: 1   SIRANACVYKGKWMYEVTLGTKGIMQIGWATISCRFTQEEGVGDTPDSYAYDGNRVRKWN 60

Query: 197 KEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQ 256
              + YG+ WVAGD+IGCCIDLD   ISFYRNG SLGVAF  +R+ GPG  Y+PAVSLS 
Sbjct: 61  VSTQKYGEPWVAGDVIGCCIDLDEGTISFYRNGRSLGVAFDNVRR-GPGLAYFPAVSLSF 119

Query: 257 GERCVLNFG 265
           GE   LNFG
Sbjct: 120 GESVELNFG 128

This SPRY domain is found at the N-terminus of RING finger protein 123 domain (also known as E3 ubiquitin-protein ligase RNF123). The ring finger domain motif is present in a variety of functionally distinct proteins and known to be involved in protein-protein and protein-DNA interactions. RNF123 displays E3 ubiquitin ligase activity toward the cyclin-dependent kinase inhibitor p27 (Kip1). Length = 128
>gnl|CDD|240451 cd11709, SPRY, SPRY domain Back     alignment and domain information
>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor Back     alignment and domain information
>gnl|CDD|216029 pfam00622, SPRY, SPRY domain Back     alignment and domain information
>gnl|CDD|240458 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryanodine receptor (RyR) Back     alignment and domain information
>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2 Back     alignment and domain information
>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1 Back     alignment and domain information
>gnl|CDD|240463 cd12883, SPRY_RING, SPRY domain at N-terminus of Really Interesting New Gene (RING) finger domain Back     alignment and domain information
>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1 Back     alignment and domain information
>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins, SSH4, HECT E3 and SPRYD3 Back     alignment and domain information
>gnl|CDD|240457 cd12877, SPRY1_RyR, SPRY domain 1 (SPRY1) of ryanodine receptor (RyR) Back     alignment and domain information
>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and 10 Back     alignment and domain information
>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria Back     alignment and domain information
>gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine signaling 3 (SOCS3) family Back     alignment and domain information
>gnl|CDD|240486 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppressor of cytokine signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4) Back     alignment and domain information
>gnl|CDD|220735 pfam10408, Ufd2P_core, Ubiquitin elongating factor core Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1178
KOG4692 489 consensus Predicted E3 ubiquitin ligase [Posttrans 100.0
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.96
KOG2626544 consensus Histone H3 (Lys4) methyltransferase comp 99.94
smart00449122 SPRY Domain in SPla and the RYanodine Receptor. Do 99.86
PF00622124 SPRY: SPRY domain; InterPro: IPR003877 The SPRY do 99.86
KOG4030197 consensus Uncharacterized conserved protein, conta 99.7
KOG2243 5019 consensus Ca2+ release channel (ryanodine receptor 99.64
KOG2242558 consensus Scaffold/matrix specific factor hnRNP-U/ 99.62
PF10408629 Ufd2P_core: Ubiquitin elongating factor core; Inte 99.53
KOG3953242 consensus SOCS box protein SSB-1, contains SPRY do 99.39
KOG4367699 consensus Predicted Zn-finger protein [Function un 99.36
KOG2243 5019 consensus Ca2+ release channel (ryanodine receptor 99.22
KOG1477469 consensus SPRY domain-containing proteins [General 98.7
KOG1477469 consensus SPRY domain-containing proteins [General 97.53
KOG2042943 consensus Ubiquitin fusion degradation protein-2 [ 96.92
COG5113929 UFD2 Ubiquitin fusion degradation protein 2 [Postt 94.46
KOG2242558 consensus Scaffold/matrix specific factor hnRNP-U/ 94.39
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=5e-102  Score=841.78  Aligned_cols=329  Identities=42%  Similarity=0.669  Sum_probs=311.0

Q ss_pred             HHHHHH----HHhhccCCcccccchHHHHHHHHHhhhhcccCCCCCCCchhH--HHhhHHHHHHHHHHhhcCCcccCcch
Q 001040          845 VWVVQL----LLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIF--IKQGLASFVTFVVTHFNDPRISSADL  918 (1178)
Q Consensus       845 ~Wl~~~----l~~~s~~~~lF~fvPefYle~l~~~~h~lr~~~~p~~~~~~~--~~~~l~~~~~fL~~hf~D~RIv~~d~  918 (1178)
                      +||++.    +.++|++||||+||||+||+++++++.++.++++|.-...++  +++.++++|+||..||+|||||.+|+
T Consensus         2 ~wll~~~lrtl~~~~~tgslfsfvpe~yvn~~~~~~~av~d~~~~l~a~~e~~~~e~sv~~~a~~l~~h~ad~riv~a~~   81 (489)
T KOG4692|consen    2 IWLLERMLRTLTTASNTGSLFSFVPEVYVNTLPILLDAVMDFSHDLKAQFEASDAECSVNAAAEFLGIHSADPRIVLASC   81 (489)
T ss_pred             hHHHHHHHHHhhccCCCcchhhhchHHHHHhhHHHHHHHHHhCcchhhhhcCCCchhhHHHHHHHHhhccCCceeeechh
Confidence            399874    558999999999999999999999988888887776665544  79999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccHHHHHHHhcc-HHHHHhhHHHhhhccCCCCcchhhHHHHHhhcCCCccccCCCCC-----------
Q 001040          919 RDLLLQSISVLVQYKDYLAAFESN-EAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGES-----------  986 (1178)
Q Consensus       919 kd~llq~l~~l~~~~~~l~a~E~~-~~a~~~~v~~ll~~~d~r~W~~~~~iLlR~~~G~GF~~~k~~~~-----------  986 (1178)
                      ||+|||+|++|+|||.+++|+||. +++|++||+|||+|||||+|+||||||+|||||+||+|+|++.|           
T Consensus        82 kdsllqal~t~~c~~~~vraler~~k~sq~smvraLLapyenR~W~q~nwillRlw~G~Gf~y~~~r~phl~rsr~~n~~  161 (489)
T KOG4692|consen   82 KDSLLQALGTLTCHKSGVRALERTSKRSQASMVRALLAPYENRSWIQVNWILLRLWKGSGFSYLKNREPHLCRSRSRNET  161 (489)
T ss_pred             HHHHHHHhhheeechhhhhHHHhccHhhHHHHHHHHhhhhhcCCchhhhHHHHHHHccCCccccccCCchhhhhhhcccc
Confidence            999999999999999999999999 79999999999999999999999999999999999999987754           


Q ss_pred             ------CCchHHHHHHHHHHHhcCCcchHHHHHHHhhhhchhHHHHHHHHHHHHhhhcchh------hhhhhhhhhhHhH
Q 001040          987 ------SSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSE------FQQKKCCVIFDLS 1054 (1178)
Q Consensus       987 ------~~~S~~fQ~~l~e~l~~~~~~~~~FLn~~ln~LNWa~sEF~~~~qEiq~~~~v~~------~qqr~C~~~FeLs 1054 (1178)
                            ++||++||+||+..|++|+|++++|||||||||||||||||+|+|||||+.++.|      +|||||+||||||
T Consensus       162 ~~sl~~p~pst~fQ~ll~a~ll~dgp~a~tFLNsvlnqLnWafsEFi~~vqEiQ~~aqr~E~~~~e~~Qlk~C~~cFeLs  241 (489)
T KOG4692|consen  162 HTSLSSPAPSTVFQALLRAALLNDGPLASTFLNSVLNQLNWAFSEFIVSVQEIQEKAQRMENTLFEPFQLKKCCVCFELS  241 (489)
T ss_pred             cccccCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCHHHHhHhhhhHHHH
Confidence                  4589999999999999999999999999999999999999999999999766555      8999999999999


Q ss_pred             HhHHHHHHHHhhhcccccccC----chhhHHHHHHHHHHHHhhccCccchhhHHHHhhccCCCccccchhhhhHHHHHHH
Q 001040         1055 CNLTRVLEFCTHEIPQAFLSG----TDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGII 1130 (1178)
Q Consensus      1055 vsL~RvLE~~~~~~P~~fl~~----~~~~l~Rl~ql~~~VLnr~t~~~~~~~f~~~l~~~~~~le~v~~~~ilaa~~GIL 1130 (1178)
                      |||+|||||+++.+|+||+|+    ++++++|||||++|||||||++  .++|+.++++++|++|+|+|||||+|++|||
T Consensus       242 vsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrVt~e--~~lf~rvv~~~~~~le~V~hypil~a~~GIl  319 (489)
T KOG4692|consen  242 VSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRVTDE--FFLFVRVVRRQGQPLEKVSHYPILAALVGIL  319 (489)
T ss_pred             HHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhhccc--cchhHHHHHhhcCChhhhcccchHHHHHHHH
Confidence            999999999999999999997    7899999999999999999998  4589999999999999999999999999999


Q ss_pred             HHHhhhccccccCcccchhhhhhcCCCCccccccceeeecccccc
Q 001040         1131 LNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWVS 1175 (1178)
Q Consensus      1131 l~L~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~y~~~~~w~~ 1175 (1178)
                      ||||++++++..++++++...++++|+|||++++||||++|||+.
T Consensus       320 l~Ll~~~~~S~~r~Q~~~~~~~a~l~dP~fq~~~~~ylLg~~~pd  364 (489)
T KOG4692|consen  320 LNLLEASEDSKPRQQHDVIGLFASLDDPDFQYYGFQYLLGYNWPD  364 (489)
T ss_pred             HHHHHhCcccCcccchhhhhhheeccCcchHHHHHHHHHhcCCCC
Confidence            999999999999999999999999999999999999999999974

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00449 SPRY Domain in SPla and the RYanodine Receptor Back     alignment and domain information
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function Back     alignment and domain information
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown] Back     alignment and domain information
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms] Back     alignment and domain information
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification] Back     alignment and domain information
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38 Back     alignment and domain information
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only] Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only] Back     alignment and domain information
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1178
3toj_A213 Structure Of The Spry Domain Of Human Ash2l Length 8e-09
>pdb|3TOJ|A Chain A, Structure Of The Spry Domain Of Human Ash2l Length = 213 Back     alignment and structure 
Iteration: 1

 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 29/180 (16%)
Query: 120 VRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLE---TSGVQQLGWA----TLSCPF 172
           ++I+   L V     +S  RA+  V KG W +E+T++        +LGW+     L  P 
Sbjct: 24  LKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAP- 82
Query: 173 TDHKGVGDADDSYAFDGRRVKKWNKE-AEPYGQSWVAGDIIGCCIDLDSDEIS------- 224
                +G    SY++  ++  K+++   + Y   +  GD++G  I+L  D IS       
Sbjct: 83  -----LGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEI 137
Query: 225 -FYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPIN--CYLPLQE 281
            FY+NGV+ GVA+  I +      Y+PA+SL +     +NFG   FKYP     Y P+ +
Sbjct: 138 IFYKNGVNQGVAYKDIFEG----VYFPAISLYKSCTVSINFGP-CFKYPPKDLTYRPMSD 192

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1178
3toj_A213 SET1/ASH2 histone methyltransferase complex subun; 4e-45
2yyo_A171 SPRY domain-containing protein 3; NPPSFA, national 1e-34
3emw_A217 SPRY domain-containing SOCS box protein 2; apoptos 5e-29
2jk9_A212 SPRY domain-containing SOCS box protein 1; transcr 1e-27
3m62_A 968 Ubiquitin conjugation factor E4; armadillo-like re 5e-27
2afj_A226 Gene rich cluster, C9 gene; beta sandwich, gene re 4e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Length = 213 Back     alignment and structure
 Score =  161 bits (408), Expect = 4e-45
 Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 21/200 (10%)

Query: 98  GILENGSGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLE- 156
           G L        V L        ++I+   L V     +S  RA+  V KG W +E+T++ 
Sbjct: 2   GDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDE 61

Query: 157 --TSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNK-EAEPYGQSWVAGDIIG 213
                  +LGW+           +G    SY++  ++  K+++   + Y   +  GD++G
Sbjct: 62  MPPDTAARLGWSQPLGNLQ--APLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLG 119

Query: 214 CCIDLDSDEIS--------FYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFG 265
             I+L  D IS        FY+NGV+ GVA+  I        Y+PA+SL +     +NFG
Sbjct: 120 FYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDI----FEGVYFPAISLYKSCTVSINFG 175

Query: 266 ARPFKYPIN--CYLPLQESP 283
              FKYP     Y P+ +  
Sbjct: 176 P-CFKYPPKDLTYRPMSDMG 194
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Length = 171 Back     alignment and structure
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Length = 217 Back     alignment and structure
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Length = 212 Back     alignment and structure
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 Back     alignment and structure
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Length = 226 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1178
3toj_A213 SET1/ASH2 histone methyltransferase complex subun; 100.0
2yyo_A171 SPRY domain-containing protein 3; NPPSFA, national 99.97
3emw_A217 SPRY domain-containing SOCS box protein 2; apoptos 99.88
2jk9_A212 SPRY domain-containing SOCS box protein 1; transcr 99.87
2afj_A226 Gene rich cluster, C9 gene; beta sandwich, gene re 99.83
3m62_A 968 Ubiquitin conjugation factor E4; armadillo-like re 99.74
2vok_A188 52 kDa RO protein; polymorphism, immune system, me 99.35
2wl1_A191 Pyrin, marenostrin; amyloidosis, polymorphism, cyt 99.33
2fbe_A201 Predicted: similar to RET finger protein-like 1; d 99.3
3kb5_A193 Tripartite motif-containing protein 72; B30.2, gus 99.25
3uv9_A186 TRIM5alpha, tripartite motif-containing protein 5; 99.25
4b3n_A602 Maltose-binding periplasmic protein, tripartite mo 98.8
2e63_A170 KIAA1787 protein; structure genomics, neuralized d 97.92
2yue_A168 Protein neuralized; structure genomics, NEUZ(NHR) 96.93
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.6e-36  Score=321.47  Aligned_cols=190  Identities=28%  Similarity=0.479  Sum_probs=162.2

Q ss_pred             CCCceEEeCcccCCCCeEEeCCCcEEEecCceeeEEeCceeecCEEEEEEEEEe---cCeEEEEEecCCCCCCCCCCCCC
Q 001040          104 SGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLET---SGVQQLGWATLSCPFTDHKGVGD  180 (1178)
Q Consensus       104 ~gp~~V~LD~~~~~~~L~LS~d~L~V~g~s~~ssVRAn~~V~sGkwYFEVtI~s---~G~vrIGwAt~~~~l~~~~gVG~  180 (1178)
                      +.++.|.||+.++++.+.||+|++++++.++|.+|||+.++.+|+|||||+|..   .+.++|||++..++++  .++|+
T Consensus         8 ~~~~~v~ld~~d~~~~l~ls~d~l~v~~~~~~~~vra~~~v~~G~~YfEV~v~~~~~~~~~~iG~a~~~~~~~--~~~G~   85 (213)
T 3toj_A            8 CLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQ--APLGY   85 (213)
T ss_dssp             EEECCCCEEEEEECTTSEECTTSSEEECCSSCEEEEESCCBSSEEEEEEEEEEECCTTCEEEEEEECTTSCTT--SCTTS
T ss_pred             hcCCeEEechhhCCCCEEEcCCCcEEEeCCceeEEEeCCCccCCeEEEEEEEeecCCCceEEEEeccCCcccc--cCCCC
Confidence            346789999999999999999999999988999999999999999999999998   5799999999988775  47999


Q ss_pred             CCCceeEeCCCcccccCC-cccCCCccCCCCEEEEEEeCCC--------ceEEEEECCeeeeeeeecccccCCCCcEEEE
Q 001040          181 ADDSYAFDGRRVKKWNKE-AEPYGQSWVAGDIIGCCIDLDS--------DEISFYRNGVSLGVAFSGIRKMGPGFGYYPA  251 (1178)
Q Consensus       181 d~~SyGYdG~~G~~~h~~-~~~YG~~f~~GDVIGCgIDld~--------GtI~FtkNG~~LGvAFe~I~~~~~~~~lYPA  251 (1178)
                      +.+||||++++|++||++ .++||++|+.||||||+||+++        ++|+||+||+.+|.||+++.    .+.|||+
T Consensus        86 d~~S~gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~~~----~~~lyPa  161 (213)
T 3toj_A           86 DKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDIF----EGVYFPA  161 (213)
T ss_dssp             STTEEEEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEESCC----SSCBEEE
T ss_pred             CCCcEEEECCCCeEEeCCcCcccCCCCCCCCEEEEEEEcCCCccccCCccEEEEEeCCeeeeeeEEcCC----CCcEEEE
Confidence            999999999999999876 5789999999999999999998        79999999999999999875    2689999


Q ss_pred             EEeCCCCEEEEecCCCCCccCCC--CccccccCCCchhHHHHHHHHHHHHhcCch
Q 001040          252 VSLSQGERCVLNFGARPFKYPIN--CYLPLQESPPVNVFATQLLQCLSRLLGMDK  304 (1178)
Q Consensus       252 VSl~~g~~V~vNFG~~PFkYpp~--Gf~PL~~pP~~~~~a~~ll~~~~~ll~~~~  304 (1178)
                      ||+..++++++|||+ ||+|||+  +|+|+++..    +++..++++++++++.+
T Consensus       162 vsl~~~~~v~~NFG~-~F~~~p~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~  211 (213)
T 3toj_A          162 ISLYKSCTVSINFGP-CFKYPPKDLTYRPMSDMG----WGAVVEHTLADVLYHVE  211 (213)
T ss_dssp             EEEESSCEEEEECSS-SCSSCCSSCCCEEGGGGG----EEEECCC----------
T ss_pred             EEcCCCCEEEEECCC-CCccCCCCCceEcHHHhc----cccccHHHHHHHHHHhh
Confidence            999889999999999 9999876  699996543    34556778888887643
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Back     alignment and structure
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Back     alignment and structure
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Back     alignment and structure
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Back     alignment and structure
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Back     alignment and structure
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B* Back     alignment and structure
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens} Back     alignment and structure
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22 Back     alignment and structure
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens} Back     alignment and structure
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta} Back     alignment and structure
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A Back     alignment and structure
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1178
d2fnja1217 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophi 3e-20
d2afja1213 b.29.1.22 (A:12-224) SPRY domain-containing SOCS b 1e-19
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 88.3 bits (218), Expect = 3e-20
 Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 25/164 (15%)

Query: 135 FSSARANVCVWKGKWMYEVTLE---TSGVQQLGWATLSCPFTDHK---GVGDADDSYAFD 188
               R  V + KG  ++E+            +G  T   P         VG  + S+ +D
Sbjct: 54  TDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLVGSTEQSWGWD 113

Query: 189 GRRVKKWNKEAE----------PYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSG 238
             R K ++                 ++++  D     +D+D   +SF  +   LG+AF G
Sbjct: 114 LGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRG 173

Query: 239 IRKMGPGFGYYPAVSLSQGERCV-LNFGARPFKYPINCYLPLQE 281
           +     G   YP VS   G   + + +       P    LPL +
Sbjct: 174 L----RGKKLYPIVSAVWGHCEITMRYIGGLDPEP----LPLMD 209
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 213 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1178
d2fnja1217 LD34464p {Fruit fly (Drosophila melanogaster) [Tax 99.91
d2afja1213 SPRY domain-containing SOCS box protein 2 {Mouse ( 99.9
d2fbea1188 Similar to Ret finger protein-like 1 {Human (Homo 99.42
d2iwgb1179 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 96 99.4
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=1e-24  Score=228.52  Aligned_cols=155  Identities=21%  Similarity=0.288  Sum_probs=131.2

Q ss_pred             EEeCcccCCCCeEEeCCCcEEEec----CceeeEEeCceeecCEEEEEEEEEec---CeEEEEEecCCCCCCC---CCCC
Q 001040          109 VGLEESSICGDVRIAKLPLLVESL----AMFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPFTD---HKGV  178 (1178)
Q Consensus       109 V~LD~~~~~~~L~LS~d~L~V~g~----s~~ssVRAn~~V~sGkwYFEVtI~s~---G~vrIGwAt~~~~l~~---~~gV  178 (1178)
                      ..||+.+++.++.+++|++.+...    .++.+||++.++.+|||||||+|.+.   +.+.|||++..++++.   ...+
T Consensus        24 ~~wn~~~~~~~~~ls~~~~~~~~~~~~~~~~~~vrgt~g~ssGk~YWEV~v~~~~~~~~~~IGV~~~~~~~~~~~~~~~~  103 (217)
T d2fnja1          24 HSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLV  103 (217)
T ss_dssp             TSEEEEEECTTEEEETTEEEEEEECCCTTEEEEEEESCCBCSSEEEEEEECCGGGCTTCCEEEEECTTSCSEEESSCCCT
T ss_pred             ccCChhcCCCCEEEeCCCceEEEeCCccccCCeEEEcccccCCcEEEEEEEecCCCCCeeEEEEEecccCcccCCccccc
Confidence            357888899999999998766432    26789999999999999999999863   4689999999887643   3458


Q ss_pred             CCCCCceeEeCCCcccccCCc----------ccCCCccCCCCEEEEEEeCCCceEEEEECCeeeeeeeecccccCCCCcE
Q 001040          179 GDADDSYAFDGRRVKKWNKEA----------EPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGY  248 (1178)
Q Consensus       179 G~d~~SyGYdG~~G~~~h~~~----------~~YG~~f~~GDVIGCgIDld~GtI~FtkNG~~LGvAFe~I~~~~~~~~l  248 (1178)
                      |.+.+||+|++.++..||++.          ..||++|..||||||++|+++|+|+||+||+.+|+||++++    +..|
T Consensus       104 G~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~gDvIGV~LD~d~gtLsF~kNG~~lGvAf~~l~----~~~l  179 (217)
T d2fnja1         104 GSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRGLR----GKKL  179 (217)
T ss_dssp             TSSTTEEEEETTTTEEEESTTTSCCEESSTTCCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT----TCCB
T ss_pred             cCCCCcceEecCCCEEEecCCCccccccCcccccCCccCCCCEEEEEEeCCCCEEEEEECCEEeeEEEeCCC----CCeE
Confidence            999999999999888887642          24788999999999999999999999999999999999875    3589


Q ss_pred             EEEEEeC-CCCEEEEecCCC
Q 001040          249 YPAVSLS-QGERCVLNFGAR  267 (1178)
Q Consensus       249 YPAVSl~-~g~~V~vNFG~~  267 (1178)
                      ||+||.. .+.+|+++|...
T Consensus       180 yP~vs~~~~~~~v~~~~~~~  199 (217)
T d2fnja1         180 YPIVSAVWGHCEITMRYIGG  199 (217)
T ss_dssp             EEEEEECCTTCEEEEEEEEE
T ss_pred             EEEEEeccCCcEEEEEEcCC
Confidence            9999974 567999998654
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure